BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8242
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FTS|A Chain A, Crystal Structure Of The Glycine Receptor-Gephyrin Complex
pdb|2FU3|A Chain A, Crystal Structure Of Gephyrin E-Domain
pdb|2FU3|B Chain B, Crystal Structure Of Gephyrin E-Domain
Length = 419
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 163/271 (60%), Gaps = 30/271 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVL---- 57
DI++G +L +G +GP E+GLLA+VGVT + V K P++ ++STGNEL P+ +L
Sbjct: 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKI 205
Query: 58 --------------------KPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
GI D+PD LL L ++ DVII++G VSMG+KDYL
Sbjct: 206 RDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYL 265
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLG----NKLIFCLPGNPVSAMVTCHLFVLPA 153
K +L DL A IHFGRV MKPG PTTFATL K+IF LPGNPVSA+VTC+LFV+PA
Sbjct: 266 KQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPA 325
Query: 154 LKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXX 213
L+ + G P P ++KA+L+ D+ LDP RPEYHR L ++ E A STG+Q
Sbjct: 326 LRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWHHQEPLPWAQSTGNQMSSRLM 384
Query: 214 XXXXXNGFAILPKATTKKT-LEKNSLVNVIL 243
NG +LP T + L K +V+V++
Sbjct: 385 SMRSANGLLMLPPKTEQYVELHKGEVVDVMV 415
>pdb|1T3E|A Chain A, Structural Basis Of Dynamic Glycine Receptor Clustering
pdb|1T3E|B Chain B, Structural Basis Of Dynamic Glycine Receptor Clustering
Length = 421
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 163/271 (60%), Gaps = 30/271 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVL---- 57
DI++G +L +G +GP E+GLLA+VGVT + V K P++ ++STGNEL P+ +L
Sbjct: 148 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKI 207
Query: 58 --------------------KPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
GI D+PD LL L ++ DVII++G VSMG+KDYL
Sbjct: 208 RDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYL 267
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLG----NKLIFCLPGNPVSAMVTCHLFVLPA 153
K +L DL A IHFGRV MKPG PTTFATL K+IF LPGNPVSA+VTC+LFV+PA
Sbjct: 268 KQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPA 327
Query: 154 LKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXX 213
L+ + G P P ++KA+L+ D+ LDP RPEYHR L ++ E A STG+Q
Sbjct: 328 LRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWHHQEPLPWAQSTGNQMSSRLM 386
Query: 214 XXXXXNGFAILPKATTKKT-LEKNSLVNVIL 243
NG +LP T + L K +V+V++
Sbjct: 387 SMRSANGLLMLPPKTEQYVELHKGEVVDVMV 417
>pdb|2NQQ|A Chain A, Moea R137q
pdb|2NQQ|B Chain B, Moea R137q
pdb|2NQQ|C Chain C, Moea R137q
pdb|2NQQ|D Chain D, Moea R137q
Length = 411
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQK|A Chain A, Moea D59n Mutant
pdb|2NQK|B Chain B, Moea D59n Mutant
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQM|A Chain A, Moea T100a Mutant
pdb|2NQM|B Chain B, Moea T100a Mutant
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|1G8L|A Chain A, Crystal Structure Of Escherichia Coli Moea
pdb|1G8L|B Chain B, Crystal Structure Of Escherichia Coli Moea
pdb|1G8R|A Chain A, Moea
pdb|1G8R|B Chain B, Moea
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQN|A Chain A, Moea T100w
pdb|2NQN|B Chain B, Moea T100w
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NRS|A Chain A, Moea S371w
pdb|2NRS|B Chain B, Moea S371w
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGWHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|1FC5|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
pdb|1FC5|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein
Length = 411
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLXLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NRO|A Chain A, Moea K279q
pdb|2NRO|B Chain B, Moea K279q
Length = 411
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ ++PGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIQPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQU|A Chain A, Moea E188q
pdb|2NQU|B Chain B, Moea E188q
Length = 411
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG++L P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDQLQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQR|A Chain A, Moea D142n
pdb|2NQR|B Chain B, Moea D142n
Length = 411
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
