Query psy8242
Match_columns 248
No_of_seqs 209 out of 1424
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 22:21:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0303 MoeA Molybdopterin bio 100.0 1.6E-62 3.4E-67 456.0 29.5 238 1-245 140-402 (404)
2 PRK10680 molybdopterin biosynt 100.0 8.5E-60 1.8E-64 440.4 31.0 241 1-247 141-407 (411)
3 cd00887 MoeA MoeA family. Memb 100.0 2E-58 4.3E-63 430.1 31.7 238 1-244 132-394 (394)
4 PRK14690 molybdopterin biosynt 100.0 2.1E-58 4.5E-63 431.8 30.7 235 1-246 157-416 (419)
5 PRK14497 putative molybdopteri 100.0 3.1E-58 6.7E-63 439.8 30.1 235 1-244 143-404 (546)
6 PRK14491 putative bifunctional 100.0 8.5E-57 1.8E-61 437.0 31.5 242 1-248 331-597 (597)
7 PLN02699 Bifunctional molybdop 100.0 5.7E-55 1.2E-59 427.5 31.3 243 1-247 145-426 (659)
8 PRK14498 putative molybdopteri 100.0 1.8E-53 3.9E-58 417.7 31.2 239 1-247 150-413 (633)
9 KOG2371|consensus 100.0 3.4E-39 7.4E-44 288.5 15.6 226 1-244 154-411 (411)
10 cd03522 MoeA_like MoeA_like. T 100.0 5E-32 1.1E-36 244.7 15.0 155 2-161 117-298 (312)
11 TIGR00177 molyb_syn molybdenum 100.0 6.7E-30 1.5E-34 207.5 13.2 112 38-152 1-144 (144)
12 cd00758 MoCF_BD MoCF_BD: molyb 100.0 2.3E-29 5.1E-34 201.6 10.5 114 39-154 1-133 (133)
13 TIGR02667 moaB_proteo molybden 100.0 9.3E-30 2E-34 210.7 8.0 124 35-160 2-155 (163)
14 cd00886 MogA_MoaB MogA_MoaB fa 99.9 4.7E-28 1E-32 198.3 9.8 120 38-159 1-150 (152)
15 PF00994 MoCF_biosynth: Probab 99.9 1.4E-27 3E-32 193.5 3.7 115 41-156 1-144 (144)
16 smart00852 MoCF_biosynth Proba 99.9 1.5E-24 3.3E-29 173.8 7.1 107 41-148 1-134 (135)
17 PLN02699 Bifunctional molybdop 99.9 5.3E-23 1.1E-27 202.3 13.7 125 36-161 457-619 (659)
18 PRK01215 competence damage-ind 99.9 7.9E-22 1.7E-26 174.9 11.8 122 36-157 2-174 (264)
19 PRK03604 moaC bifunctional mol 99.9 2.3E-21 5E-26 175.1 11.9 121 35-158 151-303 (312)
20 TIGR00200 cinA_nterm competenc 99.8 2.9E-19 6.3E-24 167.4 11.7 119 38-159 1-174 (413)
21 PRK09417 mogA molybdenum cofac 99.7 6.8E-18 1.5E-22 143.2 9.4 111 36-147 2-144 (193)
22 cd00885 cinA Competence-damage 99.7 7.9E-17 1.7E-21 134.3 11.9 118 39-156 1-169 (170)
23 PRK03673 hypothetical protein; 99.7 1.8E-16 3.9E-21 147.7 11.8 122 38-159 2-174 (396)
24 PRK00549 competence damage-ind 99.6 1.1E-15 2.3E-20 143.8 12.4 120 38-157 1-171 (414)
25 PF03454 MoeA_C: MoeA C-termin 99.6 2E-15 4.3E-20 108.0 6.6 72 169-244 1-72 (72)
26 COG0521 MoaB Molybdopterin bio 99.6 5.1E-15 1.1E-19 122.3 9.7 121 36-156 6-155 (169)
27 COG1058 CinA Predicted nucleot 99.6 2.1E-14 4.6E-19 126.1 11.6 120 38-157 2-172 (255)
28 PRK03670 competence damage-ind 99.6 1.9E-14 4.2E-19 126.9 10.2 118 38-155 1-177 (252)
29 cd03522 MoeA_like MoeA_like. T 84.8 1 2.2E-05 41.2 3.6 30 8-37 19-48 (312)
30 TIGR01196 edd 6-phosphoglucona 84.8 0.27 5.8E-06 48.5 -0.2 104 31-141 58-181 (601)
31 PRK09054 phosphogluconate dehy 83.4 0.44 9.6E-06 47.1 0.7 105 31-142 59-183 (603)
32 COG1899 DYS1 Deoxyhypusine syn 82.2 2.7 5.9E-05 38.3 5.1 77 69-161 70-153 (318)
33 PRK12448 dihydroxy-acid dehydr 82.1 0.52 1.1E-05 46.6 0.6 116 17-141 14-148 (615)
34 PRK00911 dihydroxy-acid dehydr 75.0 1 2.2E-05 44.2 0.2 37 17-54 12-48 (552)
35 TIGR02743 TraW type-F conjugat 73.8 14 0.0003 31.7 6.9 70 4-112 101-172 (202)
36 TIGR00110 ilvD dihydroxy-acid 72.8 0.99 2.2E-05 44.1 -0.4 99 35-141 9-126 (535)
37 PRK13016 dihydroxy-acid dehydr 69.1 1.7 3.7E-05 42.8 0.3 121 11-141 15-152 (577)
38 PRK13738 conjugal transfer pil 68.6 21 0.00045 30.9 6.8 71 4-112 99-170 (209)
39 COG1105 FruK Fructose-1-phosph 66.6 34 0.00073 31.4 8.1 86 12-102 59-153 (310)
40 PF10686 DUF2493: Protein of u 64.2 18 0.00038 25.6 4.6 43 65-108 16-59 (71)
41 PRK08306 dipicolinate synthase 62.9 39 0.00083 30.5 7.8 81 73-159 204-291 (296)
42 PRK00805 putative deoxyhypusin 61.9 17 0.00036 33.6 5.3 78 68-159 61-143 (329)
43 PRK06131 dihydroxy-acid dehydr 60.7 2.9 6.2E-05 41.3 0.0 122 12-141 12-148 (571)
44 TIGR00561 pntA NAD(P) transhyd 60.6 91 0.002 30.6 10.3 93 64-158 232-338 (511)
45 cd04245 AAK_AKiii-YclM-BS AAK_ 60.5 13 0.00028 33.6 4.2 89 7-108 113-213 (288)
46 PRK13017 dihydroxy-acid dehydr 60.3 27 0.00059 34.8 6.7 36 19-54 28-64 (596)
47 COG1740 HyaA Ni,Fe-hydrogenase 59.9 31 0.00067 31.9 6.5 75 71-147 100-200 (355)
48 PRK02301 putative deoxyhypusin 59.1 18 0.0004 33.2 5.0 79 67-159 71-154 (316)
49 cd03334 Fab1_TCP TCP-1 like do 55.0 20 0.00043 31.7 4.5 66 35-106 84-152 (261)
50 PRK10646 ADP-binding protein; 54.4 14 0.0003 30.3 3.0 42 65-107 13-54 (153)
51 COG0129 IlvD Dihydroxyacid deh 53.4 6.3 0.00014 38.9 1.1 53 17-76 23-75 (575)
52 PRK02492 deoxyhypusine synthas 52.8 32 0.0007 32.0 5.5 81 67-160 72-157 (347)
53 TIGR01957 nuoB_fam NADH-quinon 51.5 15 0.00032 29.9 2.8 71 77-150 55-136 (145)
54 TIGR00518 alaDH alanine dehydr 50.0 1.4E+02 0.0031 27.7 9.5 85 73-158 224-324 (370)
55 COG0394 Wzb Protein-tyrosine-p 49.9 60 0.0013 25.9 6.1 55 37-108 2-60 (139)
56 PRK08211 putative dehydratase; 49.8 6.3 0.00014 39.4 0.5 115 24-140 49-189 (655)
57 PRK14817 NADH dehydrogenase su 48.2 84 0.0018 26.5 6.8 79 77-160 73-162 (181)
58 PRK06411 NADH dehydrogenase su 47.3 26 0.00057 29.6 3.7 91 65-159 60-161 (183)
59 PRK09330 cell division protein 47.1 27 0.00058 33.0 4.1 48 68-118 86-137 (384)
60 PRK10468 hydrogenase 2 small s 46.7 37 0.00081 31.9 5.0 83 67-150 96-203 (371)
61 TIGR03432 yjhG_yagF probable d 45.6 6.1 0.00013 39.5 -0.4 114 25-140 44-183 (640)
62 COG0081 RplA Ribosomal protein 44.9 20 0.00043 31.3 2.7 58 36-106 71-129 (228)
63 TIGR00150 HI0065_YjeE ATPase, 44.8 25 0.00055 28.0 3.1 42 65-107 7-48 (133)
64 KOG3445|consensus 44.6 20 0.00044 28.9 2.5 48 86-135 33-86 (145)
65 cd02191 FtsZ FtsZ is a GTPase 44.3 38 0.00083 30.7 4.6 51 67-120 72-126 (303)
66 COG0252 AnsB L-asparaginase/ar 44.0 37 0.0008 31.6 4.5 55 35-89 17-110 (351)
67 COG2129 Predicted phosphoester 43.8 49 0.0011 28.9 4.9 37 64-100 14-54 (226)
68 COG0206 FtsZ Cell division GTP 43.6 58 0.0013 30.2 5.7 51 67-120 83-137 (338)
69 cd04257 AAK_AK-HSDH AAK_AK-HSD 42.6 60 0.0013 29.3 5.6 89 7-108 118-219 (294)
70 cd04243 AAK_AK-HSDH-like AAK_A 42.3 64 0.0014 29.1 5.7 89 7-108 117-218 (293)
71 PLN02551 aspartokinase 41.9 50 0.0011 32.4 5.3 97 7-112 166-277 (521)
72 cd06059 Tubulin The tubulin su 41.3 39 0.00084 31.5 4.3 57 63-120 69-132 (382)
73 KOG0025|consensus 40.6 69 0.0015 29.4 5.5 57 2-85 157-215 (354)
74 PRK10997 yieM hypothetical pro 39.9 49 0.0011 32.3 4.8 114 19-133 341-473 (487)
75 PRK14814 NADH dehydrogenase su 39.7 41 0.00089 28.5 3.8 76 78-157 72-157 (186)
76 PRK14819 NADH dehydrogenase su 39.5 36 0.00078 30.3 3.5 71 77-150 69-150 (264)
77 TIGR00347 bioD dethiobiotin sy 39.3 79 0.0017 25.2 5.4 45 63-108 83-131 (166)
78 PF08459 UvrC_HhH_N: UvrC Heli 39.1 28 0.0006 28.6 2.6 50 62-114 54-111 (155)
79 PRK14816 NADH dehydrogenase su 38.4 41 0.00088 28.4 3.5 73 77-150 79-160 (182)
80 TIGR02069 cyanophycinase cyano 37.9 18 0.00039 31.9 1.4 16 74-89 77-92 (250)
81 TIGR02853 spore_dpaA dipicolin 37.6 42 0.00091 30.1 3.8 62 73-139 203-265 (287)
82 PRK06291 aspartate kinase; Pro 37.3 62 0.0014 31.1 5.1 97 7-112 123-232 (465)
83 COG0802 Predicted ATPase or ki 37.0 46 0.001 27.2 3.5 41 66-107 11-51 (149)
84 PF02367 UPF0079: Uncharacteri 36.5 36 0.00079 26.7 2.8 41 67-108 2-42 (123)
85 PRK09424 pntA NAD(P) transhydr 36.0 2.6E+02 0.0056 27.5 9.1 73 67-140 236-317 (509)
86 cd04244 AAK_AK-LysC-like AAK_A 35.8 90 0.0019 28.2 5.6 97 7-112 119-228 (298)
87 PRK14820 NADH dehydrogenase su 35.6 79 0.0017 26.7 4.8 70 78-150 72-151 (180)
88 cd00009 AAA The AAA+ (ATPases 35.5 77 0.0017 23.3 4.5 38 67-105 4-43 (151)
89 cd07388 MPP_Tt1561 Thermus the 35.2 1.2E+02 0.0025 26.3 6.0 59 63-142 14-75 (224)
90 COG1578 Uncharacterized conser 35.1 73 0.0016 28.7 4.7 60 9-87 184-243 (285)
91 smart00864 Tubulin Tubulin/Fts 34.2 85 0.0018 26.1 4.9 39 67-106 70-112 (192)
92 PRK11096 ansB L-asparaginase I 33.9 76 0.0016 29.5 4.9 61 28-89 14-110 (347)
93 CHL00023 ndhK NADH dehydrogena 33.6 77 0.0017 27.7 4.5 78 78-158 70-158 (225)
94 PRK13018 cell division protein 33.2 62 0.0013 30.5 4.3 50 68-120 101-154 (378)
95 cd02201 FtsZ_type1 FtsZ is a G 33.1 68 0.0015 28.9 4.4 49 69-120 74-126 (304)
96 cd07381 MPP_CapA CapA and rela 33.1 3.1E+02 0.0066 23.3 10.8 57 36-92 129-187 (239)
97 cd02190 epsilon_tubulin The tu 32.2 62 0.0013 30.3 4.1 55 63-118 79-140 (379)
98 PF00670 AdoHcyase_NAD: S-aden 32.2 37 0.0008 28.1 2.3 19 73-91 72-91 (162)
99 PTZ00240 60S ribosomal protein 30.3 78 0.0017 29.2 4.3 66 3-77 161-226 (323)
100 PTZ00489 glutamate 5-kinase; P 30.0 97 0.0021 27.5 4.8 62 39-106 9-79 (264)
101 COG0007 CysG Uroporphyrinogen- 29.6 1.8E+02 0.0038 25.8 6.2 31 114-144 85-124 (244)
102 cd06259 YdcF-like YdcF-like. Y 29.5 82 0.0018 24.6 3.9 39 67-106 21-64 (150)
103 PRK13530 arsenate reductase; P 29.2 2.8E+02 0.006 21.7 7.0 56 37-109 3-59 (133)
104 cd04258 AAK_AKiii-LysC-EC AAK_ 28.7 1.1E+02 0.0023 27.7 4.9 92 7-108 114-217 (292)
105 PRK01221 putative deoxyhypusin 28.1 75 0.0016 29.1 3.8 77 69-159 70-152 (312)
106 TIGR00657 asp_kinases aspartat 27.9 2.4E+02 0.0052 26.7 7.4 94 7-112 106-212 (441)
107 cd07396 MPP_Nbla03831 Homo sap 27.5 1.2E+02 0.0026 26.5 4.9 30 62-91 22-52 (267)
108 PRK09034 aspartate kinase; Rev 26.8 98 0.0021 29.7 4.5 89 7-108 113-213 (454)
109 PRK11148 cyclic 3',5'-adenosin 26.4 1.2E+02 0.0026 26.6 4.8 28 64-91 37-67 (275)
110 TIGR00391 hydA hydrogenase (Ni 26.3 1.8E+02 0.004 27.3 6.0 81 68-150 99-205 (365)
111 PF09178 DUF1945: Domain of un 26.2 37 0.0008 22.2 1.0 16 106-121 33-48 (51)
112 COG1731 Archaeal riboflavin sy 26.1 1.2E+02 0.0027 24.4 4.2 42 62-106 41-82 (154)
113 PF10087 DUF2325: Uncharacteri 26.1 73 0.0016 23.4 2.8 36 70-106 39-75 (97)
114 PRK10017 colanic acid biosynth 26.0 88 0.0019 29.8 4.0 47 74-120 112-162 (426)
115 PRK04019 rplP0 acidic ribosoma 26.0 54 0.0012 30.1 2.5 36 3-38 151-186 (330)
116 cd00411 Asparaginase Asparagin 25.9 92 0.002 28.5 4.0 28 62-89 61-88 (323)
117 COG3885 Uncharacterized conser 24.5 1E+02 0.0023 27.2 3.8 32 39-79 4-35 (261)
118 TIGR00321 dhys deoxyhypusine s 24.1 91 0.002 28.5 3.5 76 69-159 61-141 (301)
119 TIGR01769 GGGP geranylgeranylg 23.3 4.5E+02 0.0098 22.4 7.5 90 63-157 7-101 (205)
120 TIGR02153 gatD_arch glutamyl-t 22.9 1.3E+02 0.0028 28.6 4.5 17 36-52 61-77 (404)
121 TIGR03609 S_layer_CsaB polysac 22.9 99 0.0021 27.3 3.6 19 75-93 60-78 (298)
122 PRK00566 DNA-directed RNA poly 22.9 1.2E+02 0.0025 32.9 4.5 34 4-37 819-852 (1156)
123 PRK12354 carbamate kinase; Rev 22.6 2.2E+02 0.0047 26.1 5.7 51 71-121 166-237 (307)
124 TIGR01771 L-LDH-NAD L-lactate 22.5 59 0.0013 29.3 2.0 16 75-90 60-75 (299)
125 PRK12454 carbamate kinase-like 22.5 1.9E+02 0.0041 26.6 5.3 51 71-121 176-246 (313)
126 PRK04183 glutamyl-tRNA(Gln) am 22.2 1.5E+02 0.0032 28.4 4.7 54 36-89 74-162 (419)
127 PF13245 AAA_19: Part of AAA d 22.1 1.1E+02 0.0024 21.5 3.0 31 72-102 2-32 (76)
128 COG3453 Uncharacterized protei 22.1 1.3E+02 0.0029 23.8 3.6 25 13-37 13-37 (130)
129 TIGR00520 asnASE_II L-asparagi 21.7 1.6E+02 0.0035 27.3 4.8 28 62-89 86-115 (349)
130 PF00056 Ldh_1_N: lactate/mala 21.7 64 0.0014 25.6 1.9 17 75-91 65-81 (141)
131 PRK14672 uvrC excinuclease ABC 21.5 1.1E+02 0.0023 31.3 3.7 49 63-114 499-554 (691)
132 PF04263 TPK_catalytic: Thiami 21.5 96 0.0021 24.2 2.8 37 65-102 69-106 (123)
133 PRK00558 uvrC excinuclease ABC 21.1 1.1E+02 0.0024 30.6 3.7 50 63-115 427-484 (598)
134 TIGR00519 asnASE_I L-asparagin 21.0 1.7E+02 0.0037 26.9 4.8 29 61-89 59-87 (336)
135 PF11281 DUF3083: Protein of u 20.8 47 0.001 30.2 1.0 19 35-53 70-88 (316)
136 COG0527 LysC Aspartokinases [A 20.7 2.1E+02 0.0045 27.6 5.4 90 7-108 112-213 (447)
137 PLN00220 tubulin beta chain; P 20.4 1.5E+02 0.0033 28.3 4.5 55 64-119 111-172 (447)
138 TIGR02744 TrbI_Ftype type-F co 20.4 1.1E+02 0.0024 23.7 2.9 34 69-102 71-105 (112)
139 cd07393 MPP_DR1119 Deinococcus 20.2 1.1E+02 0.0023 26.3 3.1 26 65-90 27-52 (232)
140 PRK05579 bifunctional phosphop 20.1 2.7E+02 0.0059 26.3 6.0 83 14-111 132-233 (399)
141 COG2069 CdhD CO dehydrogenase/ 20.1 1.5E+02 0.0032 27.3 4.0 35 66-102 184-218 (403)
142 PF00710 Asparaginase: Asparag 20.0 1E+02 0.0022 27.9 3.1 29 61-89 54-82 (313)
No 1
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-62 Score=455.95 Aligned_cols=238 Identities=44% Similarity=0.728 Sum_probs=225.4
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++|++|+++||+|+|+++++|||+|+.+|+|||||||+||||||||+++++ ++++
T Consensus 140 edi~~G~vil~~G~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~-~l~~gqI~dsN~~~l~a~l~~~G~e 218 (404)
T COG0303 140 EDVAKGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQ-PLEPGQIYDSNSYMLAALLERAGGE 218 (404)
T ss_pred ccccCCCEeecCCCCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCC-CCCCCeEEecCHHHHHHHHHHcCCc
Confidence 599999999999999999999999999999999999999999999999999996 5554
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
|+++||++++++++++++++||+||||||+|+|++||+++++++++| +++||+|+||||||+.+|++++++||+|
T Consensus 219 ~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~SvG~~D~v~~~l~~~lG-~v~~~gia~kPGkP~~~g~~~~~~v~gL 297 (404)
T COG0303 219 VVDLGIVPDDPEALREAIEKALSEADVIITSGGVSVGDADYVKAALERELG-EVLFHGVAMKPGKPTGLGRLGGKPVFGL 297 (404)
T ss_pred eeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccCcchHhHHHHHHhcCC-cEEEEeeeecCCCceEEEEECCcEEEEC
Confidence 89999999999999999999999999999999999999999992388 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||+||+++|+.|++|+|++++|.+...+..++++|..+++++++|.+|+|+++..+ ++ .+.++|.. ++||+++++
T Consensus 298 PGnPvSalv~f~~~v~p~l~~~~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~-~g-~~~a~p~~-~~Sg~~~sl 374 (404)
T COG0303 298 PGNPVSALVNFELFVRPLLRKLLGLKATAPRKVKARLLADIPSKPGRREFLRVRLERD-NG-RLLAEPLG-QGSGLLSSL 374 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCccccCceEEEEecccccCCCCcceEEEEEEecC-Cc-eEEEEECC-CCCHHHHHH
Confidence 9999999999999999999999998766667899999999999999999999999876 44 48999998 899999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEcC
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILTK 245 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll~ 245 (248)
++||||+++|++. +.+++|+.|++++|+
T Consensus 375 ~~adg~i~ip~~~--~~~~~Ge~V~v~~~~ 402 (404)
T COG0303 375 AEADGLIVIPEGV--EGVEAGEEVEVLLLR 402 (404)
T ss_pred hhCceEEEeCCCC--ccccCCCEEEEEEec
Confidence 9999999999997 789999999999987
No 2
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=8.5e-60 Score=440.38 Aligned_cols=241 Identities=36% Similarity=0.534 Sum_probs=222.3
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 141 ed~~~G~~ll~~G~~l~p~~i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~-~~~~g~i~dsn~~~l~a~l~~~G~~ 219 (411)
T PRK10680 141 EDISQGAVVFPAGTRLTTAELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQ-PLGDGQIYDTNRLAVHLMLEQLGCE 219 (411)
T ss_pred cccCCCCEEECCcCCCCHHHHHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCC-CCCCCEEEEhHHHHHHHHHHHCCCE
Confidence 599999999999999999999999999999999999999999999999999887 3332
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||+++|+++|+++.++||+||||||+|+|++||++++++ ++| +++||+++||||||++||.++++|||+|
T Consensus 220 ~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~G~~D~~~~al~-~lG-~~~f~~v~~kPGkp~~~g~~~~~~v~gL 297 (411)
T PRK10680 220 VINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILE-ELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGL 297 (411)
T ss_pred EEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCCCCCcchHHHHHH-hcC-cEEEEEEEEecCcceEEEEECCeEEEEC
Confidence 6899999999999999888899999999999999999999999 899 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCC-ceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchh
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSP-ALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLS 214 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~-~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~ 214 (248)
||||.||+++|+.|+.|+|++|+|.+.... +.+++++..+++++.++++|+|+++....+| .+.+.+.++|+|+++++
T Consensus 298 PGnP~sa~~~~~~~v~P~l~~l~g~~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~~~~~G-~~~~~~~~~~~s~~l~s 376 (411)
T PRK10680 298 PGNPVSAALTFYQLVQPLLAKLSGNTASGLPPRQRVRTASRLKKTPGRLDFQRGILQRNADG-ELEVTTTGHQGSHIFSS 376 (411)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCCcCCCccEEEEeCCCccCCCCCcEEEEEEEEEcCCC-eEEEEECCCCCCHHHHH
Confidence 999999999999999999999999764322 2688999999999999999999999763344 47788888999999999
Q ss_pred cccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCC
Q psy8242 215 CKSCNGFAILPKATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 215 l~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
|++||||+++|++. +.+++|+.|+|++|+.|
T Consensus 377 l~~an~li~ip~~~--~~~~~G~~V~v~~~~~~ 407 (411)
T PRK10680 377 FSLGNCFIVLERER--GNVEVGEWVEVEPFNAL 407 (411)
T ss_pred HHhCCEEEEECCCC--CccCCCCEEEEEEehHh
Confidence 99999999999997 78999999999998765
No 3
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=100.00 E-value=2e-58 Score=430.06 Aligned_cols=238 Identities=43% Similarity=0.753 Sum_probs=222.4
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 132 edi~~G~~ll~~G~~l~p~~i~~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~-~~~~g~i~dsn~~~l~~~l~~~G~~ 210 (394)
T cd00887 132 EDIKAGDVLLPAGTRLTPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGE-PLAPGQIYDSNSYMLAALLRELGAE 210 (394)
T ss_pred CccCCCCEEECCCCCCCHHHHHHHHhCCCCEEEEecCCEEEEEeCCCcccCCCC-CCCCCEEEEChHHHHHHHHHHCCCE
Confidence 699999999999999999999999999999999999999999999999998886 3322
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+++++++ .+|++++||+++|+||||+++|.+++++||+|
T Consensus 211 ~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g~~D~~~~al~-~~g~~~~f~gv~~kPG~p~~~g~~~~~~v~~L 289 (394)
T cd00887 211 VVDLGIVPDDPEALREALEEALEEADVVITSGGVSVGDYDFVKEVLE-ELGGEVLFHGVAMKPGKPLAFGRLGGKPVFGL 289 (394)
T ss_pred EEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCCcchhHHHHHH-hCCCeEEEEEEEEecCCCEEEEEECCEEEEEC
Confidence 6899999999999999998999999999999999999999999 89889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||.||+++|+.|+.|+|++|+|......+.+++++.++++++.++++|+|+++...+ + .+.+.|...++|++++++
T Consensus 290 PG~P~sa~~~~~~~v~p~l~~l~g~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~s~~l~~l 367 (394)
T cd00887 290 PGNPVSALVTFELFVRPALRKLQGAPEPEPPRVKARLAEDLKSKPGRREFLRVRLERDE-G-GLVVAPPGGQGSGLLSSL 367 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCCcCCCCCCcEEEEEEEEecC-C-eEEEEECCCCCcHHHHHH
Confidence 99999999999999999999999976555667999999999999999999999998653 3 377889999999999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEc
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILT 244 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll 244 (248)
++||||+++|++. +.+++|+.|+|++|
T Consensus 368 ~~a~g~~~ip~~~--~~~~~G~~v~v~~~ 394 (394)
T cd00887 368 ARADGLIVIPEGV--EGLEAGEEVEVLLL 394 (394)
T ss_pred hhCCEEEEECCCC--CccCCCCEEEEEEC
Confidence 9999999999987 78999999999986
No 4
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=2.1e-58 Score=431.75 Aligned_cols=235 Identities=30% Similarity=0.462 Sum_probs=216.1
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 157 ed~~~G~~ll~~G~~l~p~~i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~-~~~~g~i~dsN~~~L~a~l~~~G~~ 235 (419)
T PRK14690 157 EDVIAGDVALPAGRRLTPADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGA-LAEVGQIYDANRPMLLALARRWGHA 235 (419)
T ss_pred cccCCCCEEECCCCCCCHHHHHHHHhCCCCeeEeecCCEEEEEEccccccCCCC-CCCCCeEEeCHHHHHHHHHHHCCCE
Confidence 599999999999999999999999999999999999999999999999999876 3322
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|++++++||+||||||+|+|++|+++++++ ++| +++||+|+||||||++||+++++|||+|
