RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8242
(248 letters)
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A
{Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
PDB: 2fu3_A 1t3e_A
Length = 419
Score = 303 bits (778), Expect = e-102
Identities = 126/271 (46%), Positives = 170/271 (62%), Gaps = 30/271 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPD-------- 53
DI++G +L +G +GP E+GLLA+VGVT + V K P++ ++STGNEL P+
Sbjct: 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKI 205
Query: 54 ----------------AHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
+ GI D+PD LL L ++ DVII++G VSMG+KDYL
Sbjct: 206 RDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYL 265
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLG----NKLIFCLPGNPVSAMVTCHLFVLPA 153
K +L DL A IHFGRV MKPG PTTFATL K+IF LPGNPVSA+VTC+LFV+PA
Sbjct: 266 KQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPA 325
Query: 154 LKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLL 213
L+ + G P P ++KA+L+ D+ LDP RPEYHR L ++ E A STG+Q+SS+L+
Sbjct: 326 LRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWHHQEPLPWAQSTGNQMSSRLM 384
Query: 214 SCKSCNGFAILPKAT-TKKTLEKNSLVNVIL 243
S +S NG +LP T L K +V+V++
Sbjct: 385 SMRSANGLLMLPPKTEQYVELHKGEVVDVMV 415
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
biosynthesis, metal binding protein; 1.95A {Escherichia
coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
2nrp_A 2nqv_A 2nrs_A 2nqn_A
Length = 411
Score = 253 bits (649), Expect = 3e-83
Identities = 87/267 (32%), Positives = 122/267 (45%), Gaps = 30/267 (11%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPD-------- 53
DI GA + G + EL ++AS+G+ + V +K + + STG+EL P
Sbjct: 142 DISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI 201
Query: 54 ----------------AHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYL 97
V+ GI RDDP L + DV+IS+G VS+G+ DY
Sbjct: 202 YDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYT 261
Query: 98 KDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
K IL +LG I F ++ +KPGKP F L N LPGNPVSA +T + V P L L
Sbjct: 262 KTIL-EELG-EIAFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKL 319
Query: 158 AGSSH-PSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCK 216
+G++ PA + + + L P R ++ R L N E L +TGHQ S S
Sbjct: 320 SGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGE-LEVTTTGHQGSHIFSSFS 378
Query: 217 SCNGFAILPKATTKKTLEKNSLVNVIL 243
N F +L + +E V V
Sbjct: 379 LGNCFIVLERDRG--NVEVGEWVEVEP 403
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 244 bits (626), Expect = 5e-80
Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 38/271 (14%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPG- 60
DI KG ++++G +G + LL++VG+ + V++KP + ++STGNE+ P LKPG
Sbjct: 145 DIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGN-ELKPGQ 203
Query: 61 ------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDY 96
+ RDD + L ++ + DV++ +G S G KD
Sbjct: 204 IYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKDL 263
Query: 97 LKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKA 156
++ +LG + + ++PGKPT + K +F LPG P S + L V+P L
Sbjct: 264 TASVI-EELG-EVKVHGIAIQPGKPTIIGVIKGKPVFGLPGYPTSCLTNFTLLVVPLLLR 321
Query: 157 LAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCK 216
G A+L + R ++ V L E LA + S + S
Sbjct: 322 ALGREGKIG-KKVARLKHKVFSVKGRRQFLPVKL------EGDLAVPIL-KGSGAVTSFI 373
Query: 217 SCNGFAILPKATTKKTLEKNSLVNVILTKAF 247
+GF +P+ +L++ V V L K +
Sbjct: 374 DADGFVEIPETVE--SLDEGEEVEVTLFKGW 402
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP:
b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Length = 396
Score = 239 bits (612), Expect = 7e-78
Identities = 62/268 (23%), Positives = 116/268 (43%), Gaps = 45/268 (16%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAH-VLKPG 60
