Query psy8242
Match_columns 248
No_of_seqs 209 out of 1424
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8l_A Molybdopterin biosynthe 100.0 8.7E-60 3E-64 439.5 29.1 241 1-247 141-407 (411)
2 2fts_A Gephyrin; gephyrin, neu 100.0 8.8E-59 3E-63 433.9 27.8 243 1-247 145-419 (419)
3 1uz5_A MOEA protein, 402AA lon 100.0 2.3E-58 7.9E-63 428.8 28.7 234 1-247 144-402 (402)
4 1wu2_A MOEA protein, molybdopt 100.0 1.6E-55 5.4E-60 409.0 20.1 225 1-244 146-396 (396)
5 3rfq_A Pterin-4-alpha-carbinol 100.0 7.5E-34 2.6E-38 238.3 6.0 138 19-159 13-179 (185)
6 1jlj_A Gephyrin; globular alph 100.0 8.7E-34 3E-38 238.9 4.8 136 24-161 1-169 (189)
7 2pjk_A 178AA long hypothetical 100.0 2E-32 6.7E-37 228.6 6.4 127 32-159 10-174 (178)
8 1y5e_A Molybdenum cofactor bio 100.0 1.2E-31 4.2E-36 221.9 4.5 127 30-160 6-165 (169)
9 3pzy_A MOG; ssgcid, seattle st 100.0 2.5E-30 8.7E-35 213.1 4.8 122 35-159 5-155 (164)
10 1uuy_A CNX1, molybdopterin bio 100.0 7.3E-30 2.5E-34 210.8 4.7 123 35-160 3-161 (167)
11 1mkz_A Molybdenum cofactor bio 100.0 1.3E-29 4.6E-34 210.3 3.4 124 35-160 8-161 (172)
12 2is8_A Molybdopterin biosynthe 99.9 1.5E-28 5.1E-33 202.4 6.7 122 37-160 1-152 (164)
13 2pbq_A Molybdenum cofactor bio 99.9 1.1E-27 3.6E-32 199.9 7.1 124 36-161 4-162 (178)
14 2g2c_A Putative molybdenum cof 99.9 2.6E-27 8.9E-32 195.5 3.6 120 37-159 5-162 (167)
15 1di6_A MOGA, molybdenum cofact 99.9 3.5E-26 1.2E-30 193.2 2.2 122 36-158 2-166 (195)
16 3iwt_A 178AA long hypothetical 99.9 1.2E-24 4E-29 180.9 7.1 127 32-159 10-174 (178)
17 3kbq_A Protein TA0487; structu 99.7 4.1E-18 1.4E-22 141.0 8.9 114 37-150 3-165 (172)
18 3p2y_A Alanine dehydrogenase/p 67.7 33 0.0011 31.0 9.8 89 69-158 255-355 (381)
19 3lti_A DNA-directed RNA polyme 66.2 7.1 0.00024 34.2 4.9 34 2-35 156-189 (296)
20 1gml_A T-complex protein 1 sub 61.9 10 0.00034 30.4 4.7 67 35-106 25-100 (178)
21 2nrr_A Uvrabc system protein C 54.1 7.6 0.00026 30.9 2.7 44 63-109 60-106 (159)
22 1rlz_A DHS, deoxyhypusine synt 50.5 11 0.00039 33.9 3.5 75 67-158 114-191 (369)
23 4dio_A NAD(P) transhydrogenase 49.5 48 0.0016 30.2 7.6 88 70-158 266-365 (405)
24 1yqw_A Periplasmic [NIFE] hydr 48.2 8.4 0.00029 33.2 2.2 81 67-151 54-160 (264)
25 2gp4_A 6-phosphogluconate dehy 46.5 0.63 2.2E-05 44.8 -5.6 104 32-142 80-203 (628)
26 2nrt_A Uvrabc system protein C 45.1 12 0.00043 31.2 2.7 45 63-110 65-112 (220)
27 3l4e_A Uncharacterized peptida 41.0 15 0.00052 30.0 2.7 61 37-106 27-101 (206)
28 3nxk_A Cytoplasmic L-asparagin 40.4 33 0.0011 30.4 4.9 54 36-89 7-98 (334)
29 1jl3_A Arsenate reductase; alp 39.6 54 0.0018 24.6 5.5 55 37-108 3-58 (139)
30 3rh0_A Arsenate reductase; oxi 38.5 46 0.0016 25.7 5.0 55 37-108 20-76 (148)
31 1jf8_A Arsenate reductase; ptp 36.5 65 0.0022 24.0 5.5 55 37-108 3-58 (131)
32 4ei7_A Plasmid replication pro 34.2 20 0.00068 32.5 2.5 57 61-120 93-153 (389)
33 1l7d_A Nicotinamide nucleotide 33.5 80 0.0027 27.9 6.4 86 72-158 250-347 (384)
34 3ayx_B Membrane-bound hydrogen 32.2 22 0.00076 30.8 2.3 81 67-151 60-171 (283)
35 3t38_A Arsenate reductase; low 32.0 48 0.0016 27.3 4.3 56 36-108 80-137 (213)
36 1yq9_A Periplasmic [NIFE] hydr 31.6 16 0.00054 31.4 1.3 82 67-151 54-161 (264)
37 1xm7_A Hypothetical protein AQ 31.6 1E+02 0.0035 23.9 6.2 36 67-102 31-68 (195)
38 3qxc_A Dethiobiotin synthetase 30.3 98 0.0033 25.7 6.1 46 63-109 115-164 (242)
39 1ass_A Thermosome; chaperonin, 30.3 59 0.002 25.3 4.4 66 36-106 20-94 (159)
40 2c92_A 6,7-dimethyl-8-ribityll 30.1 11 0.00036 30.1 -0.1 50 72-127 65-117 (160)
41 3rgw_S Membrane-bound hydrogen 29.9 34 0.0011 30.5 3.2 70 78-151 68-162 (339)
42 1w5f_A Cell division protein F 29.2 25 0.00086 31.4 2.2 50 68-120 94-147 (353)
43 3tm8_A BD1817, uncharacterized 28.4 17 0.00058 31.8 1.0 29 8-36 51-79 (328)
44 2l17_A Synarsc, arsenate reduc 27.5 99 0.0034 23.0 5.1 55 38-109 5-60 (134)
45 3jsy_A Acidic ribosomal protei 27.1 76 0.0026 26.0 4.7 48 3-52 152-199 (213)
46 3myr_A Hydrogenase (NIFE) smal 26.5 33 0.0011 29.5 2.4 81 67-151 51-160 (269)
47 2ij9_A Uridylate kinase; struc 26.3 99 0.0034 24.8 5.3 36 73-108 95-130 (219)
48 2rir_A Dipicolinate synthase, 26.2 43 0.0015 28.5 3.1 81 73-158 209-295 (300)
49 3lti_A DNA-directed RNA polyme 25.7 56 0.0019 28.5 3.8 87 5-102 111-205 (296)
50 1nns_A L-asparaginase II; amid 25.2 76 0.0026 27.8 4.6 29 61-89 61-89 (326)
51 1y1l_A Arsenate reductase (ARS 25.2 73 0.0025 23.4 3.9 40 67-108 13-54 (124)
52 1u2m_A Histone-like protein HL 24.0 62 0.0021 24.3 3.4 38 68-106 101-143 (143)
53 1cc1_S Hydrogenase (small subu 23.7 51 0.0017 28.5 3.1 30 129-159 155-184 (283)
54 1rq2_A Cell division protein F 23.7 32 0.0011 31.1 1.9 49 69-120 85-137 (382)
55 3d03_A Phosphohydrolase; glyce 23.6 78 0.0027 25.5 4.2 27 64-90 23-52 (274)
56 2fek_A Low molecular weight pr 22.6 1.3E+02 0.0044 23.5 5.1 54 37-108 22-79 (167)
57 4h7p_A Malate dehydrogenase; s 21.1 44 0.0015 29.6 2.2 24 75-98 96-123 (345)
58 1agx_A Glutaminase-asparaginas 20.7 1.2E+02 0.0042 26.4 5.1 36 61-101 62-99 (331)
59 2i0f_A 6,7-dimethyl-8-ribityll 20.6 56 0.0019 25.7 2.5 44 78-127 72-118 (157)
60 4pga_A Glutaminase-asparaginas 20.2 1E+02 0.0034 27.2 4.3 29 61-89 70-100 (337)
No 1
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=100.00 E-value=8.7e-60 Score=439.50 Aligned_cols=241 Identities=36% Similarity=0.541 Sum_probs=225.2
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 141 edv~~G~~vl~~G~~l~p~~i~llas~G~~~V~V~~~~rv~iistGdEl~~~g~-~~~~G~i~dsn~~~L~~~l~~~G~~ 219 (411)
T 1g8l_A 141 EDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQ-PLGDGQIYDTNRLAVHLMLEQLGCE 219 (411)
T ss_dssp SSBCTTSEEECTTCBCCTTTHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTS-CCCSSCEECCHHHHHHHHHHHTTCE
T ss_pred cEecCCCEEEcCCcEECHHHHHHHHhCCCceEEecCCCEEEEEEcCccccCCCC-CCCCCcEEcCchHHHHHHHHHCCCE
Confidence 589999999999999999999999999999999999999999999999999887 4333
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+++++++ ++| +++||+++|+||||+++|.+++++||+|
T Consensus 220 v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~g~~D~t~~al~-~~G-~i~f~~va~~PG~p~~~g~~~~~~v~~L 297 (411)
T 1g8l_A 220 VINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILE-ELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGL 297 (411)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCSSSCSHHHHHHH-HHS-EEEEEEBSEESCCEEEEEECSSSEEEEC
T ss_pred EEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCCCCcccHHHHHH-hcC-cEEEEEEEeeCCCcEEEEEECCEEEEEc
Confidence 6899999999999999998999999999999999999999999 899 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCC-CCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchh
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSH-PSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLS 214 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~-~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~ 214 (248)
||||.|++++|+.|+.|+|++|+|... ..++.++|+++++++++++|++|+|+++.+..+| .+++.|.+.|+|+++++
T Consensus 298 PGnP~sa~~~~~~~v~P~L~~l~g~~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~~~g-~~~~~p~~~~~S~~l~s 376 (411)
T 1g8l_A 298 PGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADG-ELEVTTTGHQGSHIFSS 376 (411)
T ss_dssp CSSHHHHHHHHHHTHHHHHHHHHTCCCCSCSCCEEEEESSCBCCCTTSEEEEEEEEEECTTS-CEEEEECSCCCTTCCTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCccCCCceEEEEccccccCCCCceEEEEEEEEEccCC-eEEEEECCCCCcHHHHH
Confidence 999999999999999999999999865 4566799999999999999999999999764444 38899999999999999
Q ss_pred cccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCC
Q psy8242 215 CKSCNGFAILPKATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 215 l~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
|++||||+++|++. +.+++|+.|+|++|+++
T Consensus 377 l~~Ad~li~ip~~~--~~~~~G~~V~v~~~~~~ 407 (411)
T 1g8l_A 377 FSLGNCFIVLERDR--GNVEVGEWVEVEPFNAL 407 (411)
T ss_dssp HHHCSEEEEECTTC--CCBCTTCEEEEEECCGG
T ss_pred HHHCCEEEEECCCC--CcCCCCCEEEEEEchHh
Confidence 99999999999997 78999999999999754
No 2
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=100.00 E-value=8.8e-59 Score=433.93 Aligned_cols=243 Identities=52% Similarity=0.889 Sum_probs=222.1
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 145 edi~~G~~ll~~G~~l~p~~iglLas~G~~~v~V~~~prv~IistGdEl~~~g~-~~~~G~i~dsN~~~L~~~l~~~G~~ 223 (419)
T 2fts_A 145 HDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPED-DLLPGKIRDSNRSTLLATIQEHGYP 223 (419)
T ss_dssp SSBCTTCEEECTTCBCCHHHHHHHHHHTCCEEEEECCCCEEEEEECTTEECTTS-CCCTTCEECCHHHHHHHHHHTTTCC
T ss_pred cCcCCCCEEECCCCCcCHHHHHHHHhCCCCeeEecCCCEEEEEEechhccCCCC-CCCCCcEecCchHHHHHHHHHCCCE
Confidence 599999999999999999999999999999999999999999999999999887 3332
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeC----CEE
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLG----NKL 131 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~----~~~ 131 (248)
++++||++.|+++|+++++++|+||||||+|+|++|++++++++.+|++++||+++|+||||+++|..+ +++
T Consensus 224 v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~~D~t~~al~~~lg~~~~f~~v~~~PG~p~~~g~~~~~~~~~~ 303 (419)
T 2fts_A 224 TINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKI 303 (419)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEETTEEEE
T ss_pred EEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCCcccHHHHHHHHcCCceEEeEEecCCCCceEEEEEeecCCCeE
Confidence 689999999999999999889999999999999999999999328888999999999999999999874 699
Q ss_pred EEEcCCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchh
