RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8242
(248 letters)
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli
[TaxId: 562]}
Length = 149
Score = 99.5 bits (247), Expect = 6e-27
Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 40 IHILSTGNELDEPD------------------------AHVLKPGICRDDPDLLLQCLKS 75
+ + STG+EL P V+ GI RDDP L
Sbjct: 3 VALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIE 62
Query: 76 NLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCL 135
+ DV+IS+G VS+G+ DY K IL +LG + + +KPGKP F L N L
Sbjct: 63 ADSQADVVISSGGVSVGEADYTKTIL-EELGEIAFWK-LAIKPGKPFAFGKLSNSWFCGL 120
Query: 136 PGNPVSAMVTCHLFVLPALKALAGSSHP 163
PGNPVSA +T + V P L L+G++
Sbjct: 121 PGNPVSATLTFYQLVQPLLAKLSGNTAS 148
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 148
Score = 91.4 bits (226), Expect = 7e-24
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 38 PIIHILSTGNELDEPDAHVLKPG-------------------------ICRDDPDLLLQC 72
P + ++STGNE+ P LKPG + RDD + L
Sbjct: 1 PKVAVISTGNEIVPPGNE-LKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKAL 59
Query: 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNKLI 132
++ + DV++ +G S G KD ++ +LG + + ++PGKPT + K +
Sbjct: 60 IEKAVNVGDVVVISGGASGGTKDLTASVI-EELG-EVKVHGIAIQPGKPTIIGVIKGKPV 117
Query: 133 FCLPGNPVSAMVTCHLFVLPALKALAG 159
F LPG P S + L V+P L G
Sbjct: 118 FGLPGYPTSCLTNFTLLVVPLLLRALG 144
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 155
Score = 87.7 bits (216), Expect = 2e-22
Identities = 75/155 (48%), Positives = 93/155 (60%), Gaps = 30/155 (19%)
Query: 38 PIIHILSTGNELDEPDAHVLKPG-------------------------ICRDDPDLLLQC 72
P++ ++STGNEL P+ L PG I D+PD LL
Sbjct: 1 PVVAVMSTGNELLNPEDD-LLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNA 59
Query: 73 LKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLG---- 128
L ++ DVII++G VSMG+KDYLK +L DL A IHFGRV MKPG PTTFATL
Sbjct: 60 LNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGV 119
Query: 129 NKLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHP 163
K+IF LPGNPVSA+VTC+LFV+PAL+ + G P
Sbjct: 120 RKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDP 154
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 144
Score = 83.0 bits (204), Expect = 1e-20
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 36/152 (23%)
Query: 37 KPIIHILSTGNEL-DEPDAHVLKPG-------------------------ICRDDPDLLL 70
KP + I+ TG+EL +EP K G + DD ++
Sbjct: 2 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIK 61
Query: 71 QCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFGRVNMKPGKPTTFATLGNK 130
+ L+ CD+++ TG + GDKDY ++ F +KPG+P + +
Sbjct: 62 ETLEKAKNECDIVLITGGSAFGDKDYAHKF------VNLLFHGTTIKPGRPFGYG----E 111
Query: 131 LIFCLPGNPVSAMVTCHLFVLPALKALAGSSH 162
+F + G PVS +LFV AL + G+ +
Sbjct: 112 KVFIMSGYPVSVFAQFNLFVKHALAKMVGAQN 143
>d2ftsa1 b.85.6.1 (A:654-736) Gephyrin, C-terminal domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 83
Score = 66.9 bits (163), Expect = 3e-15
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 165 PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAIL 224
P ++KA+L+ D+ LDP RPEYHR L ++ E A STG+Q+SS+L+S +S NG +L
Sbjct: 1 PTIIKARLSCDVKLDP-RPEYHRCILTWHHQEPLPWAQSTGNQMSSRLMSMRSANGLLML 59
Query: 225 PKATT-KKTLEKNSLVNVIL 243
P T L K +V+V++
Sbjct: 60 PPKTEQYVELHKGEVVDVMV 79
>d2nqra1 b.85.6.1 (A:327-409) Molybdenum cofactor biosynthesis
protein MoeA, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 83
Score = 60.6 bits (147), Expect = 5e-13
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 165 PALLKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAIL 224
PA + + + L P R ++ R L N + L +TGHQ S S N F +L
Sbjct: 2 PARQRVRTASRLKKTPGRLDFQRGVLQRNA-DGELEVTTTGHQGSHIFSSFSLGNCFIVL 60
Query: 225 PKATTKKTLEKNSLVNVIL 243
+ +E V V
Sbjct: 61 ERDRG--NVEVGEWVEVEP 77
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 62.1 bits (150), Expect = 1e-12
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 13/135 (9%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDYLKDIL----- 101
