RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8242
(248 letters)
>gnl|CDD|238452 cd00887, MoeA, MoeA family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (MoCF), an
essential cofactor of a diverse group of redox enzymes.
MoCF biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and eukaryotes. MoCF
contains a tricyclic pyranopterin, termed molybdopterin
(MPT). MoeA, together with MoaB, is responsible for the
metal incorporation into MPT, the third step in MoCF
biosynthesis. The plant homolog Cnx1 is a MoeA-MogA
fusion protein. The mammalian homolog gephyrin is a
MogA-MoeA fusion protein, that plays a critical role in
postsynaptic anchoring of inhibitory glycine receptors
and major GABAa receptor subtypes.
Length = 394
Score = 279 bits (716), Expect = 3e-93
Identities = 104/266 (39%), Positives = 144/266 (54%), Gaps = 29/266 (10%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPD-------- 53
DI+ G +L G + P ++GLLAS+G+ + VY++P + I+STG+EL EP
Sbjct: 133 DIKAGDVLLPAGTRLTPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGEPLAPGQI 192
Query: 54 ----------------AHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
A V+ GI DDP+ L + L+ L DV+I++G VS+GD D++
Sbjct: 193 YDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSVGDYDFV 252
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K++L +LG + F V MKPGKP F LG K +F LPGNPVSA+VT LFV PAL+ L
Sbjct: 253 KEVL-EELGGEVLFHGVAMKPGKPLAFGRLGGKPVFGLPGNPVSALVTFELFVRPALRKL 311
Query: 158 AGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKS 217
G+ P P +KA+L DL P R E+ RV L E L+ G Q S L S
Sbjct: 312 QGAPEPEPPRVKARLAEDLKSKPGRREFLRVRLER--DEGGLVVAPPGGQGSGLLSSLAR 369
Query: 218 CNGFAILPKATTKKTLEKNSLVNVIL 243
+G ++P+ LE V V+L
Sbjct: 370 ADGLIVIPEGVE--GLEAGEEVEVLL 393
>gnl|CDD|223380 COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme
metabolism].
Length = 404
Score = 219 bits (559), Expect = 1e-69
Identities = 103/266 (38%), Positives = 141/266 (53%), Gaps = 30/266 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPD-------- 53
D+ KG IL G + P E+ LLAS+G+ + VY+KP + I+STG+EL EP
Sbjct: 141 DVAKGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQI 200
Query: 54 ----------------AHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI DDP+ L + ++ L+ DVII++G VS+GD DY+
Sbjct: 201 YDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSVGDADYV 260
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K L +LG + F V MKPGKPT LG K +F LPGNPVSA+V LFV P L+ L
Sbjct: 261 KAALERELG-EVLFHGVAMKPGKPTGLGRLGGKPVFGLPGNPVSALVNFELFVRPLLRKL 319
Query: 158 AGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKS 217
G +P +KA+L AD+ P R E+ RV L + LLA G Q S L S
Sbjct: 320 LGLKATAPRKVKARLLADIPSKPGRREFLRVRLERD--NGRLLAEPLG-QGSGLLSSLAE 376
Query: 218 CNGFAILPKATTKKTLEKNSLVNVIL 243
+G ++P+ + +E V V+L
Sbjct: 377 ADGLIVIPE--GVEGVEAGEEVEVLL 400
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin
adenylyltransferase/molybdopterin molybdenumtransferase.
Length = 659
Score = 212 bits (541), Expect = 1e-64
Identities = 110/281 (39%), Positives = 158/281 (56%), Gaps = 43/281 (15%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP-DAH----- 55
DI K A +L+ G +G E+GLLA+VGVT + VY +P + ILSTG+EL EP
Sbjct: 146 DIEKDAKVLKAGERLGASEIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQ 205
Query: 56 -------------------VLKPGICRDDPDLLLQCLKSNLAS-CDVIISTGSVSMGDKD 95
V+ GI RDD + L + L ++S D+++++G VSMGD+D
Sbjct: 206 IRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSMGDRD 265
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNK---------LIFCLPGNPVSAMVTC 146
++K +L +++F +V MKPGKP TFA + K L F LPGNPVS +V
Sbjct: 266 FVKPLLEKR--GTVYFSKVLMKPGKPLTFAEIDAKSAPSNSKKMLAFGLPGNPVSCLVCF 323
Query: 147 HLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHY--NPSEEH--LLAY 202
+LFV+PA++ LAG S+P ++A+L + LDP RPE+HR + + N + +A
Sbjct: 324 NLFVVPAIRYLAGWSNPHLLRVQARLREPIKLDPVRPEFHRAIIRWKLNDGSGNPGFVAE 383
Query: 203 STGHQLSSKLLSCKSCNGFAILPKATTKKTLEKNSLVNVIL 243
STGHQ+SS+LLS KS N LP T L + V+ I+
Sbjct: 384 STGHQMSSRLLSMKSANALLELPA--TGNVLSAGTSVSAII 422
Score = 28.6 bits (64), Expect = 3.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 120 KPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLPALK 155
K T FA L G+ LI +PGNP +A+ C +LPALK
Sbjct: 567 KVTPFAMLSRSAAGIRGSTLIINMPGNP-NAVAECMEALLPALK 609
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoeA;
Provisional.