Q psy8242 132 IFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSK 211 (248)
Q Consensus 132 v~~LPG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~ 211 (248)
||+|||||.|++++|+.|+.|+|++|+|.....++.++|+++++++++. |++|+|+++.+.+++..+++.+.+.|+|++
T Consensus 304 v~~LPG~P~sa~~~~~~~v~P~L~~~~g~~~~~~~~~~a~l~~~~~~~~-r~~f~r~~l~~~~~~~~~~~~~~~~~~S~~ 382 (419)
T 2fts_A 304 IFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWHHQEPLPWAQSTGNQMSSR 382 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEESSCEECCS-SCEEEEEEEECCTTCSSCEEEECCSCSSSC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHhcCCCCCCccceEEEeCCCcCCCC-ceEEEEEEEEEcCCceeEEEEeCCCCCcHH
Confidence 9999999999999999999999999999876556789999999999988 999999999764333336788999999999
Q ss_pred chhcccCcEEEEEe---CCCCCcCcCCCCEEEEEEcCCC
Q psy8242 212 LLSCKSCNGFAILP---KATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 212 l~~l~~an~li~ip---~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
+++|++||||+++| ++. +.+++|+.|+|++|+++
T Consensus 383 l~sl~~An~li~ip~~~~~~--~~~~~G~~V~v~~~~~~ 419 (419)
T 2fts_A 383 LMSMRSANGLLMLPPKTEQY--VELHKGEVVDVMVIGRL 419 (419)
T ss_dssp CCCSSCCCEEEEECCCCSSC--SEECTTCEEEEEECSCC
T ss_pred HHHHHHCcEEEEECCccCCC--CccCCCCEEEEEEeecC
Confidence 99999999999999 455 67999999999999764
No 3
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=100.00 E-value=2.3e-58 Score=428.83 Aligned_cols=234 Identities=30% Similarity=0.532 Sum_probs=211.5
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC---------------------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP--------------------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~--------------------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+++++ ++.+
T Consensus 144 edv~~G~~ll~~G~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~g~-~~~~G~i~DsN~~~L~~~l~~~G~~ 222 (402)
T 1uz5_A 144 IDIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGN-ELKPGQIYDINGRALCDAINELGGE 222 (402)
T ss_dssp SSBCTTCEEECTTCBCCHHHHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTS-CCCTTCEECCHHHHHHHHHHHHTSE
T ss_pred cEecCCCEEEcCCCEECHHHHHHHHhCCCceeeecCCCEEEEEEcCccccCCCC-CCCCCcEEcchHHHHHHHHHhCCCe
Confidence 589999999999999999999999999999999999999999999999998887 3332
Q ss_pred ----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEEc
Q psy8242 60 ----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135 (248)
Q Consensus 60 ----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~L 135 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+++++++ ++| +++||+++|+||||+++|.+++++||+|
T Consensus 223 v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~~D~t~~al~-~~G-~~~f~~va~~PG~p~~~g~~~~~~v~~L 300 (402)
T 1uz5_A 223 GIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKDLTASVIE-ELG-EVKVHGIAIQPGKPTIIGVIKGKPVFGL 300 (402)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-----CHHHHHHH-HHS-EEEEECBSEESCTTCEEEEETTEEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCCCcccHHHHHH-hhC-CEEEeeEeecCCCCEEEEEECCEEEEEC
Confidence 6899999999999999998899999999999999999999999 889 9999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchhc
Q psy8242 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215 (248)
Q Consensus 136 PG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~l 215 (248)
||||.|++++|++|+.|+|++++|.... .+.++|+|+++++++++|++|+|+++ .++ ++.|+ .|+|+++++|
T Consensus 301 PG~P~sa~~~~~~~v~P~L~~~~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l---~~g---~~~p~-~~~S~~l~sl 372 (402)
T 1uz5_A 301 PGYPTSCLTNFTLLVVPLLLRALGREGK-IGKKVARLKHKVFSVKGRRQFLPVKL---EGD---LAVPI-LKGSGAVTSF 372 (402)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHTTCSSC-CCEEEEEESSCCBCC--CEEEEEEEE---SSS---EEEEC-CSTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEE---eCC---EEEEc-CCCcHHHHHH
Confidence 9999999999999999999999997654 46889999999999999999999998 233 57788 5899999999
Q ss_pred ccCcEEEEEeCCCCCcCcCCCCEEEEEEcCCC
Q psy8242 216 KSCNGFAILPKATTKKTLEKNSLVNVILTKAF 247 (248)
Q Consensus 216 ~~an~li~ip~~~~~~~~~~G~~V~v~ll~~~ 247 (248)
++||||+++|++. +.+++|+.|+|++|+.+
T Consensus 373 ~~An~li~ip~~~--~~~~~G~~V~v~~~~~~ 402 (402)
T 1uz5_A 373 IDADGFVEIPETV--ESLDEGEEVEVTLFKGW 402 (402)
T ss_dssp HHCCEEEEECSSC--CBCCSEEEEEEEECCCC
T ss_pred HhCCEEEEECCCC--CcCCCCCEEEEEEecCC
Confidence 9999999999997 78999999999999764
No 4
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=100.00 E-value=1.6e-55 Score=409.04 Aligned_cols=225 Identities=27% Similarity=0.496 Sum_probs=200.0
Q ss_pred CCccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCccc-CCCCC---------CCCC-----------
Q psy8242 1 IDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELD-EPDAH---------VLKP----------- 59 (248)
Q Consensus 1 ~D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~-~~~~~---------~~~~----------- 59 (248)
+|+++||+|+++|++|+|.+|++||++|+.+|+||++|||+||+|||||+ +++++ .+.+
T Consensus 146 edv~~G~~ll~~G~~l~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~ 225 (396)
T 1wu2_A 146 EDVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFG 225 (396)
T ss_dssp SSBCTTCEEECTTCBCCHHHHHHHHHTTCSEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTC
T ss_pred cEEcCCCEeecCCcEEcHHHHHHHHhCCCceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCC
Confidence 59999999999999999999999999999999999999999999999999 87651 1111
Q ss_pred -----ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEeCCEEEEE
Q psy8242 60 -----GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFC 134 (248)
Q Consensus 60 -----~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~~~~~v~~ 134 (248)
++++||++.|+++|+++++++|+||||||+|+|++|+ ++ ++| +++||+++|+||||+++| ++||+
T Consensus 226 ~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~g~~D~----l~-~~G-~i~f~~va~~PG~p~~~g----~~v~~ 295 (396)
T 1wu2_A 226 EPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGDKDY----AH-KFV-NLLFHGTTIKPGRPFGYG----EKVFI 295 (396)
T ss_dssp EEEEEEEECSCHHHHTTHHHHHHHCSEEEECC--------CC----ST-TTC-CCSEESBSEESCTTCEEE----TTEEE
T ss_pred EEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCChhhH----Hh-hcC-CEEEeeecccCCCceEcc----CeEEE
Confidence 7899999999999999998999999999999999999 67 788 999999999999999999 89999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEeccccCCCCCCceEEEEEEEEeCCCceEEEEEcCCCCchhchh
Q psy8242 135 LPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLS 214 (248)
Q Consensus 135 LPG~P~aa~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~~~~~a~~~~~~~s~~l~~ 214 (248)
|||||.|++++|++|+.|+|++|+|.... ++.++|+|+++++++++|++|+|+++. ++ ++.|.+.|+|+++++
T Consensus 296 LPG~P~sa~~~~~~~v~P~L~~l~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l~---~g---~~~p~~~~~S~~l~s 368 (396)
T 1wu2_A 296 MSGYPVSVFAQFNLFVKHALAKMVGAQNY-EVKVKAILQDDIPSQLGRYEFIKIYYE---NG---IARVIKKKGSGILSS 368 (396)
T ss_dssp CCSSHHHHHHHHHHTHHHHHHHHHTCSSC-SCEEEEEESSCEECCTTCEEEEEEEEE---TT---EEEECCCCSSCCTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEEE---CC---EEEECCCCCcHHHHH
Confidence 99999999999999999999999997654 568999999999999999999999985 33 588998899999999
Q ss_pred cccCcEEEEEeCCCCCcCcCCCCEEEEEEc
Q psy8242 215 CKSCNGFAILPKATTKKTLEKNSLVNVILT 244 (248)
Q Consensus 215 l~~an~li~ip~~~~~~~~~~G~~V~v~ll 244 (248)
|++||||+++|++. +.+++|+.|+|++|
T Consensus 369 l~~An~li~ip~~~--~~~~~G~~V~v~~~ 396 (396)
T 1wu2_A 369 LLASNAYLEIPEDS--EGYRRGEEVWITLY 396 (396)
T ss_dssp HHSCCEEEEECTTC--CEECTTCEEEEEEC
T ss_pred HHhCCEEEEECCCC--CcCCCCCEEEEEEC
Confidence 99999999999997 78999999999986
No 5
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=100.00 E-value=7.5e-34 Score=238.28 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=107.7
Q ss_pred HHHHHHHhCCCCeEEeecCCeEEEEecCCcccCCCCCCCCC----------------ccccCCHHHHHHHHHHhc-CCCc
Q psy8242 19 PELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP----------------GICRDDPDLLLQCLKSNL-ASCD 81 (248)
Q Consensus 19 ~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~~~~~~~~----------------~~v~Dd~~~i~~~l~~a~-~~~D 81 (248)
.++|.|++.+.++ +++++|||+||+||||++....+.+.+ ++++||++.|+++|++++ +++|
T Consensus 13 ~~~g~~~~~~~~~-~~~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~D 91 (185)
T 3rfq_A 13 SDLGYSVAPMEQG-AELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVD 91 (185)
T ss_dssp -----------------CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCS
T ss_pred hhhhhhhcccccc-cCCCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCC
Confidence 5789999999999 999999999999999998543323333 689999999999999997 6899
Q ss_pred EEEEcCCCCCCCCchHHHHHHHhc------CCceeeeeeeeecCCcE------EEEEeCCEEEEEcCCChHHHHHHHHHH
Q psy8242 82 VIISTGSVSMGDKDYLKDILVTDL------GASIHFGRVNMKPGKPT------TFATLGNKLIFCLPGNPVSAMVTCHLF 149 (248)
Q Consensus 82 vvittGG~s~g~~D~~~~~l~~~~------g~~~~f~~v~~~PG~p~------~~g~~~~~~v~~LPG~P~aa~~~~~~~ 149 (248)
+||||||+|+|++|+|+++++ .+ |.+.+||+++|+||+|+ ++|..++++||+|||||.|++++|+.
T Consensus 92 lVIttGGts~g~~D~t~eal~-~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~- 169 (185)
T 3rfq_A 92 LVVSVGGTGVTPRDVTPESTR-EILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMAT- 169 (185)
T ss_dssp EEEEESCCSSSTTCCHHHHHH-TTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHH-
T ss_pred EEEECCCCCCCCcccHHHHHH-HHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHH-
Confidence 999999999999999999999 66 44568999999999998 58999999999999999999999986
Q ss_pred HHHHHHHhcC
Q psy8242 150 VLPALKALAG 159 (248)
Q Consensus 150 v~P~l~~l~G 159 (248)
+.|+|+++..