T Consensus 236 v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G~~D~v~~~l~-~~G-~~~~~~v~mkPGkp~~~~~~~~~pv~gL 313 (419)
T PRK14690 236 PVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAGDEDHVSALLR-EAG-AMQSWRIALKPGRPLALGLWQGVPVFGL 313 (419)
T ss_pred EEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCCCcchHHHHHH-hcC-CEEEcceeecCCCceEEEEECCeEEEEC
Confidence 6899999999999999999999999999999999999999999 898 8999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||+||+++|++|+.|+|++|+|.....++.+++++..++++++++++|+|+++. +| .+.+...++|+++++|
T Consensus 314 PGnP~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~---~g---~~~~~~~~~s~~l~~l 387 (419)
T PRK14690 314 PGNPVAALVCTLVFARPAMSLLAGEGWSEPQGFTVPAAFEKRKKPGRREYLRARLR---QG---HAEVFRSEGSGRISGL 387 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEEeCCCccCCCCCcEEEEEEEE---CC---EEEECCCCCCHHHHHH
Confidence 99999999999999999999999975433446889999999999999999999986 24 2345677899999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEcCC
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILTKA 246 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll~~ 246 (248)
++||||+++|++. +.+++|+.|+|++|++
T Consensus 388 ~~an~li~ip~~~--~~~~~G~~V~v~~~~~ 416 (419)
T PRK14690 388 SWAEGLVELGDGA--RRIAPGDPVRFIPYGS 416 (419)
T ss_pred HhCCEEEEECCCC--CccCCCCEEEEEEecC
Confidence 9999999999997 7899999999999864
No 5
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.1e-58 Score=439.80 Aligned_cols=235 Identities=33% Similarity=0.511 Sum_probs=217.9
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+||+||++|+.+|+||+||||+||+|||||+++++ ++.+
T Consensus 143 eDi~~Gelll~~G~~L~p~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~-~l~~G~I~dsNs~~L~a~l~~~G~~ 221 (546)
T PRK14497 143 SDIPKGSIILRKGEVISHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGN-SLSPGKIYESNLHYLYSKLKSEGYK 221 (546)
T ss_pred cccCCCCEEECCCCCCCHHHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCC-CCCCCcEEEhHHHHHHHHHHHCCCE
Confidence 599999999999999999999999999999999999999999999999999887 3333
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|++++++||+||||||+|+|++||++++++ ++| +++||+|+||||||+++|.++++|||+|
T Consensus 222 v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~G~~D~~~~al~-~lG-~v~f~GV~ikPGKP~~~g~~~gkpV~gL 299 (546)
T PRK14497 222 IVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSAGEKDFVHQAIR-ELG-NIIVHGLKIKPGKPTILGIVDGKPVIGL 299 (546)
T ss_pred EEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccCCCCccHHHHHh-hcC-cEEEcceeecCCCcEEEEEECCEEEEEc
Confidence 6899999999999999999999999999999999999999999 899 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCC--CCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhch
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSS--HPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLL 213 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~--~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~ 213 (248)
||||.||+++|+.|+.|+|++|+|.. ....+.++|++..++.++.+|++|+++++... ++ .+++.|+. ++|++++
T Consensus 300 PG~P~Sa~v~f~~fV~P~L~~l~G~~~~~~~~~~v~a~l~~~i~s~~gr~~fv~v~l~~~-~g-~~~a~Pl~-~gSg~is 376 (546)
T PRK14497 300 PGNIVSTMVVLNMVILEYLKSLYPSRKEILGLGKIKARLALRVKADEHRNTLIPVYLFKS-DN-SYYALPVP-FDSYMVG 376 (546)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCcccCCCceEEEEeCCccCCCCCceEEEEEEEEec-CC-EEEEEecC-CCcHHHH
Confidence 99999999999999999999999943 22445799999999999999999999998764 33 48899987 5899999
Q ss_pred hcccCcEEEEEeCCCCCcCcCCCCEEEEEEc
Q psy8242 214 SCKSCNGFAILPKATTKKTLEKNSLVNVILT 244 (248)
Q Consensus 214 ~l~~an~li~ip~~~~~~~~~~G~~V~v~ll 244 (248)
+|++||||+++|++. + +++|+.|+|++|
T Consensus 377 sL~~AdG~i~ip~~~--~-~~~Ge~V~V~l~ 404 (546)
T PRK14497 377 TFSLTDGYIMLGPNE--E-IEEGKEVEVDLK 404 (546)
T ss_pred HHHhCCEEEEECCCC--C-cCCCCEEEEEEE
Confidence 999999999999985 4 999999999987
No 6
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=100.00 E-value=8.5e-57 Score=437.03 Aligned_cols=242 Identities=37% Similarity=0.601 Sum_probs=224.1
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 331 eD~~~Ge~ll~~G~~i~p~~i~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~-~~~~g~i~dsn~~~L~~~l~~~G~~ 409 (597)
T PRK14491 331 EDLAQGQVALAAGTRLSAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGE-TLKPNCIYDSNRFTIKAMAKKLGCE 409 (597)
T ss_pred cccCCCCEeECCcCCCCHHHHHHHHHCCCCeEEeccCCEEEEEecCCeeccCCC-cCCCCcEEeCCHHHHHHHHHHCCCE
Confidence 599999999999999999999999999999999999999999999999999886 3222
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+++++++ ++| +++||+++|+||||+++|.++++|||+|
T Consensus 410 v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s~G~~D~~~~al~-~lG-~i~f~~v~~kPGkp~~~g~~~~~~v~~L 487 (597)
T PRK14491 410 VIDLGIIEDSEAALEATLEQAAAQADVVISSGGVSVGDADYIKTALA-KLG-QIDFWRINMRPGRPLAFGQIGDSPFFGL 487 (597)
T ss_pred EEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccCCCcccHHHHHH-hcC-cEEEEEEEeecCCcEEEEEECCEEEEEc
Confidence 6899999999999999999999999999999999999999999 899 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||.||+++|+.|+.|+|++|+|.....++.+++.+..+++++++|++|+|+++..+.+| .+++.+.++++|+++++|
T Consensus 488 PGnP~aa~~~~~~~v~P~l~~l~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~~~g-~~~~~~~~~~~s~~l~~l 566 (597)
T PRK14491 488 PGNPVAVMVSFLQFVEPALRKLAGEQNWQPLLFPAIADETLRSRQGRTEFSRGIYHLGADG-RLHVRTTGKQGSGILSSM 566 (597)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEeCCccCCCCCCcEEEEEEEEEcCCC-eEEEEeCCCCCcHHHHHH
Confidence 9999999999999999999999997654455789999999999999999999998865445 377788888999999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCCC
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILTKAFY 248 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~~ 248 (248)
++||||+++|++. +.+++|+.|+|++|.+|.
T Consensus 567 ~~an~li~ip~~~--~~~~~G~~V~v~~~~~~~ 597 (597)
T PRK14491 567 SEANCLIEIGPAA--ETVNAGETVTIQPLAGLL 597 (597)
T ss_pred HhCCEEEEECCCC--CccCCCCEEEEEEecCCC
Confidence 9999999999997 789999999999998763
No 7
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=100.00 E-value=5.7e-55 Score=427.49 Aligned_cols=243 Identities=44% Similarity=0.741 Sum_probs=220.0
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++..+.+
T Consensus 145 ed~~~G~~ll~~G~~l~p~~i~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~ 224 (659)
T PLN02699 145 CDIEKDAKVLKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCK 224 (659)
T ss_pred cccCCCCEEECCcCCCCHHHHHHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCE
Confidence 59999999999999999999999999999999999999999999999999887521211
Q ss_pred ----ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCC-----
Q psy8242 60 ----GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGN----- 129 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~----- 129 (248)
++++||++.|+++|+++++ ++|+||||||+|+|++|+++++++ .+| +++||+|+||||||+++|.+++
T Consensus 225 v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~G~~D~v~~~l~-~~G-~i~f~gv~~kPGkp~~~a~~~~~~~~g 302 (659)
T PLN02699 225 VVDLGIARDDEEELERILDEAISSGVDILLTSGGVSMGDRDFVKPLLE-KRG-TVYFSKVLMKPGKPLTFAEIDAKSAPS 302 (659)
T ss_pred EEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCCCCCccHHHHHH-hcC-cceEEEEEecCCCceeeEEeccccccc
Confidence 6899999999999999875 799999999999999999999999 788 9999999999999999999875
Q ss_pred ----EEEEEcCCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEe-CCC---ceEEE
Q psy8242 130 ----KLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYN-PSE---EHLLA 201 (248)
Q Consensus 130 ----~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~-~~~---~~~~a 201 (248)
++||+|||||.||+++|++|+.|+|++|+|......+.++|++.+++.+++++++|+|+++... +++ ..+.+
T Consensus 303 ~~~~~~v~gLPGnP~sa~~~f~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~~~~~~~~g~~~~~~~~ 382 (659)
T PLN02699 303 NSKKMLAFGLPGNPVSCLVCFNLFVVPAIRYLAGWSNPHLLRVQARLREPIKLDPVRPEFHRAIIRWKLNDGSGNPGFVA 382 (659)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcccCCCCCcEEEEEEEEEecCCCccccceEE
Confidence 6999999999999999999999999999998654455789999999999999999999998752 222 13778
Q ss_pred EEcCCCCchhchhcccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCC
Q psy8242 202 YSTGHQLSSKLLSCKSCNGFAILPKATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 202 ~~~~~~~s~~l~~l~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
.+.++|+|+++++|++||||+++|++. +.+++|+.|+|++|+++
T Consensus 383 ~~~~~~~S~~i~sl~~an~li~ip~~~--~~~~~G~~V~v~~l~~~ 426 (659)
T PLN02699 383 ESTGHQMSSRLLSMKSANALLELPATG--NVLSAGTSVSAIIISDI 426 (659)
T ss_pred EeCCCCCcHHHHHHHhCCEEEEECCCC--CccCCCCEEEEEEeccc
Confidence 899999999999999999999999997 78999999999999654
No 8
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=100.00 E-value=1.8e-53 Score=417.74 Aligned_cols=239 Identities=37% Similarity=0.579 Sum_probs=221.2
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.++++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 150 ~d~~~G~~l~~~g~~i~p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~-~~~~g~i~dsn~~~l~~~l~~~g~~ 228 (633)
T PRK14498 150 EDIVAGELILPKGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGE-PLKPGKIYDVNSYTLAAAVEEAGGE 228 (633)
T ss_pred CccCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEecCcEEEEEecCccccCCCC-CCCCCEEEEChHHHHHHHHHHCCCE
Confidence 589999999999999999999999999999999999999999999999998876 2222
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+++++++ .+| +++||+++|+||+|+++|.+++++||+|
T Consensus 229 ~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g~~D~~~~~l~-~~g-~~~~~~v~~~PG~~~~~g~~~~~~v~~L 306 (633)
T PRK14498 229 PVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAGAGDVTYRVIE-ELG-EVLVHGVAIKPGKPTILGVIGGKPVVGL 306 (633)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCCCcccHHHHHH-hcC-CEEEeeEeecCCCCEEEEEECCEEEEEC
Confidence 6899999999999999988999999999999999999999999 899 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||.||+++|++|+.|+|++++|.+....+.+++++.+++++++++++|+|+++.+.+ | .+++.|.. ++|++++++
T Consensus 307 PG~p~aa~~~~~~~v~P~l~~l~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-g-~~~~~~~~-~~s~~~~~l 383 (633)
T PRK14498 307 PGYPVSALTIFEEFVAPLLRKLAGLPPPERATVKARLARRVRSELGREEFVPVSLGRVG-D-GYVAYPLS-RGSGAITSL 383 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEEeCCccCCCCCccEEEEEEEEeeC-C-eEEEEECC-CCCHHHHHH
Confidence 99999999999999999999999987544457899999999999999999999998753 4 37788887 689999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCC
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
++||||+++|++. +.+++|+.|++++|.+.
T Consensus 384 ~~an~~~~~~~~~--~~~~~G~~v~~~~~~~~ 413 (633)
T PRK14498 384 VRADGFIEIPANT--EGLEAGEEVEVELFGPL 413 (633)
T ss_pred HhCCEEEEECCCC--cccCCCCeEEEEEecCc
Confidence 9999999999987 77999999999999764
No 9
>KOG2371|consensus
Probab=100.00 E-value=3.4e-39 Score=288.53 Aligned_cols=226 Identities=42% Similarity=0.665 Sum_probs=199.6
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|++ |+.++++|+.++|..|++|+++|+.++++|++|+|+|++||+|+..+.+ +.|
T Consensus 154 sDi~-~e~i~k~~~~l~p~si~~l~~~gi~~v~iykkpvVtV~sTgSel~~~d~--~~pg~v~~~n~s~l~~l~~~~Gf~ 230 (411)
T KOG2371|consen 154 SDIK-GEIILKKGHHLDPSSIGLLHALGIVQVEIYKKPVVTVSSTGSELNSPDR--SGPGMVRDSNRSQLLELFQEHGFT 230 (411)
T ss_pred cccc-ceeeccccccCCcccceehhhccccccceecccEEEEeeccccccCccc--cCCceeeecchHHHHHHHHHhCcc
Confidence 4788 9999999999999999999999999999999999999999999998864 222
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEE-EEEeCC-----
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTT-FATLGN----- 129 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~-~g~~~~----- 129 (248)
++++||.+.++++|.++.+.+|+||||||+|+|++|++++++. .+++++.|..|.|+||.|+. ||.++.
T Consensus 231 ~i~~gvv~D~~~~i~e~L~e~~~~aDvIlTtGGvsm~~~D~~~~a~~-~l~f~i~~g~V~mkpgl~~TsfA~l~~~gir~ 309 (411)
T KOG2371|consen 231 AIDAGVVPDDVTRIKEKLREASSFADVILTTGGVSMGPRDVTKEALK-VLEFEIHLGRVDMKPGLPITSFATLSRAGIRG 309 (411)
T ss_pred ccccccccCcHHHHHHHHHHhhhhccEEEecCCccccchhhhhhHhh-hhheeeecceeeccCCCcccceeeeecccccc
Confidence 7899999999999999999999999999999999999999999 89999999999999999998 988763
Q ss_pred -EEEEEcCCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCC
Q psy8242 130 -KLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQL 208 (248)
Q Consensus 130 -~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~ 208 (248)
|.+|+|||||++|++++++|+.|+||.|.|+.... +...|++|.|+....+......++...+.|-
T Consensus 310 ~k~i~~lPGnpvsAvv~c~lf~~PaLr~m~g~~~~~-------------~ld~r~e~~r~i~~~~~~l~~~~a~s~gNqi 376 (411)
T KOG2371|consen 310 PKLIFNLPGNPVSAVVECNLFLLPALRHMEGQLKET-------------SLDDRPEHVRAISHETEFLPARWAQSTGNQI 376 (411)
T ss_pred ceEEEECCCCcchhhhhhHHHHHHHHHHHhcccccc-------------ccCcchhhccccccccccCCcchhhhccccc
Confidence 99999999999999999999999999999974321 2234788888887433333224788889999
Q ss_pred chhchhcccCcEEEEEeCCCCCcCcCCCCEEEEEEc
Q psy8242 209 SSKLLSCKSCNGFAILPKATTKKTLEKNSLVNVILT 244 (248)
Q Consensus 209 s~~l~~l~~an~li~ip~~~~~~~~~~G~~V~v~ll 244 (248)
|+.+.++..|++++.+|+.+. ..+.+|+.|++..+
T Consensus 377 ss~l~~~~~a~~l~~L~~ks~-~~~~~g~vv~~~v~ 411 (411)
T KOG2371|consen 377 SSRLGSEVGAGVLLILPAKSN-TCFSAGEVVDARVL 411 (411)
T ss_pred cccccchhhccceeecccccc-cccccCCeeeeeeC
Confidence 999999999999999999873 57899999987653
No 10
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.98 E-value=5e-32 Score=244.73 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=137.7
Q ss_pred CccCCCEEecCCceeCHHHH---------HHHHhCCCCeEEeecCCeEEEEecCCcccCCCC-CCCCC------------
Q psy8242 2 DIRKGATILEEGNLIGPPEL---------GLLASVGVTSITVYKKPIIHILSTGNELDEPDA-HVLKP------------ 59 (248)
Q Consensus 2 D~~~G~~ll~~G~~l~p~~i---------~~Las~Gi~~V~V~~~prV~iistG~El~~~~~-~~~~~------------ 59 (248)
.+++|+.| +|++|-|..+ +++++.|+.+|.||++|||+||+||||+..... +...+
T Consensus 117 ~v~~g~~v--A~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~ 194 (312)
T cd03522 117 PVEAGQMV--ATVKIIPLAVPEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVE 194 (312)
T ss_pred EeCCCCEE--EEEEEeeeecCHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCE
Confidence 36889998 7899999886 678889999999999999999999999875542 23332
Q ss_pred ----ccccCCHHHHHHHHHHhcCC-CcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEE
Q psy8242 60 ----GICRDDPDLLLQCLKSNLAS-CDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFC 134 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~-~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~ 134 (248)
.+++||++.|+++|++++++ +|+||||||+|++++|+++++++ .+|.+++||+++|+||+|+++|+++++|||+
T Consensus 195 v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~~D~tp~Ai~-~~G~ei~~~Gv~v~PG~~l~~g~~~~~pVig 273 (312)
T cd03522 195 LVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDPDDVTPAAIR-AAGGEVIRYGMPVDPGNLLLLGYLGGVPVIG 273 (312)
T ss_pred EEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccCCcchHHHHHH-hcCceEEEeeecccCCceEEEEEECCEEEEE
Confidence 68999999999999999876 99999999999999999999999 8998999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCC
Q psy8242 135 LPGNPVSAMVTCHLFVLPALKALAGSS 161 (248)
Q Consensus 135 LPG~P~aa~~~~~~~v~P~l~~l~G~~ 161 (248)
|||||.|+..++..++.|.+ +.|.+
T Consensus 274 LPG~p~s~~~t~~d~VLprl--lag~~ 298 (312)
T cd03522 274 LPGCARSPKLNGFDLVLPRL--LAGER 298 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHH--HcCCC
Confidence 99999999988877788866 45643
No 11
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=99.97 E-value=6.7e-30 Score=207.46 Aligned_cols=112 Identities=42% Similarity=0.741 Sum_probs=104.1
Q ss_pred CeEEEEecCCcccCCCCCCCCC-------------------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q psy8242 38 PIIHILSTGNELDEPDAHVLKP-------------------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMG 92 (248)
Q Consensus 38 prV~iistG~El~~~~~~~~~~-------------------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g 92 (248)
|||+|++|||||+++++ ++.. ++++||++.|+++|+++.+++|+||||||+|+|
T Consensus 1 prv~ii~tGdEl~~~~~-~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g 79 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQ-PLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG 79 (144)
T ss_pred CEEEEEEcCcccccCCC-CCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 79999999999998665 2211 689999999999999998899999999999999
Q ss_pred CCchHHHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHHHHHHHHHHHHH
Q psy8242 93 DKDYLKDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLP 152 (248)
Q Consensus 93 ~~D~~~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P 152 (248)
++|+++++++ .+| +.+|+++ .+|||+|+.+|.+++++||+|||||.|++.+|+.|+.|
T Consensus 80 ~~D~t~~ai~-~~g-~~~~~gv~~~~~~~~~~PG~~~~~~~~~~~~v~~LPG~P~aa~~~~~~~v~p 144 (144)
T TIGR00177 80 PRDVTPEALE-ELG-EKEIPGFGEYFTAVLSRPGKPATAGVRGGTLIFGLPGNPVSALVTFEVLVLP 144 (144)
T ss_pred CCccHHHHHH-HhC-cEEEeeeccccchhhCCCCCceEEEEECCEEEEECCCCHHHHHHHHHHHccC
Confidence 9999999999 788 9999999 99999999999999999999999999999999999876
No 12
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.96 E-value=2.3e-29 Score=201.59 Aligned_cols=114 Identities=32% Similarity=0.568 Sum_probs=103.7
Q ss_pred eEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHH
Q psy8242 39 IIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDIL 101 (248)
Q Consensus 39 rV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l 101 (248)
||+||+||||++.... +.+.+ .+++||+++|+++++++++++|+||||||+|+|++|++++++
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~D~t~~ai 80 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGRRDVTPEAL 80 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCcchHHHH
Confidence 6899999999986442 23332 689999999999999999889999999999999999999999
Q ss_pred HHhcCCceeee--eeeeecCCcEEEEEeCCEEEEEcCCChHHHHHHHHHHHHHHH
Q psy8242 102 VTDLGASIHFG--RVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPAL 154 (248)
Q Consensus 102 ~~~~g~~~~f~--~v~~~PG~p~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l 154 (248)
+ .+| +..|| +++|+||+|+++|..+++++|+|||||.|+..+|+.|+.|+|
T Consensus 81 ~-~~g-~~~~~g~~~~~~pg~~~~~~~~~~~~i~~LPG~p~a~~~~~~~~v~p~l 133 (133)
T cd00758 81 A-ELG-EREAHGKGVALAPGSRTAFGIIGKVLIINLPGSPKSALTTFEALVLPAL 133 (133)
T ss_pred H-Hhc-CEEeccCcccccCCCceEEEEECCEEEEECCCCHHHHHHHHHHhheecC
Confidence 9 787 77888 999999999999999999999999999999999999999975
No 13
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.96 E-value=9.3e-30 Score=210.74 Aligned_cols=124 Identities=21% Similarity=0.316 Sum_probs=111.1
Q ss_pred ecCCeEEEEecCCcccCCCCCCCCC----------------ccccCCHHHHHHHHHHhc--CCCcEEEEcCCCCCCCCch
Q psy8242 35 YKKPIIHILSTGNELDEPDAHVLKP----------------GICRDDPDLLLQCLKSNL--ASCDVIISTGSVSMGDKDY 96 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~~~~~----------------~~v~Dd~~~i~~~l~~a~--~~~DvvittGG~s~g~~D~ 96 (248)
|+++||+||+||||+....+ .+++ ++++||++.|+++|++++ +++|+||||||+|+|++|+
T Consensus 2 ~~~~rv~vit~~d~~~~~~d-~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~ 80 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDD-TSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDV 80 (163)
T ss_pred CCccEEEEEEEeCcCCccCC-CcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCC
Confidence 57899999999999875433 4433 689999999999999985 4799999999999999999
Q ss_pred HHHHHHHhc------CCceeeeeeeeec-CCcEE-----EEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhcCC
Q psy8242 97 LKDILVTDL------GASIHFGRVNMKP-GKPTT-----FATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGS 160 (248)
Q Consensus 97 ~~~~l~~~~------g~~~~f~~v~~~P-G~p~~-----~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G~ 160 (248)
++++++ .+ |.+.+||+++|+| |+|++ +|.++++++|+|||||.||+.+|+.|+.|+|++..+.