Length = 597
Score = 165 bits (420), Expect = 1e-47
Identities = 89/253 (35%), Positives = 120/253 (47%), Gaps = 28/253 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP--------- 52
D+ +G L G + PE GLLAS+G + V+++P + + STG+E+ P
Sbjct: 332 DLAQGQVALAAGTRLSAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGETLKPNCI 391
Query: 53 -DAH--------------VLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
D++ V+ GI D L L+ A DV+IS+G VS+GD DY+
Sbjct: 392 YDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVSVGDADYI 451
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K L LG I F R+NM+PG+P F +G+ F LPGNPV+ MV+ FV PAL+ L
Sbjct: 452 KTAL-AKLG-QIDFWRINMRPGRPLAFGQIGDSPFFGLPGNPVAVMVSFLQFVEPALRKL 509
Query: 158 AGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKS 217
AG + P L A L R E+ R H L +TG Q S L S
Sbjct: 510 AGEQNWQPLLFPAIADETLRSRQGRTEFSRGIYHLGADGR-LHVRTTGKQGSGILSSMSE 568
Query: 218 CNGF-AILPKATT 229
N I P A T
Sbjct: 569 ANCLIEIGPAAET 581
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 161 bits (410), Expect = 7e-46
Identities = 91/271 (33%), Positives = 126/271 (46%), Gaps = 37/271 (13%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPG- 60
DI G IL +G + P ++G LA+ GV + VYKKP + I+STG+EL EP LKPG
Sbjct: 151 DIVAGELILPKGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGE-PLKPGK 209
Query: 61 ------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDY 96
I DD + L L+ L CD+++ +G S G D
Sbjct: 210 IYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAGAGDV 269
Query: 97 LKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKA 156
+ + +LG + V +KPGKPT +G K + LPG PVSA+ FV P L+
Sbjct: 270 TYRV-IEELG-EVLVHGVAIKPGKPTILGVIGGKPVVGLPGYPVSALTIFEEFVAPLLRK 327
Query: 157 LAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAY--STGHQLSSKLLS 214
LAG P A +KA+L + + R E+ VSL + +AY S G S + S
Sbjct: 328 LAGLPPPERATVKARLARRVRSELGREEFVPVSLGRVG--DGYVAYPLSRG---SGAITS 382
Query: 215 CKSCNGFAILPKATTKKTLEKNSLVNVILTK 245
+GF +P T + LE V V L
Sbjct: 383 LVRADGFIEIPANT--EGLEAGEEVEVELFG 411
>gnl|CDD|182643 PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA;
Provisional.
Length = 411
Score = 145 bits (367), Expect = 4e-41
Identities = 85/249 (34%), Positives = 118/249 (47%), Gaps = 30/249 (12%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP--------- 52
DI +GA + G + EL +LAS+G+ + V +K + + STG+EL P
Sbjct: 142 DISQGAVVFPAGTRLTTAELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 53 ---------------DAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFC-LPGNPVSAMVTCHLFVLPALKA 156
K IL +LG I F ++ +KPGKP F L N FC LPGNPVSA +T + V P L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSW-FCGLPGNPVSAALTFYQLVQPLLAK 318
Query: 157 LAGSSHPSPAL-LKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215
L+G++ + + + L P R ++ R L N E L +TGHQ S S
Sbjct: 319 LSGNTASGLPPRQRVRTASRLKKTPGRLDFQRGILQRNADGE-LEVTTTGHQGSHIFSSF 377
Query: 216 KSCNGFAIL 224
N F +L
Sbjct: 378 SLGNCFIVL 386
>gnl|CDD|172968 PRK14497, PRK14497, putative molybdopterin biosynthesis protein
MoeA/unknown domain fusion protein; Provisional.