T Consensus 170 l~P~L~~~~~ 179 (185)
T 3rfq_A 170 LNPLAAHIIG 179 (185)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5999988764
No 6
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=99.98 E-value=8.7e-34 Score=238.91 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=110.4
Q ss_pred HHhCCCCeEEeecCCeEEEEecCCcccCCCC-CC--------------CCC-----ccccCCHHHHHHHHHHhcC--CCc
Q psy8242 24 LASVGVTSITVYKKPIIHILSTGNELDEPDA-HV--------------LKP-----GICRDDPDLLLQCLKSNLA--SCD 81 (248)
Q Consensus 24 Las~Gi~~V~V~~~prV~iistG~El~~~~~-~~--------------~~~-----~~v~Dd~~~i~~~l~~a~~--~~D 81 (248)
+|++|+.+|+||++|||+||+||||++.... +. .+- ++++||++.|+++|+++++ ++|
T Consensus 1 ~a~~g~~~v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~D 80 (189)
T 1jlj_A 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELN 80 (189)
T ss_dssp ------------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCS
T ss_pred CCcCCcccccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCC
Confidence 6899999999999999999999999987553 21 111 6899999999999999986 799
Q ss_pred EEEEcCCCCCCCCchHHHHHHHhcCC--------ceeeeeeeeecCCcE---EEEEeCCEEEEEcCCChHHHHHHHHHHH
Q psy8242 82 VIISTGSVSMGDKDYLKDILVTDLGA--------SIHFGRVNMKPGKPT---TFATLGNKLIFCLPGNPVSAMVTCHLFV 150 (248)
Q Consensus 82 vvittGG~s~g~~D~~~~~l~~~~g~--------~~~f~~v~~~PG~p~---~~g~~~~~~v~~LPG~P~aa~~~~~~~v 150 (248)
+||||||+|+|++|+|+++++ +++. .+.|++++|+||+|+ ++|..++++||+|||||.|++.+|+ ++
T Consensus 81 lVIttGGtg~g~~D~t~eal~-~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~G~~~~~~v~~LPG~P~s~~~~~~-~v 158 (189)
T 1jlj_A 81 LILTTGGTGFAPRDVTPEATK-EVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQ-FI 158 (189)
T ss_dssp EEEEESCCSSSTTCCHHHHHH-HHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHH-HH
T ss_pred EEEEcCCCCCCCcccHHHHHH-HHhccccccchhhheecccccCCCCccccceEEEECCeEEEECCCCHHHHHHHHH-HH
Confidence 999999999999999999999 6652 577899999999998 8999999999999999999999999 99
Q ss_pred HHHHHHhcCCC
Q psy8242 151 LPALKALAGSS 161 (248)
Q Consensus 151 ~P~l~~l~G~~ 161 (248)
.|+|+++.+..
T Consensus 159 ~P~L~~~~~~~ 169 (189)
T 1jlj_A 159 LPALPHAIDLL 169 (189)
T ss_dssp GGGHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999988753
No 7
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=99.97 E-value=2e-32 Score=228.58 Aligned_cols=127 Identities=21% Similarity=0.315 Sum_probs=110.7
Q ss_pred EEeecCCeEEEEecCCccc----CCCC--CCCCC----------------ccccCCHHHHHHHHHHhcCC--CcEEEEcC
Q psy8242 32 ITVYKKPIIHILSTGNELD----EPDA--HVLKP----------------GICRDDPDLLLQCLKSNLAS--CDVIISTG 87 (248)
Q Consensus 32 V~V~~~prV~iistG~El~----~~~~--~~~~~----------------~~v~Dd~~~i~~~l~~a~~~--~DvvittG 87 (248)
-.++++|||+||+||||++ .+|+ +.+.+ ++++||++.|+++|++++++ +|+|||||
T Consensus 10 ~~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4689999999999999998 4232 22222 68999999999999999976 99999999
Q ss_pred CCCCCCCchHHHHHHHhc------CCceeeeeeeeec---CCc-----EEEEEeCCEEEEEcCCChHHHHHHHHHHHHHH
Q psy8242 88 SVSMGDKDYLKDILVTDL------GASIHFGRVNMKP---GKP-----TTFATLGNKLIFCLPGNPVSAMVTCHLFVLPA 153 (248)
Q Consensus 88 G~s~g~~D~~~~~l~~~~------g~~~~f~~v~~~P---G~p-----~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~ 153 (248)
|+|+|++|+++++++ .+ |...+||+++|+| |+| +.+|..++++||+|||||.||+++|+.|+.|+
T Consensus 90 G~s~g~~D~t~eal~-~~~~~~l~G~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~ 168 (178)
T 2pjk_A 90 GTGYSPTDITVETIR-KLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPE 168 (178)
T ss_dssp CCSSSTTCCHHHHHG-GGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcchHHHHH-HHhcccCcchHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHH
Confidence 999999999999999 66 3345799999999 999 89999999999999999999999999999999
Q ss_pred HHHhcC
Q psy8242 154 LKALAG 159 (248)
Q Consensus 154 l~~l~G 159 (248)
|+++++
T Consensus 169 l~~~~~ 174 (178)
T 2pjk_A 169 VGHLVY 174 (178)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 8
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.97 E-value=1.2e-31 Score=221.88 Aligned_cols=127 Identities=17% Similarity=0.307 Sum_probs=107.3
Q ss_pred CeEEeecCCeEEEEecCCcccCCCC--CCCCC----------------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCC
Q psy8242 30 TSITVYKKPIIHILSTGNELDEPDA--HVLKP----------------GICRDDPDLLLQCLKSNLA--SCDVIISTGSV 89 (248)
Q Consensus 30 ~~V~V~~~prV~iistG~El~~~~~--~~~~~----------------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~ 89 (248)
.+++||++|||+||+||||+ ++ +.+.+ ++++||++.|+++|+++++ ++|+||||||+
T Consensus 6 ~~~~v~~~~rv~Ii~tGdEl---g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 6 HKKQAPKEVRCKIVTISDTR---TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp ------CCCEEEEEEECSSC---CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred cccccccCCEEEEEEEcCcc---CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34689999999999999999 32 23322 6899999999999999998 89999999999
Q ss_pred CCCCCchHHHHHHHhcC------Cceeeeeeee--ecCCcEEE-----EEeCCEEEEEcCCChHHHHHHHHHHHHHHHHH
Q psy8242 90 SMGDKDYLKDILVTDLG------ASIHFGRVNM--KPGKPTTF-----ATLGNKLIFCLPGNPVSAMVTCHLFVLPALKA 156 (248)
Q Consensus 90 s~g~~D~~~~~l~~~~g------~~~~f~~v~~--~PG~p~~~-----g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~ 156 (248)
|+|++|+|+++++ +++ .+.+||+++| +||+|+++ |..++++||+|||||.++..+|+.++.|+|++
T Consensus 83 g~g~~D~t~ea~~-~~~~~~l~g~~~~~~~~~~~~~pG~~~~~~r~~aG~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~ 161 (169)
T 1y5e_A 83 GITKRDVTIEAVS-ALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPELGH 161 (169)
T ss_dssp SSSTTCCHHHHHH-TTCSEECHHHHHHHHHHHHHHSSGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHHH
T ss_pred CCCCCCCcHHHHH-HHcCCCCCChHHHHhhhhcccCCCcceecccceeEEECCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 553 2357899999 99999754 77899999999999999999999999999999
Q ss_pred hcCC
Q psy8242 157 LAGS 160 (248)
Q Consensus 157 l~G~ 160 (248)
++|.
T Consensus 162 ~~~~ 165 (169)
T 1y5e_A 162 ITFE 165 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 9
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=99.96 E-value=2.5e-30 Score=213.13 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=102.5
Q ss_pred ecCCeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCch
Q psy8242 35 YKKPIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDY 96 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~ 96 (248)
+++|||+||+||||++.... +.+.+ ++++|| +.|+++|+++++ ++|+||||||+|+|++|+
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~ 83 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDS 83 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCC
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCcc
Confidence 57899999999999985443 33333 689999 999999999985 899999999999999999
Q ss_pred HHHHHHHhc------CCceeeeeeeeecCCcE-----EEEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhcC
Q psy8242 97 LKDILVTDL------GASIHFGRVNMKPGKPT-----TFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAG 159 (248)
Q Consensus 97 ~~~~l~~~~------g~~~~f~~v~~~PG~p~-----~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G 159 (248)
|+++++ ++ |....||+++++||++. ++|..++++||+|||||.||+++|+ |+.|+|+++..
T Consensus 84 t~eal~-~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~-~v~P~l~~~~~ 155 (164)
T 3pzy_A 84 TPDQTV-AVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLG-VLAGVLDHALD 155 (164)
T ss_dssp HHHHHH-TTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHH-HHHTTHHHHHH
T ss_pred HHHHHH-HHhcccCccHHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 999999 66 33457899999988543 5789999999999999999999999 99999987753
No 10
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=99.96 E-value=7.3e-30 Score=210.79 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=107.4
Q ss_pred ecCCeEEEEecCCcccCCCC--CC-----------C-----CC-----ccccCCHHHHHHHHHHhc--CCCcEEEEcCCC
Q psy8242 35 YKKPIIHILSTGNELDEPDA--HV-----------L-----KP-----GICRDDPDLLLQCLKSNL--ASCDVIISTGSV 89 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~--~~-----------~-----~~-----~~v~Dd~~~i~~~l~~a~--~~~DvvittGG~ 89 (248)
|++|||+||+||||+ .+++ +. . +- ++++||++.|+++|++++ +++|+||||||+
T Consensus 3 ~~~~rv~IistGde~-~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 3 GPEYKVAILTVSDTV-SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp CCSEEEEEEEECHHH-HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCcEEEEEEECCcc-cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 688999999999998 4443 11 1 22 689999999999999997 379999999999
Q ss_pred CCCCCchHHHHHHHhc------CC--ceeeeeeeeecCCcE---EEEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhc
Q psy8242 90 SMGDKDYLKDILVTDL------GA--SIHFGRVNMKPGKPT---TFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 90 s~g~~D~~~~~l~~~~------g~--~~~f~~v~~~PG~p~---~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~ 158 (248)
|+|++|+|+++++ ++ |. .++||+++++||+++ ++|..++++||+|||||.|++++|+.|+ |+|+++.
T Consensus 82 g~g~~D~t~~a~~-~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~~~~v~~LPG~P~s~~~~~~~~~-P~L~~~~ 159 (167)
T 1uuy_A 82 GFTPRDVTPEATK-KVIERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEALL-PALKHAL 159 (167)
T ss_dssp SSSTTCCHHHHHH-HHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSTTHHHHHHHHHH-HHHHHHH
T ss_pred CCCCCCchHHHHH-HHhcCCCCcHHHHHHhcccccCCCCcccceeEEEECCEEEEECCCCHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999 66 53 378999999999984 8999999999999999999999999997 9999887
Q ss_pred CC
Q psy8242 159 GS 160 (248)
Q Consensus 159 G~ 160 (248)
+.
T Consensus 160 ~~ 161 (167)
T 1uuy_A 160 KQ 161 (167)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.95 E-value=1.3e-29 Score=210.27 Aligned_cols=124 Identities=20% Similarity=0.309 Sum_probs=108.4
Q ss_pred ecCCeEEEEecCCcccCCCCCCCCC----------------ccccCCHHHHHHHHHHhcCC--CcEEEEcCCCCCCCCch
Q psy8242 35 YKKPIIHILSTGNELDEPDAHVLKP----------------GICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDY 96 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~~~~~----------------~~v~Dd~~~i~~~l~~a~~~--~DvvittGG~s~g~~D~ 96 (248)
|++|||+||+||||+-.. .+.+.+ ++++||++.|+++|++++++ +|+||||||+|+|++|+
T Consensus 8 ~~~~~v~Ii~tGdE~g~i-~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~ 86 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEE-DDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQ 86 (172)
T ss_dssp CCCCEEEEEEECSSCCGG-GCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCC
T ss_pred CCCCEEEEEEEeCCCCcc-cCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCC
Confidence 789999999999995211 123322 68999999999999999874 99999999999999999
Q ss_pred HHHHHHHhc------CCceeeeeeeeec-CCcEEE-----EEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhcCC
Q psy8242 97 LKDILVTDL------GASIHFGRVNMKP-GKPTTF-----ATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGS 160 (248)
Q Consensus 97 ~~~~l~~~~------g~~~~f~~v~~~P-G~p~~~-----g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G~ 160 (248)
|+++++ ++ |.+.+||+++++| |+|+.+ |..++++||+|||||.++..+|+.++.|+|++++|.
T Consensus 87 t~ea~~-~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~~~~~ 161 (172)
T 1mkz_A 87 APEALL-PLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDARTRP 161 (172)
T ss_dssp HHHHHG-GGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTTCSS
T ss_pred HHHHHH-HHhcccCCccHHHHHHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHHhhhccc
Confidence 999999 66 6678899999999 999874 558899999999999999999999999999988874
No 12
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=99.95 E-value=1.5e-28 Score=202.41 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=105.9
Q ss_pred CCeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCCchH
Q psy8242 37 KPIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDKDYL 97 (248)
Q Consensus 37 ~prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~D~~ 97 (248)
+|||+||+||||+..... +.+.+ ++++||++.|+++|+++++ ++|+||||||+|+|++|+|
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t 80 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRT 80 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCH
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCh
Confidence 379999999999965443 33322 6899999999999999987 7999999999999999999
Q ss_pred HHHHHHhcCCc--------eeeeeeeeecCCcE---EEEEeCCEEEEEcCCChHHHHHHHHHHHHHHHHHhcCC
Q psy8242 98 KDILVTDLGAS--------IHFGRVNMKPGKPT---TFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGS 160 (248)
Q Consensus 98 ~~~l~~~~g~~--------~~f~~v~~~PG~p~---~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G~ 160 (248)
+++++ +++.+ +.|++++++||+|+ .+|..++++||+|||||.++..+|+. +.|+|+++++.