T Consensus 81 t~eal~-~l~~~~l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~ 155 (163)
T TIGR02667 81 TPEALE-PLFDKTVEGFGELFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDARHRP 155 (163)
T ss_pred cHHHHH-HHHCCcCCcHHHHHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 77 8778999999999 99975 9999999999999999999999999999999987653
No 14
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.95 E-value=4.7e-28 Score=198.31 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=106.3
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCCchHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDKDYLK 98 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~D~~~ 98 (248)
.|++||++|||+..... +.+.+ ++++||++.|+++|+++++ ++|+||||||+|+|++|+++
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~ 80 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTP 80 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcH
Confidence 48999999999998664 33333 6899999999999999988 89999999999999999999
Q ss_pred HHHHHhc------CCceeeeeeeeecCCcEEE-----EEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhcC
Q psy8242 99 DILVTDL------GASIHFGRVNMKPGKPTTF-----ATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAG 159 (248)
Q Consensus 99 ~~l~~~~------g~~~~f~~v~~~PG~p~~~-----g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G 159 (248)
++++ ++ |.+..|++++|+||++.++ |..+++|+|+|||||.|++++|++ +.|+|+++..
T Consensus 81 ~al~-~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g~~~~~~v~~LPG~P~aa~~~~~~-v~P~l~~~~~ 150 (152)
T cd00886 81 EATR-PLLDKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFNLPGSPKAVREALEV-ILPELPHLLD 150 (152)
T ss_pred HHHH-HHhCCcCccHHHHHHHhhcccCCcEEEechhheEECCEEEEECCCCHHHHHHHHHH-HHHHHHHHHH
Confidence 9999 67 5467899999999998865 456899999999999999999999 9999999864
No 15
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.94 E-value=1.4e-27 Score=193.51 Aligned_cols=115 Identities=40% Similarity=0.642 Sum_probs=101.6
Q ss_pred EEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHH
Q psy8242 41 HILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVT 103 (248)
Q Consensus 41 ~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~ 103 (248)
|||+|||||+.... +.+.+ .+++||++.|+++|+++++++|+||||||+|+|++|+++++++
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~D~t~~a~~- 79 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPDDVTPEALA- 79 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTTCHHHHHHH-
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccCCcccHHHH-
Confidence 79999999996543 23322 6899999999999999999999999999999999999999999
Q ss_pred hcCCc------eeeeeeeeecCCcEEEEEe---CCE---EEEEcCCChHHHHHHHHHHHHHHHHH
Q psy8242 104 DLGAS------IHFGRVNMKPGKPTTFATL---GNK---LIFCLPGNPVSAMVTCHLFVLPALKA 156 (248)
Q Consensus 104 ~~g~~------~~f~~v~~~PG~p~~~g~~---~~~---~v~~LPG~P~aa~~~~~~~v~P~l~~ 156 (248)
+++.+ .+||+++++||+|+.++.. +++ ++|+|||||.++..+|+.++.|+|++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 80 EAGGRELPGFEELFRGVSMRPGKPTGLAPGAYLSRKGGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp HHSSEE-HHHHHHHHHHHHHSTTTCETEGGGGGTSSETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccccChHHHHHHHHHhhcccceeeEEEeeCCCCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 77765 8899999999999999976 543 89999999999999999999999985
No 16
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.91 E-value=1.5e-24 Score=173.80 Aligned_cols=107 Identities=32% Similarity=0.475 Sum_probs=93.0
Q ss_pred EEEecCCcccCCCC--CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 41 HILSTGNELDEPDA--HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 41 ~iistG~El~~~~~--~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
+|++|||||++++. +...+ .+++||++.|+++|+++++++|+||||||+|+|++|+++++++
T Consensus 1 ~vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~ 80 (135)
T smart00852 1 AIISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPDDVTPEAVA 80 (135)
T ss_pred CEEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHH
Confidence 58999999998853 33333 5789999999999999998999999999999999999999999
Q ss_pred Hhc-CCceeeeeeeeecCCcEEE-----EEeC---CEEEEEcCCChHHHHHHHHH
Q psy8242 103 TDL-GASIHFGRVNMKPGKPTTF-----ATLG---NKLIFCLPGNPVSAMVTCHL 148 (248)
Q Consensus 103 ~~~-g~~~~f~~v~~~PG~p~~~-----g~~~---~~~v~~LPG~P~aa~~~~~~ 148 (248)
++ +.++.|++++|+||+++.+ +.+. ++++|+|||||.+|..+|+.
T Consensus 81 -~~~~~~~~~~~~~~~Pg~~~~~~~~~~~~~~g~~~~~i~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 81 -EALGKELPGFGEAMRPGGAPTVLANLSGTAPGFRGKLVFGLPGSPVAARAMLEL 134 (135)
T ss_pred -HHhCCcCCChhhhhcccCCccccccccCcCCeEeCcEEEECCCCHHHHHHHHHh
Confidence 55 5589999999999999877 5443 46999999999999999874
No 17
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=99.89 E-value=5.3e-23 Score=202.31 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=110.7
Q ss_pred cCCeEEEEecCCcccCCCC-CCC----------------CC-----ccccCCHHHHHHHHHHhc--CCCcEEEEcCCCCC
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVL----------------KP-----GICRDDPDLLLQCLKSNL--ASCDVIISTGSVSM 91 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~----------------~~-----~~v~Dd~~~i~~~l~~a~--~~~DvvittGG~s~ 91 (248)
.++||+||+||||+..+.. +.. +. ++++||++.|+++|++++ +++|+||||||+|+
T Consensus 457 ~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~ 536 (659)
T PLN02699 457 PEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGF 536 (659)
T ss_pred CCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccC
Confidence 4589999999999987653 111 11 589999999999999984 57999999999999
Q ss_pred CCCchHHHHHHHhc------CC--ceeeeeeeeecCCcE---EEEEeCCEEEEEcCCChHHHHHHHHHHH---HHHHHHh
Q psy8242 92 GDKDYLKDILVTDL------GA--SIHFGRVNMKPGKPT---TFATLGNKLIFCLPGNPVSAMVTCHLFV---LPALKAL 157 (248)
Q Consensus 92 g~~D~~~~~l~~~~------g~--~~~f~~v~~~PG~p~---~~g~~~~~~v~~LPG~P~aa~~~~~~~v---~P~l~~l 157 (248)
|++|+++++++ .+ |. +++||+++|+||+|+ ++|.+++++||+|||||.||+++|++|+ .|+|.++
T Consensus 537 g~~D~tpeal~-~l~~k~~PG~~~~~~~~~~~~~Pg~~lSR~~~g~~~~~lv~~LPG~P~aa~~~~~~i~p~l~~~l~~l 615 (659)
T PLN02699 537 TPRDVTPEATK-EVIQKETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQI 615 (659)
T ss_pred CCCcchHHHHH-HHHhccCCcHHHHHHHhhhcccCCceeeeeEEEEECCEEEEECCCCHHHHHHHHHHHHHhHHHHHHHh
Confidence 99999999999 66 65 688999999999997 9999999999999999999999999999 9999999
Q ss_pred cCCC
Q psy8242 158 AGSS 161 (248)
Q Consensus 158 ~G~~ 161 (248)
.|..
T Consensus 616 ~g~~ 619 (659)
T PLN02699 616 KGDK 619 (659)
T ss_pred cCCC
Confidence 8864
No 18
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.87 E-value=7.9e-22 Score=174.89 Aligned_cols=122 Identities=26% Similarity=0.398 Sum_probs=106.8
Q ss_pred cCCeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHH
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLK 98 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~ 98 (248)
.+|||+||+|||||+.... +.+.+ .+++||++.|+++|+++++++|+||||||+|++.+|+|+
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~dD~t~ 81 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYDDKTN 81 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChhhhHH
Confidence 4799999999999986553 33332 579999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeee-----------------------eeeeec-C----------CcEEEEEeCCEEEEEcCCChHHHHH
Q psy8242 99 DILVTDLGASIHFG-----------------------RVNMKP-G----------KPTTFATLGNKLIFCLPGNPVSAMV 144 (248)
Q Consensus 99 ~~l~~~~g~~~~f~-----------------------~v~~~P-G----------~p~~~g~~~~~~v~~LPG~P~aa~~ 144 (248)
+++++.+|.++.+| +.++.| | .|-.+...+++++|+|||+|.++..
T Consensus 82 eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~~~~~i~~LPG~P~e~~~ 161 (264)
T PRK01215 82 EGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEHGGKDIVALPGVPREMEA 161 (264)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEECCEEEEEeCCChHHHHH
Confidence 99995558777777 688888 6 5667777889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8242 145 TCHLFVLPALKAL 157 (248)
Q Consensus 145 ~~~~~v~P~l~~l 157 (248)
+|..++.|+|+++
T Consensus 162 m~~~~v~p~l~~~ 174 (264)
T PRK01215 162 IFENFVEPLLKNR 174 (264)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999886
No 19
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.86 E-value=2.3e-21 Score=175.07 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=101.0
Q ss_pred ecCC--eEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhc-CCCcEEEEcCCCCCCCC
Q psy8242 35 YKKP--IIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNL-ASCDVIISTGSVSMGDK 94 (248)
Q Consensus 35 ~~~p--rV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~-~~~DvvittGG~s~g~~ 94 (248)
.++| +++||.+|||+..... +.+.+ ++++||++.|+++|++++ +++|+||||||+|+|++
T Consensus 151 ~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~ 230 (312)
T PRK03604 151 RFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPR 230 (312)
T ss_pred ccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCC
Confidence 3456 6779999999976553 23332 689999999999999985 67999999999999999
Q ss_pred chHHHHHHHhcCCceeeeeee---------eecCC---cEEEEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhc
Q psy8242 95 DYLKDILVTDLGASIHFGRVN---------MKPGK---PTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 95 D~~~~~l~~~~g~~~~f~~v~---------~~PG~---p~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~ 158 (248)
|+++++++ .++ +..|++++ ++||+ |.++|..++++||+|||||.|+..+|++| .|.|.++.
T Consensus 231 D~tpeAl~-~lg-~~~~~Gvae~ir~~g~~~~Pga~lsr~~~G~~~~tlI~~LPG~P~aa~~~~~~l-lp~l~h~~ 303 (312)
T PRK03604 231 DVTPEALA-PLL-ERRLPGIAEALRSWGQGRTPTAMLSRLVAGMIGNSLVVALPGSPGGASDALAVL-LPALFHAF 303 (312)
T ss_pred ccHHHHHH-Hhc-CccccchHHHHHhcccCCCCCcccCcceEEEECCEEEEECCCCHHHHHHHHHHH-HHHHHHHH
Confidence 99999999 788 65666655 47997 67899999999999999999999999876 68877654
No 20
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.80 E-value=2.9e-19 Score=167.43 Aligned_cols=119 Identities=24% Similarity=0.313 Sum_probs=97.6
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDI 100 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~ 100 (248)
.||+||+|||||+.... +.+.+ .+++||++.|.++|+++++++|+||||||+|++++|+++++
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~dD~t~ea 80 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGPTSDDLTAET 80 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCCcccHHHH
Confidence 47999999999986553 33333 57999999999999999999999999999999999999999
Q ss_pred HHHhcC-------------------------------------CceeeeeeeeecCCcEEEEEe-CCEEEEEcCCChHHH
Q psy8242 101 LVTDLG-------------------------------------ASIHFGRVNMKPGKPTTFATL-GNKLIFCLPGNPVSA 142 (248)
Q Consensus 101 l~~~~g-------------------------------------~~~~f~~v~~~PG~p~~~g~~-~~~~v~~LPG~P~aa 142 (248)
+.+.+| .+++++.+.+.||. +... +++++|+|||+|.++
T Consensus 81 va~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~---~~~~~~~~~i~~LPG~P~e~ 157 (413)
T TIGR00200 81 IATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGM---FAVQLNRCLMLFTPGVPSEF 157 (413)
T ss_pred HHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCee---EEEecCCEEEEEeCCCcHHH
Confidence 964333 33445556666774 4444 479999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy8242 143 MVTCHLFVLPALKALAG 159 (248)
Q Consensus 143 ~~~~~~~v~P~l~~l~G 159 (248)
..+|+.++.|.|+++.+
T Consensus 158 ~~m~~~~v~p~l~~~~~ 174 (413)
T TIGR00200 158 RVMVEHEALPRLRERFS 174 (413)
T ss_pred HHHHHHHhhHHHHHhcC
Confidence 99999999999988754
No 21
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.74 E-value=6.8e-18 Score=143.18 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=88.0
Q ss_pred cCCeEEEEecCCcccCCCC-CCCCC------------------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCC
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVLKP------------------GICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDK 94 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~~~------------------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~ 94 (248)
.++|++||+++||+..... +..++ .+++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~r 81 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARR 81 (193)
T ss_pred CCcEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCC
Confidence 4689999999999886553 22222 4789999999999999985 7999999999999999
Q ss_pred chHHHHHHHhcCC------ceeeeeeeeecCCc-----EEEEEeCCEEEEEcCCChHHHHHHHH
Q psy8242 95 DYLKDILVTDLGA------SIHFGRVNMKPGKP-----TTFATLGNKLIFCLPGNPVSAMVTCH 147 (248)
Q Consensus 95 D~~~~~l~~~~g~------~~~f~~v~~~PG~p-----~~~g~~~~~~v~~LPG~P~aa~~~~~ 147 (248)
|+++++++ .+.. ...|+...++.+.. ...|..++++||+|||+|.++..+|+
T Consensus 82 DvTpeAv~-~l~~keipG~~e~~r~~s~~~~~~a~LSRa~agv~~~tlI~nLPGSp~a~~~~le 144 (193)
T PRK09417 82 DVTPEATL-AVADKEMPGFGEQMRQISLKFVPTAILSRQVAVIRGQSLIINLPGQPKSIKETLE 144 (193)
T ss_pred CcHHHHHH-HHhCCcCCcHHHHHHHHhcccccHHHhhcceeEEeCCEEEEECCCCHHHHHHHHH
Confidence 99999999 4432 23344444444332 24677899999999999999999998
No 22
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.71 E-value=7.9e-17 Score=134.30 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=92.7
Q ss_pred eEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHH
Q psy8242 39 IIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDIL 101 (248)
Q Consensus 39 rV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l 101 (248)
||+||+|||||..... +.+.+ .+++||++.|+++|+++++++|+||||||+|++.+|++++++
T Consensus 1 ~v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~ 80 (170)
T cd00885 1 TAEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTREAV 80 (170)
T ss_pred CEEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHH
Confidence 5899999999986553 33332 579999999999999999999999999999999999999999
Q ss_pred HHhcCCceeeee-----------------------eeee----------cCCcEEEE-EeCCEEEEEcCCChHHHHHHHH
Q psy8242 102 VTDLGASIHFGR-----------------------VNMK----------PGKPTTFA-TLGNKLIFCLPGNPVSAMVTCH 147 (248)
Q Consensus 102 ~~~~g~~~~f~~-----------------------v~~~----------PG~p~~~g-~~~~~~v~~LPG~P~aa~~~~~ 147 (248)
++.+|.++.++. .++- ||..-.+. ..+++.++.|||.|..+...|.
T Consensus 81 ~~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~~~r~a~~p~ga~~i~N~~G~apg~~~~~~~~~i~~lPG~P~e~~~m~~ 160 (170)
T cd00885 81 AKAFGRPLVLDEEALERIEARFARRGREMTEANLKQAMLPEGATLLPNPVGTAPGFSVEHNGKNVFLLPGVPSEMKPMLE 160 (170)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHhcCCccChhhhheecCCCCCEECcCCCCEeeEEEEEeCCeEEEEECCChHHHHHHHH
Confidence 966776666542 1222 22222222 2457899999999999999999
Q ss_pred HHHHHHHHH
Q psy8242 148 LFVLPALKA 156 (248)
Q Consensus 148 ~~v~P~l~~ 156 (248)
..+.|.|++
T Consensus 161 ~~~~~~l~~ 169 (170)
T cd00885 161 EEVLPRLRE 169 (170)
T ss_pred HHHHHHHhc
Confidence 988898764
No 23
>PRK03673 hypothetical protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=147.71 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=98.1
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDI 100 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~ 100 (248)
+||+||+|||||+.... +.+.+ .+++||++.|.++|+++++++|+||||||+|++.+|+|+++
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~a 81 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDDLSALA 81 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcccHHHH
Confidence 79999999999996553 33332 57999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeee-----------------------eeeecCCcEEE-----------EEeCCEEEEEcCCChHHHHHHH
Q psy8242 101 LVTDLGASIHFGR-----------------------VNMKPGKPTTF-----------ATLGNKLIFCLPGNPVSAMVTC 146 (248)
Q Consensus 101 l~~~~g~~~~f~~-----------------------v~~~PG~p~~~-----------g~~~~~~v~~LPG~P~aa~~~~ 146 (248)
+++.+|.++.+|. -++-|-....+ =..+++.+|.|||.|..+...|
T Consensus 82 vA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~LPGvP~Emk~M~ 161 (396)
T PRK03673 82 AATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMIDNPVGTACGFALQLNRCLMFFTPGVPSEFKVMV 161 (396)
T ss_pred HHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeeccCCCccCCcEEEEECCEEEEEECCChHHHHHHH
Confidence 9988887766541 12333322211 1346789999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy8242 147 HLFVLPALKALAG 159 (248)
Q Consensus 147 ~~~v~P~l~~l~G 159 (248)
+..+.|.|++..+
T Consensus 162 ~~~v~p~L~~~~~ 174 (396)
T PRK03673 162 EQEILPRLRERFS 174 (396)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999987643
No 24
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.65 E-value=1.1e-15 Score=143.76 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=96.1
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDI 100 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~ 100 (248)
.+++||+|||||..... +.+.+ .+++||++.|+++|+++.+++|+||||||+|++.+|+|+++
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt~dD~t~ea 80 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPTKDDLTKET 80 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCCCCccHHHH
Confidence 47999999999997653 33332 67999999999999999889999999999999999999999
Q ss_pred HHHhcCCceeeee-----------------------eeeecCCcEE-----------EEEeCCEEEEEcCCChHHHHHHH
Q psy8242 101 LVTDLGASIHFGR-----------------------VNMKPGKPTT-----------FATLGNKLIFCLPGNPVSAMVTC 146 (248)
Q Consensus 101 l~~~~g~~~~f~~-----------------------v~~~PG~p~~-----------~g~~~~~~v~~LPG~P~aa~~~~ 146 (248)
+++.+|.++.++. .++-|-.... +-..+++.+|.|||.|..+..+|
T Consensus 81 ~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~lPGvP~Em~~m~ 160 (414)
T PRK00549 81 VAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVLPNPVGTAPGMIIEVDGKTYIVLPGPPSELKPMF 160 (414)
T ss_pred HHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEECcCCCCcCCeEEEEECCEEEEEeCCCcHHHHHHH
Confidence 9955787666542 1223322222 22347789999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8242 147 HLFVLPALKAL 157 (248)
Q Consensus 147 ~~~v~P~l~~l 157 (248)
+.++.|.|++.
T Consensus 161 ~~~v~p~l~~~ 171 (414)
T PRK00549 161 EEYVVPYLSSA 171 (414)
T ss_pred HHHhHHHHHhh
Confidence 99999999864
No 25
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=99.60 E-value=2e-15 Score=108.03 Aligned_cols=72 Identities=33% Similarity=0.466 Sum_probs=60.5
Q ss_pred EEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhcccCcEEEEEeCCCCCcCcCCCCEEEEEEc
Q psy8242 169 KAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAILPKATTKKTLEKNSLVNVILT 244 (248)
Q Consensus 169 ~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l~~an~li~ip~~~~~~~~~~G~~V~v~ll 244 (248)
+|+|+++++++++|++|+|+++.. .+| .++++|++.|+|+++++|++||||++||++. +.+++||.|+|++|
T Consensus 1 ka~l~~~~~~~~~r~~~~r~~l~~-~~g-~~~~~p~~~~~S~~l~sl~~an~l~~ip~~~--~~~~~G~~V~v~ll 72 (72)
T PF03454_consen 1 KARLAEDIKKKPGRTEFLRVRLER-EDG-EYVVEPLGSQGSGMLSSLARANGLIVIPEGV--EGLEAGEEVEVILL 72 (72)
T ss_dssp EEEESS-EE-BTTSEEEEEEEEET-TTS-STEEEE-SSSSTSHTHHHHHBSEEEEEETT---SEE-TTEEEEEEE-
T ss_pred CcEeCCcccCCCCCeEEEEEEEEE-eCC-EEEEEECCCCCCHHHHhHhhCCEEEEeCCCC--CccCCCCEEEEEEC
Confidence 589999999999999999999983 334 4899999999999999999999999999997 77999999999986
No 26
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.60 E-value=5.1e-15 Score=122.25 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=97.0
Q ss_pred cCCeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCC-CcEEEEcCCCCCCCCchH
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLAS-CDVIISTGSVSMGDKDYL 97 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~-~DvvittGG~s~g~~D~~ 97 (248)
...|++|++..|-...... +..++ -+++||.+.|++++.+++.+ +|+||||||+|++++|.|
T Consensus 6 ~~~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvT 85 (169)
T COG0521 6 KPLRIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVT 85 (169)
T ss_pred cceeEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCC
Confidence 3467999998887753332 33333 57999999999999998876 999999999999999999
Q ss_pred HHHHHHhc-----CCceeeeeeeeec-CCcEE-----EEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHH
Q psy8242 98 KDILVTDL-----GASIHFGRVNMKP-GKPTT-----FATLGNKLIFCLPGNPVSAMVTCHLFVLPALKA 156 (248)
Q Consensus 98 ~~~l~~~~-----g~~~~f~~v~~~P-G~p~~-----~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~ 156 (248)
+++++.-+ |+.-+|+.+.+.= |...+ .|..++++||+|||+|.|+-.++..++.|.|..
T Consensus 86 pEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~~ 155 (169)
T COG0521 86 PEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELDY 155 (169)
T ss_pred HHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhccc
Confidence 99998322 4445688888776 55443 466889999999999999999999888898863
No 27
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=126.11 Aligned_cols=120 Identities=22% Similarity=0.349 Sum_probs=97.3
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDI 100 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~ 100 (248)
.+++||++||||..... +.+.. -+|+||++.|.++|+.+.+++|+||+|||.|+..+|+|.++
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~ 81 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDLTAEA 81 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHhHHHH
Confidence 47899999999998875 44433 47999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeee-----------------------eeeeecCCcEE-----------EEEeCCEEEEEcCCChHHHHHHH
Q psy8242 101 LVTDLGASIHFG-----------------------RVNMKPGKPTT-----------FATLGNKLIFCLPGNPVSAMVTC 146 (248)
Q Consensus 101 l~~~~g~~~~f~-----------------------~v~~~PG~p~~-----------~g~~~~~~v~~LPG~P~aa~~~~ 146 (248)
+++.+|.++..| +.++-|-.... +=..+++.++.|||.|.....+|
T Consensus 82 vAka~g~~lv~~~~al~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lPGvP~Em~~M~ 161 (255)
T COG1058 82 VAKALGRPLVLDEEALAMIEEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLPGVPSEMKPMF 161 (255)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCEeCCCCCCCCCeeEEecCCeEEEEeCCCCHHHHHHH
Confidence 998888766554 12333333221 11235789999999999999999
Q ss_pred HHHHHHHHHHh
Q psy8242 147 HLFVLPALKAL 157 (248)
Q Consensus 147 ~~~v~P~l~~l 157 (248)
+.++.|++...
T Consensus 162 e~~~~~~l~~~ 172 (255)
T COG1058 162 ENVLLPLLTGR 172 (255)
T ss_pred HHHHHHHhhcc
Confidence 99999998753
No 28
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.56 E-value=1.9e-14 Score=126.88 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=89.1
Q ss_pred CeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHH
Q psy8242 38 PIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKD 99 (248)
Q Consensus 38 prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~ 99 (248)
.+++||+|||||..... +.+.+ .+++||++.|.++|+++++ .+|+||||||+|++.+|+|++
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~e 80 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTML 80 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHH
Confidence 47899999999986553 33332 6799999999999999876 589999999999999999999
Q ss_pred HHHHhcCCceeeee------------------------------eeeecCCcEE-----------EEEeCCEEEEEcCCC
Q psy8242 100 ILVTDLGASIHFGR------------------------------VNMKPGKPTT-----------FATLGNKLIFCLPGN 138 (248)
Q Consensus 100 ~l~~~~g~~~~f~~------------------------------v~~~PG~p~~-----------~g~~~~~~v~~LPG~ 138 (248)
++++.+|.++.+|. .++-|=.... +=..+++.+|.|||.