E HV+ I +++ + + + +AS V++ TG + + D + L
Sbjct: 35 AQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD 94
Query: 102 VTDLGASIHFGRVNMKPGKPTTFATL------GNKLIFCLPGNPVSAMVTCHLFVLPALK 155
G F ++ + +T + LI +PG+ + + P L
Sbjct: 95 REVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLD 154
Query: 156 ALAGSSHPSPALLKA 170
A + P L K
Sbjct: 155 ARTRPCNFHPHLKKG 169
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Length = 155
Score = 60.7 bits (146), Expect = 3e-12
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 49 LDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDYLKDILVTDLG 106
L E V I +DD + + Q + + DV+++ G + +D + + L
Sbjct: 29 LKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSALLD 88
Query: 107 ------------ASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPAL 154
S + T+G K++F +PG+ + + + +LP L
Sbjct: 89 KEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPEL 148
Query: 155 KALAG 159
+
Sbjct: 149 GHITF 153
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 161
Score = 55.5 bits (133), Expect = 2e-10
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 38 PIIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKD 95
P + + A V+ + D+ + + L+ D+I++ G +D
Sbjct: 26 PRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRD 85
Query: 96 YLKDILVTDLGASIHFG--RVNMKPGKPTTFATL--------GNKLIFCLPGNPVSAMVT 145
+ + + + K T FA L G+ LI +PGNP A+
Sbjct: 86 VTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPN-AVAE 144
Query: 146 CHLFVLPALK 155
C +LPALK
Sbjct: 145 CMEALLPALK 154
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor
biosynthesis protein DIP0503 {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 163
Score = 54.8 bits (131), Expect = 4e-10
Identities = 12/124 (9%), Positives = 36/124 (29%), Gaps = 16/124 (12%)
Query: 46 GNELDEPDAHVLKPGICRDDPDLLLQCLKSNLA-SCDVIISTGSVSMGDKDYLKDILVTD 104
+EL + ++ + + D +++ + + L II+ G + K+ + +
Sbjct: 32 SDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRAKNQTPEATASF 91
Query: 105 LGASI----HFGRVNMKPGKPTTFAT----------LGNKLIFCLPGNPVSAMVTCHLFV 150
+ ++ + LI P + + +
Sbjct: 92 IHTRCEGLEQQILIHGSTHTHLAGLSRGIVGVTGRDDHAALIVNAPSSSG-GITDTWAVI 150
Query: 151 LPAL 154
P +
Sbjct: 151 SPVI 154
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Archaeon
Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Length = 176
Score = 53.0 bits (126), Expect = 3e-09
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKK 37
DI KG ++++G +G + LL++VG+ + V++K
Sbjct: 141 DIEKGRLLVKKGERLGFKQTALLSAVGINKVKVFRK 176
>d1wu2a1 b.85.6.1 (A:325-396) Molybdenum cofactor biosynthesis
protein MoeA, C-terminal domain {Pyrococcus horikoshii,
PH1647 [TaxId: 53953]}
Length = 72
Score = 49.9 bits (119), Expect = 3e-09
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 168 LKAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAILPKA 227
+KA L D+ R E+ ++ E+ +A + S L S + N + +P+
Sbjct: 4 VKAILQDDIPSQLGRYEFIKIYY------ENGIARVIKKKGSGILSSLLASNAYLEIPED 57
Query: 228 TTKKTLEKNSLVNVIL 243
+ + V + L
Sbjct: 58 SEG--YRRGEEVWITL 71
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Escherichia
coli [TaxId: 562]}
Length = 171
Score = 52.5 bits (125), Expect = 4e-09
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKK 37
+I GA + G + EL ++AS+G+ + V +K
Sbjct: 136 NISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRK 171
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 50.9 bits (121), Expect = 1e-08
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYK 36
DI++G +L +G +GP E+GLLA+VGVT + V K
Sbjct: 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNK 180
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 46.8 bits (110), Expect = 3e-07
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 51 EPDAHVLKPGICRDDPDLLLQCLKSNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIH 110
A+ + P + + L+ ++I++TG +D + +
Sbjct: 40 TISAYKIVPDEIEEIKETLIDWCDEK--ELNLILTTGGTGFAPRDVTPEATKEVIEREAP 97
