BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8243
(624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 483 bits (1243), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/367 (67%), Positives = 271/367 (73%), Gaps = 45/367 (12%)
Query: 214 PIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQ 273
P+ + D +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T
Sbjct: 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHN 83
Query: 274 DVHISEAIYPE-----AVNMVR----------------------------------LYLV 294
I+E IYPE AVNM R +L
Sbjct: 84 RNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLR 143
Query: 295 FLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ 354
FLESPDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ
Sbjct: 144 FLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ 203
Query: 355 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXVY 414
INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+E VY
Sbjct: 204 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVY 263
Query: 415 HPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEP 474
HPQLAYCVVQFLEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP
Sbjct: 264 HPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEP 317
Query: 475 AEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRN 534
+EF K+M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRN
Sbjct: 318 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRN 377
Query: 535 SKTHWNK 541
SKTHWNK
Sbjct: 378 SKTHWNK 384
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/359 (69%), Positives = 268/359 (74%), Gaps = 45/359 (12%)
Query: 222 DASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAI 281
D +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T I+E I
Sbjct: 3 DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 62
Query: 282 YPE-----AVNMVR----------------------------------LYLVFLESPDFQ 302
YPE AVNM R +L FLESPDFQ
Sbjct: 63 YPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 122
Query: 303 PNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 362
PNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF
Sbjct: 123 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 182
Query: 363 IYETEHHNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXVYHPQLAYCV 422
IYETEHHNGIAELLEILGSIINGFALPLK+E VYHPQLAYCV
Sbjct: 183 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 242
Query: 423 VQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMV 482
VQFLEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP+EF K+M
Sbjct: 243 VQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIME 296
Query: 483 PLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 541
PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHWNK
Sbjct: 297 PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK 355
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/353 (69%), Positives = 267/353 (75%), Gaps = 45/353 (12%)
Query: 228 RDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPE--- 284
+++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T I+E IYPE
Sbjct: 5 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVH 64
Query: 285 --AVNMVR----------------------------------LYLVFLESPDFQPNIAKK 308
AVNM R +L FLESPDFQPNIAKK
Sbjct: 65 MFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 124
Query: 309 YIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 368
YIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH
Sbjct: 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 184
Query: 369 HNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXVYHPQLAYCVVQFLEK 428
HNGIAELLEILGSIINGFALPLK+E VYHPQLAYCVVQFLEK
Sbjct: 185 HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK 244
Query: 429 DPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQI 488
D +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP+EF K+M PLF Q+
Sbjct: 245 DSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 489 AKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 541
AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHWNK
Sbjct: 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/364 (67%), Positives = 267/364 (73%), Gaps = 45/364 (12%)
Query: 213 NPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTA 272
P+ + D +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T
Sbjct: 35 QPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITH 94
Query: 273 QDVHISEAIYPE-----AVNMVR----------------------------------LYL 293
I+E IYPE AVNM R +L
Sbjct: 95 NRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL 154
Query: 294 VFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 353
FLESPDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK
Sbjct: 155 RFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 214
Query: 354 QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXV 413
QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+E V
Sbjct: 215 QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSV 274
Query: 414 YHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIE 473
YHPQLAYCVVQFLEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIE
Sbjct: 275 YHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIE 328
Query: 474 PAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYR 533
P+EF K+M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYR
Sbjct: 329 PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYR 388
Query: 534 NSKT 537
NSKT
Sbjct: 389 NSKT 392
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/353 (68%), Positives = 261/353 (73%), Gaps = 45/353 (12%)
Query: 228 RDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPE--- 284
+++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL E VEY+T I+E IYPE
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 285 --AVNMVR----------------------------------LYLVFLESPDFQPNIAKK 308
AVN R +L FLESPDFQPNIAKK
Sbjct: 61 XFAVNXFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK 120
Query: 309 YIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 368
YIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH
Sbjct: 121 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH 180
Query: 369 HNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXVYHPQLAYCVVQFLEK 428
HNGIAELLEILGSIINGFALPLK+E VYHPQLAYCVVQFLEK
Sbjct: 181 HNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK 240
Query: 429 DPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQI 488
D +LTEPVV LLK+WPKTHSPKE V FLNELEEILDVIEP+EF K+ PLF Q+
Sbjct: 241 DSTLTEPVVXALLKYWPKTHSPKE------VXFLNELEEILDVIEPSEFVKIXEPLFRQL 294
Query: 489 AKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 541
AKCVSS HFQVAERALYYWNNEY +LI+DNA I+PI FP+LYRNSKTHWNK
Sbjct: 295 AKCVSSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNK 347
>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|D Chain D, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|I Chain I, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|J Chain J, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 240
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 250 LSELK-WKEVKRTALLEMVEYLTAQDVHISEAIYPE-------AVNMVRLYLVFLESPDF 301
L+E K E K A MV Y AQD+ +++ + P A+N Y L SPD
Sbjct: 138 LAEFKTGAERKEAAESTMVAYKAAQDIALAD-LAPTHPIRLGLALNFSVFYYEILNSPDK 196
Query: 302 QPNIAKKYIDQ 312
N+AK+ D+
Sbjct: 197 ACNLAKQAFDE 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,233,124
Number of Sequences: 62578
Number of extensions: 609156
Number of successful extensions: 1242
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 16
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)