T Consensus 81 ava~a~g~~l~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~kmA~~P~ga~~l~N~~g~ApG~~~~~~~~~v~~lPGv 160 (252)
T PRK03670 81 AVAEALGRELVLCEDCLERIKEFYEELYKKGLIDDPTLNEARKKMAYLPEGAEPLENTEGAAPGAYIEHKGTKIFVLPGM 160 (252)
T ss_pred HHHHHhCCCCcCCHHHHHHHHHHHHHhcccccccccccChHHHheeCCCCCCEECCCCCCcCceEEEEECCeEEEEeCCC
Confidence 99966775544331 1222211111 113456789999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy8242 139 PVSAMVTCHLFVLPALK 155 (248)
Q Consensus 139 P~aa~~~~~~~v~P~l~ 155 (248)
|..+...|+..+.|.|.
T Consensus 161 P~e~~~M~~~~v~p~l~ 177 (252)
T PRK03670 161 PREMKAMLEKEVLPRLG 177 (252)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 99999999987888763
No 29
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=84.83 E-value=1 Score=41.19 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=28.5
Q ss_pred EEecCCceeCHHHHHHHHhCCCCeEEeecC
Q psy8242 8 TILEEGNLIGPPELGLLASVGVTSITVYKK 37 (248)
Q Consensus 8 ~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~ 37 (248)
..++||++|+..+|..|.++|..+|.|++.
T Consensus 19 ~~~~kG~vi~~~di~~L~~~G~~~v~v~~~ 48 (312)
T cd03522 19 RAFKKGHVLTAEDIAALLAAGKEHVYVARL 48 (312)
T ss_pred ceecCCCCCCHHHHHHHHhCCCcEEEEEEC
Confidence 789999999999999999999999999875
No 30
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=84.77 E-value=0.27 Score=48.51 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=71.0
Q ss_pred eEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCC-cEEEEcCCCCCCC---------CchH
Q psy8242 31 SITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASC-DVIISTGSVSMGD---------KDYL 97 (248)
Q Consensus 31 ~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~-DvvittGG~s~g~---------~D~~ 97 (248)
.+.-..||.|+|++|.||+.+... ...+=++.+++.++++- .++ .++-.+-|++.|. +|++
T Consensus 58 ~~~~~~kP~IgIvns~~d~~p~h~------hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlI 131 (601)
T TIGR01196 58 PLGSMKRPNLAIITAYNDMLSAHQ------PFKNYPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVI 131 (601)
T ss_pred HHhccCCCEEEEEeccccCccccc------cHHHHHHHHHHHHHHCCCEeEEeCCcCccCCCccCCCcccchhhhcHHHH
Confidence 577789999999999999987665 34444566666666552 234 6666677777775 5666
Q ss_pred HHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 98 KDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 98 ~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
...++..+. .-.|.++ ++-||--+..+++++.|-+.+||-|+.
T Consensus 132 A~sie~~l~-~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGpM~ 181 (601)
T TIGR01196 132 AMSTAIGLS-HNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGPMV 181 (601)
T ss_pred HHHHHHHhc-CCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcC
Confidence 666652222 2235554 456777667778888999999998865
No 31
>PRK09054 phosphogluconate dehydratase; Validated
Probab=83.42 E-value=0.44 Score=47.07 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=70.5
Q ss_pred eEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCC-cEEEEcCCCCCCC---------CchH
Q psy8242 31 SITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASC-DVIISTGSVSMGD---------KDYL 97 (248)
Q Consensus 31 ~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~-DvvittGG~s~g~---------~D~~ 97 (248)
.+.-.+||.|+|++|.||+.+... ...+=++.+++.++++= ..+ .++-.+-|++.|. +|++
T Consensus 59 ~~~~~~kP~IgIvns~nd~~p~h~------~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlI 132 (603)
T PRK09054 59 ALKAMTRPNIGIVTAYNDMLSAHQ------PYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVI 132 (603)
T ss_pred HHHhcCCCEEEEEeccccCcCccc------cHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCCCcchhhhhhhHHHH
Confidence 366678999999999999987666 44444566777776651 234 6666777777776 4666
Q ss_pred HHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHHH
Q psy8242 98 KDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVSA 142 (248)
Q Consensus 98 ~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~aa 142 (248)
...++..+. .-.|.++ ++-||--+..+++++.|.+.+||-|+..
T Consensus 133 A~sie~~l~-~~~fDg~v~lg~CDKivPG~lMaA~r~g~lP~ifV~gGpM~~ 183 (603)
T PRK09054 133 AMSTAVALS-HNMFDAALLLGVCDKIVPGLLIGALSFGHLPAIFVPAGPMTS 183 (603)
T ss_pred HHHHHHHhh-cCCcceEEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcCC
Confidence 555552222 1234544 4567776677788888999999888753
No 32
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=2.7 Score=38.30 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=50.5
Q ss_pred HHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCcee-----eeeeeeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 69 LLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIH-----FGRVNMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 69 i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~-----f~~v~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
+++.++.+++ -.|+||||||. +..+.++ .+|+..+ +....++ -..+.++++..+ |..
T Consensus 70 lR~iia~LIr~~~idvvVTTgg~------l~hDi~~-~lg~~~~~G~~~~dD~~Lr---~~gi~RIgnv~v------p~e 133 (318)
T COG1899 70 LREIIADLIRNGLIDVVVTTGGN------LDHDIIK-ALGGPHYCGSFEVDDVELR---EEGINRIGNVFV------PNE 133 (318)
T ss_pred HHHHHHHHHHcCCeEEEEecCCc------hhHHHHH-HcCCCeeccCcCCCHHHHH---Hhccccccceec------ChH
Confidence 3444444443 37999999987 5566677 7774322 1111221 123456666665 789
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q psy8242 142 AMVTCHLFVLPALKALAGSS 161 (248)
Q Consensus 142 a~~~~~~~v~P~l~~l~G~~ 161 (248)
.+..|+.|++++++++.+.+
T Consensus 134 ~y~~~E~~i~~i~~~l~~~~ 153 (318)
T COG1899 134 EYEVFEEFIREILEKLLGIK 153 (318)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999998764
No 33
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=82.13 E-value=0.52 Score=46.63 Aligned_cols=116 Identities=15% Similarity=0.230 Sum_probs=72.7
Q ss_pred CHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCCcEEEEcCCCCCCC
Q psy8242 17 GPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASCDVIISTGSVSMGD 93 (248)
Q Consensus 17 ~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~DvvittGG~s~g~ 93 (248)
.+.+-++|.+.|+++=.- .||.|+|..|-+|+..... ++.+=.+.+++.+.++= .++..+-++-|.+.|.
T Consensus 14 ~a~~ra~l~a~G~~ded~-~kP~IgI~ns~~e~~pch~------hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgit~g~ 86 (615)
T PRK12448 14 MAGARALWRATGMKDEDF-GKPIIAVVNSFTQFVPGHV------HLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGH 86 (615)
T ss_pred cHHHHHHHHHcCCChHHh-CCCEEEEEeccccCcCchh------hHHHHHHHHHHHHHHcCCeeeEeccCcccCCcCcCC
Confidence 346679999999987665 6999999999999986654 33443445555554431 2345665566665554
Q ss_pred ---------CchHHHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 94 ---------KDYLKDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 94 ---------~D~~~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
+|++.+.++.... .-.|+++ ++-||.-+..++++ .|.+.+||-|+.
T Consensus 87 ~GM~ySL~SRelIAdsiE~~~~-a~~~Dg~V~i~~CDK~~PG~lMaaarln-iPsi~v~gGpm~ 148 (615)
T PRK12448 87 GGMLYSLPSRELIADSVEYMVN-AHCADAMVCISNCDKITPGMLMAALRLN-IPVVFVSGGPME 148 (615)
T ss_pred ccceechhhHHHHHHHHHHHhh-CCCcceEEEeccCCCchHHHHHHHHhcC-CCEEEEeCCCcC
Confidence 6777776662222 2235554 34566555555654 677777777654
No 34
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=74.99 E-value=1 Score=44.20 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=30.8
Q ss_pred CHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCC
Q psy8242 17 GPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA 54 (248)
Q Consensus 17 ~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~ 54 (248)
.+.+-++|.+.|++.=.. .||.|+|.+|.+|+.+...
T Consensus 12 ~a~~ra~~~a~G~~~edl-~kP~IgI~ns~se~~Pch~ 48 (552)
T PRK00911 12 RAPHRSMLRATGLTDEDF-DKPFIGIANSWNEITPCNI 48 (552)
T ss_pred hHHHHHHHHHcCCChHHh-cCCEEEEeccccccccchh
Confidence 446779999999987665 7999999999999976554
No 35
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=73.84 E-value=14 Score=31.72 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=43.0
Q ss_pred cCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCC--c
Q psy8242 4 RKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASC--D 81 (248)
Q Consensus 4 ~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~--D 81 (248)
..|.+|.++|++++|.+. ++ | .+.-| -+=.||++.++.+-+... .+ -
T Consensus 101 ~~G~vi~~kGt~vNPLd~----------v~-~--~~~Lv-----------------fiDg~D~~Qv~wa~~~~~-~~~~~ 149 (202)
T TIGR02743 101 EKGQVLAKKGTRINPLDR----------VS-L--SKTLL-----------------FFDADDPEQLAWAQQQLP-SCPNV 149 (202)
T ss_pred CCCCEEECCCCEECCccc----------cc-C--CceEE-----------------EEeCCCHHHHHHHHHhcc-cCCCe
Confidence 579999999999999981 00 1 11111 234678888887765433 33 2
Q ss_pred EEEEcCCCCCCCCchHHHHHHHhcCCceeee
Q psy8242 82 VIISTGSVSMGDKDYLKDILVTDLGASIHFG 112 (248)
Q Consensus 82 vvittGG~s~g~~D~~~~~l~~~~g~~~~f~ 112 (248)
-+|.|+|+ ..++-+ .++..++|.
T Consensus 150 k~IL~~Gs-------~~~l~~-~l~~~vYfd 172 (202)
T TIGR02743 150 KWILTGGS-------VNELEK-RLDSRIYFD 172 (202)
T ss_pred EEEEeCCC-------HHHHHH-HhCCceEEc
Confidence 35666655 344445 677677775
No 36
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=72.76 E-value=0.99 Score=44.13 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=59.5
Q ss_pred ecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCCcEEEEcCCCCCCC---------CchHHHHHH
Q psy8242 35 YKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASCDVIISTGSVSMGD---------KDYLKDILV 102 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~DvvittGG~s~g~---------~D~~~~~l~ 102 (248)
++||.|+|.+|-+|+.+... ++.+=.+.+++.++++= .++..+-++-|.+.|. +|++.+.++
T Consensus 9 ~~kP~IgI~ns~~e~~pch~------hl~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAdsiE 82 (535)
T TIGR00110 9 FGKPFIGVANSYTTIVPGHM------HLRDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIADSVE 82 (535)
T ss_pred hCCCEEEEEeccccCcCchh------hHHHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchhhhhHHHHHHHHH
Confidence 36999999999999986665 44444555556665542 2345555666666665 677777666
Q ss_pred HhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 103 TDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 103 ~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
.... .-.|+++ +.-||--+..++++ .|-+.+||-|..
T Consensus 83 ~~~~-~~~~Dg~v~l~~CDK~~PG~lMaaarln-iP~i~v~gGpm~ 126 (535)
T TIGR00110 83 TMVN-AHRFDGLVCIPSCDKITPGMLMAAARLN-IPSIFVTGGPML 126 (535)
T ss_pred HHHh-cCCcceEEEeccCCCCcHHHHHHHHhcC-CCEEEEeCCCcc
Confidence 2222 2235554 34555555555654 666666666543
No 37
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=69.15 E-value=1.7 Score=42.84 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred cCCceeC-HHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---------CCC
Q psy8242 11 EEGNLIG-PPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---------ASC 80 (248)
Q Consensus 11 ~~G~~l~-p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---------~~~ 80 (248)
.+|.... ..+=++|.+.|+++=..-+||.|+|.+|-+|+.+... .+.+=.+.+++.+.++= .-|
T Consensus 15 ~~g~~~~~~~~ra~l~a~G~~~~d~~~KP~IgI~ns~se~~Pch~------hL~~la~~Vk~gv~~aGG~P~ef~ti~v~ 88 (577)
T PRK13016 15 FGPDDLRSFGHRSRMMQMGYAPEDFDGKPVIAILNTWSDANPCHG------HFRERVEDVKRGVLQAGGFPLELPALSLS 88 (577)
T ss_pred cCCccccchHHHHHHHHcCCCHHHHhcCCEEEEEecccCCcCchh------hHHHHHHHHHHHHHHcCCeeEecccccCc
Confidence 3444444 2566999999998877657999999999999976554 33333344444444431 112
Q ss_pred cEEEEcCCCCCCCCchHHHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 81 DVIISTGSVSMGDKDYLKDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 81 DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
|-+ +.| .|.-.+|++.+.++ ..-..-.|.++ +.-||.-+..++++ .|-+.++|-|..
T Consensus 89 Dgi-~~g-~sl~~RelIAdsiE-~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarln-iPsI~v~GG~m~ 152 (577)
T PRK13016 89 ENF-VKP-TTMLYRNLLAMETE-ELIRSHPVDGAVLMGGCDKTTPGLVMGAISMG-LPMIYLPAGPML 152 (577)
T ss_pred ccc-cCC-cccccHHHHHHHHH-HHHhcCCccceEEeccCCCCcHHHHHHHHhcC-CCEEEEecCCCC
Confidence 332 223 56666777777776 32111224443 34555555555554 666666666643
No 38
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=68.55 E-value=21 Score=30.87 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred cCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCC-CcE
Q psy8242 4 RKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS-CDV 82 (248)
Q Consensus 4 ~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~-~Dv 82 (248)
..|.+|.++|++++|.+.- .-.+.-| -+=.||++.++.+-+..... ..-
T Consensus 99 ~~G~vi~~~G~~vNPLd~v-------------~~~~~Lv-----------------fiDgdD~~Qv~wak~~~~~~~~~k 148 (209)
T PRK13738 99 NEGRVFARQGEVVNPLQYV-------------PFNQTLY-----------------FINGDDPAQVAWMKRQTPPTLESK 148 (209)
T ss_pred CCCCEEEcCCCeECccccc-------------CCCceEE-----------------EEeCCCHHHHHHHHHhhhccCCce
Confidence 5799999999999999811 0111111 23467888887776643322 344
Q ss_pred EEEcCCCCCCCCchHHHHHHHhcCCceeee
Q psy8242 83 IISTGSVSMGDKDYLKDILVTDLGASIHFG 112 (248)
Q Consensus 83 vittGG~s~g~~D~~~~~l~~~~g~~~~f~ 112 (248)
+|.++|+ ..++.+ .++..++|.
T Consensus 149 ~ILv~Gs-------~~~~~~-~l~~~vYfd 170 (209)
T PRK13738 149 IILVQGS-------IPEMSK-ALDSRIYFD 170 (209)
T ss_pred EEEECCC-------HHHHHH-HhCCceEEc
Confidence 5555555 355555 677667764
No 39
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=66.55 E-value=34 Score=31.36 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=54.9
Q ss_pred CCceeCHHHHHHHHhCCCCe--EEeecCCeEEE--EecCC----cccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEE
Q psy8242 12 EGNLIGPPELGLLASVGVTS--ITVYKKPIIHI--LSTGN----ELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVI 83 (248)
Q Consensus 12 ~G~~l~p~~i~~Las~Gi~~--V~V~~~prV~i--istG~----El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvv 83 (248)
.|..-...-..+|...|+.. ++|-..-|+.| ..-.+ ||..+|. .+-..+.+.+.+.+++.+++.|+|
T Consensus 59 lGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp-----~is~~~~~~~l~~~~~~l~~~d~V 133 (310)
T COG1105 59 LGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGP-----EISEAELEQFLEQLKALLESDDIV 133 (310)
T ss_pred cCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCC-----CCCHHHHHHHHHHHHHhcccCCEE
Confidence 44444555677888888876 44444445544 33322 4544443 566778889999999989999999
Q ss_pred EEcCCCCCCC-CchHHHHHH
Q psy8242 84 ISTGSVSMGD-KDYLKDILV 102 (248)
Q Consensus 84 ittGG~s~g~-~D~~~~~l~ 102 (248)
+.+|..=.|- .|+-.+.++
T Consensus 134 vlsGSlP~g~~~d~y~~li~ 153 (310)
T COG1105 134 VLSGSLPPGVPPDAYAELIR 153 (310)
T ss_pred EEeCCCCCCCCHHHHHHHHH
Confidence 9999443222 344455544
No 40
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=64.16 E-value=18 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHHHhcCCc
Q psy8242 65 DPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTDLGAS 108 (248)
Q Consensus 65 d~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~~~~g~~ 108 (248)
|.+.|.++|.+..+ .-|++|.+||.-.|-+.+..+--+ +.|..
T Consensus 16 D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~-~~gv~ 59 (71)
T PF10686_consen 16 DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWAR-ERGVP 59 (71)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHH-HCCCe
Confidence 57888888887765 479999999997777766666555 55543
No 41
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.93 E-value=39 Score=30.45 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEE--EeCCEEEE---EcCCC--hHHHHHH
Q psy8242 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFA--TLGNKLIF---CLPGN--PVSAMVT 145 (248)
Q Consensus 73 l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g--~~~~~~v~---~LPG~--P~aa~~~ 145 (248)
+.+.+.++|+||+|=... =+..+.++ .+...-++-.++..||. +-|- +..+..++ +|||- |.++...
T Consensus 204 l~~~l~~aDiVI~t~p~~----~i~~~~l~-~~~~g~vIIDla~~pgg-td~~~a~~~Gv~~~~~~~lpg~vap~ta~~~ 277 (296)
T PRK08306 204 LAEEVGKIDIIFNTIPAL----VLTKEVLS-KMPPEALIIDLASKPGG-TDFEYAEKRGIKALLAPGLPGKVAPKTAGQI 277 (296)
T ss_pred HHHHhCCCCEEEECCChh----hhhHHHHH-cCCCCcEEEEEccCCCC-cCeeehhhCCeEEEEECCCCccCCHHHHHHH
Confidence 445567899999873222 23455555 55445566779999988 4332 22344444 56642 5666777
Q ss_pred HHHHHHHHHHHhcC
Q psy8242 146 CHLFVLPALKALAG 159 (248)
Q Consensus 146 ~~~~v~P~l~~l~G 159 (248)
+...+..+|..+..
T Consensus 278 ~~~~i~~~l~~~~~ 291 (296)
T PRK08306 278 LANVLSQLLAEDLI 291 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777788766643
No 42
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=61.92 E-value=17 Score=33.59 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=45.8
Q ss_pred HHHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHHH
Q psy8242 68 LLLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVSA 142 (248)
Q Consensus 68 ~i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~aa 142 (248)
-++..|+.+++ -.|+||||||. +..+.++ .+|...+ .+-..--+. ...+-++++..+ |...
T Consensus 61 Glr~~i~~Li~~g~VD~iVTTgan------i~hD~~~-~lg~~~y-~g~f~~dd~~Lr~~ginRIgdv~i------p~e~ 126 (329)
T PRK00805 61 GMRKIIKWLIRNRYVDVLVSTGAN------IFHDIHE-ALGFKHY-KGSHHVDDEELFKEGIDRIYDVFA------YEEE 126 (329)
T ss_pred HHHHHHHHHHHcCCeeEEEeCCCc------hHHHHHH-HcCCCee-ccCCCCCHHHHHHcCCCccccccc------CHHH
Confidence 34455555554 37999999987 4456666 6663221 111000000 112334445443 5688
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy8242 143 MVTCHLFVLPALKALAG 159 (248)
Q Consensus 143 ~~~~~~~v~P~l~~l~G 159 (248)
+.-|+.++.|+++++..
T Consensus 127 y~~~E~~i~~il~~~~~ 143 (329)
T PRK00805 127 FRKADNLIAEFAETLPG 143 (329)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998864
No 43
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=60.69 E-value=2.9 Score=41.31 Aligned_cols=122 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred CCceeC-HHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCCcEEEEcC
Q psy8242 12 EGNLIG-PPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASCDVIISTG 87 (248)
Q Consensus 12 ~G~~l~-p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~DvvittG 87 (248)
+|.-.. ..+=++|.+.|+++-.--.||.|+|.+|.+|+.+... .+.+=.+.+++.++++= .++..+-.+-
T Consensus 12 ~g~~~a~~~~ra~l~a~G~~~ed~~~kP~IgI~ns~se~~Pch~------hl~~l~~~vk~gi~~aGg~p~ef~ti~v~D 85 (571)
T PRK06131 12 GDDDFRAFYHRSFMKNQGYPDELFDGRPIIGICNTWSDLNPCNA------HFRQLAERVKRGVLEAGGFPVEFPVISLGE 85 (571)
T ss_pred CCCccccHHHHHHHHHcCCChHHhccCCEEEEecccccCcCchh------hHHHHHHHHHHHHHHcCCEEEecCccCccc
Confidence 344444 2566999999999888744999999999999986654 33333444555555431 1222222222
Q ss_pred ----CCCCCCCchHHHHHHHhcCCceeeeee-------eeecCCcEEEEEeCCEEEEEcCCChHH
Q psy8242 88 ----SVSMGDKDYLKDILVTDLGASIHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 88 ----G~s~g~~D~~~~~l~~~~g~~~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~a 141 (248)
|.|.-.+|++.+.++.... .-.|+++ +.-||.-+..+++ +.|-+.++|-|+.
T Consensus 86 gi~~g~sL~sRelIAdsiE~~~~-a~~~Dg~v~i~~CDK~~PG~lMaa~rl-niPsi~v~gGpm~ 148 (571)
T PRK06131 86 SFLRPTAMLYRNLAAMDVEEMIR-GYPIDGVVLLGGCDKTTPALLMGAASV-DLPAIVLSGGPML 148 (571)
T ss_pred cccCccccccHHHHHHHHHHHHh-cCCcceEEEEeeCCCCcHHHHHHHHhc-CCCEEEEeCCCcC
Confidence 2455667777777662222 2234444 3445554455555 3666666666653
No 44
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=60.64 E-value=91 Score=30.60 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEcC---CCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEE-------EeCCEEEE
Q psy8242 64 DDPDLLLQCLKSNLASCDVIISTG---SVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFA-------TLGNKLIF 133 (248)
Q Consensus 64 Dd~~~i~~~l~~a~~~~DvvittG---G~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g-------~~~~~~v~ 133 (248)
|..+...+.+.+.++++|+||+|- |.- -++=.+.+.++ .+...-.+-.++..+|..+-+. ..++..++
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~-~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~ 309 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVD-SMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVI 309 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHh-hCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEE
Confidence 334455566777778999999988 521 11225666666 5544445667888888755554 22468888
Q ss_pred EcCCChHH----HHHHHHHHHHHHHHHhc
Q psy8242 134 CLPGNPVS----AMVTCHLFVLPALKALA 158 (248)
Q Consensus 134 ~LPG~P~a----a~~~~~~~v~P~l~~l~ 158 (248)
|.|.-|.. +-..|..-+.|+|..+.
T Consensus 310 gv~nlPs~~p~~AS~l~s~nl~~~l~~l~ 338 (511)
T TIGR00561 310 GYTDLPSRLPTQSSQLYGTNLVNLLKLLC 338 (511)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 87777654 33455556778888775
No 45
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=60.55 E-value=13 Score=33.63 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=57.9
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
+.|+.-|++++...++. |.+.|+....+-.+ .+++++.++ .+. . .+...+.+. +.+++++.+++|+
T Consensus 113 d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~-~~~i~t~~~----~~~-a---~~~~~~~~~----~~~~~~~~~v~Vv 179 (288)
T cd04245 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPK-DAGLVVTDE----PGN-A---QILPESYQK----IKKLRDSDEKLVI 179 (288)
T ss_pred HHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHH-HCceeecCC----ccc-c---ccchhhHHH----HHHHHhCCCEEEE
Confidence 45667788888888776 67899887776544 345555552 111 0 122223343 4444555799999
Q ss_pred cCCCC-----------CCCCchHHHHHHHhcCCc
Q psy8242 86 TGSVS-----------MGDKDYLKDILVTDLGAS 108 (248)
Q Consensus 86 tGG~s-----------~g~~D~~~~~l~~~~g~~ 108 (248)
+|..| -|.-|++...+...++++
T Consensus 180 ~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~ 213 (288)
T cd04245 180 PGFYGYSKNGDIKTFSRGGSDITGAILARGFQAD 213 (288)
T ss_pred eCccccCCCCCEEEcCCCchHHHHHHHHHHcCCC
Confidence 99985 446799999998667764
No 46
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=60.30 E-value=27 Score=34.76 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCeEEee-cCCeEEEEecCCcccCCCC
Q psy8242 19 PELGLLASVGVTSITVY-KKPIIHILSTGNELDEPDA 54 (248)
Q Consensus 19 ~~i~~Las~Gi~~V~V~-~~prV~iistG~El~~~~~ 54 (248)
.+-++|.++|+++=... .||.|+|.+|.+|+.+...