Length = 546
Score = 119 bits (300), Expect = 6e-31
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 31/214 (14%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPG- 60
DI KG+ IL +G +I ++GLLAS+G++S+ VY+KP I++++TG+EL EP + L PG
Sbjct: 144 DIPKGSIILRKGEVISHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEP-GNSLSPGK 202
Query: 61 ------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDY 96
+ DD + + +K ++ DV+I TG S G+KD+
Sbjct: 203 IYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSAGEKDF 262
Query: 97 LKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKA 156
+ + +LG I G + +KPGKPT + K + LPGN VS MV ++ +L LK+
Sbjct: 263 VHQ-AIRELGNIIVHG-LKIKPGKPTILGIVDGKPVIGLPGNIVSTMVVLNMVILEYLKS 320
Query: 157 LAGSSHPSPALLKAKLTADLSLDPERPEYHRVSL 190
L S L K K + + HR +L
Sbjct: 321 LYPSRKEILGLGKIKAR---LALRVKADEHRNTL 351
>gnl|CDD|216230 pfam00994, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 140
Score = 106 bits (266), Expect = 5e-29
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 42 ILSTGNELDE---PD--------------AHVLKPGICRDDPDLLLQCLKSNLASCDVII 84
I++TG+EL D A V++ GI DDP+ + + L + DV+I
Sbjct: 2 IITTGDELLSGQIYDTNGPLLAALLREAGAEVIRYGIVPDDPEAIKEALAAAADEADVVI 61
Query: 85 STGSVSMGDKDYLKDIL-----VTDLGASIHFGRVNMKPGKPTTFATLG--NKLIFCLPG 137
+TG G D + L G F V +KPGKP A +F LPG
Sbjct: 62 TTGGTGPGPDDVTPEALAELGGRELPGGEELFHGVALKPGKPVGLAPGAGLGTPVFGLPG 121
Query: 138 NPVSAMVTCHLFVLPALKA 156
NPV+A+V L VLP L+
Sbjct: 122 NPVAALVMFELLVLPLLRH 140
>gnl|CDD|232858 TIGR00177, molyb_syn, molybdenum cofactor synthesis domain. The
Drosophila protein cinnamon, the Arabidopsis protein
cnx1, and rat protein gephyrin each have one domain like
MoeA and one like MoaB and Mog. These domains are,
however, distantly related to each other, as captured by
This model. Gephyrin is unusual in that it seems to be a
tubulin-binding neuroprotein involved in the clustering
of both blycine receptors and GABA receptors, rather
than a protein of molybdenum cofactor biosynthesis.
Length = 144
Score = 101 bits (254), Expect = 3e-27
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 47 NELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLG 106
L+E +V + GI DDP+ + + L+ + DV+++TG +G +D + L +LG
Sbjct: 34 ALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGPRDVTPEAL-EELG 92
Query: 107 ASIHFGR------VNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLP 152
G V +PGKP T G LIF LPGNPVSA+VT + VLP
Sbjct: 93 EKEIPGFGEYFTAVLSRPGKPATAGVRGGTLIFGLPGNPVSALVTFEVLVLP 144
>gnl|CDD|238387 cd00758, MoCF_BD, MoCF_BD: molybdenum cofactor (MoCF) binding
domain (BD). This domain is found a variety of proteins
involved in biosynthesis of molybdopterin cofactor, like
MoaB, MogA, and MoeA. The domain is presumed to bind
molybdopterin.