T Consensus 81 ~ea~~-~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~~~~~~v~~LPG~P~~~~~~~~~-v~p~l~~~~~~ 152 (164)
T 2is8_A 81 PEATR-ELLDREVPGLAELMRLVGLRKTPMAALSRGVAGVRGRTLILNLPGSPKGARESLEA-VLPVLPHALSL 152 (164)
T ss_dssp HHHHH-TTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHH-HGGGHHHHHHH
T ss_pred HHHHH-HHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEEECCeEEEECCCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999 66433 34789999999999 77888999999999999999999998 89999988764
No 13
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.94 E-value=1.1e-27 Score=199.88 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=108.0
Q ss_pred cCCeEEEEecCCcccCCCC-CCC--------C---C-------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCC
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVL--------K---P-------GICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDK 94 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~--------~---~-------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~ 94 (248)
++|||+||+||||+..... +.+ . . ++++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~ 83 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPR 83 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 6899999999999875443 111 1 1 6899999999999999987 7999999999999999
Q ss_pred chHHHHHHHhcCC------ceeeeeeeeecCCcE------EEEEeCCEEEEEcCCChHHHHHHHHHH--HHHHHHHhcCC
Q psy8242 95 DYLKDILVTDLGA------SIHFGRVNMKPGKPT------TFATLGNKLIFCLPGNPVSAMVTCHLF--VLPALKALAGS 160 (248)
Q Consensus 95 D~~~~~l~~~~g~------~~~f~~v~~~PG~p~------~~g~~~~~~v~~LPG~P~aa~~~~~~~--v~P~l~~l~G~ 160 (248)
|+|+++++ +++. +..||+++++| +|+ ++|..++++||+|||||.++..+|+.+ +.|.|.+++|.
T Consensus 84 D~t~ea~~-~~~~~~l~g~~~~~~~v~~~~-~p~~~lsrg~ag~~~~~~v~~LPG~P~~~~~~~~~~~~v~p~l~~~~~~ 161 (178)
T 2pbq_A 84 DVTPEATE-AVCEKMLPGFGELMRQVSLKQ-VPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDLIGG 161 (178)
T ss_dssp CCHHHHHH-HHCSEECHHHHHHHHHHHHTT-CGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHHTTC
T ss_pred CchHHHHH-HHhCCCCCChHHHHHHHhccc-CcccccccceeeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999 6653 47799999999 888 568899999999999999999999999 89999999986
Q ss_pred C
Q psy8242 161 S 161 (248)
Q Consensus 161 ~ 161 (248)
.
T Consensus 162 ~ 162 (178)
T 2pbq_A 162 A 162 (178)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=99.93 E-value=2.6e-27 Score=195.51 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCeEEEEecCCcccCCCC-C--------C----CCC--------ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCC
Q psy8242 37 KPIIHILSTGNELDEPDA-H--------V----LKP--------GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDK 94 (248)
Q Consensus 37 ~prV~iistG~El~~~~~-~--------~----~~~--------~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~ 94 (248)
.+||+||+||||+..... + . +.. ++++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 5 ~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~ 84 (167)
T 2g2c_A 5 HIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRAK 84 (167)
T ss_dssp EEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred ccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 379999999999975432 2 2 222 6899999999999999997 5999999999999999
Q ss_pred chHHHHHHHhc------CCceeeeeeeeecCCcEE------EEEeCC----EEEEEcCCChHHHHHHHHHHHHHHHHHhc
Q psy8242 95 DYLKDILVTDL------GASIHFGRVNMKPGKPTT------FATLGN----KLIFCLPGNPVSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 95 D~~~~~l~~~~------g~~~~f~~v~~~PG~p~~------~g~~~~----~~v~~LPG~P~aa~~~~~~~v~P~l~~l~ 158 (248)
|+|+++++ ++ |.+.+||+++++|+ |+. +|..++ ++||+|||||.++..+|+ ++.|+|++++
T Consensus 85 D~t~ea~~-~~~~~~l~g~~~~~~~~~~~~~-p~a~l~r~~aG~~~~~~~~~~v~~LPG~P~~~~~~~~-~v~P~L~~~~ 161 (167)
T 2g2c_A 85 NQTPEATA-SFIHTRCEGLEQQILIHGSTHT-HLAGLSRGIVGVTGRDDHAALIVNAPSSSGGITDTWA-VISPVIPNIF 161 (167)
T ss_dssp CCHHHHHH-TTCSEECHHHHHHHHHHC--------CCCCCCEEESCSSTTCCEEEEECSSHHHHHHHHH-HHGGGHHHHH
T ss_pred cChHHHHH-HHhCCcCccHHHHHHHhcCCcC-CceeeeccccceecCCCCCEEEEECCCCHHHHHHHHH-HHHHHHHHHH
Confidence 99999999 66 34567899999999 764 688888 999999999999999999 9999999886
Q ss_pred C
Q psy8242 159 G 159 (248)
Q Consensus 159 G 159 (248)
+
T Consensus 162 ~ 162 (167)
T 2g2c_A 162 E 162 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.91 E-value=3.5e-26 Score=193.22 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=98.9
Q ss_pred cCCeEEEEecCCcccCCCC-CCCCC------------------ccccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCC
Q psy8242 36 KKPIIHILSTGNELDEPDA-HVLKP------------------GICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDK 94 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~-~~~~~------------------~~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~ 94 (248)
+++||+||+||||+..... +.+++ .+++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~ 81 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARR 81 (195)
T ss_dssp CCEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT
T ss_pred CCCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 4789999999999985432 22222 5799999999999999987 7999999999999999
Q ss_pred chHHHHHHHhc------CCceeeeeeeeecCCcE-----EEEEeCCEEEEEcCCChHHHHHHHHHH-----------HHH
Q psy8242 95 DYLKDILVTDL------GASIHFGRVNMKPGKPT-----TFATLGNKLIFCLPGNPVSAMVTCHLF-----------VLP 152 (248)
Q Consensus 95 D~~~~~l~~~~------g~~~~f~~v~~~PG~p~-----~~g~~~~~~v~~LPG~P~aa~~~~~~~-----------v~P 152 (248)
|+|+++++ .+ |.+..|++++++|+.+. .+|..++++||+|||||.|+..+|+.| +.|
T Consensus 82 D~T~ea~~-~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~~~~v~~LPG~P~a~~~~~~~~~~~~~~~~~~~v~p 160 (195)
T 1di6_A 82 DVTPDATL-AVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFA 160 (195)
T ss_dssp CCHHHHHH-HTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHEEECTTSCEEEECGGG
T ss_pred ccHHHHHH-HHhcccCccHHHHHHHhcCCCCCcceeccceEEEECCEEEEECCCCHHHHHHHHHHHHhhcccchhhhHHH
Confidence 99999999 66 33467999999996542 258889999999999999999999998 888
Q ss_pred HHHHhc
Q psy8242 153 ALKALA 158 (248)
Q Consensus 153 ~l~~l~ 158 (248)
+|.++.
T Consensus 161 ~l~~~~ 166 (195)
T 1di6_A 161 SVPYCI 166 (195)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 876654
No 16
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.2e-24 Score=180.92 Aligned_cols=127 Identities=21% Similarity=0.294 Sum_probs=102.9
Q ss_pred EEeecCCeEEEEecCCcccC----CCC--CCCCC----------------ccccCCHHHHHHHHHHhc--CCCcEEEEcC
Q psy8242 32 ITVYKKPIIHILSTGNELDE----PDA--HVLKP----------------GICRDDPDLLLQCLKSNL--ASCDVIISTG 87 (248)
Q Consensus 32 V~V~~~prV~iistG~El~~----~~~--~~~~~----------------~~v~Dd~~~i~~~l~~a~--~~~DvvittG 87 (248)
-...+++||+||++|||..+ .++ |.+++ ++++||++.|+++++++. +++|+|||||
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 34567899999999997542 222 22333 689999999999998764 5799999999
Q ss_pred CCCCCCCchHHHHHHHhcCC------ceeeeeeeeecCCcE--------EEEEeCCEEEEEcCCChHHHHHHHHHHHHHH
Q psy8242 88 SVSMGDKDYLKDILVTDLGA------SIHFGRVNMKPGKPT--------TFATLGNKLIFCLPGNPVSAMVTCHLFVLPA 153 (248)
Q Consensus 88 G~s~g~~D~~~~~l~~~~g~------~~~f~~v~~~PG~p~--------~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~ 153 (248)
|+|+|++|+++++++ .+.. +..|++++++||++. ..|..++++||+|||||.++..+|+.|+.|+
T Consensus 90 G~g~~~~D~t~ea~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P~ 168 (178)
T 3iwt_A 90 GTGYSPTDITVETIR-KLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPE 168 (178)
T ss_dssp CCSSSTTCCHHHHHG-GGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHH
T ss_pred CcccCCCCchHHHHH-HhhhcccccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 5542 345788999999864 4578899999999999999999999999999
Q ss_pred HHHhcC
Q psy8242 154 LKALAG 159 (248)
Q Consensus 154 l~~l~G 159 (248)
|.++..
T Consensus 169 L~h~~~ 174 (178)
T 3iwt_A 169 VGHLVY 174 (178)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 17
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.74 E-value=4.1e-18 Score=140.98 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=89.0
Q ss_pred CCeEEEEecCCcccCCCC-CCCCC----------------ccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHH
Q psy8242 37 KPIIHILSTGNELDEPDA-HVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKD 99 (248)
Q Consensus 37 ~prV~iistG~El~~~~~-~~~~~----------------~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~ 99 (248)
++||+||+|||||+.... +.+.+ .+++||++.|+++|+++++++|+||||||+|+|++|+|++
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~e 82 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVE 82 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHH
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHH
Confidence 489999999999998543 23222 6899999999999999998899999999999999999999
Q ss_pred HHHHhcCCceeeee---------------------eeeecCCcEE-----------EEEeCCEEEEEcCCChHHHHHHHH
Q psy8242 100 ILVTDLGASIHFGR---------------------VNMKPGKPTT-----------FATLGNKLIFCLPGNPVSAMVTCH 147 (248)
Q Consensus 100 ~l~~~~g~~~~f~~---------------------v~~~PG~p~~-----------~g~~~~~~v~~LPG~P~aa~~~~~ 147 (248)
++++.+|.++.+|. .++-|-.... .-..+++.++.|||.|.....+|+
T Consensus 83 a~a~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~g~apG~~~~~~~~~v~~lPGvP~e~~~m~~ 162 (172)
T 3kbq_A 83 GFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLK 162 (172)
T ss_dssp HHHHHHTCCCEECHHHHHHHHHHHC---CCHHHHGGGEECTTEEEECCSSSSSCEEEEEETTEEEEEECSSHHHHHHHHH
T ss_pred HHHHHcCCCeeeCHHHHHHHHHHHcCCCCChHHHhhccCCCCCEECcCCCCcCCeEEEEECCeEEEEeCCCHHHHHHHHH
Confidence 99867787776652 2233332221 113468899999999999988887
Q ss_pred HHH
Q psy8242 148 LFV 150 (248)
Q Consensus 148 ~~v 150 (248)
.+.
T Consensus 163 ~~~ 165 (172)
T 3kbq_A 163 AME 165 (172)
T ss_dssp HTH
T ss_pred HHH
Confidence 753
No 18
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=67.75 E-value=33 Score=30.99 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCC--CCCchHHHHHHHhcCCceeeeeeeeecCCcEE------EEEeCCEEEEEcCCCh-
Q psy8242 69 LLQCLKSNLASCDVIISTGSVSM--GDKDYLKDILVTDLGASIHFGRVNMKPGKPTT------FATLGNKLIFCLPGNP- 139 (248)
Q Consensus 69 i~~~l~~a~~~~DvvittGG~s~--g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~------~g~~~~~~v~~LPG~P- 139 (248)
-.+.++++++++|+||+|=..-. .+.=++.+.++ .+...-++-.+++.+|..+- .-..++..++|.+.-|
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~-~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~nlP~ 333 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAAT-GMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPLNLPA 333 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHH-TSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCSCTGG
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHh-cCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeCCCch
Confidence 34567778889999998732211 12235678887 66444455556666665421 2345788888877766
Q ss_pred ---HHHHHHHHHHHHHHHHHhc
Q psy8242 140 ---VSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 140 ---~aa~~~~~~~v~P~l~~l~ 158 (248)
..|-..|..-+.|+|..+.