T Consensus 28 ~~ra~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch~ 64 (596)
T PRK13017 28 LYLERYMNYGLTREELQSGKPIIGIAQTGSDLSPCNR 64 (596)
T ss_pred HHHHHHHHcCCChHHhccCCCEEEEEecccCCcCchh
Confidence 67799999999987775 7999999999999987654
No 47
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=59.86 E-value=31 Score=31.93 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=44.0
Q ss_pred HHHHHhcC---CCcEEEEcCCCCCCC---------C---chHHHHHHHhcCCceee-------eee---eeecCCcEEEE
Q psy8242 71 QCLKSNLA---SCDVIISTGSVSMGD---------K---DYLKDILVTDLGASIHF-------GRV---NMKPGKPTTFA 125 (248)
Q Consensus 71 ~~l~~a~~---~~DvvittGG~s~g~---------~---D~~~~~l~~~~g~~~~f-------~~v---~~~PG~p~~~g 125 (248)
+.+.+++. .-+|++.=|++..++ + |.++++-+ ... -++. .+| ...|+....+-
T Consensus 100 e~l~~~i~~~kg~yILvVEG~v~~~~~G~y~~vgg~~~~e~l~~aA~-~A~-aIiAvGtCAs~GgI~AA~pnps~a~~i~ 177 (355)
T COG1740 100 ELLEDAILKYKGKYILVVEGAVPLGENGMYCIVGGEPFKEILRKAAE-GAS-AIIAVGTCASWGGIQAAKPNPTGAGPLS 177 (355)
T ss_pred HHHHHHHHhcCCceEEEEeCCccCCCCceEEEEcChhHHHHHHHHhh-cCc-eEEEEecccccCCeeccCCCCCCcccce
Confidence 44444443 369999999999885 2 33333333 111 1222 233 34566555555
Q ss_pred EeC-CEEEEEcCCChHHHHHHHH
Q psy8242 126 TLG-NKLIFCLPGNPVSAMVTCH 147 (248)
Q Consensus 126 ~~~-~~~v~~LPG~P~aa~~~~~ 147 (248)
.+. ++||+.+||.|..--...-
T Consensus 178 ev~~~kpVINiPGCPp~pd~iv~ 200 (355)
T COG1740 178 EVIKDKPVINIPGCPPNPDWIVA 200 (355)
T ss_pred ecccCCceeeCCCCCCCchhHHH
Confidence 554 7999999999976544333
No 48
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=59.09 E-value=18 Score=33.17 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHH
Q psy8242 67 DLLLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 67 ~~i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~a 141 (248)
.-+++.|+.+++ -.|+||||||. +..+.++ .+|...+ .+-..-.++ ...+-++++..+ |..
T Consensus 71 aGlr~ii~~Li~~~~VD~iVtTgan------iehD~~~-~lg~~~y-~G~~~~dd~~Lr~~ginRIgd~~i------p~e 136 (316)
T PRK02301 71 AGMRGIVSDLIRDGHIDVLVTTGAN------LTHDVIE-AIGGHHH-HGTAHAHDEELRDEGIDRIYDVYL------PQE 136 (316)
T ss_pred HHHHHHHHHHHHcCCeeEEEcCCCc------hHHHHHH-HcCCCee-ccCCCCCHHHHHHcCCCccceeCC------ChH
Confidence 334555555554 37999999987 4556666 6763322 111101111 112334445443 468
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy8242 142 AMVTCHLFVLPALKALAG 159 (248)
Q Consensus 142 a~~~~~~~v~P~l~~l~G 159 (248)
.+..|+.++.|++.++..
T Consensus 137 ~y~~~E~~i~~il~~~~~ 154 (316)
T PRK02301 137 HFADFEEFLQDVFPGLEE 154 (316)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 899999999999998864
No 49
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=55.04 E-value=20 Score=31.73 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=41.9
Q ss_pred ecCCeEEEEecCCcccCCCCCCCCC--ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHHHhcC
Q psy8242 35 YKKPIIHILSTGNELDEPDAHVLKP--GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~~~~~--~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~~~~g 106 (248)
.+.|||+++...=|.-.+.. .... .++.-..+.+++.+++..+ ++|+|++.||++ |+..+.|. +.|
T Consensus 84 i~n~kIlll~~~Le~~~~~~-~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~----~~a~~~l~-k~g 152 (261)
T cd03334 84 IKNPRILLLQGPLEYQRVEN-KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVS----RIAQDLLL-EAG 152 (261)
T ss_pred cCCCcEEEEeeeeccccccC-CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccC----HHHHHHHH-HCC
Confidence 45678888877666544332 1100 2334445556666666543 799999999884 88888888 566
No 50
>PRK10646 ADP-binding protein; Provisional
Probab=54.43 E-value=14 Score=30.33 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCC
Q psy8242 65 DPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGA 107 (248)
Q Consensus 65 d~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~ 107 (248)
+-..+.+.|.+.++..|+|...|-.|.|+-=|++..++ .+|.
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~-~Lg~ 54 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQ-ALGH 54 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHH-HcCC
Confidence 34567788888888899999999999999999999998 8884
No 51
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=53.44 E-value=6.3 Score=38.91 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=38.8
Q ss_pred CHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHh
Q psy8242 17 GPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSN 76 (248)
Q Consensus 17 ~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a 76 (248)
+..+-+++.+.|+++= -+.||-|+|++|.+|+++... ...|=.+.+++.++++
T Consensus 23 ~~~~r~l~~a~G~~~~-~~~kP~IgI~~s~~d~~p~h~------hl~~l~~~vk~~i~~a 75 (575)
T COG0129 23 AAGHRSLLRATGLTDE-DFGKPIIGIANSYNDMVPGHQ------HLKDLAQLVKEGIREA 75 (575)
T ss_pred ccchHHHHHHhCCChH-HcCCCeEEEEeccccCcCchh------hHHHHHHHHHHHHHHc
Confidence 3667789999999987 448999999999999986655 3344445555555544
No 52
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=52.78 E-value=32 Score=31.99 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHH
Q psy8242 67 DLLLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVS 141 (248)
Q Consensus 67 ~~i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~a 141 (248)
.-+++.|..+++ -.|+||||||..+ +.|+ ++ .+|... +.+-..-.++ ...+-++++..+ |..
T Consensus 72 aGlr~~i~~Li~~~~VD~iVTTganl~-eeD~----~k-~~g~~~-y~G~f~~dd~~Lr~~ginRIgdv~i------p~e 138 (347)
T PRK02492 72 AGCMQVYIDLVRNNMVDAIVATGANIV-DQDF----FE-ALGFKH-YQGSPFVDDAVLRDLYIDRIYDTYI------DEE 138 (347)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCCCch-HHHH----HH-HcCCCe-ecCCCCCCHHHHHHcCCCccccccc------ChH
Confidence 334555555554 3799999998631 3343 44 454221 1111111111 012224445443 567
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q psy8242 142 AMVTCHLFVLPALKALAGS 160 (248)
Q Consensus 142 a~~~~~~~v~P~l~~l~G~ 160 (248)
.+..|+.++.|++..+.+.
T Consensus 139 ~y~~~E~~v~~il~~~~~~ 157 (347)
T PRK02492 139 ELQVCDHTIAEIANSLEPR 157 (347)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7899999999999998654
No 53
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=51.48 E-value=15 Score=29.88 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=40.0
Q ss_pred cCCCcEEEEcCCCCCCCCchHHHHHHHhc-CCcee--------eeeeeeecCCcEEEEEeC-CEEE-EEcCCChHHHHHH
Q psy8242 77 LASCDVIISTGSVSMGDKDYLKDILVTDL-GASIH--------FGRVNMKPGKPTTFATLG-NKLI-FCLPGNPVSAMVT 145 (248)
Q Consensus 77 ~~~~DvvittGG~s~g~~D~~~~~l~~~~-g~~~~--------f~~v~~~PG~p~~~g~~~-~~~v-~~LPG~P~aa~~~ 145 (248)
-+++|+++.||.++......++++.+ ++ ..+.+ +.|+-.. .....+-++ -.+| +.+||.|..-...
T Consensus 55 Pr~aDvllVtG~vt~~~~~~l~~~~e-~~p~pk~VIA~GsCA~~GGi~~~--~y~~~~~v~~~ipVDi~IPGCPp~Pe~i 131 (145)
T TIGR01957 55 PRQADVMIVAGTVTKKMAPALRRLYD-QMPEPKWVISMGACANSGGMFHT--SYSVVQGVDRIVPVDVYIPGCPPRPEAL 131 (145)
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHH-hccCCceEEEecceeecCCCccC--CCccccCcccccccceEeCCCCCCHHHH
Confidence 35699999999998776666666665 32 11111 1122100 011111112 2456 8999999988776
Q ss_pred HHHHH
Q psy8242 146 CHLFV 150 (248)
Q Consensus 146 ~~~~v 150 (248)
.+.++
T Consensus 132 ~~~l~ 136 (145)
T TIGR01957 132 IYGLI 136 (145)
T ss_pred HHHHH
Confidence 66554
No 54
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=49.98 E-value=1.4e+02 Score=27.73 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHhcCCCcEEEEcCCC-CC-CCCchHHHHHHHhcCCceeeeeeeeecCCcEE----------EEEeCCEEEEEcCCC--
Q psy8242 73 LKSNLASCDVIISTGSV-SM-GDKDYLKDILVTDLGASIHFGRVNMKPGKPTT----------FATLGNKLIFCLPGN-- 138 (248)
Q Consensus 73 l~~a~~~~DvvittGG~-s~-g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~----------~g~~~~~~v~~LPG~-- 138 (248)
+.+++.++|+||++=+. +. ...=++.+.++ .+...-++-.+++.||...- +...++..+++.|.-
T Consensus 224 l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~-~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~ 302 (370)
T TIGR00518 224 IEDAVKRADLLIGAVLIPGAKAPKLVSNSLVA-QMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPG 302 (370)
T ss_pred HHHHHccCCEEEEccccCCCCCCcCcCHHHHh-cCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCccc
Confidence 34455689999987533 11 22224577776 56555667778888887621 223456666665443
Q ss_pred --hHHHHHHHHHHHHHHHHHhc
Q psy8242 139 --PVSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 139 --P~aa~~~~~~~v~P~l~~l~ 158 (248)
|..+-..|-.-+.|+|..+.
T Consensus 303 ~~p~~aS~~~~~~l~~~l~~~~ 324 (370)
T TIGR00518 303 AVPKTSTYALTNATMPYVLELA 324 (370)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888888876
No 55
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=49.91 E-value=60 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=37.6
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCC----CCCCchHHHHHHHhcCCc
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVS----MGDKDYLKDILVTDLGAS 108 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s----~g~~D~~~~~l~~~~g~~ 108 (248)
..+|.+++|||=-.+ -+.++|-+.....++-|.|.|++ -+...++.++++ +.|..
T Consensus 2 ~~kVLFVC~gN~cRS----------------pmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~-e~Gid 60 (139)
T COG0394 2 MMKVLFVCTGNICRS----------------PMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLA-EHGID 60 (139)
T ss_pred CceEEEEcCCCcccC----------------HHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHH-HcCCC
Confidence 468999999984432 33444444333478999999974 345788999999 77743
No 56
>PRK08211 putative dehydratase; Provisional
Probab=49.85 E-value=6.3 Score=39.42 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHhCCCCeEEeecCCeEEEEecCCcccCCCCCC--CCCccccCCHHHHHHHHHHhcC-------CCcEEEEcCCCCCCC-
Q psy8242 24 LASVGVTSITVYKKPIIHILSTGNELDEPDAHV--LKPGICRDDPDLLLQCLKSNLA-------SCDVIISTGSVSMGD- 93 (248)
Q Consensus 24 Las~Gi~~V~V~~~prV~iistG~El~~~~~~~--~~~~~v~Dd~~~i~~~l~~a~~-------~~DvvittGG~s~g~- 93 (248)
=|+.|++.=.. .||.|+|.+|.+||..+.-.+ ++-..+.-....+.+++++.+. ++..+-.+-|.+.|.
T Consensus 49 ~~a~G~~~~dl-~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~ti~vcDGit~G~~ 127 (655)
T PRK08211 49 NAGMGWDPARL-LGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYVSDPCDGRTQGTT 127 (655)
T ss_pred hccCCCCHHHc-CCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCCCCCcCccccCCc
Confidence 45778877665 799999999999877655311 1111222223444444444332 234444445555544
Q ss_pred --------CchHHHHHHHhcCCc-eeeeee-------eeecCCcEEEEEeCCEEEEEcCCChH
Q psy8242 94 --------KDYLKDILVTDLGAS-IHFGRV-------NMKPGKPTTFATLGNKLIFCLPGNPV 140 (248)
Q Consensus 94 --------~D~~~~~l~~~~g~~-~~f~~v-------~~~PG~p~~~g~~~~~~v~~LPG~P~ 140 (248)
+|++...++ .+... -.|.++ +.-||--+..++.-+.|-+.+||-|.
T Consensus 128 GM~ySL~sRelIA~siE-~~~~a~~~~DGvV~l~~CDK~~PGmLMAaa~~~niPsI~V~GGpm 189 (655)
T PRK08211 128 GMFDSLPYRNDAAIVFR-RLIRSLPTRKAVIGVATCDKGLPAMMMALAGMHDLPTVLVPGGVT 189 (655)
T ss_pred cceechhhHHHHHHHHH-HHHcccCcCCeEEEeCcCCCchHHHHHHHHHcCCCCEEEEeCCCC
Confidence 566666665 33211 235554 24455544445445667777666664
No 57
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=48.20 E-value=84 Score=26.53 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=45.8
Q ss_pred cCCCcEEEEcCCCCCCCCchHHHHHHHhc-CCcee--------eeeeeeecCCcEEEEEeC-CEEE-EEcCCChHHHHHH
Q psy8242 77 LASCDVIISTGSVSMGDKDYLKDILVTDL-GASIH--------FGRVNMKPGKPTTFATLG-NKLI-FCLPGNPVSAMVT 145 (248)
Q Consensus 77 ~~~~DvvittGG~s~g~~D~~~~~l~~~~-g~~~~--------f~~v~~~PG~p~~~g~~~-~~~v-~~LPG~P~aa~~~ 145 (248)
-+++|++|.+|.++.-....+.++.+ .. ..+.+ +.|+. + .+..+.-++ -.|| +.+||.|..-...
T Consensus 73 PR~ADillVeG~VT~~m~~~l~~~~e-~~p~pK~VIAvGaCA~~GGi~--~-~y~~~~gv~~vvpVDv~IPGCPP~Pe~i 148 (181)
T PRK14817 73 PRQADLLMVVGTVNCKQAPILQRVYE-QMADPKWVMAFGVCASSGGFY--D-NYATVQGIDRIIPVDVYVPGCPPRPEQV 148 (181)
T ss_pred CcceeEEEEEecCCccchHHHHHHHH-HcccCCEEEEeccccccCCcC--C-CcccccCccccceeeEEecCCCCCHHHH
Confidence 36799999999997776666666655 32 11221 12322 2 222222222 2467 8999999888776
Q ss_pred HHHHHHHHHHHhcCC
Q psy8242 146 CHLFVLPALKALAGS 160 (248)
Q Consensus 146 ~~~~v~P~l~~l~G~ 160 (248)
.+.++ -+.+++.+.
T Consensus 149 l~~l~-~l~~ki~~~ 162 (181)
T PRK14817 149 LDGIM-LLQKKIQNQ 162 (181)
T ss_pred HHHHH-HHHHHhhcC
Confidence 66654 344555443
No 58
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=47.33 E-value=26 Score=29.61 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhc-CCcee--------eeeeeeecCCcEEEEEe-CCEEE-E
Q psy8242 65 DPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDL-GASIH--------FGRVNMKPGKPTTFATL-GNKLI-F 133 (248)
Q Consensus 65 d~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~-g~~~~--------f~~v~~~PG~p~~~g~~-~~~~v-~ 133 (248)
|.+.+--.....-+++|++|.+|.++......++++.+ ++ ..+.+ +.|+-- .+ .....-+ +-.|| +
T Consensus 60 DieRfGi~~~~sPr~aDvllV~G~vt~~~~~~l~~~~e-~mp~pk~VIA~GaCA~~GGif~-~s-y~~~~gv~~~ipVDv 136 (183)
T PRK06411 60 DLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYD-QMPEPKWVISMGSCANSGGMYH-YS-YSVVQGVDRIVPVDV 136 (183)
T ss_pred cHHHhCccccCCCCceeEEEEEeCCCccchHHHHHHHH-HcCcCCeEEEEecccccCCccc-CC-CccccCcccccccce
Confidence 34444443333335799999999998877776666665 32 11111 112210 00 1111111 12367 8
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHhcC
Q psy8242 134 CLPGNPVSAMVTCHLFVLPALKALAG 159 (248)
Q Consensus 134 ~LPG~P~aa~~~~~~~v~P~l~~l~G 159 (248)
.+||.|..-...++.++ -+++++.+
T Consensus 137 ~IPGCPP~Pe~il~~l~-~l~~~i~~ 161 (183)
T PRK06411 137 YVPGCPPRPEALLYGIL-KLQKKIRQ 161 (183)
T ss_pred EeCCCCCCHHHHHHHHH-HHHHHHhc
Confidence 99999988877666654 44555544
No 59
>PRK09330 cell division protein FtsZ; Validated
Probab=47.14 E-value=27 Score=32.98 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCC----CCCCchHHHHHHHhcCCceeeeeeeeec
Q psy8242 68 LLLQCLKSNLASCDVIISTGSVS----MGDKDYLKDILVTDLGASIHFGRVNMKP 118 (248)
Q Consensus 68 ~i~~~l~~a~~~~DvvittGG~s----~g~~D~~~~~l~~~~g~~~~f~~v~~~P 118 (248)
+..+.|+++++.||+|++|.|+| .|-.-++.++.+ ++| ++.-.|-.+|
T Consensus 86 e~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iak-e~g--~ltvaVvt~P 137 (384)
T PRK09330 86 ESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAK-ELG--ILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHH-HcC--CcEEEEEecC
Confidence 34455666678899999885544 444556666666 666 3444555555
No 60
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=46.70 E-value=37 Score=31.86 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcC---CCcEEEEcCCCCCCCC--------chHHHHHHHhc--CCc-ee-------eeeeeeecCCcEE--
Q psy8242 67 DLLLQCLKSNLA---SCDVIISTGSVSMGDK--------DYLKDILVTDL--GAS-IH-------FGRVNMKPGKPTT-- 123 (248)
Q Consensus 67 ~~i~~~l~~a~~---~~DvvittGG~s~g~~--------D~~~~~l~~~~--g~~-~~-------f~~v~~~PG~p~~-- 123 (248)
+...+.++++++ ..||+|..|.+...+. .-..+.+. ++ .+. ++ |-+|.--.+.|+.
T Consensus 96 ~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~~G~y~~~gg~~~~e~l~-~~a~~A~aVVAvGtCAs~GGI~aa~pnptga~ 174 (371)
T PRK10468 96 HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIR-KAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAV 174 (371)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcceeeECCchHHHHHH-HHhccCCEEEEEecccccCCcccCCCCCCCCc
Confidence 345555666554 4799999999966531 11233333 11 112 11 2344433334542
Q ss_pred --EEEeCCEEEEEcCCChHHHHHHHHHHH
Q psy8242 124 --FATLGNKLIFCLPGNPVSAMVTCHLFV 150 (248)
Q Consensus 124 --~g~~~~~~v~~LPG~P~aa~~~~~~~v 150 (248)
-+.+.++||+.+||-|..--.....++
T Consensus 175 gv~~~l~~~PVINIPGCPp~P~~i~~tL~ 203 (371)
T PRK10468 175 SLQEVLPGKTVINIPGCPPNPHNFLATVA 203 (371)
T ss_pred cHHHhcCCCCeEEcCCCCCCHHHHHHHHH
Confidence 123457899999999987655544443
No 61
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=45.60 E-value=6.1 Score=39.46 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=61.1
Q ss_pred HhCCCCeEEeecCCeEEEEecCCcccCCCCC--CCCCccccCCHHHHHHHHHHhcC-------CCcEEEEcCCCCCCC--
Q psy8242 25 ASVGVTSITVYKKPIIHILSTGNELDEPDAH--VLKPGICRDDPDLLLQCLKSNLA-------SCDVIISTGSVSMGD-- 93 (248)
Q Consensus 25 as~Gi~~V~V~~~prV~iistG~El~~~~~~--~~~~~~v~Dd~~~i~~~l~~a~~-------~~DvvittGG~s~g~-- 93 (248)
++.|++.=.. .||.|+|.+|-+||..+.-. .++-..+.-....+.+++++.+. +...+-.+-|.+.|.
T Consensus 44 ~a~G~~d~dl-~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~ti~vcDGia~G~~G 122 (640)
T TIGR03432 44 AGMGWDPARL-LGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFVSDPCDGRTQGTTG 122 (640)
T ss_pred ccCCCCHHHh-CCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCCCCccCccccCCCc
Confidence 5677766555 79999999999988766641 11111233334444444444432 234444455555553
Q ss_pred -------CchHHHHHHHhcC-Cceeeeeee-------eecCCcEEEEEeCCEEEEEcCCChH
Q psy8242 94 -------KDYLKDILVTDLG-ASIHFGRVN-------MKPGKPTTFATLGNKLIFCLPGNPV 140 (248)
Q Consensus 94 -------~D~~~~~l~~~~g-~~~~f~~v~-------~~PG~p~~~g~~~~~~v~~LPG~P~ 140 (248)
+|++...++ .+- ....|.++- .-||.-+..++.-+.|-+.+||-|+
T Consensus 123 M~ySL~sRelIA~siE-~~v~ah~~~DgvV~i~~CDK~~PgmlMAaa~rlniPsI~V~GGpm 183 (640)
T TIGR03432 123 MFDSLPYRNDAAMVMR-RLIRSLPTRKGVIGIATCDKGLPAMMMALAATHHLPTVLVPGGVT 183 (640)
T ss_pred ceechhhHHHHHHHHH-HHHhccCcCCeEEEeCcCCCchHHHHHHHHHhCCCCEEEEeCCCc
Confidence 566666665 332 122255553 3455444444333566666666553
No 62
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=44.86 E-value=20 Score=31.34 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=39.4
Q ss_pred cCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHh-cCCCcEEEEcCCCCCCCCchHHHHHHHhcC
Q psy8242 36 KKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSN-LASCDVIISTGSVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a-~~~~DvvittGG~s~g~~D~~~~~l~~~~g 106 (248)
+..||+||+.|+-..+..+ .+...+.. +++.+.+++- ..++|++|.|= |+++.+ . .+|
T Consensus 71 k~vrV~Vfa~g~~~~~A~~--AGad~Vg~--edl~e~ik~~r~~~fD~~IAtp-------dmM~~v-~-~LG 129 (228)
T COG0081 71 KTVRVAVFADGEKAEEAKA--AGADYVGG--EDLIELIKNGRAKDFDVFIATP-------DMMPLV-G-KLG 129 (228)
T ss_pred CccEEEEEcChHhHHHHHH--cCCCEecH--HHHHHHHhCcchhcCCEEEECc-------hHHHHH-H-HHh
Confidence 4579999998875543332 11134444 6667777766 67899999975 888888 5 565
No 63
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=44.76 E-value=25 Score=28.01 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCC
Q psy8242 65 DPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGA 107 (248)
Q Consensus 65 d~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~ 107 (248)
+.+.+.+.|.+.+..-++|+.+|-.|.|+.=+++...+ .+|.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~-~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQ-GLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHH-HcCC
Confidence 34567777777777889999999999999999998888 7774
No 64
>KOG3445|consensus
Probab=44.63 E-value=20 Score=28.85 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=35.6
Q ss_pred cCCCCCCCCchHHHHHHHhcCC---ceeeeeeeeecC-CcEEEEEeC--CEEEEEc
Q psy8242 86 TGSVSMGDKDYLKDILVTDLGA---SIHFGRVNMKPG-KPTTFATLG--NKLIFCL 135 (248)
Q Consensus 86 tGG~s~g~~D~~~~~l~~~~g~---~~~f~~v~~~PG-~p~~~g~~~--~~~v~~L 135 (248)
-||+|.|-++|+..-|. .++- .+.|+ |.-++| .|.+-|.+. ...++|.