D++KG +L +G ++ P ++ +L ++G+ + V KP + I+ TG+EL E + K G
Sbjct: 147 DVKKGEVVLRKGTILRPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEG 206
Query: 61 -------------------------ICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKD 95
+ DD ++ + L+ CD+++ TG + GDKD
Sbjct: 207 KIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGDKD 266
Query: 96 YLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALK 155
Y + ++ F +KPG+P + + +F + G PVS +LFV AL
Sbjct: 267 YAHKFV------NLLFHGTTIKPGRPFGYG----EKVFIMSGYPVSVFAQFNLFVKHALA 316
Query: 156 ALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSC 215
+ G+ + +KA L D+ R E+ ++ E+ +A + S L S
Sbjct: 317 KMVGAQNYEVK-VKAILQDDIPSQLGRYEFIKIYY------ENGIARVIKKKGSGILSSL 369
Query: 216 KSCNGFAILPKATTKKTLEKNSLVNVIL 243
+ N + +P+ + + V + L
Sbjct: 370 LASNAYLEIPEDSE--GYRRGEEVWITL 395
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B;
3D-structure, structural genomics, NPPSFA; HET: PEG;
1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Length = 178
Score = 40.0 bits (94), Expect = 2e-04
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDY----LKDILV 102
L E ++ + DD +L+ L+ DVIISTG D ++ +
Sbjct: 49 LIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108
Query: 103 TDL-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNP 139
++ G S F V+ + A L G K+++ LPG+P
Sbjct: 109 REIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSP 154
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 35.3 bits (82), Expect = 0.007
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS-CDVIISTGSVSMGDKDY----LKDILVT 103
L E V D + L + + D+++S G + +D ++IL
Sbjct: 58 LTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDR 117
Query: 104 DL-GASIHFGRVNMKPGKPTTFA------TLGNKLIFCLPGNPVSAMVTCHLFVLPAL 154
++ G + + G G+ L+ L G+ A+ + P
Sbjct: 118 EILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSR-YAVRDGMATLNPLA 174
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 35.3 bits (82), Expect = 0.008
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDY----LKDILV 102
E HV+ I +++ + + + +AS V++ TG + + D L +
Sbjct: 37 AQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD 96
Query: 103 TDL-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNP 139
++ G F ++ + + T LI +PG+
Sbjct: 97 REVEGFGEVFRMLSFE--EIGTSTLQSRAVAGVANKTLILAMPGST 140
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics,
protein structure initiative, PSI, MCSG, midwest center
for structural genomics; 1.90A {Bacillus cereus} SCOP:
c.57.1.1
Length = 169
Score = 33.3 bits (77), Expect = 0.032
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 47 NELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDY----LKDI 100
L E V I +DD + + Q + + DV+++ G + +D + +
Sbjct: 38 ELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSAL 97
Query: 101 LVTDL-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNP 139
L ++ G F R+ + A L G K++F +PG+
Sbjct: 98 LDKEIVGFGELF-RMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSS 144
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI
biosynthetic protein; 1.80A {Mycobacterium avium subsp}
PDB: 3oi9_A 2g4r_A
Length = 164
Score = 32.6 bits (75), Expect = 0.052
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 21/132 (15%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDY----LKDILVTD 104
L + +P + D + K+ DVI+++G + D ++
Sbjct: 36 LAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVDYL 95
Query: 105 L-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLP--- 152
+ G + R + + L G LI LPG+P + +
Sbjct: 96 IPGLAEAIRRSGLPK---VPTSVLSRGVCGVAGQTLIVNLPGSP-GGVRDGLGVLAGVLD 151
Query: 153 -ALKALAGSSHP 163
AL LAG HP
Sbjct: 152 HALDQLAGKDHP 163
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo
sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Length = 189
Score = 32.7 bits (75), Expect = 0.060