T Consensus 334 ~vp~tAS~~~s~~l~~~l~~~~ 355 (381)
T 3p2y_A 334 TMPEHASELYAKNVTALLDLLL 355 (381)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHE
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556678887765
No 19
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=66.23 E-value=7.1 Score=34.21 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=31.1
Q ss_pred CccCCCEEecCCceeCHHHHHHHHhCCCCeEEee
Q psy8242 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVY 35 (248)
Q Consensus 2 D~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~ 35 (248)
|-..||+++.+|+.|+...+..|...|+.++.+.
T Consensus 156 d~~tGEvl~~a~~~it~~~l~~l~~~gi~~i~~l 189 (296)
T 3lti_A 156 DESTGELICAANMELSLDLLAXLSQSGHKRIETL 189 (296)
T ss_dssp CTTTCCEEECTTCBCCHHHHHHHHHTTCCEEEEE
T ss_pred cccccceeeccccccCHHHHHHHHhcCcceEEEE
Confidence 4578999999999999999999999999998864
No 20
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=61.94 E-value=10 Score=30.42 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=43.5
Q ss_pred ecCCeEEEEecCCcccCCCCCC------CCC--ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHHHhc
Q psy8242 35 YKKPIIHILSTGNELDEPDAHV------LKP--GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTDL 105 (248)
Q Consensus 35 ~~~prV~iistG~El~~~~~~~------~~~--~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~~~~ 105 (248)
...|||+++...=|.-...... ... .+...+.+.+++.+++..+ ++|+|++.+|+ .|+..+.|. +.
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I----~d~a~~~l~-k~ 99 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGI----SDLAQHYLM-RA 99 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCB----CHHHHHHHH-HT
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcc----cHHHHHHHH-HC
Confidence 3679999998876665443200 000 2334445566777776654 79999999988 499999998 66
Q ss_pred C
Q psy8242 106 G 106 (248)
Q Consensus 106 g 106 (248)
|
T Consensus 100 g 100 (178)
T 1gml_A 100 N 100 (178)
T ss_dssp T
T ss_pred C
Confidence 6
No 21
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=54.13 E-value=7.6 Score=30.90 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCchHHHHHHHhcCCce
Q psy8242 63 RDDPDLLLQCLKSNLAS---CDVIISTGSVSMGDKDYLKDILVTDLGASI 109 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~---~DvvittGG~s~g~~D~~~~~l~~~~g~~~ 109 (248)
+||..++++.|.+-... -|+|++-||- |.-..+.++|+ ++|..+
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGk--gQl~aA~~vl~-elg~~i 106 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGI--GQVNAAIEALK-EIGKDC 106 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCH--HHHHHHHHHHH-HTTCCC
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCH--HHHHHHHHHHH-HcCCCc
Confidence 49999999999987654 6999999987 56677788888 788543
No 22
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=50.47 E-value=11 Score=33.93 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCC---cEEEEEeCCEEEEEcCCChHHHH
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK---PTTFATLGNKLIFCLPGNPVSAM 143 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~---p~~~g~~~~~~v~~LPG~P~aa~ 143 (248)
+.|+..+++ .-.|+||||||. +..+.++ .+|. ++.+---..+. ...+-++++..| |...+
T Consensus 114 ~iI~~Li~~--~~VDvIVTTggg------iehD~ik-~lg~--~y~G~f~~dd~~Lr~~ginRIgn~~i------p~e~y 176 (369)
T 1rlz_A 114 ETIRYLVQH--NMVDVLVTTAGG------VEEDLIK-CLAP--TYLGEFSLRGKELRENGINRIGNLLV------PNENY 176 (369)
T ss_dssp HHHHHHHHT--TCCSEEEECHHH------HHHHHHT-TTSC--CEECCTTCCHHHHHHTTEEEETTEEE------ETHHH
T ss_pred HHHHHHHHc--CCeeEEEccCCc------hHHHHHH-Hhcc--ceecCCCCChHHHHHcCCCcccceee------ccHHH
Confidence 445555543 248999999987 4556666 6763 33321111121 123557778775 66899
Q ss_pred HHHHHHHHHHHHHhc
Q psy8242 144 VTCHLFVLPALKALA 158 (248)
Q Consensus 144 ~~~~~~v~P~l~~l~ 158 (248)
.-|+.++.|++.+|.
T Consensus 177 ~~~E~~i~~i~~~~~ 191 (369)
T 1rlz_A 177 CKFEDWLMPILDQMV 191 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 23
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=49.52 E-value=48 Score=30.16 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCcEEEEcCCCCC--CCCchHHHHHHHhcCCceeeeeeeeecCCcE------EEEEeCCEEEEEcCCCh--
Q psy8242 70 LQCLKSNLASCDVIISTGSVSM--GDKDYLKDILVTDLGASIHFGRVNMKPGKPT------TFATLGNKLIFCLPGNP-- 139 (248)
Q Consensus 70 ~~~l~~a~~~~DvvittGG~s~--g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~------~~g~~~~~~v~~LPG~P-- 139 (248)
.+.++++++++|+||+|=..-. .+.=++++.++ .+...-++-.+++.+|..+ -.-..++..++|.+.-|
T Consensus 266 ~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~-~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~nlP~~ 344 (405)
T 4dio_A 266 AALVAEHIAKQDIVITTALIPGRPAPRLVTREMLD-SMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLNVAGR 344 (405)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHT-TSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSSGGGG
T ss_pred HhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHh-cCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCCCCcc
Confidence 4567777889999998743221 22335678887 6644444445665555432 11235788888866655
Q ss_pred --HHHHHHHHHHHHHHHHHhc
Q psy8242 140 --VSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 140 --~aa~~~~~~~v~P~l~~l~ 158 (248)
..+-..|..-+.|+|..+.
T Consensus 345 vp~tAS~~ls~~~~~~l~~l~ 365 (405)
T 4dio_A 345 IAASASLLYAKNLVTFLETMV 365 (405)
T ss_dssp GHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555678777664
No 24
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=48.16 E-value=8.4 Score=33.16 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcC---CCcEEEEcCCCCCCCC------------chHHHHHHHhcCCceee--------eeee-eecCCcE
Q psy8242 67 DLLLQCLKSNLA---SCDVIISTGSVSMGDK------------DYLKDILVTDLGASIHF--------GRVN-MKPGKPT 122 (248)
Q Consensus 67 ~~i~~~l~~a~~---~~DvvittGG~s~g~~------------D~~~~~l~~~~g~~~~f--------~~v~-~~PG~p~ 122 (248)
+..++.++++++ + |++|.+|.+..... +.++++.. .. +.++ -+|. .+|.-..
T Consensus 54 ~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~g~~~~~~g~~~~~~~~~~~~-~~--k~VIA~GsCA~~GGi~a~~~n~~~ 129 (264)
T 1yqw_A 54 EAAEAALHQALEGKDG-YYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAA-KA--KGIICIGTCSAYGGVQKAKPNPSQ 129 (264)
T ss_dssp HHHHHHHHHHHTCTTC-EEEEEESBEECGGGGTTBEETTEEHHHHHHHHHH-TC--SCEEEESHHHHHCCGGGSTTCTTC
T ss_pred hhHHHHHHHHhccCCC-eEEEEeCCcccCCCccceeeCChHHHHHHHHHhc-CC--CEEEEeccccccCCccCCCCCCcc
Confidence 444555565553 5 99999999988754 55555554 22 2221 2332 2232222
Q ss_pred EEEEeC--CEEEEEcCCChHHHHHHHHHHHH
Q psy8242 123 TFATLG--NKLIFCLPGNPVSAMVTCHLFVL 151 (248)
Q Consensus 123 ~~g~~~--~~~v~~LPG~P~aa~~~~~~~v~ 151 (248)
..+.-. .+||+.+||-|......+..++.
T Consensus 130 ~~gv~~v~~~PVi~IPGCPP~Pe~i~~~l~~ 160 (264)
T 1yqw_A 130 AKGVSEALGVKTINIPGCPPNPINFVGAVVH 160 (264)
T ss_dssp EECHHHHHTSCCEEECSSSCCHHHHHHHHHH
T ss_pred cccccccCCCCEEEeeCCCCCHHHHHHHHHH
Confidence 222211 57899999999988766665543
No 25
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1
Probab=46.45 E-value=0.63 Score=44.82 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEeecCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhc---CCC-cEEEEcCCCCCCCC---------chHH
Q psy8242 32 ITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNL---ASC-DVIISTGSVSMGDK---------DYLK 98 (248)
Q Consensus 32 V~V~~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~---~~~-DvvittGG~s~g~~---------D~~~ 98 (248)
+.-++||.|+|.+|.+|+.+... ...+=.+.+++.++++= .++ .++-.+-|.+.|.. |++.
T Consensus 80 ~~~~~kP~IgI~ns~~d~~p~h~------hl~~l~~~Vk~gv~~aGg~p~efg~~pav~DGit~G~~GM~ySL~SRelIA 153 (628)
T 2gp4_A 80 LRQLTKANIGIITAFNDMLSAHQ------PYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIA 153 (628)
T ss_dssp ------------------------------------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHH
T ss_pred HhccCCCEEEEEeccccCcccch------hHHHHHHHHHHHHHHcCCcceecCCCCcCCCccccCCcccccchhhHHHHH
Confidence 56778999999999999987654 22222222233332220 112 34555555555543 3333
Q ss_pred HHHHHhcCCceeeeeee-------eecCCcEEEEEeCCEEEEEcCCChHHH
Q psy8242 99 DILVTDLGASIHFGRVN-------MKPGKPTTFATLGNKLIFCLPGNPVSA 142 (248)
Q Consensus 99 ~~l~~~~g~~~~f~~v~-------~~PG~p~~~g~~~~~~v~~LPG~P~aa 142 (248)
..++..+. .-.|.++- +-||--+..+++++.|.+.+||-|+..
T Consensus 154 dsiE~~~~-a~~~Dg~V~i~~CDK~~PG~LMaA~r~~niPaIfV~gGpM~~ 203 (628)
T 2gp4_A 154 MATAVGLS-HNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKS 203 (628)
T ss_dssp HHHHHHHT-TCCCSEEEEECCSTTTTHHHHHHHHTTTTSCEEECCCCC---
T ss_pred HHHHHHHh-CCCCCeEEEeccCCCccHHHHHHHHhcCCCCEEEEeeCCCCC
Confidence 33331111 11233332 334444444556678888888888543
No 26
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=45.09 E-value=12 Score=31.22 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCchHHHHHHHhcCCcee
Q psy8242 63 RDDPDLLLQCLKSNLAS---CDVIISTGSVSMGDKDYLKDILVTDLGASIH 110 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~---~DvvittGG~s~g~~D~~~~~l~~~~g~~~~ 110 (248)
+||..++++.|.+-... -|+|++=||- |.-....++|+ ++|..+-
T Consensus 65 ~DDya~m~Evl~RR~~r~~~PDLiliDGGk--gQl~~a~~vl~-~lg~~i~ 112 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKHPLPNLLFVDGGI--GQVNAAIEALK-EIGKDCP 112 (220)
T ss_dssp CCHHHHHHHHHHHHHTTSCCCSEEEESSSH--HHHHHHHHHHH-HTTCCCC
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCH--HHHHHHHHHHH-HcCCCCe
Confidence 49999999999987654 6999999976 56777888888 7885543
No 27
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.03 E-value=15 Score=30.00 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=35.4
Q ss_pred CCeEEEEecCCcccCCCC---------CCCCC--cccc---CCHHHHHHHHHHhcCCCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 37 KPIIHILSTGNELDEPDA---------HVLKP--GICR---DDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 37 ~prV~iistG~El~~~~~---------~~~~~--~~v~---Dd~~~i~~~l~~a~~~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
.+||++|+|+...-+..+ ..++- .++. .+++.+.+.|+ ++|.|+.+||-+ ...-+.|.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~----~ad~I~l~GG~~----~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR----KNDFIYVTGGNT----FFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH----HSSEEEECCSCH----HHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH----hCCEEEECCCCH----HHHHHHHH
Confidence 589999999876433221 01111 1232 46776666665 589999998654 24444455
Q ss_pred HhcC
Q psy8242 103 TDLG 106 (248)
Q Consensus 103 ~~~g 106 (248)
..|
T Consensus 99 -~~g 101 (206)
T 3l4e_A 99 -RTG 101 (206)
T ss_dssp -HHT
T ss_pred -HCC
Confidence 344
No 28
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=40.39 E-value=33 Score=30.39 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=36.9
Q ss_pred cCCeEEEEecCCcccCCCCCC-------CCC------------------------------ccccCCHHHHHHHHHHhc-
Q psy8242 36 KKPIIHILSTGNELDEPDAHV-------LKP------------------------------GICRDDPDLLLQCLKSNL- 77 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~~-------~~~------------------------------~~v~Dd~~~i~~~l~~a~- 77 (248)
.+|||.||+||--|.....+. .+. .+-+++...|.+.+++.+
T Consensus 7 ~~~~I~ii~TGGTIa~~~~~~~~~~gy~~~~~~~~~ll~~vp~l~~~~~i~~~~~~~idS~~m~~~~~~~la~~i~~~~~ 86 (334)
T 3nxk_A 7 AKSRIAILGTGGTIAGFIDSTIATTGYAAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFA 86 (334)
T ss_dssp -CCEEEEEEEECGGGCBCSCSSCCSSCBSSCSCHHHHTTTCTTHHHHSEEEEEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCchhcccccCCcCccCccCCCCCHHHHHHhCccccccceEEEEEecccCcccCCHHHHHHHHHHHHHHhh
Confidence 468999999998876543210 000 235566778888888877
Q ss_pred CCCcEEEEcCCC
Q psy8242 78 ASCDVIISTGSV 89 (248)
Q Consensus 78 ~~~DvvittGG~ 89 (248)
+++|=+|+|=|+
T Consensus 87 ~~~dGvVItHGT 98 (334)
T 3nxk_A 87 EGIDGVVITHGT 98 (334)
T ss_dssp TTCCEEEEECCS
T ss_pred cCCCeEEEECCC
Confidence 678878877776
No 29
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=39.59 E-value=54 Score=24.64 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC-CchHHHHHHHhcCCc
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD-KDYLKDILVTDLGAS 108 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~-~D~~~~~l~~~~g~~ 108 (248)
+++|.+++|||=-. .-+.+++-+.+-.-.+-+.|.|++... +..+.++++ +.|..