T Consensus 33 wggSSrGmR~Fle~~L~-~~a~enP~v~i~-v~~rrg~hP~lraeY~NGre~vicv 86 (145)
T KOG3445|consen 33 WGGSSRGMREFLESELP-DLARENPGVVIY-VEPRRGQHPLLRAEYLNGRERVICV 86 (145)
T ss_pred CCCccHHHHHHHHHHHH-HHHhhCCCeEEE-EeccCCCCceEEEEecCCceEEEee
Confidence 49999999999988776 5542 35554 777888 799999764 4567764
No 65
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=44.34 E-value=38 Score=30.70 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCcEEEEc----CCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 67 DLLLQCLKSNLASCDVIIST----GSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 67 ~~i~~~l~~a~~~~Dvvitt----GG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
++..+.|++++++||.++.+ ||+|-|--=++.+.++ +.+. +...|-..|-.
T Consensus 72 ~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~k-e~~~--~~~~vvt~Pf~ 126 (303)
T cd02191 72 EEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLK-RIGT--LTVAVVTLPFS 126 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHH-HhCC--CEEEEEeCCcc
Confidence 44566777778889999876 6676666667777777 5552 34446556643
No 66
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=44.04 E-value=37 Score=31.62 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=36.5
Q ss_pred ecCCeEEEEecCCcccCCCCC-------CCCC------------------------------ccccCCHHHHHHHHHHhc
Q psy8242 35 YKKPIIHILSTGNELDEPDAH-------VLKP------------------------------GICRDDPDLLLQCLKSNL 77 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~-------~~~~------------------------------~~v~Dd~~~i~~~l~~a~ 77 (248)
-+.|+|.|++||--|...... .... ..-+++-..|.+.+++.+
T Consensus 17 ~~l~~I~Il~TGGTIa~~~~~~t~~~~~~~~~~~i~~~~~~v~~~~~~~~i~~~~~~ni~S~~m~~~~w~~la~~I~~~~ 96 (351)
T COG0252 17 SKLPKILILATGGTIASGTDSSTGAVTPTSGALEILALLPAVPALNIAANIEGEQVLNIDSSDMTPEDWLRLAEAINEAL 96 (351)
T ss_pred ccCCeEEEEecCCeeeccccCCCCccccccchHHHHHHhhhccccccccceeeEEeccCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999988763320 0000 345677888999999998
Q ss_pred CCC--cEEEEcCCC
Q psy8242 78 ASC--DVIISTGSV 89 (248)
Q Consensus 78 ~~~--DvvittGG~ 89 (248)
++. |=||+|=|+
T Consensus 97 ~~~~~dGvVItHGT 110 (351)
T COG0252 97 DDGDVDGVVITHGT 110 (351)
T ss_pred ccCCCCeEEEeCCC
Confidence 765 555555444
No 67
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=43.78 E-value=49 Score=28.94 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhc-CCCcEEEEcCCCC---CCCCchHHHH
Q psy8242 64 DDPDLLLQCLKSNL-ASCDVIISTGSVS---MGDKDYLKDI 100 (248)
Q Consensus 64 Dd~~~i~~~l~~a~-~~~DvvittGG~s---~g~~D~~~~~ 100 (248)
.+.+.+++.+..+. .++|++|++|... .++...+.+.
T Consensus 14 g~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~ 54 (226)
T COG2129 14 GSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEEL 54 (226)
T ss_pred cchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhh
Confidence 34455555555443 2799999999887 4455444443
No 68
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=43.62 E-value=58 Score=30.20 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCcEEEEc----CCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 67 DLLLQCLKSNLASCDVIIST----GSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 67 ~~i~~~l~~a~~~~Dvvitt----GG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
++-.+.+.++++.+|++..| ||+|.|..-.+.++++ ++| .+.-.|..+|.+
T Consensus 83 ee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiak-e~g--~ltvavvt~Pf~ 137 (338)
T COG0206 83 EESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAK-ELG--ALTVAVVTLPFS 137 (338)
T ss_pred HHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHH-hcC--CcEEEEEEecch
Confidence 34455666777889955544 6888888899999998 666 456677788866
No 69
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=42.63 E-value=60 Score=29.32 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=56.6
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCC-CcEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS-CDVII 84 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~-~Dvvi 84 (248)
+.|+.-|++++...++. |.+.|+.-..+-.+- .|++.++. +. .. .| .....+.+++.++. .++.|
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~--~i~t~~~~----~~-----a~-~~-~~~~~~~l~~~~~~~~~v~V 184 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARE--LIVTDGGY----LN-----AV-VD-IELSKERIKAWFSSNGKVIV 184 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHH--eeEecCCC----Cc-----eE-ec-hHhhHHHHHHHHhcCCCEEE
Confidence 56788899999998887 778999887775443 35554431 11 01 11 12234455554444 78999
Q ss_pred EcCCCCCCC-----------CchHHHHHHHhcCCc
Q psy8242 85 STGSVSMGD-----------KDYLKDILVTDLGAS 108 (248)
Q Consensus 85 ttGG~s~g~-----------~D~~~~~l~~~~g~~ 108 (248)
++|-.+... -|++...+...++++
T Consensus 185 v~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~ 219 (294)
T cd04257 185 VTGFIASNPQGETTTLGRNGSDYSAAILAALLDAD 219 (294)
T ss_pred ecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCC
Confidence 999876432 288888887666665
No 70
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=42.25 E-value=64 Score=29.12 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=57.0
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCC-CcEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS-CDVII 84 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~-~Dvvi 84 (248)
+.|+.-|++++...++. |.+.|+.-..+-.+ -.|++.++.. . ..-+.+...+.++...+. .+++|
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~--~~i~t~~~~~----~-------~~~~~~~s~~~~~~~~~~~~~v~V 183 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDAR--ELLLTDDGFL----N-------AVVDLKLSKERLAQLLAEHGKVVV 183 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHH--HeEEecCCCC----c-------chhhhHHHHHHHHHHHhcCCCEEE
Confidence 56788899999988876 77899988877443 3355544321 1 111122224455555544 78999
Q ss_pred EcCCCCC-----------CCCchHHHHHHHhcCCc
Q psy8242 85 STGSVSM-----------GDKDYLKDILVTDLGAS 108 (248)
Q Consensus 85 ttGG~s~-----------g~~D~~~~~l~~~~g~~ 108 (248)
++|-.+. |.-|++...+...++++
T Consensus 184 v~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~ 218 (293)
T cd04243 184 TQGFIASNEDGETTTLGRGGSDYSAALLAALLDAE 218 (293)
T ss_pred ecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCC
Confidence 9998753 23488888888667765
No 71
>PLN02551 aspartokinase
Probab=41.91 E-value=50 Score=32.42 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc-CCCcEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL-ASCDVII 84 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~-~~~Dvvi 84 (248)
+.|+.-|++++...++. |.+.|+.-..+-.+ .++|+++++ .+. ..+.....+.+++.+...+ ++.+++|
T Consensus 166 d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~-~~gi~t~~~----~~~----a~i~~~~~~~l~~~l~~~~~~~~~v~V 236 (521)
T PLN02551 166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAF-DIGFITTDD----FTN----ADILEATYPAVAKRLHGDWIDDPAVPV 236 (521)
T ss_pred HHHHhHHHHHHHHHHHHHHHHCCCCcEEechH-HcceEecCC----CCc----cchhhhhHHHHHHHHHhhhccCCeEEE
Confidence 56788899999988876 66899988777544 677888763 221 0233444566666665444 3458999
Q ss_pred EcCCCCCC-C-----------CchHHHHHHHhcCCc-eeee
Q psy8242 85 STGSVSMG-D-----------KDYLKDILVTDLGAS-IHFG 112 (248)
Q Consensus 85 ttGG~s~g-~-----------~D~~~~~l~~~~g~~-~~f~ 112 (248)
++|=.+.+ . -||+..++...++++ +.+|
T Consensus 237 v~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~ 277 (521)
T PLN02551 237 VTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVW 277 (521)
T ss_pred EcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEE
Confidence 99987765 2 399999998667764 4443
No 72
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=41.27 E-value=39 Score=31.52 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhcCCCc-----EEE--EcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 63 RDDPDLLLQCLKSNLASCD-----VII--STGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~~D-----vvi--ttGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
+.-.+.+.+.|++.+++|| +|+ ..||+|-|---++-+.++++++ +.....+.+-|-.
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~-~~~i~~~~v~P~~ 132 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP-KILINTFSIFPSP 132 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC-ccceEeEEEeccC
Confidence 4667888889999999999 444 2566777777777787875554 4555666666653
No 73
>KOG0025|consensus
Probab=40.59 E-value=69 Score=29.43 Aligned_cols=57 Identities=25% Similarity=0.470 Sum_probs=43.8
Q ss_pred CccCCCEEecCCc--eeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCC
Q psy8242 2 DIRKGATILEEGN--LIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS 79 (248)
Q Consensus 2 D~~~G~~ll~~G~--~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~ 79 (248)
|+++||-+++-|. -+.-.-|=+..+.||.+|.|.|. +||.+++++.|+.. .
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRd-------------------------R~~ieel~~~Lk~l--G 209 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRD-------------------------RPNIEELKKQLKSL--G 209 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeec-------------------------CccHHHHHHHHHHc--C
Confidence 5678888887654 45566677888999999988664 45678999999873 7
Q ss_pred CcEEEE
Q psy8242 80 CDVIIS 85 (248)
Q Consensus 80 ~Dvvit 85 (248)
||-|||
T Consensus 210 A~~ViT 215 (354)
T KOG0025|consen 210 ATEVIT 215 (354)
T ss_pred CceEec
Confidence 888887
No 74
>PRK10997 yieM hypothetical protein; Provisional
Probab=39.92 E-value=49 Score=32.26 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC------------ccccCCHHHHHHHHHHhcC----CCcE
Q psy8242 19 PELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP------------GICRDDPDLLLQCLKSNLA----SCDV 82 (248)
Q Consensus 19 ~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~------------~~v~Dd~~~i~~~l~~a~~----~~Dv 82 (248)
.+.+...++.+..+.....-+++++.-++++....-.+... +--.|-...++.+++.+-+ ++|+
T Consensus 341 e~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~f~GGTDl~~aL~~al~~l~~~~~r~adI 420 (487)
T PRK10997 341 EQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQSFRGGTDLAPCLRAIIEKMQGREWFDADA 420 (487)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcccccCCceE
Confidence 34433333333344344455677777777666421101100 1112333444445544433 4899
Q ss_pred EEEcCCCCCCCCchHHHHHHHhcC--Cceeeeeeeeec-CCcEEEEEeCCEEEE
Q psy8242 83 IISTGSVSMGDKDYLKDILVTDLG--ASIHFGRVNMKP-GKPTTFATLGNKLIF 133 (248)
Q Consensus 83 vittGG~s~g~~D~~~~~l~~~~g--~~~~f~~v~~~P-G~p~~~g~~~~~~v~ 133 (248)
||+|-+...+..|-+.+.+. .+. ....||.|.+.- |+|...-.++....|
T Consensus 421 VVISDF~~~~~~eel~~~L~-~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~~W~~ 473 (487)
T PRK10997 421 VVISDFIAQRLPDELVAKVK-ELQRQHQHRFHAVAMSAHGKPGIMRIFDHIWRF 473 (487)
T ss_pred EEECCCCCCCChHHHHHHHH-HHHHhcCcEEEEEEeCCCCCchHHHhcCeeeEe
Confidence 99999987664443444443 221 256899999964 787776666665554
No 75
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=39.68 E-value=41 Score=28.50 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCCCCCchHHHHHHHhcC-Ccee--------eeeeeeecCCcEEEEEeCCEEE-EEcCCChHHHHHHHH
Q psy8242 78 ASCDVIISTGSVSMGDKDYLKDILVTDLG-ASIH--------FGRVNMKPGKPTTFATLGNKLI-FCLPGNPVSAMVTCH 147 (248)
Q Consensus 78 ~~~DvvittGG~s~g~~D~~~~~l~~~~g-~~~~--------f~~v~~~PG~p~~~g~~~~~~v-~~LPG~P~aa~~~~~ 147 (248)
+++|+++.||-++.-....+.++.+ +.- .+.+ +.|+.-..+.. -+.-+-.|| +.+||.|..-....+
T Consensus 72 R~ADvllVtG~VT~~m~~~l~~~ye-qmp~pk~VIAvGsCA~~GGi~~~y~~~--~gv~~vvpVDv~IPGCPP~Pe~il~ 148 (186)
T PRK14814 72 RQADMILVLGTITYKMAPVLRQIYD-QMAEPKFVISVGACASSGGMFHTYGVL--QGVDRILPVDVYVPGCPPRPEAILD 148 (186)
T ss_pred ccceEEEEeccCchhhHHHHHHHHH-hcCCCCeEEEeccccccCCccCcCCCC--cCccccccccEEecCCCCCHHHHHH
Confidence 5799999999888776666666666 421 1111 11222111111 111122567 889999998877666
Q ss_pred HHHHHHHHHh
Q psy8242 148 LFVLPALKAL 157 (248)
Q Consensus 148 ~~v~P~l~~l 157 (248)
.++ -+..++
T Consensus 149 ~l~-~L~~~i 157 (186)
T PRK14814 149 ALV-KLQTKL 157 (186)
T ss_pred HHH-HHHHHH
Confidence 554 333444
No 76
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=39.50 E-value=36 Score=30.32 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=40.3
Q ss_pred cCCCcEEEEcCCCCCCCCchHHHHHHHhcC-Cceee--------eeeeeecCCcEEEEEeC-CEEE-EEcCCChHHHHHH
Q psy8242 77 LASCDVIISTGSVSMGDKDYLKDILVTDLG-ASIHF--------GRVNMKPGKPTTFATLG-NKLI-FCLPGNPVSAMVT 145 (248)
Q Consensus 77 ~~~~DvvittGG~s~g~~D~~~~~l~~~~g-~~~~f--------~~v~~~PG~p~~~g~~~-~~~v-~~LPG~P~aa~~~ 145 (248)
-+++|+++.||.++.-....+.++.+ +.- .+++. .++ .+-+-.. +.-++ -.+| +.+||.|..-...
T Consensus 69 PRhADIlLVtG~VT~km~~~L~rlye-qmP~PK~VIAvGaCA~~GGI-f~~sY~v-~~gId~vIPVDv~IPGCPP~Pe~I 145 (264)
T PRK14819 69 PRQADLMIVAGTVTKKMAPQVVRLYN-QMPEPRYVISMGACATSGGP-FRDGYNV-LRGIDLLIPVDVYIPGCPPRPEAL 145 (264)
T ss_pred CCcceEEEEecCCchhhHHHHHHHHH-hccCCCeEEEEccccccCCc-cccCCCc-cCCccccccccEEecCCCCCHHHH
Confidence 35799999999998777777777777 421 12111 111 0111111 11111 2466 8899998877666
Q ss_pred HHHHH
Q psy8242 146 CHLFV 150 (248)
Q Consensus 146 ~~~~v 150 (248)
++.++
T Consensus 146 l~gLl 150 (264)
T PRK14819 146 LHALM 150 (264)
T ss_pred HHHHH
Confidence 65554
No 77
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=39.26 E-value=79 Score=25.16 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEcC--CCCCC-CCc-hHHHHHHHhcCCc
Q psy8242 63 RDDPDLLLQCLKSNLASCDVIISTG--SVSMG-DKD-YLKDILVTDLGAS 108 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~~DvvittG--G~s~g-~~D-~~~~~l~~~~g~~ 108 (248)
+.+.+.+.+.++++.+++|+||.=| |.+.+ ..+ ...+.++ .++..
T Consensus 83 ~~~~~~i~~~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~-~~~~~ 131 (166)
T TIGR00347 83 PIDLEELSKHLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIK-LLQLP 131 (166)
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHH-HhCCC
Confidence 3455678888887767899999544 43322 233 4566666 66644
No 78
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=39.14 E-value=28 Score=28.59 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHhcCC--------CcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeee
Q psy8242 62 CRDDPDLLLQCLKSNLAS--------CDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRV 114 (248)
Q Consensus 62 v~Dd~~~i~~~l~~a~~~--------~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v 114 (248)
-+||.+.+++.|.+-.+. -|++++=||- |.--.+.++|+ ++|.++-+-++
T Consensus 54 ~~dDy~~M~Evl~RR~~~~~~~~~~lPDLilIDGG~--gQl~aa~~~l~-~lgl~i~vigl 111 (155)
T PF08459_consen 54 GGDDYAAMREVLTRRFKRLKEEKEPLPDLILIDGGK--GQLNAAKEVLK-ELGLNIPVIGL 111 (155)
T ss_dssp TT-HHHHHHHHHHHHHCCCHHHT----SEEEESSSH--HHHHHHHHHHH-CTT----EEEE
T ss_pred CCcHHHHHHHHHHHHHhcccccCCCCCCEEEEcCCH--HHHHHHHHHHH-HcCCCeEEEEE
Confidence 369999999999887643 4999999987 45556677787 77765444333
No 79
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=38.42 E-value=41 Score=28.44 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=40.6
Q ss_pred cCCCcEEEEcCCCCCCCCchHHHHHHHhc-CCceee--eeeeeecC----CcEEEEEe-CCEEE-EEcCCChHHHHHHHH
Q psy8242 77 LASCDVIISTGSVSMGDKDYLKDILVTDL-GASIHF--GRVNMKPG----KPTTFATL-GNKLI-FCLPGNPVSAMVTCH 147 (248)
Q Consensus 77 ~~~~DvvittGG~s~g~~D~~~~~l~~~~-g~~~~f--~~v~~~PG----~p~~~g~~-~~~~v-~~LPG~P~aa~~~~~ 147 (248)
-+++|++|+||.++.-....+.++.+ .. ..+.++ ..=+..=| .+..++-+ +-.|| +.+||.|..-...++
T Consensus 79 PRhADvllVtG~VT~~m~~~l~~~~e-~~p~pK~VIAvGsCA~~GGif~~sy~~~~gvd~vIpVDv~IPGCPP~Pe~Il~ 157 (182)
T PRK14816 79 PRQADMIMVCGTITNKMAPVLKRLYD-QMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYY 157 (182)
T ss_pred CCcceEEEEecCCcchhHHHHHHHHH-hcCCCCEEEEeccccccCCccccCCccCCCccccccccEEeeCcCCCHHHHHH
Confidence 36799999999998777777777776 32 112211 00011000 01111111 12456 889999998877666
Q ss_pred HHH
Q psy8242 148 LFV 150 (248)
Q Consensus 148 ~~v 150 (248)
.++
T Consensus 158 ~l~ 160 (182)
T PRK14816 158 GMM 160 (182)
T ss_pred HHH
Confidence 654
No 80
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=37.87 E-value=18 Score=31.88 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=12.8
Q ss_pred HHhcCCCcEEEEcCCC
Q psy8242 74 KSNLASCDVIISTGSV 89 (248)
Q Consensus 74 ~~a~~~~DvvittGG~ 89 (248)
.+.+.++|.|..+||-
T Consensus 77 ~~~l~~ad~I~~~GGn 92 (250)
T TIGR02069 77 IALLSNATGIFFTGGD 92 (250)
T ss_pred HHHHhhCCEEEEeCCC
Confidence 3456789999999976
No 81
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.58 E-value=42 Score=30.13 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=35.9
Q ss_pred HHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCc-EEEEEeCCEEEEEcCCCh
Q psy8242 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKP-TTFATLGNKLIFCLPGNP 139 (248)
Q Consensus 73 l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p-~~~g~~~~~~v~~LPG~P 139 (248)
+.+.++++|+|+.|=...+ +..+.++ .+....++-.++.+||.. +-.++-.+...+..||-|
T Consensus 203 l~~~l~~aDiVint~P~~i----i~~~~l~-~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glP 265 (287)
T TIGR02853 203 LEEKVAEIDIVINTIPALV----LTADVLS-KLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLP 265 (287)
T ss_pred HHHHhccCCEEEECCChHH----hCHHHHh-cCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCC
Confidence 4455678999998643322 1245565 565566788899999873 333333344444334433
No 82
>PRK06291 aspartate kinase; Provisional
Probab=37.33 E-value=62 Score=31.06 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=62.8
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
|.|+.-|++++...++. |.+.|+.-+.+-.+ ..++++.++ .+. ..+...+...+.+.++..++...+.|+
T Consensus 123 d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~-~~~i~t~~~----~~~----~~~~~~~~~~~~~~~~~ll~~~~vpVv 193 (465)
T PRK06291 123 DYILSFGERLSAPILSGALRDLGIKSVALTGG-EAGIITDSN----FGN----ARPLPKTYERVKERLEPLLKEGVIPVV 193 (465)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCeEEEchH-HCcEEecCC----CCc----eeechhhHHHHHHHHHHHhhcCcEEEE
Confidence 45778899999887765 67899988777544 345555442 111 022233455666777777777788898
Q ss_pred cCC-----------CCCCCCchHHHHHHHhcCCc-eeee
Q psy8242 86 TGS-----------VSMGDKDYLKDILVTDLGAS-IHFG 112 (248)
Q Consensus 86 tGG-----------~s~g~~D~~~~~l~~~~g~~-~~f~ 112 (248)
+|- .+-|.-|++...+...++++ +.++
T Consensus 194 ~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~ 232 (465)
T PRK06291 194 TGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIW 232 (465)
T ss_pred eCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEE
Confidence 883 23345699999888667764 4433
No 83
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=37.03 E-value=46 Score=27.20 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCC
Q psy8242 66 PDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGA 107 (248)
Q Consensus 66 ~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~ 107 (248)
...+.+.|.+++...|+|+.+|=.|.|+-=|++-.++ .+|.
T Consensus 11 t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~-~Lg~ 51 (149)
T COG0802 11 TLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAK-GLGV 51 (149)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHH-HcCC
Confidence 4567778888888899999999999999999999988 8873
No 84
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=36.46 E-value=36 Score=26.72 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCc
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGAS 108 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~ 108 (248)
..+.+.|.+.++.-|+|+..|-.|.|+-=|++..++ .+|.+
T Consensus 2 ~~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~-~lg~~ 42 (123)
T PF02367_consen 2 IRLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLAR-ALGID 42 (123)
T ss_dssp HHHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHH-HTT--
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH-HcCCC
Confidence 356677888888899999999999999999998888 88743
No 85
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=35.98 E-value=2.6e+02 Score=27.48 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCC--CCchHHHHHHHhcCCceeeeeeeeecCCc--EEE----EE-eCCEEEEEcCC
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMG--DKDYLKDILVTDLGASIHFGRVNMKPGKP--TTF----AT-LGNKLIFCLPG 137 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g--~~D~~~~~l~~~~g~~~~f~~v~~~PG~p--~~~----g~-~~~~~v~~LPG 137 (248)
+..++.+.+.++++|++|+|-|.... +.-++.+.++ .+...-.+-.+++-+|.. +.+ -. .++.-++|.+.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~-~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n 314 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVA-SMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD 314 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHH-hcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCC
Confidence 44445555556789999999997432 3344588887 554333334455544442 221 11 25778888666
Q ss_pred ChH
Q psy8242 138 NPV 140 (248)
Q Consensus 138 ~P~ 140 (248)
.|.