Query: 111 FG----------RVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKAL 157
+ G LI LPG+ C F+LPAL
Sbjct: 98 GMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSK-KGSQECFQFILPALPHA 153
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis
protein MoeA, N-terminal and linker domains {Pyrococcus
horikoshii, PH1647 [TaxId: 53953]}
Length = 175
Score = 46.0 bits (108), Expect = 7e-07
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 2 DIRKGATILEEGNLIGPPELGLLASVGVTSITV 34
D++KG +L +G ++ P ++ +L ++G+ + V
Sbjct: 142 DVKKGEVVLRKGTILRPQDVAMLKALGIKKVPV 174
>d1uz5a1 b.85.6.1 (A:329-402) Molybdenum cofactor biosynthesis
protein MoeA, C-terminal domain {Archaeon Pyrococcus
horikoshii, PH0582 [TaxId: 53953]}
Length = 74
Score = 38.6 bits (90), Expect = 5e-05
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 169 KAKLTADLSLDPERPEYHRVSLHYNPSEEHLLAYSTGHQLSSKLLSCKSCNGFAILPKAT 228
A+L + R ++ V L E LA S + S +GF +P+
Sbjct: 5 VARLKHKVFSVKGRRQFLPVKL------EGDLAVPILKG-SGAVTSFIDADGFVEIPETV 57
Query: 229 TKKTLEKNSLVNVIL 243
L++ V V L
Sbjct: 58 ES--LDEGEEVEVTL 70
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
70863]}
Length = 173
Score = 35.9 bits (82), Expect = 0.002
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 61 ICRDDPDLLLQCLKSNLAS--CDVIISTGSVSMGDKDYLKDILVT----------DLGAS 108
+ D+ D++ L C +I++TG +D + +L +
Sbjct: 45 VIPDEQDVIETTLIKMADEQDCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRA 104
Query: 109 IHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALK 155
V T G+ LI LPG P ++ C V PA+
Sbjct: 105 ESLKFVPTAILSRQTAGLRGDSLIVNLPGKP-KSIRECLDAVFPAIP 150
>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
Length = 190
Score = 31.5 bits (71), Expect = 0.052
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 55 HVLKPGICRDDPDLLLQCLK--SNLASCDVIISTGSVSMGDKDYLKDILVTDLGASIHFG 112
L+ + D+ ++ Q L + SC ++++TG +D D + +
Sbjct: 39 FELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGF 98
Query: 113 ----RVNMKPGKPTTFAT------LGNKLIFCLPGNPVSAMVTCHLFVLPAL 154
R PT + LI LPG P ++ V A
Sbjct: 99 GEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQP-KSIKETLEGVKDAE 149
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062
{Acidothermus cellulolyticus [TaxId: 28049]}
Length = 113
Score = 28.5 bits (64), Expect = 0.32
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 18 PPELGLLASVGVTS------------ITVYKKPIIHILSTGNELDEPDAHVL 57
P LGL + +T I +Y+ I + T +E+ + +
Sbjct: 42 PELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTV 93
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 26.8 bits (58), Expect = 2.4
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 99 DILVTDLGASIHFGRVNMKPGKPTTFATLGNKLIFCLPGNPVSAMVTCH 147
+V+D+G H+G + + +P F T G + A +
Sbjct: 30 GTIVSDIGFFRHYGVLFARADQPFGFLTSAG---CSSFGYGIPAAIGAQ 75
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 25.5 bits (56), Expect = 3.0
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 32 ITVYKKPIIHILSTGNELDEPDAHVL 57
I +Y + + G + + +
Sbjct: 67 IALYYGSFLEVAGEGFDWEAEVWETM 92
>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase,
C-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Length = 366
Score = 25.9 bits (56), Expect = 5.3
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 1/67 (1%)
Query: 118 PGKPTTFATLGNKLIFCLPGNPVSAMVTCHLFVLPALKALAGSSHPSPALLKAKLTADLS 177
G P T L L +P + + +PA K +
Sbjct: 98 RGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNP-MLGHRGCR 156
Query: 178 LDPERPE 184
L PE
Sbjct: 157 LGITYPE 163
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 161
Score = 24.8 bits (54), Expect = 7.7
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 39 IIHILSTGNELDEPDAHVLKPGICRDDPDLLLQCLKSNLASCDVII 84
IH+ L E D ++ G + L + +A + I
Sbjct: 46 TIHLFDDERGLQETDNFAVRDGFVYYGSVVKLVDSVTGIALPRLRI 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,697
Number of extensions: 40330
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 25
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)