T Consensus 3 ~~~VLFVC~gN~cR----------------SpmAEai~~~~~~~~~~v~SAGt~~~~~~p~a~~~l~-~~Gid 58 (139)
T 1jl3_A 3 NKIIYFLCTGNSCR----------------SQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMK-EVGID 58 (139)
T ss_dssp CEEEEEEESSSSSH----------------HHHHHHHHHHHSCTTEEEEEEESSCCCCCHHHHHHHH-HTTCC
T ss_pred CCeEEEEcCCchHH----------------HHHHHHHHHHhCCCCEEEEcCcCCCCCCCHHHHHHHH-HcCCC
Confidence 45899999998332 445555544443456889999999754 455677777 66644
No 30
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=38.52 E-value=46 Score=25.68 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=37.6
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC--CchHHHHHHHhcCCc
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD--KDYLKDILVTDLGAS 108 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~--~D~~~~~l~~~~g~~ 108 (248)
..||.+++|||=-. .-+.++|-+.+..-++-|.|.|++.|. ...+.++++ +.|..
T Consensus 20 ~~~VLFVC~gN~cR----------------SpmAEal~~~~~~~~~~v~SAGt~~g~~~dp~a~~vl~-e~Gid 76 (148)
T 3rh0_A 20 MKSVLFVCVGNGGK----------------SQMAAALAQKYASDSVEIHSAGTKPAQGLNQLSVESIA-EVGAD 76 (148)
T ss_dssp CCEEEEEESSSSSH----------------HHHHHHHHHHHCCTTSEEEEEESSCCSSCCHHHHHHHH-HTTCC
T ss_pred CCEEEEECCCchhH----------------HHHHHHHHHHhcCCCEEEEecccCCCCCCCHHHHHHHH-HcCCC
Confidence 46899999998332 445555544443447889999998864 567788887 66643
No 31
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=36.49 E-value=65 Score=23.99 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC-CchHHHHHHHhcCCc
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD-KDYLKDILVTDLGAS 108 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~-~D~~~~~l~~~~g~~ 108 (248)
+++|.+++|||=-. .-+.+++-+.+-.-++-+.|.|++... +..+.++++ +.|..
T Consensus 3 ~~~VLFVC~gN~cR----------------SpmAEa~~~~~~~~~~~v~SAGt~~~~~~p~a~~~l~-~~Gid 58 (131)
T 1jf8_A 3 KKTIYFISTGNSAR----------------SQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMK-EVDID 58 (131)
T ss_dssp CEEEEEEESSSSSH----------------HHHHHHHHHHHSTTTEEEEEEESSCCCCCHHHHHHHH-HTTCC
T ss_pred CCEEEEEcCCcchH----------------HHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHH-HcCCC
Confidence 46899999998332 444555544443457889999999753 455677777 66644
No 32
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=34.22 E-value=20 Score=32.47 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred cccCCHHHHHHHHHHhcCCCcEEEEcCCCCCC----CCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 61 ICRDDPDLLLQCLKSNLASCDVIISTGSVSMG----DKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g----~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
...++.+.|.++|++.++.+|+|+.|.|.|-| .--++.+.++ +.| .+.-.|-.+|-+
T Consensus 93 aa~e~~~~i~~~l~~~~~~~d~vfi~ag~GGGTGtGa~pvia~~~k-e~~--~~~~~vvt~Pf~ 153 (389)
T 4ei7_A 93 AFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIEMLY-EHD--YNFGLLLTLPRD 153 (389)
T ss_dssp HHHHTHHHHHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHH-HTT--CCEEEEEEECCG
T ss_pred HHHHHHHHHHHHHHhhcCCccEEEEEecCCCCCccccHHHHHHHHH-HcC--CCEEEEEEeCCC
Confidence 57788999999999888899999877555444 4566666666 555 344556666755
No 33
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=33.53 E-value=80 Score=27.91 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHHHhcCCCcEEEEcCCC-CC-CCCchHHHHHHHhcCCceeeeeeeeecCC------cEEEEEeCCEEEEEcCCCh----
Q psy8242 72 CLKSNLASCDVIISTGSV-SM-GDKDYLKDILVTDLGASIHFGRVNMKPGK------PTTFATLGNKLIFCLPGNP---- 139 (248)
Q Consensus 72 ~l~~a~~~~DvvittGG~-s~-g~~D~~~~~l~~~~g~~~~f~~v~~~PG~------p~~~g~~~~~~v~~LPG~P---- 139 (248)
.+.+.+.++|+||.+-.. +. .+.=+..+.++ .+...-.+-.+++.+|. |+..-..++.-+++.+..|
T Consensus 250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~-~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~ 328 (384)
T 1l7d_A 250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVT-KMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVA 328 (384)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHT-TSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGH
T ss_pred HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHh-cCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhH
Confidence 356666789999977622 11 11223477777 55433344445554442 2223345677777755544
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy8242 140 VSAMVTCHLFVLPALKALA 158 (248)
Q Consensus 140 ~aa~~~~~~~v~P~l~~l~ 158 (248)
..+...+..-..|++..+.
T Consensus 329 ~~a~~l~~~~~~~~~~~~~ 347 (384)
T 1l7d_A 329 ADASPLFAKNLLNFLTPHV 347 (384)
T ss_dssp HHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4344455555667776664
No 34
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=32.17 E-value=22 Score=30.82 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=46.6
Q ss_pred HHHHHHHHHhc---CCCcEEEEcCCCCCCCC------------chHHHHHHHhcCCceee--------eeee-eecCCcE
Q psy8242 67 DLLLQCLKSNL---ASCDVIISTGSVSMGDK------------DYLKDILVTDLGASIHF--------GRVN-MKPGKPT 122 (248)
Q Consensus 67 ~~i~~~l~~a~---~~~DvvittGG~s~g~~------------D~~~~~l~~~~g~~~~f--------~~v~-~~PG~p~ 122 (248)
+..++.+++++ .++|++|.+|.+..... +.++++.. . .+.++ -+|. .+| .|+
T Consensus 60 ~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~g~~~~~~g~~~l~~~~~~~~-~--ak~VIA~GsCA~~GGi~a~~p-n~~ 135 (283)
T 3ayx_B 60 HAAEAILDEIKEKYKGNYILAVEGNPPLNQDGMSCIIGGRPFSEQLKRMAD-D--AKAIISWGSCASWGCVQAAKP-NPT 135 (283)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEESBCBCSGGGTTBEETTEEHHHHHHHHHH-T--EEEEEEEHHHHHTCTGGGSTT-CTT
T ss_pred hhHHHHHHHHhccCCCCeEEEEeCCCccCCCcceeeeCCcHHHHHHHHHcc-c--CCEEEEeeeccccCCCCCCCC-CCc
Confidence 33444454443 46899999999988774 55555554 2 22221 1232 222 222
Q ss_pred EE-E---EeC---CEEEEEcCCChHHHHHHHHHHHH
Q psy8242 123 TF-A---TLG---NKLIFCLPGNPVSAMVTCHLFVL 151 (248)
Q Consensus 123 ~~-g---~~~---~~~v~~LPG~P~aa~~~~~~~v~ 151 (248)
.. + .+. ++||+.+||-|......+..++.
T Consensus 136 ~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~ 171 (283)
T 3ayx_B 136 QATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITY 171 (283)
T ss_dssp CBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHH
T ss_pred cCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHH
Confidence 11 1 112 58899999999988776666553
No 35
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}
Probab=31.99 E-value=48 Score=27.34 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=37.1
Q ss_pred cCCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC--CchHHHHHHHhcCCc
Q psy8242 36 KKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD--KDYLKDILVTDLGAS 108 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~--~D~~~~~l~~~~g~~ 108 (248)
++++|.+++|||=-. .-+.+++-+.+..-++.+.|.|+++|. ...+.++++ +.|..
T Consensus 80 ~~~~VLFVCtgN~cR----------------SpmAEal~~~~~~~~~~v~SAGt~~g~~~dp~a~~vl~-e~Gid 137 (213)
T 3t38_A 80 PVPQVLFICVHNAGR----------------SQIASALLSHYAGSSVEVRSAGSLPASEIHPLVLEILS-ERGVN 137 (213)
T ss_dssp CCCEEEEEESSSSSH----------------HHHHHHHHHHHHGGGCEEEEEESSCCSSCCHHHHHHHH-HTTCC
T ss_pred CCCEEEEECCCchhH----------------HHHHHHHHHHhccCceEEEecccCCCCCCCHHHHHHHH-HcCCC
Confidence 378999999999332 333344333222335788999998764 677888888 67743
No 36
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=31.59 E-value=16 Score=31.38 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCCC------------chHHHHHHHhcCCceee--------eeee-eecCCcEEEE
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMGDK------------DYLKDILVTDLGASIHF--------GRVN-MKPGKPTTFA 125 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g~~------------D~~~~~l~~~~g~~~~f--------~~v~-~~PG~p~~~g 125 (248)
+..++.+++..+++||+|.+|.+..... +.++++.. + .+.++ -+|. ++|.-....+
T Consensus 54 ~~a~~~~~~~~~~~diliVeGsV~~~~~g~~~~~~~~~~~~~l~~~~~-~--~k~VIA~GsCA~~GGi~a~~~n~~~~~g 130 (264)
T 1yq9_A 54 HAVEEALHEAIKGDFVCVIEGGIPMGDGGYWGKVGGRNMYDICAEVAP-K--AKAVIAIGTCATYGGVQAAKPNPTGTVG 130 (264)
T ss_dssp HHHHHHHHHHTTSSEEEEEESBEECGGGSTTBEETTEEHHHHHHHHGG-G--SSEEEEEHHHHHHCCGGGSTTCTTCEEC
T ss_pred hhHHHHHhhhccCCeEEEEeCCcccCCCcceeecCcHHHHHHHHHHhc-c--CCEEEEeccccccCCCCCCCCCCccccC
Confidence 4445666666678999999999987752 34444433 2 22221 1332 2222111112
Q ss_pred E---eC--CEEEEEcCCChHHHHHHHHHHHH
Q psy8242 126 T---LG--NKLIFCLPGNPVSAMVTCHLFVL 151 (248)
Q Consensus 126 ~---~~--~~~v~~LPG~P~aa~~~~~~~v~ 151 (248)
. +. +++++.+||-|.......+.++.