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 55 HVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKDY----LKDILVTDL-GA 107
+ I D+ + + + L + ++I++TG +D K+++ + G
Sbjct: 52 TISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGM 111
Query: 108 SIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLPALK 155
++ ++ T L G LI LPG+ C F+LPAL
Sbjct: 112 ALAMLMGSLNV---TPLGMLSRPVCGIRGKTLIINLPGSK-KGSQECFQFILPALP 163
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold,
structu genomics, NPPSFA; 1.64A {Thermus thermophilus}
PDB: 3mch_A
Length = 164
Score = 32.2 bits (74), Expect = 0.087
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKDY----LKDILV 102
L V + D+P ++ + L+ ++ D+I++ G + +D +++L
Sbjct: 30 LAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRELLD 89
Query: 103 TDL-GASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLP- 152
++ G + V ++ T A L G LI LPG+P VLP
Sbjct: 90 REVPGLAELMRLVGLRK---TPMAALSRGVAGVRGRTLILNLPGSP-KGARESLEAVLPV 145
Query: 153 ---ALKALAGSSHP 163
AL + G
Sbjct: 146 LPHALSLVTGKPWK 159
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT,
structural genomics, NPPSFA, national PR protein
structural and functional analyses; 1.70A {Aquifex
aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A
2f7y_A 2fuw_A
Length = 178
Score = 31.9 bits (73), Expect = 0.11
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 28/140 (20%)
Query: 53 DAHVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKDY-------LKDILVT 103
++ + D+ DL+ + L ++ C +I++TG +D + + ++
Sbjct: 40 TPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLP 99
Query: 104 DLGASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLP--- 152
G + K A L G+ LI LPG P ++ C V+P
Sbjct: 100 GFGELMR-----QVSLKQVPTAILSRQTAGIRGSCLIVNLPGKP-QSIKVCLDAVMPAIP 153
Query: 153 -ALKALAGSSHP-SPALLKA 170
+ + G+ P +KA
Sbjct: 154 YCIDLIGGAYIDTDPNKVKA 173
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum
cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis
thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A
1uux_A* 1eav_A
Length = 167
Score = 31.5 bits (72), Expect = 0.15
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 38 PIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKD 95
P + + A V+ + D+ + + L+ S++ D+I++ G +D
Sbjct: 28 PRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRD 87
Query: 96 Y----LKDIL---VTDLGASIHFGRVNMKPGKPTTFATL--------GNKLIFCLPGNPV 140
K ++ L + + K T FA L G+ LI +PGNP
Sbjct: 88 VTPEATKKVIERETPGLLFVMM-----QESLKITPFAMLARSAAGIRGSTLIINMPGNP- 141
Query: 141 SAMVTCHLFVLPALK 155
+A+ C +LPALK
Sbjct: 142 NAVAECMEALLPALK 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.34
Identities = 41/260 (15%), Positives = 68/260 (26%), Gaps = 97/260 (37%)
Query: 9 ILEEGNLIGPPELGLLASVGVTSI----TVYKKPIIHILSTGNEL----DEPD------- 53
L G+L E LL T+ + ++ IL E DEP
Sbjct: 10 TLSHGSL----EHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 54 ------AHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGA 107
+ +++P +L CL + YL+ G
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEF----------------ENCYLE-------GN 99
Query: 108 SIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHP---- 163
IH A L + +V + + A + P
Sbjct: 100 DIH------------ALAA-------KLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 164 -SPALLKAKLTADLSL--------DPER--PE----YHRVSLHYNPSEEHLLAYSTGH-- 206
+ AL +A + L + + E Y Y+ L+ +S
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLVGDLIKFSAETLS 196
Query: 207 QLSSKLLSCKSC--NGFAIL 224
+L L + G IL
Sbjct: 197 ELIRTTLDAEKVFTQGLNIL 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.68
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 58/177 (32%)
Query: 35 YKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGD- 93
YK I+ + E + C+D D+ L D II + G
Sbjct: 18 YKD-ILSVF-------EDA--FVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTL 65