Length = 133
Score = 97.4 bits (243), Expect = 1e-25
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 29 VTSITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGS 88
++ + + + +L V+ G+ DD D + L D++++TG
Sbjct: 11 LSQGQIEDTNGPALEALLEDLGCE---VIYAGVVPDDADSIRAALIEASREADLVLTTGG 67
Query: 89 VSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHL 148
+G +D + L H V + PG T F +G LI LPG+P SA+ T
Sbjct: 68 TGVGRRDVTPEALAELGEREAHGKGVALAPGSRTAFGIIGKVLIINLPGSPKSALTTFEA 127
Query: 149 FVLPAL 154
VLPAL
Sbjct: 128 LVLPAL 133
>gnl|CDD|214856 smart00852, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 138
Score = 94.6 bits (236), Expect = 2e-24
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 42 ILSTGNELDEPD-----------AHVLKPGI---------CRDDPDLLLQCLKSNLASCD 81
I+STG+EL A + + GI DDP+ + + L+ LA D
Sbjct: 2 IISTGDELLSGGQIRDSNGPMLAALLRELGIEVVRVVVVGGPDDPEAIREALREALAEAD 61
Query: 82 VIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATL---------GNKLI 132
V+I+TG G D + L G + V M+PG P G K +
Sbjct: 62 VVITTGGTGPGPDDLTPEALAELGGRELLGHGVAMRPGGPPGPLANLSGTAPGVRGKKPV 121
Query: 133 FCLPGNPVSAMVTCHLF 149
F LPGNPV+A+V
Sbjct: 122 FGLPGNPVAALVMFEEL 138
>gnl|CDD|237789 PRK14690, PRK14690, molybdopterin biosynthesis protein MoeA;
Provisional.
Length = 419
Score = 95.8 bits (238), Expect = 7e-23
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 30/215 (13%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEP--------- 52
D+ G L G + P +L LL++VG+T ++V + + +LSTG+EL EP
Sbjct: 158 DVIAGDVALPAGRRLTPADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGALAEVGQI 217
Query: 53 -DAHVLKP----------------GICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKD 95
DA+ +P G DD L L A DVI+++G S GD+D
Sbjct: 218 YDAN--RPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAGDED 275
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALK 155
++ +L + GA + R+ +KPG+P +F LPGNPV+A+V +F PA+
Sbjct: 276 HVSALL-REAGAMQSW-RIALKPGRPLALGLWQGVPVFGLPGNPVAALVCTLVFARPAMS 333
Query: 156 ALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSL 190
LAG P + P R EY R L
Sbjct: 334 LLAGEGWSEPQGFTVPAAFEKRKKPGRREYLRARL 368
>gnl|CDD|217568 pfam03454, MoeA_C, MoeA C-terminal region (domain IV). This domain
is found in proteins involved in biosynthesis of
molybdopterin cofactor however the exact molecular
function of this domain is uncertain. The structure of
this domain is known and forms an incomplete beta
barrel.
Length = 72
Score = 51.4 bits (124), Expect = 5e-09
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 169 KAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAILPKAT 228
KA+L DL DP R E+ RV L + A G Q S L S +G ++P+ T
Sbjct: 1 KARLADDLPSDPGRREFVRVRLTEDDGR--YYATPIGKQGSGMLSSLAEADGLIVIPEGT 58
Query: 229 TKKTLEKNSLVNVIL 243
LE V VIL
Sbjct: 59 E--GLEAGEEVEVIL 71
>gnl|CDD|217567 pfam03453, MoeA_N, MoeA N-terminal region (domain I and II). This
family contains two structural domains. One of these
contains the conserved DGXA motif. This region is found
in proteins involved in biosynthesis of molybdopterin
cofactor however the exact molecular function of this
region is uncertain.
Length = 163
Score = 42.5 bits (101), Expect = 4e-05
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVG 28
DI+KG +L +G + P ELGLLAS+G
Sbjct: 137 DIKKGDVLLRKGTRLTPAELGLLASLG 163
>gnl|CDD|223595 COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme
metabolism].
Length = 169
Score = 35.3 bits (82), Expect = 0.010
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 61 ICRDDPDLLLQCLKSNLAS-CDVIISTGSVSMGDKDY----LKDILVTDL-GASIHFGRV 114
I DD + + L + + DV+++TG + +D + + ++ G F R+
Sbjct: 48 IVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEIPGFGELFRRL 107
Query: 115 NMKPGKPTTF---ATLG---NKLIFCLPGNPVSAMVTCHLFVLPALKALAGSSH 162
+++ PT A G LIF LPG+P + +LP L H
Sbjct: 108 SLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELDYCIDLLH 161
>gnl|CDD|216924 pfam02191, OLF, Olfactomedin-like domain.