T Consensus 315 ~P~ 317 (509)
T PRK09424 315 LPS 317 (509)
T ss_pred Cch
Confidence 664
No 86
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=35.80 E-value=90 Score=28.19 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=61.3
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
+.|+.-|++++...++. |.+.|+.-+.+-.+ ...+++.++ .... .+...+...+.+.+.+.++..++.|+
T Consensus 119 d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~-~~~i~t~~~-~~~a-------~~~~~~~~~i~~~l~~ll~~~~vpVv 189 (298)
T cd04244 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGG-EAGIITDDN-FGNA-------RPLPATYERVRKRLLPMLEDGKIPVV 189 (298)
T ss_pred hHhccHhHHHHHHHHHHHHHhCCCCeEEEcHH-HcceeecCc-cccc-------ccchhHHHHHHHHHHHHhhcCCEEEE
Confidence 56788899999987775 67899887777433 233444332 1110 11123456666677666667789999
Q ss_pred cC--CCC---------CCCCchHHHHHHHhcCCc-eeee
Q psy8242 86 TG--SVS---------MGDKDYLKDILVTDLGAS-IHFG 112 (248)
Q Consensus 86 tG--G~s---------~g~~D~~~~~l~~~~g~~-~~f~ 112 (248)
+| |.. -|.-|++...+...++++ +.++
T Consensus 190 ~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~ 228 (298)
T cd04244 190 TGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIW 228 (298)
T ss_pred eCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEE
Confidence 88 432 235599999988667764 4444
No 87
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=35.56 E-value=79 Score=26.68 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCCCCchHHHHHHHhc-CCcee--------eeeeeeecCCcEEEEEeCCEEE-EEcCCChHHHHHHHH
Q psy8242 78 ASCDVIISTGSVSMGDKDYLKDILVTDL-GASIH--------FGRVNMKPGKPTTFATLGNKLI-FCLPGNPVSAMVTCH 147 (248)
Q Consensus 78 ~~~DvvittGG~s~g~~D~~~~~l~~~~-g~~~~--------f~~v~~~PG~p~~~g~~~~~~v-~~LPG~P~aa~~~~~ 147 (248)
+++|+++++|-++......+.++-+ +. ..+.+ +.|+. ...+..-+..+-.|| +.+||.|..-...++
T Consensus 72 R~aDillVeG~VT~~m~~~l~~~~e-~~p~pk~VIAvGaCA~~GGi~--~~y~~~~~v~~~ipVDv~IPGCPP~Pe~il~ 148 (180)
T PRK14820 72 RQADMLMVMGTIAKKMAPVLKQVYL-QMAEPRWVVAVGACASSGGIF--DTYSVLQGIDRIIPVDVYVPGCPPRPEQIID 148 (180)
T ss_pred ccceEEEEEecCCcccHHHHHHHHH-hcCCCCeEEEEecccccCCcc--ccccccccccccccccEEecCCCCCHHHHHH
Confidence 5789999999887666555444443 21 11111 11221 011111122233567 889999988877666
Q ss_pred HHH
Q psy8242 148 LFV 150 (248)
Q Consensus 148 ~~v 150 (248)
.++
T Consensus 149 ~l~ 151 (180)
T PRK14820 149 GVM 151 (180)
T ss_pred HHH
Confidence 554
No 88
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=35.48 E-value=77 Score=23.35 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCC--CcEEEEcCCCCCCCCchHHHHHHHhc
Q psy8242 67 DLLLQCLKSNLAS--CDVIISTGSVSMGDKDYLKDILVTDL 105 (248)
Q Consensus 67 ~~i~~~l~~a~~~--~DvvittGG~s~g~~D~~~~~l~~~~ 105 (248)
+.+.+.+...+.. .-.++.+|..|.|+.-++..+.. .+
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~-~~ 43 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIAN-EL 43 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH-Hh
Confidence 3445555555543 67899999999999988888877 44
No 89
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.21 E-value=1.2e+02 Score=26.34 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHhc-CCCcEEEEcCCCCCCC--CchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEcCCCh
Q psy8242 63 RDDPDLLLQCLKSNL-ASCDVIISTGSVSMGD--KDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNP 139 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~-~~~DvvittGG~s~g~--~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~LPG~P 139 (248)
.+|.+.+++.++.+- +++|+||.+|=..-.. .+-..+.++ .+. + + +.|++.+|||-
T Consensus 14 Hgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~-~l~-~------------------l-~~pv~~V~GNh 72 (224)
T cd07388 14 KGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFR-ILG-E------------------A-HLPTFYVPGPQ 72 (224)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHH-HHH-h------------------c-CCceEEEcCCC
Confidence 467788887776543 4799999999543211 111223333 221 0 1 35889999998
Q ss_pred HHH
Q psy8242 140 VSA 142 (248)
Q Consensus 140 ~aa 142 (248)
-..
T Consensus 73 D~~ 75 (224)
T cd07388 73 DAP 75 (224)
T ss_pred ChH
Confidence 865
No 90
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=73 Score=28.69 Aligned_cols=60 Identities=18% Similarity=0.413 Sum_probs=37.0
Q ss_pred EecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcC
Q psy8242 9 ILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTG 87 (248)
Q Consensus 9 ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittG 87 (248)
+.+.|-.|+-..+-=+...|++++. -|++||...+ |. ++.|-.+++++ +++++|+||.-|
T Consensus 184 vVrg~PIlnDaT~EDak~~~i~~i~-------~vittG~~~v--Gi------~l~d~s~Ef~~----~f~~adlIIaKG 243 (285)
T COG1578 184 VVRGGPILNDATMEDAKEAGIDEIA-------KVITTGSDIV--GI------WLEDVSEEFRE----AFESADLIIAKG 243 (285)
T ss_pred EEcCCceechhhHHHHHHcCcchhh-------eeecCCCCcc--ee------eHHhccHHHHH----HhccCCEEEecC
Confidence 3444555666666666777766553 3688888664 11 33444555554 456889999866
No 91
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=34.23 E-value=85 Score=26.14 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCcEEEEcC----CCCCCCCchHHHHHHHhcC
Q psy8242 67 DLLLQCLKSNLASCDVIISTG----SVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittG----G~s~g~~D~~~~~l~~~~g 106 (248)
+.+.+.|++.+++||.++.+- |+|-|---++.+.++ +++
T Consensus 70 ~~~~~~ir~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~-~~~ 112 (192)
T smart00864 70 EESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAK-EYG 112 (192)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccccHHHHHHHHHH-HcC
Confidence 345566777778889988654 455454445555555 444
No 92
>PRK11096 ansB L-asparaginase II; Provisional
Probab=33.85 E-value=76 Score=29.47 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCCeEEeecCCeEEEEecCCcccCCC-C---CC-----CCC---------------------------ccccCCHHHHHH
Q psy8242 28 GVTSITVYKKPIIHILSTGNELDEPD-A---HV-----LKP---------------------------GICRDDPDLLLQ 71 (248)
Q Consensus 28 Gi~~V~V~~~prV~iistG~El~~~~-~---~~-----~~~---------------------------~~v~Dd~~~i~~ 71 (248)
|.+-+- .++|||.||+||--|..-. . .. +.. .+-++|-..|.+
T Consensus 14 ~~~~~~-~~~~~I~vi~TGGTIa~~~~~~~~~~~~~g~~~~~~ll~~vp~l~~~~~i~~~~~~~~dS~~~t~~~~~~l~~ 92 (347)
T PRK11096 14 GFSGAA-FALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDEVWLTLAK 92 (347)
T ss_pred HHHhhh-ccCCcEEEEeCCCccccccCCccccccccCCCCHHHHHHhCccccccceEEEEEcccCCcccCCHHHHHHHHH
Confidence 455555 6689999999999995421 1 00 100 234455667777
Q ss_pred HHHHhcCCCcEEEEcCCC
Q psy8242 72 CLKSNLASCDVIISTGSV 89 (248)
Q Consensus 72 ~l~~a~~~~DvvittGG~ 89 (248)
.+++..+++|=+|.|-|+
T Consensus 93 ~i~~~~~~~dGiVVtHGT 110 (347)
T PRK11096 93 KINTDCDKTDGFVITHGT 110 (347)
T ss_pred HHHHhcCCCCEEEEeCCC
Confidence 777755677877777776
No 93
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=33.59 E-value=77 Score=27.68 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCCCCCchHHHHHHHhcC-Cceee--------eeeeeecCCcEEEEEeC-CEEE-EEcCCChHHHHHHH
Q psy8242 78 ASCDVIISTGSVSMGDKDYLKDILVTDLG-ASIHF--------GRVNMKPGKPTTFATLG-NKLI-FCLPGNPVSAMVTC 146 (248)
Q Consensus 78 ~~~DvvittGG~s~g~~D~~~~~l~~~~g-~~~~f--------~~v~~~PG~p~~~g~~~-~~~v-~~LPG~P~aa~~~~ 146 (248)
++||++|++|-+..-..+.+.++.+ ++- .+.++ .|+-- .+....++-++ -.|| +-+||.|..-...+
T Consensus 70 RhADvliVtG~VT~km~~~L~rlye-qmPePK~VIA~GaCA~sGGif~-~dsy~~v~gvd~vIPVDv~IPGCPP~PeaIi 147 (225)
T CHL00023 70 RQADLILTAGTVTMKMAPSLVRLYE-QMPEPKYVIAMGACTITGGMFS-TDSYSTVRGVDKLIPVDVYLPGCPPKPEAVI 147 (225)
T ss_pred ccceEEEEecCCccccHHHHHHHHH-hcCCCCeEEEEccccccCCccc-CCCcccccCccccceeeEEecCCCCCHHHHH
Confidence 5799999999988777777777766 432 12111 11110 01111122122 2455 88999998887766
Q ss_pred HHHHHHHHHHhc
Q psy8242 147 HLFVLPALKALA 158 (248)
Q Consensus 147 ~~~v~P~l~~l~ 158 (248)
+.++ -+..++.
T Consensus 148 ~~l~-~L~~ki~ 158 (225)
T CHL00023 148 DAIT-KLRKKIS 158 (225)
T ss_pred HHHH-HHHHHHh
Confidence 6654 3444443
No 94
>PRK13018 cell division protein FtsZ; Provisional
Probab=33.22 E-value=62 Score=30.46 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCcEEEEc----CCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 68 LLLQCLKSNLASCDVIIST----GSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 68 ~i~~~l~~a~~~~Dvvitt----GG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
+..+.|+++++.||+++.+ ||+|-|--=++.+.++ ++| .....+-..|-.
T Consensus 101 e~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iak-e~g--~ltv~vVt~Pf~ 154 (378)
T PRK13018 101 ESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAK-EQG--ALVVGVVTKPFK 154 (378)
T ss_pred HHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHH-HcC--CCeEEEEEcCcc
Confidence 3445566777899999876 4555565666777777 666 344566677754
No 95
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=33.12 E-value=68 Score=28.93 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCcEEEEc----CCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 69 LLQCLKSNLASCDVIIST----GSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 69 i~~~l~~a~~~~Dvvitt----GG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
..+.|++++++||+++.+ ||+|-|--=++.+..+ ++| . ....+-..|-.
T Consensus 74 ~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~-e~g-~-~~~~vvt~Pf~ 126 (304)
T cd02201 74 SREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAK-EMG-A-LTVAVVTKPFS 126 (304)
T ss_pred HHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHH-HcC-C-CEEEEEeCCcc
Confidence 344566667789999876 4565555455556666 666 2 34445556654
No 96
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=33.08 E-value=3.1e+02 Score=23.34 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=37.9
Q ss_pred cCCeEEEEecCCcccCCCCCC-CCC-ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCC
Q psy8242 36 KKPIIHILSTGNELDEPDAHV-LKP-GICRDDPDLLLQCLKSNLASCDVIISTGSVSMG 92 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~~-~~~-~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g 92 (248)
.-.||++++.-.......... ... ....++.+.+++.++++-+++|+||..--.|..
T Consensus 129 ~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~e 187 (239)
T cd07381 129 NGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKKADIVIVSLHWGVE 187 (239)
T ss_pred CCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhcCCEEEEEecCccc
Confidence 456788888544333222101 111 267888999999999887789999988776653
No 97
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=32.21 E-value=62 Score=30.32 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHhcCCCcE----EE---EcCCCCCCCCchHHHHHHHhcCCceeeeeeeeec
Q psy8242 63 RDDPDLLLQCLKSNLASCDV----II---STGSVSMGDKDYLKDILVTDLGASIHFGRVNMKP 118 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~~Dv----vi---ttGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~P 118 (248)
+.-.+++.+.|++.+++||- +| ..||+|-|---++-+.|+++++ +.....+.+-|
T Consensus 79 ~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~-~~~~~~~~v~P 140 (379)
T cd02190 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFP-EVYRFVTSVYP 140 (379)
T ss_pred hhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcC-ccceEEEeecC
Confidence 34456778888888888983 33 4577877766777777775444 33344455555
No 98
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=32.19 E-value=37 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=12.9
Q ss_pred HHHhcCCCcEEEE-cCCCCC
Q psy8242 73 LKSNLASCDVIIS-TGSVSM 91 (248)
Q Consensus 73 l~~a~~~~Dvvit-tGG~s~ 91 (248)
+++++..+|++|| ||..++
T Consensus 72 ~~~a~~~adi~vtaTG~~~v 91 (162)
T PF00670_consen 72 LEEALRDADIFVTATGNKDV 91 (162)
T ss_dssp HHHHTTT-SEEEE-SSSSSS
T ss_pred HHHHHhhCCEEEECCCCccc
Confidence 4567889999997 665443
No 99
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=30.31 E-value=78 Score=29.20 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred ccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc
Q psy8242 3 IRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL 77 (248)
Q Consensus 3 ~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~ 77 (248)
+...-+|+++|++|++.+-.+|..+||.-.++ +---.++..-|. +.++.. +.=|.+.+.+.+.++.
T Consensus 161 I~~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~-gl~l~~vyd~g~-i~~~~v-------L~i~~e~~~~~~~~a~ 226 (323)
T PTZ00240 161 IVTEKKVLSVGDKVDNSTATLLQKLNISPFYY-QVEVLSVWDRGV-LFTRED-------LSMTEDVVEKMLMEGL 226 (323)
T ss_pred EecCeEEecCCCCcCHHHHHHHHHcCCCeEEE-EEEEEEEEeCCe-ecCHHH-------cCCCHHHHHHHHHHHH
Confidence 44556899999999999999999999998775 333345555554 444332 2223455555555543
No 100
>PTZ00489 glutamate 5-kinase; Provisional
Probab=30.00 E-value=97 Score=27.53 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=35.8
Q ss_pred eEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE-cCCCCCCCCch--------HHHHHHHhcC
Q psy8242 39 IIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS-TGSVSMGDKDY--------LKDILVTDLG 106 (248)
Q Consensus 39 rV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit-tGG~s~g~~D~--------~~~~l~~~~g 106 (248)
|--||-.|.-++.... .+-....+.|.+.+.+..+..++||. +||++.|..-+ .++++. +.|
T Consensus 9 ~riVIKlG~Svit~~~-----~~~~~~~~~l~~~i~~l~~~~~vilVssGava~g~~~~~~~~~~~~~~qa~a-aiG 79 (264)
T PTZ00489 9 KRIVVKVGSSILVDNQ-----EIAAHRIEALCRFIADLQTKYEVILVTSGAVAAGYTKKEMDKSYVPNKQALA-SMG 79 (264)
T ss_pred CEEEEEeccceeeCCC-----CcCHHHHHHHHHHHHHHhcCCeEEEEecChHhcChhhcCCCccccHHHHHHH-HhC
Confidence 3346777776765432 11123356677777765556787665 77777665511 356666 555
No 101
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=29.57 E-value=1.8e+02 Score=25.79 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.9
Q ss_pred eeeecCCcEEEEEeC---------CEEEEEcCCChHHHHH
Q psy8242 114 VNMKPGKPTTFATLG---------NKLIFCLPGNPVSAMV 144 (248)
Q Consensus 114 v~~~PG~p~~~g~~~---------~~~v~~LPG~P~aa~~ 144 (248)
|++|=|.|.+||+-+ +.++=..||-..+..+
T Consensus 85 VRLKgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~ 124 (244)
T COG0007 85 VRLKGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAA 124 (244)
T ss_pred EEecCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHH
Confidence 789999999999854 7899999998766544
No 102
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.54 E-value=82 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcC-CCcEEEEcCCCCCC----CCchHHHHHHHhcC
Q psy8242 67 DLLLQCLKSNLA-SCDVIISTGSVSMG----DKDYLKDILVTDLG 106 (248)
Q Consensus 67 ~~i~~~l~~a~~-~~DvvittGG~s~g----~~D~~~~~l~~~~g 106 (248)
+.+..+++-.-+ .+..||+|||.+.+ +.+.+++.+. +.|
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~-~~g 64 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLI-ELG 64 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHH-HcC
Confidence 444444443333 37999999999765 5677777777 555
No 103
>PRK13530 arsenate reductase; Provisional
Probab=29.21 E-value=2.8e+02 Score=21.65 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC-CchHHHHHHHhcCCce
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD-KDYLKDILVTDLGASI 109 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~-~D~~~~~l~~~~g~~~ 109 (248)
++||.+++|||--. ..+.+++-+....-++-+.|.|+.... .-.+.++++ +.|..+
T Consensus 3 ~~~vLFvC~~N~cR----------------S~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~-e~Gi~~ 59 (133)
T PRK13530 3 KKTIYFLCTGNSCR----------------SQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMK-EVGIDI 59 (133)
T ss_pred CCEEEEEcCCchhH----------------HHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHH-HcCCCc
Confidence 67899999998443 344445444333346888999996544 346677777 667543
No 104
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=28.68 E-value=1.1e+02 Score=27.73 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=56.0
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
+.|+.-|++++...++. |.+.|+.-..+-.+ =.|++.++.... . ....+..+.+.+.++.. .+.+++|+
T Consensus 114 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~--~~i~t~~~~~~a--~-----~~~~~~~~~~~~~~~~~-~~~~v~Vv 183 (292)
T cd04258 114 DELLSFGERMSSLLFSEALREQGVPAEWFDVR--TVLRTDSRFGRA--A-----PDLNALAELAAKLLKPL-LAGTVVVT 183 (292)
T ss_pred hHhhhHHHHHHHHHHHHHHHhCCCCeEEEchH--HeEEecCCCccc--c-----ccHHHHHHHHHHHHHHh-hcCCEEEE
Confidence 67788899999888876 66899987766433 235554432110 0 00111123344444443 35599999
Q ss_pred cCCCCCC-----------CCchHHHHHHHhcCCc
Q psy8242 86 TGSVSMG-----------DKDYLKDILVTDLGAS 108 (248)
Q Consensus 86 tGG~s~g-----------~~D~~~~~l~~~~g~~ 108 (248)
+|..+.. .-|++...+...++++
T Consensus 184 ~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~ 217 (292)
T cd04258 184 QGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAE 217 (292)
T ss_pred CCccccCCCCCEEecCCCchHHHHHHHHHHcCCC
Confidence 9997643 3388888888566654
No 105
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=28.14 E-value=75 Score=29.14 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=43.9
Q ss_pred HHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHHHH
Q psy8242 69 LLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVSAM 143 (248)
Q Consensus 69 i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~aa~ 143 (248)
+++.|..+++ -.|+||||||. +..+.++ .+|...+ .+-..--+. ...+-++++..+ |...+
T Consensus 70 lr~ii~~Li~~~~VD~iVtTgan------i~hD~~~-~lg~~~y-~G~~~~dd~~Lr~~GinRIgdv~i------p~e~y 135 (312)
T PRK01221 70 LRGLIADLIKRGLFNVVITTCGT------LDHDIAR-SFGGVYY-KGSFDIDDAMLKDLGIHRLGNVLI------PVESY 135 (312)
T ss_pred HHHHHHHHHHcCCeeEEEeCCCc------hHHHHHH-HcCCCeE-ecCCCCChHHHHHcCCCcceeecc------ChHHH
Confidence 4555555554 37999999987 4556666 6764322 111000000 112234445444 56666
Q ss_pred -HHHHHHHHHHHHHhcC
Q psy8242 144 -VTCHLFVLPALKALAG 159 (248)
Q Consensus 144 -~~~~~~v~P~l~~l~G 159 (248)
..|+.++.|++..+..
T Consensus 136 ~~~~E~~i~~il~~~~~ 152 (312)
T PRK01221 136 GPLIEKFVRKFLEELYK 152 (312)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 5588999999998853
No 106
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=27.88 E-value=2.4e+02 Score=26.69 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred CEEecCCceeCHH-HHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPP-ELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~-~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
+.|+.-|++++.. ..+.|.+.|+..+.+... ...+++.++ .+. . . +..+...+.+++.++...+.|+
T Consensus 106 d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~-~~~l~t~~~----~~~-~---~---~~~~~~~~~l~~~l~~~~vpVv 173 (441)
T TIGR00657 106 DRILSFGERLSAALLSAALEELGVKAVSLLGG-EAGILTDSN----FGR-A---R---VIIEILTERLEPLLEEGIIPVV 173 (441)
T ss_pred hheecHHHHHHHHHHHHHHHhCCCCCEEEEcC-cceEEecCC----CCc-e---e---ecHhhhHHHHHHHHhcCCEEEE
Confidence 6688889999997 556788999987777543 445554442 111 0 1 1223444556666666788999
Q ss_pred cCCCCC-----------CCCchHHHHHHHhcCCc-eeee
Q psy8242 86 TGSVSM-----------GDKDYLKDILVTDLGAS-IHFG 112 (248)
Q Consensus 86 tGG~s~-----------g~~D~~~~~l~~~~g~~-~~f~ 112 (248)
+|..+. |.-|++...+...++++ +.++
T Consensus 174 ~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~ 212 (441)
T TIGR00657 174 AGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIY 212 (441)
T ss_pred eCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEE
Confidence 885322 23488888888677764 4443
No 107
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=27.52 E-value=1.2e+02 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHhc-CCCcEEEEcCCCCC
Q psy8242 62 CRDDPDLLLQCLKSNL-ASCDVIISTGSVSM 91 (248)
Q Consensus 62 v~Dd~~~i~~~l~~a~-~~~DvvittGG~s~ 91 (248)
..+..+.+++++++.. .+.|+||.+|=..-
T Consensus 22 ~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~ 52 (267)
T cd07396 22 YRNSLEKLEEAVEEWNRESLDFVVQLGDIID 52 (267)
T ss_pred HHHhHHHHHHHHHHHHcCCCCEEEECCCeec
Confidence 3456778888888774 35999999997753
No 108
>PRK09034 aspartate kinase; Reviewed
Probab=26.83 E-value=98 Score=29.65 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=59.8
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
|.|+.-|++++...++. |.+.|+....+-.+ .++++++++. +. . .+..++.+.+ .+...+.+++|+
T Consensus 113 d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~-~~~~~t~~~~----~~-a---~i~~~~~~~~----~~~~~~~~v~Vv 179 (454)
T PRK09034 113 DAFKARGEDLNAKLIAAYLNYEGIPARYVDPK-EAGIIVTDEP----GN-A---QVLPESYDNL----KKLRDRDEKLVI 179 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcEEEchH-HceEEecCCc----Cc-e---eEcHhhHHHH----HHHHhcCCEEEe
Confidence 56778899999988876 67899988877544 5778877642 21 0 2333333333 333446789999
Q ss_pred cCCCCC-----------CCCchHHHHHHHhcCCc
Q psy8242 86 TGSVSM-----------GDKDYLKDILVTDLGAS 108 (248)
Q Consensus 86 tGG~s~-----------g~~D~~~~~l~~~~g~~ 108 (248)
+|=.+. |.-|++..++...++++
T Consensus 180 ~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~ 213 (454)
T PRK09034 180 PGFFGVTKDGQIVTFSRGGSDITGAILARGVKAD 213 (454)
T ss_pred cCccccCCCCCEEecCCCcHHHHHHHHHHHcCCC
Confidence 997654 34599999998667765
No 109
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=26.43 E-value=1.2e+02 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHhcC---CCcEEEEcCCCCC
Q psy8242 64 DDPDLLLQCLKSNLA---SCDVIISTGSVSM 91 (248)
Q Consensus 64 Dd~~~i~~~l~~a~~---~~DvvittGG~s~ 91 (248)
|..+.++++++++.+ +.|+||.||=..-
T Consensus 37 ~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~ 67 (275)
T PRK11148 37 NTWESYQAVLEAIRAQQHEFDLIVATGDLAQ 67 (275)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEECCCCCC
Confidence 345667777776532 5899999996654
No 110
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=26.26 E-value=1.8e+02 Score=27.28 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHHHHhcC---CCcEEEEcCCCCCCCC--------chHHHHHHHhcC--Ccee--------eeeee-eecCCcEE-E
Q psy8242 68 LLLQCLKSNLA---SCDVIISTGSVSMGDK--------DYLKDILVTDLG--ASIH--------FGRVN-MKPGKPTT-F 124 (248)
Q Consensus 68 ~i~~~l~~a~~---~~DvvittGG~s~g~~--------D~~~~~l~~~~g--~~~~--------f~~v~-~~PG~p~~-~ 124 (248)
..++.++++++ ..||+|.-|++...+. .-..+.++ ++- +..+ |-+|. ++|. |+. .
T Consensus 99 ~ae~~l~~~~~~~~g~~ILvVEGaIp~~~~G~y~~~~g~~~~e~l~-~~a~~A~aVIAvGtCAs~GGI~aa~pn-ptga~ 176 (365)
T TIGR00391 99 QAEENKHDAIEKYKGQYILVVEGSIPLGDNGIYCMVAGEPIVEHIR-KAAEGAAAIIAIGTCSSWGGVQAAGPN-PTGAV 176 (365)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCceeeeeCCcHHHHHHH-HHhhcCCEEEEEeccccccCccCCCCC-CCCCc
Confidence 34455555554 4799999999977653 22334443 221 1222 23443 3332 222 1
Q ss_pred E---EeCCEEEEEcCCChHHHHHHHHHHH
Q psy8242 125 A---TLGNKLIFCLPGNPVSAMVTCHLFV 150 (248)
Q Consensus 125 g---~~~~~~v~~LPG~P~aa~~~~~~~v 150 (248)
+ .+.++||+.+||-|..--.....++
T Consensus 177 ~v~~vi~~~pvinIPGCPp~Pe~i~~tl~ 205 (365)
T TIGR00391 177 PLQKVIPDKPVINVPGCPPNPHNFLATVA 205 (365)
T ss_pred chhHhcCCCCeEEeCCCCCCHHHHHHHHH
Confidence 1 2347899999999998766555543
No 111
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=26.21 E-value=37 Score=22.16 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=11.2
Q ss_pred CCceeeeeeeeecCCc
Q psy8242 106 GASIHFGRVNMKPGKP 121 (248)
Q Consensus 106 g~~~~f~~v~~~PG~p 121 (248)
|.++.|.||+|+|=+.