T Consensus 131 v~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ 161 (264)
T 1yq9_A 131 VNEALGKLGVKAINIAGCPPNPMNFVGTVVH 161 (264)
T ss_dssp HHHHHGGGTCCCEEECSSSCCHHHHHHHHHH
T ss_pred hhHhccCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 1 11 34789999999988766555543
No 37
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=31.58 E-value=1e+02 Score=23.94 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCC--CCchHHHHHH
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMG--DKDYLKDILV 102 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g--~~D~~~~~l~ 102 (248)
+.+.+.+++...++|.||.+|=..-. +...+.+.|+
T Consensus 31 ~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~ 68 (195)
T 1xm7_A 31 IVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWK 68 (195)
T ss_dssp HHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHH
Confidence 33444444434579999999976543 3334555565
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=30.29 E-value=98 Score=25.69 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEcC--CCCCC--CCchHHHHHHHhcCCce
Q psy8242 63 RDDPDLLLQCLKSNLASCDVIISTG--SVSMG--DKDYLKDILVTDLGASI 109 (248)
Q Consensus 63 ~Dd~~~i~~~l~~a~~~~DvvittG--G~s~g--~~D~~~~~l~~~~g~~~ 109 (248)
.-+.+.|.+.+++..+++|+||+=| |...+ +.....+..+ .++..+
T Consensus 115 ~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~-~l~~pV 164 (242)
T 3qxc_A 115 PIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFAL-KLKAKM 164 (242)
T ss_dssp CCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHH-HHTCEE
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHH-HcCCCE
Confidence 3468899999998888999999755 44432 2334566666 677554
No 39
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=30.29 E-value=59 Score=25.29 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=43.9
Q ss_pred cCCeEEEEecCCcccCCCCC------CCCC--ccccCCHHHHHHHHHHhcC-CCcEEEEcCCCCCCCCchHHHHHHHhcC
Q psy8242 36 KKPIIHILSTGNELDEPDAH------VLKP--GICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTDLG 106 (248)
Q Consensus 36 ~~prV~iistG~El~~~~~~------~~~~--~~v~Dd~~~i~~~l~~a~~-~~DvvittGG~s~g~~D~~~~~l~~~~g 106 (248)
..|||+++...=|.-..... .... .+...+.+.+++.+++..+ ++|+|++.+|++ |+..+.|. +.|
T Consensus 20 ~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~----d~a~~~l~-k~g 94 (159)
T 1ass_A 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGID----DVAQHYLA-KEG 94 (159)
T ss_dssp EEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBC----HHHHHHHH-HTT
T ss_pred CCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccC----HHHHHHHH-HCC
Confidence 56999999877654322210 0000 2444455566777777654 799999999884 99999998 666
No 40
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=30.14 E-value=11 Score=30.07 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=36.2
Q ss_pred HHHHhcCCCcEEEEcCCC---CCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEe
Q psy8242 72 CLKSNLASCDVIISTGSV---SMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATL 127 (248)
Q Consensus 72 ~l~~a~~~~DvvittGG~---s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~ 127 (248)
+.+++++.+|.||+-|=+ +...+||+.+...+ | .-.+++.=|.|+.+|.+
T Consensus 65 aak~la~~yDavIaLG~VIrG~T~Hfd~Va~~vs~--G----l~~v~L~~~vPV~~GVL 117 (160)
T 2c92_A 65 VAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQ--G----LTRVSLDSSTPIANGVL 117 (160)
T ss_dssp HHHHHHTSCSEEEEEEEEECCSSTHHHHHHHHHHH--H----HHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCEEEEEeeeecCCchHHHHHHHHHHH--H----HHHHHhhcCCCEEEEEc
Confidence 344445579999999887 44458998887763 2 23577888899999954
No 41
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=29.94 E-value=34 Score=30.48 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCCC------------CchHHHHHHHhcCCceee--------eeee-eecCCcEEE-E---EeCCEEE
Q psy8242 78 ASCDVIISTGSVSMGD------------KDYLKDILVTDLGASIHF--------GRVN-MKPGKPTTF-A---TLGNKLI 132 (248)
Q Consensus 78 ~~~DvvittGG~s~g~------------~D~~~~~l~~~~g~~~~f--------~~v~-~~PG~p~~~-g---~~~~~~v 132 (248)
+.+||+|.+|.+.... .+.++++.. . .+.++ -+|. .+| .|+.. + .+.++++
T Consensus 68 ~~~dILlVEGsV~~~~~g~y~~~gg~~~~e~l~e~~~-~--~k~VIAvGtCA~~GGi~a~~~-n~~~~~gv~~~i~~~vd 143 (339)
T 3rgw_S 68 KGNYILAVEGNPPLNQDGMSCIIGGRPFIEQLKYVAK-D--AKAIISWGSCASWGCVQAAKP-NPTQATPVHKVITDKPI 143 (339)
T ss_dssp TTCSEEEEESBCBCSGGGTTBEETTEEHHHHHHHHHT-T--CSEEEEEHHHHHTCTGGGSTT-CTTCBCCGGGTCCSSCE
T ss_pred CCCcEEEEeeeccCCCCcceeccCChHHHHHHHHHcc-C--CCEEEEeccccccCCcCCCCC-CccccCCHHHhCCCCCE
Confidence 5789999999998776 345555554 2 23322 1232 112 11111 1 1235689
Q ss_pred EEcCCChHHHHHHHHHHHH
Q psy8242 133 FCLPGNPVSAMVTCHLFVL 151 (248)
Q Consensus 133 ~~LPG~P~aa~~~~~~~v~ 151 (248)
+.+||-|..-......++.
T Consensus 144 i~IPGCPP~Pe~i~~~l~~ 162 (339)
T 3rgw_S 144 IKVPGCPPIAEVMTGVITY 162 (339)
T ss_dssp EEECSSSCCHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHH
Confidence 9999999888776666553
No 42
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=29.24 E-value=25 Score=31.38 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCcEEEEcC----CCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 68 LLLQCLKSNLASCDVIISTG----SVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 68 ~i~~~l~~a~~~~DvvittG----G~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
+..+.|+++++.||.++.+- |+|-|--=++.+.++ ++| .+.-.|-.+|-.
T Consensus 94 e~~d~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~k-e~g--~lt~~Vvt~Pf~ 147 (353)
T 1w5f_A 94 ESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAK-EMG--ILTVAIVTTPFY 147 (353)
T ss_dssp HTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHH-HTT--CEEEEEEEECCG
T ss_pred HHHHHHHHHHccCCEEEEEeccCCCccccHHHHHHHHHH-HhC--CcEEEEEeCCcc
Confidence 34455667778899988764 455454556677777 666 445567677753
No 43
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=28.36 E-value=17 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=26.5
Q ss_pred EEecCCceeCHHHHHHHHhCCCCeEEeec
Q psy8242 8 TILEEGNLIGPPELGLLASVGVTSITVYK 36 (248)
Q Consensus 8 ~ll~~G~~l~p~~i~~Las~Gi~~V~V~~ 36 (248)
+++++|+.|++.+|..|...|+..|.|..
T Consensus 51 Lll~~G~~lt~~~i~~L~~~gi~~v~I~~ 79 (328)
T 3tm8_A 51 LYLRRGDSFEGERLKRLKDKKLRKMYILT 79 (328)
T ss_dssp EEECTTCCBSGGGGGGGSSSCCCEEEEEG
T ss_pred EEecCCccCCHHHHHHHHHcCCcEEEEec
Confidence 36999999999999999999999999854
No 44
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=27.48 E-value=99 Score=23.05 Aligned_cols=55 Identities=7% Similarity=0.183 Sum_probs=36.0
Q ss_pred CeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCCCC-CchHHHHHHHhcCCce
Q psy8242 38 PIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD-KDYLKDILVTDLGASI 109 (248)
Q Consensus 38 prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~g~-~D~~~~~l~~~~g~~~ 109 (248)
.+|.+++|||=-. .-+.+++-+.+..-.+-+.|.|++... ...+.++++ +.|..+
T Consensus 5 ~~VLFVC~gN~cR----------------SpmAEa~~~~~~~~~~~v~SAGt~g~~~~~~a~~~l~-e~Gid~ 60 (134)
T 2l17_A 5 KKVMFVCKRNSCR----------------SQMAEGFAKTLGAGKIAVTSCGLESSRVHPTAIAMME-EVGIDI 60 (134)
T ss_dssp EEEEEECCSSTHH----------------HHHHHHHHHHHSBTTEEEEEECCTTSSCCHHHHHHHH-TTTCCC
T ss_pred CEEEEEeCCchHH----------------HHHHHHHHHHHcCCCEEEEcccCCCCCCCHHHHHHHH-HcCCCc
Confidence 4799999998332 444555544433336889999998322 567788888 777543
No 45
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=27.12 E-value=76 Score=26.01 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=35.8
Q ss_pred ccCCCEEecCCceeCHHHHHHHHhCCCCeEEeecCCeEEEEecCCcccCC
Q psy8242 3 IRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP 52 (248)
Q Consensus 3 ~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~prV~iistG~El~~~ 52 (248)
+...-+|+++|++|+|.+..+|.-+||.-.+. +---.++...|. +.++
T Consensus 152 i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~-~l~l~~~~~~g~-i~~~ 199 (213)
T 3jsy_A 152 IKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKV-GLNILAVYEDGI-IYTP 199 (213)
T ss_dssp ECSCEEEECTTSBCCHHHHHHHHHTTCCCEEE-SCEEEEEEETTE-EECH
T ss_pred EccceEEEecCCCcCHHHHHHHHHcCCCcEEE-EEEEEEEEeCCc-eeCH
Confidence 44556899999999999999999999998776 333345666654 4443
No 46
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=26.52 E-value=33 Score=29.47 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHhc---CCCcEEEEcCCCC--CCC-----------CchHHHHHHHhcCCceee--------eeee-eecCCc
Q psy8242 67 DLLLQCLKSNL---ASCDVIISTGSVS--MGD-----------KDYLKDILVTDLGASIHF--------GRVN-MKPGKP 121 (248)
Q Consensus 67 ~~i~~~l~~a~---~~~DvvittGG~s--~g~-----------~D~~~~~l~~~~g~~~~f--------~~v~-~~PG~p 121 (248)
+..++.++++. +.+||+|.+|.+. ... .+.++++.. . .+.++ -+|. .+| .|
T Consensus 51 ~~a~~~l~~~~~~~~~~dilvVEGsV~~p~~~~g~~~~gg~~~~e~l~e~~~-~--~k~VIA~G~CA~~GGi~a~~~-n~ 126 (269)
T 3myr_A 51 EAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYSILMETVE-H--AAAVIAVGTCAAFGGLPQARP-NP 126 (269)
T ss_dssp HHHHHHHHHHHHHTTTTCEEEEESBEECTTSCGGGBEETTEEHHHHHHHHHT-T--CSEEEEEHHHHHHCHHHHSTT-CT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeccCCCCcCCCccceeCChHHHHHHHHHcc-c--CCEEEEeccccccCCccCCCC-Cc
Confidence 33344444444 4689999999997 332 344555444 2 23322 1222 122 12
Q ss_pred EEE-E---EeCCEEEEEcCCChHHHHHHHHHHHH
Q psy8242 122 TTF-A---TLGNKLIFCLPGNPVSAMVTCHLFVL 151 (248)
Q Consensus 122 ~~~-g---~~~~~~v~~LPG~P~aa~~~~~~~v~ 151 (248)
+.. + .+.+++++.+||-|..-...++.++.
T Consensus 127 ~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ 160 (269)
T 3myr_A 127 TGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAH 160 (269)
T ss_dssp TCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHH
T ss_pred cccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHH
Confidence 111 1 12357899999999988776666553
No 47
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=26.30 E-value=99 Score=24.77 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCc
Q psy8242 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGAS 108 (248)
Q Consensus 73 l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~ 108 (248)
+++.++.-.+.|++||...++.|.+...++..++++
T Consensus 95 i~~ll~~g~ipVi~~g~~~~~~D~~Aa~lA~~l~Ad 130 (219)
T 2ij9_A 95 AEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKAD 130 (219)
T ss_dssp HHHHHTTCSEEEECCCSSSSCTHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCEEEEeCCCCCCCchHHHHHHHHHcCCC
Confidence 555666778999999998999999999998778875
No 48
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=26.23 E-value=43 Score=28.46 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHhcCCCcEEEEcCCCCCCCCchHHHHHHHhcCCceeeeeeeeecCCcEE-EEEeCCEEEEEcCCChHHH-----HHHH
Q psy8242 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTT-FATLGNKLIFCLPGNPVSA-----MVTC 146 (248)
Q Consensus 73 l~~a~~~~DvvittGG~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~-~g~~~~~~v~~LPG~P~aa-----~~~~ 146 (248)
+++.++++|+|+++=.... +..+.++ .+...-++-.++..|+.... .+...+..+++.||-|... ...+
T Consensus 209 l~~~l~~aDvVi~~~p~~~----i~~~~~~-~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~pg~~g~v~~a~a~~l~ 283 (300)
T 2rir_A 209 LKEHVKDIDICINTIPSMI----LNQTVLS-SMTPKTLILDLASRPGGTDFKYAEKQGIKALLAPGLPGIVAPKTAGQIL 283 (300)
T ss_dssp HHHHSTTCSEEEECCSSCC----BCHHHHT-TSCTTCEEEECSSTTCSBCHHHHHHHTCEEEECCCHHHHHCHHHHHHHH
T ss_pred HHHHhhCCCEEEECCChhh----hCHHHHH-hCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEECCCCCCcHHHHHHHHHH
Confidence 4556778999998765422 2244555 55433444455555554311 0112356777778666543 4445
Q ss_pred HHHHHHHHHHhc
Q psy8242 147 HLFVLPALKALA 158 (248)
Q Consensus 147 ~~~v~P~l~~l~ 158 (248)
...+.|+|..+.