+I GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 NISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQS|A Chain A, Moea E188a
pdb|2NQS|B Chain B, Moea E188a
Length = 411
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+ L P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDALQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NRP|A Chain A, Moea R350a
pdb|2NRP|B Chain B, Moea R350a
Length = 411
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQAGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|2NQV|A Chain A, Moea D228a
pdb|2NQV|B Chain B, Moea D228a
Length = 411
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA------- 54
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 55 -----------------HVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI R DP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRADPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSHPS-PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQXXXXXXXXX 216
+G++ PA + + + L P R ++ R L N E L +TGHQ
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 XXNGFAILPK 226
N F +L +
Sbjct: 379 LGNCFIVLER 388
>pdb|1UZ5|A Chain A, The Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikosii
Length = 402
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 28/179 (15%)
Query: 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP- 59
IDI KG ++++G +G + LL++VG+ + V++KP + ++STGNE+ P + LKP
Sbjct: 144 IDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEI-VPPGNELKPG 202
Query: 60 ------------------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKD 95
G+ RDD + L ++ + DV++ +G S G KD
Sbjct: 203 QIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKD 262
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPAL 154
L ++ +LG + + ++PGKPT + K +F LPG P S + L V+P L
Sbjct: 263 -LTASVIEELG-EVKVHGIAIQPGKPTIIGVIKGKPVFGLPGYPTSCLTNFTLLVVPLL 319
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
Length = 403
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 37/213 (17%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNEL-DEPDAHVLKPG 60
D++KG L++G ++ P +L LL ++G+ + V KP + I+ TG+EL EP + G
Sbjct: 154 DVKKGDIALKKGTILRPQDLALLKALGIRKVPVKVKPKVGIIITGSELVQEPSLEEFEKG 213
Query: 61 -------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKD 95
+ D+ DL+ L+ CD+++ TG + GD D
Sbjct: 214 KIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIRSALEKAKRECDLVLITGGSAFGDMD 273
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALK 155
Y + ++ F ++PG+P + + +F + G PV+ HLFV AL
Sbjct: 274 YAHKFV------NLLFHGTTIRPGRPIGYG----ERVFVMSGYPVAVFTQFHLFVKHALA 323
Query: 156 ALAGSSHPSPALLKAKLTADLSLDPERPEYHRV 188
L G+ ++A L D+ R E+ RV
Sbjct: 324 KLVGAKD-YEVKVRAVLEDDVPSQLGRYEFVRV 355
>pdb|1WU2|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
pdb|1WU2|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
Length = 396
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 39/218 (17%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNEL-DEPDAHVLKPG 60
D++KG +L +G ++ P ++ L ++G+ + V KP + I+ TG+EL +EP K G
Sbjct: 147 DVKKGEVVLRKGTILRPQDVAXLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEG 206
Query: 61 -------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKD 95
+ DD ++ + L+ CD+++ TG + GDKD
Sbjct: 207 KIVETNSIXLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGDKD 266
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALK 155
Y + ++ F +KPG+P + G K +F G PVS +LFV AL
Sbjct: 267 YAHKFV------NLLFHGTTIKPGRPFGY---GEK-VFIXSGYPVSVFAQFNLFVKHALA 316
Query: 156 ALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYN 193
G+ + +KA L D+ R E+ + ++Y
Sbjct: 317 KXVGAQN-YEVKVKAILQDDIPSQLGRYEF--IKIYYE 351
>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
Length = 391
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 47 NELDEPDAHVLKPGICRDDPDLLLQ-CLKSNLASCDVIISTGSVSMGDKDYLKDIL 101
N+L E + ++++ + + +PDL Q L SN + + + G+ ++ +D KDI+
Sbjct: 308 NQLTEVEKNLVREAVKKSNPDLRAQDVLNSNYVTGITVSNNGTTTITYRDGRKDII 363
>pdb|3QC5|X Chain X, Gspb
pdb|3QC6|X Chain X, Gspb
Length = 360
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 47 NELDEPDAHVLKPGICRDDPDLLLQ-CLKSNLASCDVIISTGSVSMGDKDYLKDIL 101
N+L E + ++++ + + +PDL Q L SN + + + G+ ++ +D KDI+
Sbjct: 293 NQLTEVEKNLVREAVKKSNPDLRAQDVLNSNYVTGITVSNNGTTTITYRDGRKDII 348