Length = 250
Score = 35.3 bits (82), Expect = 0.019
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 180 PERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKL 212
P R Y L YNP + L A+ G+QL+ L
Sbjct: 215 PNRYGYI-SMLDYNPRDRKLYAWDNGYQLTYDL 246
>gnl|CDD|238451 cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are
involved in biosynthesis of the molybdenum cofactor
(MoCF) an essential cofactor of a diverse group of redox
enzymes. MoCF biosynthesis is an evolutionarily
conserved pathway present in eubacteria, archaea, and
eukaryotes. MoCF contains a tricyclic pyranopterin,
termed molybdopterin (MPT). MogA, together with MoeA,
is responsible for the metal incorporation into MPT, the
third step in MoCF biosynthesis. The plant homolog Cnx1
is a MoeA-MogA fusion protein. The mammalian homolog
gephyrin is a MogA-MoeA fusion protein, that plays a
critical role in postsynaptic anchoring of inhibitory
glycine receptors and major GABAa receptor subtypes. In
contrast, MoaB shows high similarity to MogA, but little
is known about its physiological role. All well studied
members of this family form highly stable trimers.
Length = 152
Score = 33.6 bits (78), Expect = 0.033
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGS--VSMGDK--DYLKDILV 102
L+E V+ I DD D + + L D+I++TG ++ D + + +L
Sbjct: 29 LEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLD 88
Query: 103 TDL-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLPA 153
+L G F R + T A L G LIF LPG+P A+ +LP
Sbjct: 89 KELPGFGEAF-R--ALSLEETGTAMLSRAVAGIRGGTLIFNLPGSP-KAVREALEVILPE 144
Query: 154 L 154
L
Sbjct: 145 L 145
>gnl|CDD|239599 cd03522, MoeA_like, MoeA_like. This domain is similar to a domain
found in a variety of proteins involved in biosynthesis
of molybdopterin cofactor, like MoaB, MogA, and MoeA.
There this domain is presumed to bind molybdopterin. The
exact function of this subgroup is unknown.
Length = 312
Score = 34.4 bits (80), Expect = 0.041
Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 27/172 (15%)
Query: 2 DIRKGATILEEGNLIG-----PPELGLLASVGVTSITVYKKPIIH--ILSTGNELDEPDA 54
+ + + +G L+ P +GL+ VT VY I L
Sbjct: 138 LVERAEALARDGPLLRVAPFRPLRVGLI----VTGSEVYGGRIEDKFGPVLRARLAALGV 193
Query: 55 HVLKPGICRDDPDLLLQCLKSNLASC-DVIISTGSVSMGDKDYLKDIL---VTDLGASI- 109
+++ I D + + L + +++I TG S+ D D D+ + G +
Sbjct: 194 ELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASV-DPD---DVTPAAIRAAGGEVI 249
Query: 110 HFGRVNM--KPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAG 159
+G M PG LG + LPG S + VLP L LAG
Sbjct: 250 RYG---MPVDPGNLLLLGYLGGVPVIGLPGCARSPKLNGFDLVLPRL--LAG 296
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 34.5 bits (80), Expect = 0.058
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 164 SPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHL 199
SP L + +LD E + L+Y+P E L
Sbjct: 557 SPVLSYSDFKQLTTLDEEHYRADTLDLNYDPEETGL 592
>gnl|CDD|119401 cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated
in the posttranslational steps of the biogenesis of the
mitochondrially-encoded Cox1 subunit of cytochrome c
oxidase (complex IV). Cytochrome c oxidase (complex IV),
the terminal electron-transferring complex of the
respiratory chain, is an assemblage of nuclear and
mitochondrially-encoded subunits. Its assembly is
mediated by nuclear encoded assembly factors, one of
which is Surf1/Shy1. Mutations in human Surf1 are a
major cause of Leigh syndrome, a severe
neurodegenerative disorder.
Length = 202
Score = 33.1 bits (76), Expect = 0.075
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 172 LTADLSLDPERPEYHRVSL--HYNPSEEHLLAYST 204
L L+ E EY RV++ + P +E LL T
Sbjct: 33 LPELLAPPLEDLEYRRVTVTGTFLPEKEVLLDNRT 67
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 33.4 bits (77), Expect = 0.096
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 183 PEYHRVSLHYNPSEEHLLAYSTGHQL 208
P+Y RV + YNP + + A TG +
Sbjct: 187 PDYDRVRIEYNPRKGEIRARYTGKRG 212
>gnl|CDD|238450 cd00885, cinA, Competence-damaged protein. CinA is the first gene
in the competence- inducible (cin) operon and is
thought to be specifically required at some stage in
the process of transformation. This domain is closely
related to a domain, found in a variety of proteins
involved in biosynthesis of molybdopterin cofactor,
where the domain is presumed to bind molybdopterin.