T Consensus 284 ~~~~~~~l~~~~ 295 (300)
T 2rir_A 284 ANVLSKLLAEIQ 295 (300)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 556677777664
No 49
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=25.70 E-value=56 Score=28.46 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=53.9
Q ss_pred CCCEEecCCceeCHHHHHHHHhCCCCeEEeecCC--------eEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHh
Q psy8242 5 KGATILEEGNLIGPPELGLLASVGVTSITVYKKP--------IIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSN 76 (248)
Q Consensus 5 ~G~~ll~~G~~l~p~~i~~Las~Gi~~V~V~~~p--------rV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a 76 (248)
.|+++..+|.+|++.++--+...|+..+.|-..- -|---.||.-+.+.+. .-+.+.+....+.-
T Consensus 111 ~g~v~~~~gk~it~r~~~~~~~~g~~~i~v~~~~l~g~~la~divd~~tGEvl~~a~~--------~it~~~l~~l~~~g 182 (296)
T 3lti_A 111 NGXVYVEXGRRITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANM--------ELSLDLLAXLSQSG 182 (296)
T ss_dssp TTEEEECTTCBCCHHHHHHHHHTTCCEEECCHHHHHTSBBCSCEECTTTCCEEECTTC--------BCCHHHHHHHHHTT
T ss_pred CCceeeecccchhHHHHHHHHHcCCceeecCHHHhccceeccceecccccceeecccc--------ccCHHHHHHHHhcC
Confidence 4889999999999999999999999998883210 1222235544444443 12345555555444
Q ss_pred cCCCcEEEEcCCCCCCCCchHHHHHH
Q psy8242 77 LASCDVIISTGSVSMGDKDYLKDILV 102 (248)
Q Consensus 77 ~~~~DvvittGG~s~g~~D~~~~~l~ 102 (248)
.....++.+. ... ...++...|+
T Consensus 183 i~~i~~l~~~-~~~--~~~~i~~tL~ 205 (296)
T 3lti_A 183 HKRIETLFTN-DLD--HGPYISETLR 205 (296)
T ss_dssp CCEEEEECCC-SSS--SCCHHHHHHH
T ss_pred cceEEEEEec-ccc--chHHHHHHHH
Confidence 4444444442 222 3467888887
No 50
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=25.23 E-value=76 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=19.9
Q ss_pred cccCCHHHHHHHHHHhcCCCcEEEEcCCC
Q psy8242 61 ICRDDPDLLLQCLKSNLASCDVIISTGSV 89 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~~~~DvvittGG~ 89 (248)
+-+++-..|.+.+++.++++|=+|+|=|+
T Consensus 61 mt~~~w~~la~~I~~~~~~~dG~VItHGT 89 (326)
T 1nns_A 61 MNDNVWLTLAKKINTDCDKTDGFVITHGT 89 (326)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhhcCCcEEEEcCc
Confidence 34455667778888777666777777766
No 51
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=25.17 E-value=73 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCCCCC--CchHHHHHHHhcCCc
Q psy8242 67 DLLLQCLKSNLASCDVIISTGSVSMGD--KDYLKDILVTDLGAS 108 (248)
Q Consensus 67 ~~i~~~l~~a~~~~DvvittGG~s~g~--~D~~~~~l~~~~g~~ 108 (248)
.-+.+++-+.+.. ++-+.|.|++.|. ...+.++++ +.|..
T Consensus 13 SpmAEa~~~~~~~-~~~v~SAGt~~g~~~~~~a~~~l~-e~Gid 54 (124)
T 1y1l_A 13 SVMAEALFNAMAK-SWKAESAGVEKAERVDETVKRLLA-ERGLK 54 (124)
T ss_dssp HHHHHHHHHTTCS-SCCEEEEESSCCSSCCHHHHHHHH-TTTCC
T ss_pred HHHHHHHHHHhcC-CEEEEecCCCCCCCCCHHHHHHHH-HcCcC
Confidence 4556665554433 7889999999863 677788888 67744
No 52
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=23.99 E-value=62 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHHHHhc--CCCcEEEEcCCCCC--CCC-chHHHHHHHhcC
Q psy8242 68 LLLQCLKSNL--ASCDVIISTGSVSM--GDK-DYLKDILVTDLG 106 (248)
Q Consensus 68 ~i~~~l~~a~--~~~DvvittGG~s~--g~~-D~~~~~l~~~~g 106 (248)
.+.++|++.. +++|+|+-.+++-. +.. |+|.+++. .++
T Consensus 101 ~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~-~Ln 143 (143)
T 1u2m_A 101 RIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLK-QVK 143 (143)
T ss_dssp HHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHH-HCC
T ss_pred HHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHH-HhC
Confidence 3444444443 47999998765422 456 99999998 664
No 53
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=23.75 E-value=51 Score=28.47 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=20.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHHHHHHHHhcC
Q psy8242 129 NKLIFCLPGNPVSAMVTCHLFVLPALKALAG 159 (248)
Q Consensus 129 ~~~v~~LPG~P~aa~~~~~~~v~P~l~~l~G 159 (248)
.+|++.+||-|...-..+..++. ++.+..+
T Consensus 155 ~~p~i~IPGCPP~Pe~i~~~L~~-l~~~~~~ 184 (283)
T 1cc1_S 155 EKLLVNVPGCPPHPDWMVGTLVA-AWSHVLN 184 (283)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHH-HHHHHHS
T ss_pred CCceEEeeCCCCCHHHHHHHHHH-HhhhhhH
Confidence 45789999999988766666543 4444433
No 54
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=23.74 E-value=32 Score=31.06 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCcEEEEcC----CCCCCCCchHHHHHHHhcCCceeeeeeeeecCC
Q psy8242 69 LLQCLKSNLASCDVIISTG----SVSMGDKDYLKDILVTDLGASIHFGRVNMKPGK 120 (248)
Q Consensus 69 i~~~l~~a~~~~DvvittG----G~s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~ 120 (248)
..+.|+++++.||.++.+- |+|-|---++.+..+ ++| .+.-.|-..|-.
T Consensus 85 ~~d~Ir~~le~~d~~fi~as~GGGTGSG~ap~laela~-e~g--~ltvsVv~~Pf~ 137 (382)
T 1rq2_A 85 AKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIAR-KLG--ALTVGVVTRPFS 137 (382)
T ss_dssp THHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHH-HHT--CEEEEEEEECCG
T ss_pred HHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHH-HcC--CcEEEEEecCcc
Confidence 3445556667899988874 444444456666555 676 344456677753
No 55
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=23.65 E-value=78 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHhcC---CCcEEEEcCCCC
Q psy8242 64 DDPDLLLQCLKSNLA---SCDVIISTGSVS 90 (248)
Q Consensus 64 Dd~~~i~~~l~~a~~---~~DvvittGG~s 90 (248)
|..+.+++.++++.+ +.|+||.+|=..
T Consensus 23 ~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~ 52 (274)
T 3d03_A 23 DVNAANADVVSQLNALRERPDAVVVSGDIV 52 (274)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSEEEEESCCB
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 335677777776653 579999999654
No 56
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=22.62 E-value=1.3e+02 Score=23.48 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCeEEEEecCCcccCCCCCCCCCccccCCHHHHHHHHHHhcCCCcEEEEcCCCCC----CCCchHHHHHHHhcCCc
Q psy8242 37 KPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSM----GDKDYLKDILVTDLGAS 108 (248)
Q Consensus 37 ~prV~iistG~El~~~~~~~~~~~~v~Dd~~~i~~~l~~a~~~~DvvittGG~s~----g~~D~~~~~l~~~~g~~ 108 (248)
..||.+++|||=-. .-+.++|-+.+- .++-|.|.|++. .....+.++++ +.|..
T Consensus 22 m~~VLFVCtgN~cR----------------SpmAEal~r~~~-~~~~v~SAGt~~~~g~~~~p~a~~vl~-e~Gid 79 (167)
T 2fek_A 22 FNNILVVCVGNICR----------------SPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAA-EHQLS 79 (167)
T ss_dssp CCEEEEEESSSSSH----------------HHHHHHHHHHHC-TTCEEEEEETTCCTTCCCCHHHHHHHH-HTTCC
T ss_pred cCeEEEEcCCcHHH----------------HHHHHHHHHHhc-CCeEEEeeecCCCCCCCCCHHHHHHHH-HcCCC
Confidence 45899999998332 444455444322 248899999975 44677888888 67744
No 57
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=21.09 E-value=44 Score=29.59 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=17.3
Q ss_pred HhcCCCcEEEEcCCCC----CCCCchHH
Q psy8242 75 SNLASCDVIISTGSVS----MGDKDYLK 98 (248)
Q Consensus 75 ~a~~~~DvvittGG~s----~g~~D~~~ 98 (248)
++++++|+||+|+|.. +.+.|++.
T Consensus 96 ~a~~~advVvi~aG~prkpGmtR~DLl~ 123 (345)
T 4h7p_A 96 VAFDGVAIAIMCGAFPRKAGMERKDLLE 123 (345)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHH
Confidence 4568999999999974 44455553
No 58
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=20.71 E-value=1.2e+02 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=25.4
Q ss_pred cccCCHHHHHHHHHHhcC--CCcEEEEcCCCCCCCCchHHHHH
Q psy8242 61 ICRDDPDLLLQCLKSNLA--SCDVIISTGSVSMGDKDYLKDIL 101 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~~--~~DvvittGG~s~g~~D~~~~~l 101 (248)
+-+++-..|.+.+++.++ ++|=+|+|=|+ |-+.+.-
T Consensus 62 mt~~~w~~la~~I~~~~~~~~~dG~VItHGT-----DTmeeTA 99 (331)
T 1agx_A 62 ITDKELLSLARQVNDLVKKPSVNGVVITHGT-----DTMEETA 99 (331)
T ss_dssp CCHHHHHHHHHHHHHHHTSTTCCEEEEECCG-----GGHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCCEEEEecCc-----chHHHHH
Confidence 345666778888888874 58888888877 6555543
No 59
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=20.57 E-value=56 Score=25.72 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCC---CCCCCchHHHHHHHhcCCceeeeeeeeecCCcEEEEEe
Q psy8242 78 ASCDVIISTGSV---SMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATL 127 (248)
Q Consensus 78 ~~~DvvittGG~---s~g~~D~~~~~l~~~~g~~~~f~~v~~~PG~p~~~g~~ 127 (248)
.++|.||+-|=+ +...+||+.+...+ | .-.+++.=|.|+.+|.+
T Consensus 72 ~~yDavIaLG~VIrG~T~Hfd~Va~~v~~--g----l~~vsl~~~vPV~~GVL 118 (157)
T 2i0f_A 72 TEYDGFVALGTVIRGETYHFDIVSNESCR--A----LTDLSVEESIAIGNGIL 118 (157)
T ss_dssp CCCSEEEEEEEEECCSSSTTHHHHHHHHH--H----HHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEEeeeeecCCchHHHHHHHHHHH--H----HHHHHhhcCCCEEEEEe
Confidence 579999999877 45668999888773 3 24577888999999975
No 60
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=20.17 E-value=1e+02 Score=27.21 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=20.8
Q ss_pred cccCCHHHHHHHHHHhc--CCCcEEEEcCCC
Q psy8242 61 ICRDDPDLLLQCLKSNL--ASCDVIISTGSV 89 (248)
Q Consensus 61 ~v~Dd~~~i~~~l~~a~--~~~DvvittGG~ 89 (248)
+-+++-..|.+.+++++ +++|=+|+|=|+
T Consensus 70 mt~~~w~~la~~i~~~l~~~~~dGvVItHGT 100 (337)
T 4pga_A 70 ITNDDLLKLGKRVAELADSNDVDGIVITHGT 100 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCSEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhhccCCCeEEEECCC
Confidence 34566777888888864 468877777776
Done!