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 32 ITVYKK--PIIHILSTGNE-LDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGS 88
I VY + P H+ L E + PG C D + QC + +L C ++
Sbjct: 11 IKVYGRMIPCKHVFCYDCAILHEKKGDKMCPG-CSDPVQRIEQCTRGSLFMCSIVQGCKR 69
Query: 89 VSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGN 129
+ +D H +M+ GKP T A+L N
Sbjct: 70 TYLSQRDL-----------QAHINHRHMRAGKPVTRASLEN 99
>pdb|3IWT|A Chain A, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|B Chain B, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|C Chain C, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
Length = 178
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 66 PDLLLQCLKS-----NLASCDVIISTGSVSMGDKDYLKDIL----------VTDLGASIH 110
PD ++ LK+ ++ DVIISTG D + + +D+ +
Sbjct: 63 PDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVS 122
Query: 111 FGRVNMKPGKPTTFAT---LGNKLIFCLPGNPVSAMVTCHLFVLPAL 154
F +K T A+ +G K+++ LPG+P + + +LP +
Sbjct: 123 FNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEV 169
>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And
Ferredoxin-Nadp+ Reductase
pdb|3B2F|A Chain A, Maize Ferredoxin 1
pdb|3B2F|B Chain B, Maize Ferredoxin 1
Length = 98
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 48 ELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTD 104
EL PD + D DL C + +SC + +GSV D+ YL D + D
Sbjct: 15 ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIAD 71
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 24/115 (20%)
Query: 22 GLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCD 81
G LAS + + + K +I L E D H+ + P+LL L +N
Sbjct: 256 GKLASADIETYLLEKSRVIFQLKA-----ERDYHIFYQILSNKKPELLDMLLITNNPYDY 310
Query: 82 VIISTGSVSMGDKDYLKDILVTD-------------------LGASIHFGRVNMK 117
IS G ++ D ++++ TD GA +HFG + K
Sbjct: 311 AFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFK 365
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 16 IGPPELGLLASVGVTSITVYKKPIIH-------ILSTGNELDEPDAHVLKPGICRDDPDL 68
+G P LA GV ++ + +H IL T ++D P + V + + + +PD+
Sbjct: 41 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDI 100
Query: 69 LLQCLKSNL 77
L L+ L
Sbjct: 101 QLTALQQRL 109
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 16 IGPPELGLLASVGVTSITVYKKPIIH-------ILSTGNELDEPDAHVLKPGICRDDPDL 68
+G P LA GV ++ + +H IL T ++D P + V + + + +PD+
Sbjct: 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDI 98
Query: 69 LLQCLKSNL 77
L L+ L
Sbjct: 99 QLTALQQRL 107
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 1 IDIRKGATILEE----GNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAH- 55
I ++G LE G +G P G + IT+ K I H E P+
Sbjct: 67 ITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLMAKYIQHTPPQPPEWGMPEMRE 126
Query: 56 ----VLKPGICRDDPDLLLQCLK-SNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIH 110
++KP D P L L NL S + G +++ D D K + V D G ++H
Sbjct: 127 SWKVLVKP---EDRPKKQLNDLDLPNLFSV-TLRDAGQIALVDGDSKKIVKVIDTGYAVH 182
Query: 111 FGRVN 115
R++
Sbjct: 183 ISRMS 187
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 1 IDIRKGATILEE----GNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAH- 55
I ++G LE G +G P G + IT+ K I H E P+
Sbjct: 67 ITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLMAKYIQHTPPQPPEWGMPEMRE 126
Query: 56 ----VLKPGICRDDPDLLLQCLK-SNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIH 110
++KP D P L L NL S + G +++ D D K + V D G ++H
Sbjct: 127 SWKVLVKP---EDRPKKQLNDLDLPNLFSV-TLRDAGQIALVDGDSKKIVKVIDTGYAVH 182
Query: 111 FGRVN 115
R++
Sbjct: 183 ISRMS 187
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 1 IDIRKGATILEE----GNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAH- 55
I ++G LE G +G P G + IT+ K I H E P+
Sbjct: 67 ITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLMAKYIQHTPPQPPEWGMPEMRE 126
Query: 56 ----VLKPGICRDDPDLLLQCLK-SNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIH 110
++KP D P L L NL S + G +++ D D K + V D G ++H
Sbjct: 127 SWKVLVKP---EDRPKKQLNDLDLPNLFSV-TLRDAGQIALVDGDSKKIVKVIDTGYAVH 182
Query: 111 FGRVN 115
R++
Sbjct: 183 ISRMS 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,452,904
Number of Sequences: 62578
Number of extensions: 293371
Number of successful extensions: 584
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 31
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)