T Consensus 33 g~E~vFEGvr~kPy~t 48 (51)
T PF09178_consen 33 GEEVVFEGVRLKPYKT 48 (51)
T ss_dssp SS-EEETTEEE-TT-E
T ss_pred CCEEEEEEEEeeccee
Confidence 6689999999999764
No 112
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=26.15 E-value=1.2e+02 Score=24.37 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcC
Q psy8242 62 CRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 62 v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g 106 (248)
++|=|-+-++.|++ +.||+|++-|=+|....|-..-.-. +.|
T Consensus 41 IKdlpvaakrLiee--eGCd~Vi~lG~~G~t~~Dk~~~~~a-S~G 82 (154)
T COG1731 41 IKDLPVAAKRLIEE--EGCDIVIALGWVGPTEKDKYSYLAA-SIG 82 (154)
T ss_pred cccChHHHHHHHHh--cCCcEEEEccCcCcchhhHHHHHHH-hhH
Confidence 57777777766664 4899999999999999998765555 555
No 113
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.15 E-value=73 Score=23.40 Aligned_cols=36 Identities=25% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCcEEE-EcCCCCCCCCchHHHHHHHhcC
Q psy8242 70 LQCLKSNLASCDVII-STGSVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 70 ~~~l~~a~~~~Dvvi-ttGG~s~g~~D~~~~~l~~~~g 106 (248)
...|.+.+.++|+|| .|+=+|......+++.-+ ..+
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ak-k~~ 75 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAK-KYG 75 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHH-HcC
Confidence 345677778899887 677777655555555555 444
No 114
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=26.03 E-value=88 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHhcCCCcEEEEcCCCCCCC----CchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 74 KSNLASCDVIISTGSVSMGD----KDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 74 ~~a~~~~DvvittGG~s~g~----~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
.+++.+||++|..||....+ +-+..-.+++.+|..+.+.+..+-|=+
T Consensus 112 ~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~ 162 (426)
T PRK10017 112 VRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQ 162 (426)
T ss_pred HHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcC
Confidence 34567899999999998664 122222233244555666665555543
No 115
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=26.00 E-value=54 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=31.2
Q ss_pred ccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCC
Q psy8242 3 IRKGATILEEGNLIGPPELGLLASVGVTSITVYKKP 38 (248)
Q Consensus 3 ~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~p 38 (248)
+....+++++|..|+|....+|..+||.-..+.-+.
T Consensus 151 i~~~~~v~~~G~~v~~~~a~lL~~LgI~p~~~~~~i 186 (330)
T PRK04019 151 IKKDTVVAKAGEVISPELANVLQKLGIKPIEVGLDL 186 (330)
T ss_pred EecCeEEecCCCCcCHHHHHHHHHcCCCHHHhhhHH
Confidence 566789999999999999999999999987775554
No 116
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=25.85 E-value=92 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=18.2
Q ss_pred ccCCHHHHHHHHHHhcCCCcEEEEcCCC
Q psy8242 62 CRDDPDLLLQCLKSNLASCDVIISTGSV 89 (248)
Q Consensus 62 v~Dd~~~i~~~l~~a~~~~DvvittGG~ 89 (248)
-++|-..|.+.+++..+++|=+|+|=|+
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGT 88 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGT 88 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCc
Confidence 4455566777777666667766666665
No 117
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=24.54 E-value=1e+02 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=22.7
Q ss_pred eEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCC
Q psy8242 39 IIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS 79 (248)
Q Consensus 39 rV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~ 79 (248)
++.|++-|||++++.+ |.-+.+.+++++..++
T Consensus 4 giyv~PHgdEii~~~~---------~e~~~l~kA~k~i~~~ 35 (261)
T COG3885 4 GIYVIPHGDEIIDPED---------EESRKLNKAIKEIASD 35 (261)
T ss_pred cEEeccCCccccCCch---------hHHHHHHHHHHHHHcc
Confidence 6889999999998876 1235566677666543
No 118
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=24.14 E-value=91 Score=28.46 Aligned_cols=76 Identities=16% Similarity=0.379 Sum_probs=45.1
Q ss_pred HHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHHHH
Q psy8242 69 LLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVSAM 143 (248)
Q Consensus 69 i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~aa~ 143 (248)
+++.|+.+++ -.|+||||||. +..+.++ .+|.. +.....+ -+. ...+-|+++.. + |...+
T Consensus 61 lr~ii~~Li~~g~Vd~ivtTgan------l~hD~~~-~~g~~-~~g~f~~-dd~~Lr~~ginRI~dv~---i---p~e~y 125 (301)
T TIGR00321 61 MREIIAYLIQHGMIDALVTTGAN------LEHDLIE-ALGPT-HLGDFAV-DDKKLREEGINRIGDVF---V---PNENF 125 (301)
T ss_pred HHHHHHHHHHcCCeeEEEeCCCc------hHHHHHH-HcCcc-cccCCCC-ChHHHHHcCCCccceec---C---CHHHH
Confidence 4445555554 38999999987 4556666 66633 2210000 010 11223444543 3 46889
Q ss_pred HHHHHHHHHHHHHhcC
Q psy8242 144 VTCHLFVLPALKALAG 159 (248)
Q Consensus 144 ~~~~~~v~P~l~~l~G 159 (248)
.-|+.++.|+++++..
T Consensus 126 ~~~E~~i~~i~~~~~~ 141 (301)
T TIGR00321 126 EVFEEWLVEIFSEMLG 141 (301)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 119
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.26 E-value=4.5e+02 Score=22.45 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCch--HHHHHHHhcCCceeeeeeeeecCCcEEEEEe-CCEEEEE-cCC
Q psy8242 63 RDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDY--LKDILVTDLGASIHFGRVNMKPGKPTTFATL-GNKLIFC-LPG 137 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~--~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~-~~~~v~~-LPG 137 (248)
||..+.+.+.+++..+ ..|.|+..|-.++....+ +-+.+++..... |-+-||.+..+..- +.-++.+ |.+
T Consensus 7 P~k~e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-----vilfp~~~~~i~~~aD~~~~~sllns 81 (205)
T TIGR01769 7 PEKSDEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-----VILFPGNVNGLSRYADAVFFMSLLNS 81 (205)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-----EEEECCCccccCcCCCEEEEEEeecC
Confidence 3443444444434443 479999888766644332 233444112211 23347777655432 2233332 333
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q psy8242 138 NPVSAMVTCHLFVLPALKAL 157 (248)
Q Consensus 138 ~P~aa~~~~~~~v~P~l~~l 157 (248)
.-..-.+..+....|.++++
T Consensus 82 ~~~~~i~g~~~~~~~~~~~~ 101 (205)
T TIGR01769 82 ADTYFIVGAQILGAITILKL 101 (205)
T ss_pred CCcchhhhHHHHHHHHHHHc
Confidence 33345667777778888775
No 120
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=22.91 E-value=1.3e+02 Score=28.56 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.0
Q ss_pred cCCeEEEEecCCcccCC
Q psy8242 36 KKPIIHILSTGNELDEP 52 (248)
Q Consensus 36 ~~prV~iistG~El~~~ 52 (248)
.+|||.||+||--|...
T Consensus 61 ~~p~I~ii~TGGTIa~~ 77 (404)
T TIGR02153 61 GLPKVSIISTGGTIASR 77 (404)
T ss_pred CCCEEEEEeCCchhccc
Confidence 45899999999988643
No 121
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.89 E-value=99 Score=27.27 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=14.8
Q ss_pred HhcCCCcEEEEcCCCCCCC
Q psy8242 75 SNLASCDVIISTGSVSMGD 93 (248)
Q Consensus 75 ~a~~~~DvvittGG~s~g~ 93 (248)
+++.++|++|..||....+
T Consensus 60 ~~l~~~D~vI~gGG~l~~d 78 (298)
T TIGR03609 60 RALRRADVVIWGGGSLLQD 78 (298)
T ss_pred HHHHHCCEEEECCcccccC
Confidence 4456889999999987754
No 122
>PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=22.86 E-value=1.2e+02 Score=32.91 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=30.9
Q ss_pred cCCCEEecCCceeCHHHHHHHHhCCCCeEEeecC
Q psy8242 4 RKGATILEEGNLIGPPELGLLASVGVTSITVYKK 37 (248)
Q Consensus 4 ~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~ 37 (248)
..|++++.+|+.|+...+-.+..+|+.+|.|+..
T Consensus 819 ~t~~~i~~~~~~i~~~~~~~i~~~~i~~v~iRS~ 852 (1156)
T PRK00566 819 ETGEVIVPAGTLIDEEIADKIEEAGIEEVKIRSV 852 (1156)
T ss_pred CCCcEEEcCCCccCHHHHHHHHHcCCCEEEEcCC
Confidence 3599999999999999999999999999999544
No 123
>PRK12354 carbamate kinase; Reviewed
Probab=22.57 E-value=2.2e+02 Score=26.11 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=33.5
Q ss_pred HHHHHhcCCCcEEEEcCCCC----------------CCCCchHHHHHHHhcCCceee-----eeeeeecCCc
Q psy8242 71 QCLKSNLASCDVIISTGSVS----------------MGDKDYLKDILVTDLGASIHF-----GRVNMKPGKP 121 (248)
Q Consensus 71 ~~l~~a~~~~DvvittGG~s----------------~g~~D~~~~~l~~~~g~~~~f-----~~v~~~PG~p 121 (248)
+.|+.+++.--++|.+||=| +.+.|.+...|++.++++.++ .+|...+|+|
T Consensus 166 ~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~~p 237 (307)
T PRK12354 166 RPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGKP 237 (307)
T ss_pred HHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCCCC
Confidence 34555555556677775533 346799999998778876432 4677777776
No 124
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.50 E-value=59 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.2
Q ss_pred HhcCCCcEEEEcCCCC
Q psy8242 75 SNLASCDVIISTGSVS 90 (248)
Q Consensus 75 ~a~~~~DvvittGG~s 90 (248)
+.+++||+||+|.|..
T Consensus 60 ~~~~daDivVitag~~ 75 (299)
T TIGR01771 60 SDCKDADLVVITAGAP 75 (299)
T ss_pred HHHCCCCEEEECCCCC
Confidence 3457899999999984
No 125
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=22.50 E-value=1.9e+02 Score=26.57 Aligned_cols=51 Identities=27% Similarity=0.481 Sum_probs=32.5
Q ss_pred HHHHHhcCCCcEEEEcCCC-----C----------CCCCchHHHHHHHhcCCcee-e----eeeeeecCCc
Q psy8242 71 QCLKSNLASCDVIISTGSV-----S----------MGDKDYLKDILVTDLGASIH-F----GRVNMKPGKP 121 (248)
Q Consensus 71 ~~l~~a~~~~DvvittGG~-----s----------~g~~D~~~~~l~~~~g~~~~-f----~~v~~~PG~p 121 (248)
++|+..++.-.++|++||. + +.+.|.+...++..++++.+ | .+|...+++|
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p 246 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKP 246 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCC
Confidence 3455555566788888773 2 23569998888767787533 2 4666666654
No 126
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=22.16 E-value=1.5e+02 Score=28.38 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=33.3
Q ss_pred cCCeEEEEecCCcccCCCCCC---CCC-------------------------------ccccCCHHHHHHHHHHhcCC-C
Q psy8242 36 KKPIIHILSTGNELDEPDAHV---LKP-------------------------------GICRDDPDLLLQCLKSNLAS-C 80 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~~---~~~-------------------------------~~v~Dd~~~i~~~l~~a~~~-~ 80 (248)
..|+|.||+||--|....... ..+ .+-++|-..|.+.+++.+++ +
T Consensus 74 ~~~~I~ii~TGGTIa~~~~~~~G~~~p~~~~~~ll~~vp~l~~~a~i~~~~~~~idS~~mtp~~W~~La~~I~~~~~~~~ 153 (419)
T PRK04183 74 GLPNVSILSTGGTIASKVDYRTGAVTPAFTAEDLLRAVPELLDIANIRGRVLFNILSENMTPEYWVEIAEAVYEEIKNGA 153 (419)
T ss_pred CCCEEEEEeCCchhccccccCCCcccCCCCHHHHHHhChhhcccceEEEEEeccCCchhCCHHHHHHHHHHHHHHhhccC
Confidence 368999999999886533200 111 23344556677777766654 7
Q ss_pred cEEEEcCCC
Q psy8242 81 DVIISTGSV 89 (248)
Q Consensus 81 DvvittGG~ 89 (248)
|=+|+|=|+
T Consensus 154 dGvVVtHGT 162 (419)
T PRK04183 154 DGVVVAHGT 162 (419)
T ss_pred CeEEEecCC
Confidence 766666665
No 127
>PF13245 AAA_19: Part of AAA domain
Probab=22.09 E-value=1.1e+02 Score=21.54 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 72 CLKSNLASCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 72 ~l~~a~~~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
+|++++++..+++.+|+-|-|+--.+.+.+.
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHH
Confidence 4454555789999999999999877777666
No 128
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.06 E-value=1.3e+02 Score=23.84 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=20.8
Q ss_pred CceeCHHHHHHHHhCCCCeEEeecC
Q psy8242 13 GNLIGPPELGLLASVGVTSITVYKK 37 (248)
Q Consensus 13 G~~l~p~~i~~Las~Gi~~V~V~~~ 37 (248)
.-.+++.++.-+++.|+..|-..|+
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRP 37 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRP 37 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCC
Confidence 3458999999999999999887654
No 129
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.74 E-value=1.6e+02 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.094 Sum_probs=18.6
Q ss_pred ccCCHHHHHHHHHHhcC--CCcEEEEcCCC
Q psy8242 62 CRDDPDLLLQCLKSNLA--SCDVIISTGSV 89 (248)
Q Consensus 62 v~Dd~~~i~~~l~~a~~--~~DvvittGG~ 89 (248)
-+.|...|.+.+++.++ .+|=+|.|-|+
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGT 115 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGT 115 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 34556677777777664 46777777766
No 130
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=21.74 E-value=64 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.9
Q ss_pred HhcCCCcEEEEcCCCCC
Q psy8242 75 SNLASCDVIISTGSVSM 91 (248)
Q Consensus 75 ~a~~~~DvvittGG~s~ 91 (248)
+++++||+||.|.|...
T Consensus 65 ~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR 81 (141)
T ss_dssp GGGTTESEEEETTSTSS
T ss_pred cccccccEEEEeccccc
Confidence 44678999999999964
No 131
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=21.46 E-value=1.1e+02 Score=31.32 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHhcCC-------CcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeee
Q psy8242 63 RDDPDLLLQCLKSNLAS-------CDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRV 114 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~-------~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v 114 (248)
.||...+++.|.+-..+ -|+||+=||- |.-..+.++|+ ++|..+-+-++
T Consensus 499 ~DD~asM~Evl~RR~~r~~~~~~~PDLilIDGGk--gQl~aa~~vl~-elgl~i~vigL 554 (691)
T PRK14672 499 IDDFASMREAIARRYTHTPEGYTLPDLILVDGGI--GHVSAAQHVLD-ALGLSIPLVGL 554 (691)
T ss_pred CchHHHHHHHHHHHhhcccccCCCCCEEEEeCCH--HHHHHHHHHHH-HcCCCCcEEEE
Confidence 59999999999876633 5999999987 46666788887 78865444444
No 132
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=21.46 E-value=96 Score=24.20 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 65 DPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 65 d~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
|.-.++.+|+.+.+ .++-|++.|++| |+.|++-.-+.
T Consensus 69 D~TD~e~Al~~~~~~~~~~i~v~Ga~G-gR~DH~lanl~ 106 (123)
T PF04263_consen 69 DYTDLEKALEYAIEQGPDEIIVLGALG-GRFDHTLANLN 106 (123)
T ss_dssp TS-HHHHHHHHHHHTTTSEEEEES-SS-SSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEecCC-CcHHHHHHHHH
Confidence 34566778877653 688999999999 89999977665
No 133
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=21.10 E-value=1.1e+02 Score=30.60 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhcCC--------CcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeee
Q psy8242 63 RDDPDLLLQCLKSNLAS--------CDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVN 115 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~--------~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~ 115 (248)
+||..++++.|.+-... -|+||+=||- |.-..+.++|+ ++|..+-+-+++
T Consensus 427 ~dDya~m~Evl~RR~~~~~~~~~~~PDLiliDGGk--gQl~~a~~~l~-~lg~~i~v~gla 484 (598)
T PRK00558 427 GDDYAAMREVLTRRYSRLLKEFGPLPDLILIDGGK--GQLNAAKEVLE-ELGLDIPVVGLA 484 (598)
T ss_pred CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCH--HHHHHHHHHHH-HCCCCCcEEEEE
Confidence 59999999998876522 4999999987 56677788888 788654444443
No 134
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.02 E-value=1.7e+02 Score=26.90 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=18.5
Q ss_pred cccCCHHHHHHHHHHhcCCCcEEEEcCCC
Q psy8242 61 ICRDDPDLLLQCLKSNLASCDVIISTGSV 89 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~~~~DvvittGG~ 89 (248)
+-++|-..|.+.|++..+++|=+|+|=|+
T Consensus 59 ~tp~~w~~la~~I~~~~~~~dG~VVtHGT 87 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDDYDGFVITHGT 87 (336)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEccCC
Confidence 34555566777776666667766666655
No 135
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.80 E-value=47 Score=30.19 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.6
Q ss_pred ecCCeEEEEecCCcccCCC
Q psy8242 35 YKKPIIHILSTGNELDEPD 53 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~ 53 (248)
-|+.|+.+++||+||..-.
T Consensus 70 ArKIrilFLATG~diR~Ns 88 (316)
T PF11281_consen 70 ARKIRILFLATGDDIRANS 88 (316)
T ss_pred eeeEEEEEEccCchhhhhH
Confidence 3678999999999997543
No 136
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=20.71 E-value=2.1e+02 Score=27.59 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=58.7
Q ss_pred CEEecCCceeCHHHHHH-HHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEE
Q psy8242 7 ATILEEGNLIGPPELGL-LASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIIS 85 (248)
Q Consensus 7 ~~ll~~G~~l~p~~i~~-Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dvvit 85 (248)
|.|+..|++++...++. |.+.|+.-..+..+ .++++. +++--... +. ...-+..+..++++..++|+
T Consensus 112 D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~-~~~i~t-~~~~~~a~-------i~---~~~~~~~l~~~~~~~~v~Vv 179 (447)
T COG0527 112 DELLSLGERLSAALLAAALNALGVDARSLDGR-QAGIAT-DSNHGNAR-------IL---DEDSERRLLRLLEEGKVPVV 179 (447)
T ss_pred HHHHhhchHHHHHHHHHHHHhCCCceEEEchH-Hceeee-cCcccccc-------cc---hhhhhhhHHHHhcCCcEEEe
Confidence 46788899999998874 78899988887544 555444 43321111 11 11111116667778899999
Q ss_pred cCCCCCCCC-----------chHHHHHHHhcCCc
Q psy8242 86 TGSVSMGDK-----------DYLKDILVTDLGAS 108 (248)
Q Consensus 86 tGG~s~g~~-----------D~~~~~l~~~~g~~ 108 (248)
+|=.|..+. |++..+|...++++
T Consensus 180 ~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad 213 (447)
T COG0527 180 AGFQGINEDGETTTLGRGGSDYSAAALAAALGAD 213 (447)
T ss_pred cCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCC
Confidence 986555444 99999998667765
No 137
>PLN00220 tubulin beta chain; Provisional
Probab=20.43 E-value=1.5e+02 Score=28.31 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhcCCCc---E-EE---EcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecC
Q psy8242 64 DDPDLLLQCLKSNLASCD---V-II---STGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPG 119 (248)
Q Consensus 64 Dd~~~i~~~l~~a~~~~D---v-vi---ttGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG 119 (248)
.-.+.+.+.|++.+++|| - +| +.||+|-|---++-+.|++.++ +.....+.+-|-
T Consensus 111 ~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~-~~~~~~~~v~P~ 172 (447)
T PLN00220 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPS 172 (447)
T ss_pred HHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc-ccceeeeEEECC
Confidence 335667778888888887 2 22 4577877766777777775554 444555556663
No 138
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.41 E-value=1.1e+02 Score=23.73 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCc-EEEEcCCCCCCCCchHHHHHH
Q psy8242 69 LLQCLKSNLASCD-VIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 69 i~~~l~~a~~~~D-vvittGG~s~g~~D~~~~~l~ 102 (248)
+.+.|.+.-.+.+ +|+++.-+--|..|.|.++-.
T Consensus 71 L~~~L~~yq~~H~~vILvspAVv~Ga~DIT~eiq~ 105 (112)
T TIGR02744 71 LEAELQAWQAQHHAIILVSPAVVSGAVDITDEIQT 105 (112)
T ss_pred HHHHHHHHHHhCCEEEEechhhhcCCCCCCHHHHH
Confidence 3444554444445 777999999999999988754
No 139
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=20.23 E-value=1.1e+02 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhcCCCcEEEEcCCCC
Q psy8242 65 DPDLLLQCLKSNLASCDVIISTGSVS 90 (248)
Q Consensus 65 d~~~i~~~l~~a~~~~DvvittGG~s 90 (248)
-.++|++.+++++.+.|+||.+|=.+
T Consensus 27 ~~~~i~~~~~~~~~~~D~viiaGDl~ 52 (232)
T cd07393 27 HTEKIKENWDNVVAPEDIVLIPGDIS 52 (232)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCCc
Confidence 34556666666666899999999665
No 140
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.14 E-value=2.7e+02 Score=26.31 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=0.0
Q ss_pred ceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCc----EEEEcCC-
Q psy8242 14 NLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCD----VIISTGS- 88 (248)
Q Consensus 14 ~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~D----vvittGG- 88 (248)
..++-.++..|...|+.-+ .|.-+.++.|+ .|. |..+| +++|.+.+.+.+..-| .+++|||
T Consensus 132 ~p~~~~Nl~~L~~~G~~ii----~P~~g~la~~~----~g~-----gr~~~-~~~I~~~~~~~~~~~~l~gk~vlITgG~ 197 (399)
T PRK05579 132 NPATQRNLATLRSRGVEII----GPASGRLACGD----VGP-----GRMAE-PEEIVAAAERALSPKDLAGKRVLITAGP 197 (399)
T ss_pred CHHHHHHHHHHHHCCCEEE----CCCCccccCCC----cCC-----CCCCC-HHHHHHHHHHHhhhcccCCCEEEEeCCC
Q ss_pred --------------CCCCCCchHHHHHHHhcCCceee
Q psy8242 89 --------------VSMGDKDYLKDILVTDLGASIHF 111 (248)
Q Consensus 89 --------------~s~g~~D~~~~~l~~~~g~~~~f 111 (248)
+|-.---.+.+.+. ..|+++.+
T Consensus 198 T~E~ID~VR~isN~SSG~~G~aiA~~l~-~~Ga~V~~ 233 (399)
T PRK05579 198 TREPIDPVRYITNRSSGKMGYALARAAA-RRGADVTL 233 (399)
T ss_pred ccccccceeeeccCCcchHHHHHHHHHH-HCCCEEEE
No 141
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.12 E-value=1.5e+02 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 66 PDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 66 ~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
+.+-.+.+++.++..|+=|..||+|--.+| +++|+
T Consensus 184 ~~EAak~lEdvLqAVdvPiiiGGSGnpeKD--peVle 218 (403)
T COG2069 184 AKEAAKTLEDVLQAVDVPIIIGGSGNPEKD--PEVLE 218 (403)
T ss_pred HHHHHHHHHHHHHhcCcCEEecCCCCCccC--HHHHH
Confidence 344566788888889999999999999999 44554
No 142
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=20.00 E-value=1e+02 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred cccCCHHHHHHHHHHhcCCCcEEEEcCCC
Q psy8242 61 ICRDDPDLLLQCLKSNLASCDVIISTGSV 89 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~~~~DvvittGG~ 89 (248)
+-++|...|.+.+++.++++|=+|+|-|+
T Consensus 54 ~t~~~~~~la~~i~~~~~~~~GvVVtHGT 82 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDDYDGVVVTHGT 82 (313)
T ss_dssp --HHHHHHHHHHHHHHHTTCSEEEEE--S
T ss_pred cCHHHHHHHHHHHHHHHHhcCeEEEecCc
Confidence 45667788888898888778888888877
Done!