Length = 170
Score = 30.5 bits (70), Expect = 0.47
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 61 ICRDDPDLLLQCLKSNLASCDVIISTG 87
+ DD D + + L+ D++I+TG
Sbjct: 40 VVGDDEDRIAEALRRASERADLVITTG 66
>gnl|CDD|218964 pfam06262, DUF1025, Possibl zinc metallo-peptidase. This is
possibly a family of bacterial zinc metallo-peptidases.
Although they carry the HExxHxxGxxD motif, they are
missing a final methionine which would class them as
Met-zincins.
Length = 96
Score = 29.4 bits (67), Expect = 0.56
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 9 ILEEGNLIGPPEL-GLLASVGVT------------SITVYKKPIIHILSTGNELDEPDAH 55
+L E + PP+L GL + +T IT+Y++PI+ EL E H
Sbjct: 15 VLRELGIDDPPDLLGLYEGIPLTERSVTDSGELPDRITLYRRPILDEWRDREELGELVRH 74
Query: 56 VL 57
V+
Sbjct: 75 VV 76
>gnl|CDD|215970 pfam00523, Fusion_gly, Fusion glycoprotein F0.
Length = 468
Score = 30.0 bits (68), Expect = 1.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 41 HILSTGNELDEPDAH--VLKPG--ICRDD-----PDLLLQCLKSNLASCDVIISTGSVSM 91
IL+ + + A V+ P C + D + QCL+ N +SC GS+S
Sbjct: 291 RILTNASSISGYPASDCVVTPNSVFCDYNPGQPLSDEVQQCLRGNTSSCKFTTVVGSLSP 350
>gnl|CDD|240572 cd12952, MMP_ACEL2062, Minimal MMP-like domain found in
Acidothermus cellulolyticus hypothetical protein
ACEL2062 and similar protein. The subfamily includes an
uncharacterized protein from Acidothermus cellulolyticus
(ACEL2062) and its homologs from bacteria. Although its
biological role remains unclear, ACEL2062 contains a
minimal metalloprotease (MMP)-like domain consisting of
3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x
could be any amino acid) motif. It may belong to a
superfamily of bacterial zinc metallo-peptidases, which
is characterized by a conserved HExxHxxGxxD motif.
Length = 117
Score = 28.2 bits (64), Expect = 1.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 9 ILEEGNLIGPPEL-GLLASVGVTS------------ITVYKKPIIHILSTGNELDEPDAH 55
LE + PPEL GL V +T IT++++P++ T EL E H
Sbjct: 39 TLEALGIPDPPELLGLYEGVPLTERSVSDSGVLPDRITLFRRPLLRYCRTREELREEVRH 98
Query: 56 VL 57
+
Sbjct: 99 TV 100
>gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA
ligase-associated. Members of this protein family
frequently are found annotated as a putative exonuclease
involved in mRNA processing. This protein is found,
exclusively in bacteria, associated with three other
proteins: an ATP-dependent DNA ligase, a helicase, and
putative phosphoesterase.
Length = 326
Score = 29.1 bits (66), Expect = 2.2
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 134 CLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYN 193
C P PV C F+ A L P PA AK+ A + +PE R SL
Sbjct: 117 CAPFEPVP----CDTFITEATFGLPVFRWPPPAEEIAKILAWWAQNPEAG---RASL--- 166
Query: 194 PSEEHLLAYSTG 205
L AY+ G
Sbjct: 167 -----LGAYALG 173
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 28.2 bits (63), Expect = 4.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 70 LQCLKSNLASCDVIISTGSVSMGDKDYLK-------DILVTDLGASI 109
L+ KSN+A+ + S S+G K K DI VT+ GA+I
Sbjct: 26 LEAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATI 72
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 27.7 bits (62), Expect = 6.0
Identities = 12/69 (17%), Positives = 19/69 (27%)
Query: 131 LIFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSL 190
+ + + V C L + L S + L + D + EY
Sbjct: 204 ALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVYPNSGEPYDAGKKEYDGTPD 263
Query: 191 HYNPSEEHL 199
PS L
Sbjct: 264 ELAPSYWSL 272
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 59 PGICRDDPDLLLQCLKSNLASCDVIISTGSVSMG-DKDYLKDIL 101
P I ++ + LL+ L++ LA D ++ +GS+ G D+ +++
Sbjct: 107 PEISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELI 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,465,767
Number of extensions: 1158567
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 36
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)