Query: 94 --------------KDYLKDILVTD---LGASIHFGRVNMKPGKPTT-FATLGNKLIFCL 135
+ +++++L + L + I +P T + ++L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRL---Y 120
Query: 136 PGNPVSAMVTCHLFVLPALKALAGSSHPSPAL-LKAKLTADLSLDPERPEYHRVSLH 191
N V A V S P L L+ L L L P + V +
Sbjct: 121 NDNQVFA----KYNV----------SRLQPYLKLRQAL---LELRPAK----NVLID 156
Score = 28.7 bits (63), Expect = 2.5
Identities = 29/213 (13%), Positives = 62/213 (29%), Gaps = 33/213 (15%)
Query: 32 ITVYKKPIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS-----CDV---I 83
+T K + LS H + LLL+ L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 84 ISTGSVSMGDK----DYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKL-IFCLPGN 138
+S + S+ D D K + L I ++ +P + + ++L +F P +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVF--PPS 384
Query: 139 -PVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLSLDPERPEYHRVSLH--YNPS 195
+ ++ ++ ++ KL SL ++P+ +S+ Y
Sbjct: 385 AHIPTILLSLIW--------FDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLEL 435
Query: 196 EEHLLAYSTGHQL---SSKLLSCKSCNGFAILP 225
+ L H+ + +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 29.1 bits (66), Expect = 1.2
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 12/140 (8%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPGI 61
G +E G I + L V I V + I + + +DE ++
Sbjct: 108 IEANGXVYVEXGRRITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAAN 167
Query: 62 CRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTD-----LGASIHFGRVNM 116
DLL +S + + T + G Y+ + L D L A + R+ M
Sbjct: 168 MELSLDLLAXLSQSGHKRIE-TLFTNDLDHG--PYISETLRVDPTNDRLSALVEIYRM-M 223
Query: 117 KPGKPTTFAT---LGNKLIF 133
+PG+P T L L F
Sbjct: 224 RPGEPPTREAAESLFENLFF 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 153 ALKALAGSSHPSPAL-LKAKL 172
+LK A S +PAL +KA +
Sbjct: 28 SLKLYADDS--APALAIKATM 46
Score = 26.1 bits (56), Expect = 7.9
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 3 IRKGATILEEG-NLIGP---PELGLLASV 27
++K L+ L P L + A++
Sbjct: 22 LKK----LQASLKLYADDSAPALAIKATM 46
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein,
zincin-like fold, conserved matrix metalloprotease
motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP:
d.92.1.17
Length = 114
Score = 27.3 bits (61), Expect = 2.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 18 PPELGLLASVGVTS------------ITVYKKPIIHILSTGNELDEPDAHVL 57
P LGL + +T I +Y+ I + T +E+ + +
Sbjct: 43 PELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTV 94
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO
biosynthesis, gephyrin function; 1.45A {Escherichia
coli} SCOP: c.57.1.1 PDB: 1di7_A
Length = 195
Score = 27.3 bits (61), Expect = 3.3
Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 29/122 (23%)
Query: 53 DAHVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIH 110
L+ + D+ ++ Q L + SC ++++TG +D VT
Sbjct: 38 TPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRD------VTPDATLAV 91
Query: 111 FGRVNMKPG----------KPTTFATL--------GNKLIFCLPGNPVSAMVTCHLFVLP 152
R PG A L LI LPG P ++ V
Sbjct: 92 ADR--EMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQP-KSIKETLEGVKD 148
Query: 153 AL 154
A
Sbjct: 149 AE 150
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 26.7 bits (59), Expect = 6.7
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 117 KPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADL 176
PG +A K+I L + ++ H +L +S L+ ++
Sbjct: 207 PPGSHQLYA----KMIQKLA--DLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260
Query: 177 SLDP-ERPEYHRVSLHYNPSEEHLLAYSTGHQ 207
SL P + L + H
Sbjct: 261 SLVPRGSMAISDPNSSSVDKLAAALEHHHHHH 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,741,151
Number of extensions: 217980
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 31
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)