Query psy8243
Match_columns 624
No_of_seqs 251 out of 434
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:22:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085|consensus 100.0 3E-133 7E-138 1049.7 35.2 396 118-580 43-456 (457)
2 PF01603 B56: Protein phosphat 100.0 9E-109 2E-113 888.5 27.9 388 120-577 2-409 (409)
3 PLN00122 serine/threonine prot 99.9 2.7E-25 5.9E-30 214.5 8.5 116 427-581 35-168 (170)
4 KOG2085|consensus 99.6 1.9E-14 4.1E-19 153.7 11.8 85 219-304 47-131 (457)
5 PF01603 B56: Protein phosphat 99.3 3.2E-12 6.9E-17 139.2 10.0 77 219-296 4-82 (409)
6 PF05918 API5: Apoptosis inhib 88.5 32 0.00069 40.1 18.8 89 414-508 241-341 (556)
7 PF01602 Adaptin_N: Adaptin N 87.7 3.8 8.3E-05 45.4 10.7 172 318-508 344-520 (526)
8 PF14500 MMS19_N: Dos2-interac 80.5 29 0.00062 36.5 12.8 173 318-506 4-212 (262)
9 PF12460 MMS19_C: RNAPII trans 80.4 68 0.0015 35.5 16.3 202 313-527 189-411 (415)
10 PLN00122 serine/threonine prot 79.4 3.1 6.7E-05 41.3 4.9 20 120-139 48-67 (170)
11 PF12348 CLASP_N: CLASP N term 65.3 1.1E+02 0.0024 30.2 12.3 193 323-526 17-218 (228)
12 PF08767 CRM1_C: CRM1 C termin 56.6 2.4E+02 0.0052 30.4 13.7 78 409-508 109-190 (319)
13 KOG1991|consensus 56.0 1.5E+02 0.0033 36.8 13.0 151 283-442 343-509 (1010)
14 PF01602 Adaptin_N: Adaptin N 54.8 2.1E+02 0.0046 31.7 13.5 161 311-490 265-425 (526)
15 PF04499 SAPS: SIT4 phosphatas 53.2 2.5E+02 0.0054 32.2 13.8 119 265-384 11-148 (475)
16 cd07920 Pumilio Pumilio-family 49.1 3.3E+02 0.0071 28.3 13.7 48 430-485 214-261 (322)
17 PF12348 CLASP_N: CLASP N term 48.3 46 0.001 32.9 6.3 88 459-549 25-116 (228)
18 COG5656 SXM1 Importin, protein 46.5 2.1E+02 0.0045 34.9 11.9 155 282-441 340-505 (970)
19 cd00020 ARM Armadillo/beta-cat 44.9 98 0.0021 26.4 7.1 44 303-346 39-82 (120)
20 PF00620 RhoGAP: RhoGAP domain 43.1 2.3E+02 0.0051 26.0 9.8 51 310-363 72-122 (151)
21 PF12783 Sec7_N: Guanine nucle 39.5 1E+02 0.0022 29.5 7.0 86 346-433 65-151 (168)
22 PF04388 Hamartin: Hamartin pr 36.5 6.9E+02 0.015 30.0 14.4 152 314-492 5-161 (668)
23 PF03378 CAS_CSE1: CAS/CSE pro 35.1 1.8E+02 0.0039 32.9 9.0 118 312-430 25-149 (435)
24 KOG0889|consensus 31.7 2E+02 0.0044 40.4 9.7 85 261-353 316-400 (3550)
25 smart00582 RPR domain present 29.5 82 0.0018 28.4 4.3 73 432-510 29-108 (121)
26 PF08167 RIX1: rRNA processing 27.9 3E+02 0.0065 26.6 8.2 80 313-392 67-151 (165)
27 cd00020 ARM Armadillo/beta-cat 26.2 2.1E+02 0.0045 24.3 6.1 71 314-385 8-79 (120)
28 COG5215 KAP95 Karyopherin (imp 26.1 1.7E+02 0.0037 34.7 6.8 98 480-577 260-388 (858)
29 PF11728 DUF939_C: DUF939 C-te 25.9 3.3E+02 0.0072 26.7 8.1 131 261-403 18-151 (167)
30 cd03572 ENTH_epsin_related ENT 23.6 1.6E+02 0.0034 27.9 5.1 60 459-521 19-82 (122)
31 KOG0213|consensus 22.2 7.3E+02 0.016 30.8 11.0 156 306-492 793-956 (1172)
32 PHA03080 putative virion core 21.7 9.3E+02 0.02 26.9 11.0 152 279-470 4-162 (366)
33 PTZ00429 beta-adaptin; Provisi 21.6 1.5E+03 0.033 27.6 17.2 135 353-507 404-541 (746)
No 1
>KOG2085|consensus
Probab=100.00 E-value=3.4e-133 Score=1049.70 Aligned_cols=396 Identities=62% Similarity=1.017 Sum_probs=383.5
Q ss_pred cccccCCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhcc
Q psy8243 118 IQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLV 197 (624)
Q Consensus 118 ~~~~~f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~ 197 (624)
...++|+|||+++|++||++|++|||++||| +||++|+++||+||+||+||+||++++++++||.+|+++++|+++|
T Consensus 43 ~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF-~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~n-- 119 (457)
T KOG2085|consen 43 EPLPSLKDVPSSEQKELFIKKLEQCCVLFDF-NDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVN-- 119 (457)
T ss_pred eeCCccCcCChhHhHHHHHHHHHhhheeeec-cChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH--
Confidence 4566899999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCccc
Q psy8243 198 AYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHI 277 (624)
Q Consensus 198 ~~~~~~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~ 277 (624)
|||+|||..||+|. | | +||||.
T Consensus 120 ------ifR~lpp~~n~~~~--------------------------d----~----------------------eedEp~ 141 (457)
T KOG2085|consen 120 ------IFRTLPPSVNPTGF--------------------------D----Y----------------------EEDEPV 141 (457)
T ss_pred ------hhccCCcccCCCcC--------------------------C----c----------------------cccCcc
Confidence 99999999998752 3 4 899999
Q ss_pred ccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy8243 278 SEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 357 (624)
Q Consensus 278 ~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~n 357 (624)
.|++|||||+||++|+||+.||+|+|++||+|||++||++|+++|||||||||++|||+||||||||+++|+|||++|||
T Consensus 142 le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNN 221 (457)
T KOG2085|consen 142 LEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINN 221 (457)
T ss_pred cCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHH
Q psy8243 358 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVV 437 (624)
Q Consensus 358 if~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi 437 (624)
+||+||||+++||||+|||||+||||||||+||||||+.|+.|||||||++++++.||+||+|||+||++|||+|++.||
T Consensus 222 if~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VI 301 (457)
T KOG2085|consen 222 IFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVI 301 (457)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhh
Q psy8243 438 KCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLIT 517 (624)
Q Consensus 438 ~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~ 517 (624)
+||+||||+|||+|| |||||||||||++++|.+|++++.|||++||+|++|+|||||||||++|||++|+++|+
T Consensus 302 rglLK~WP~tnS~KE------VmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~ 375 (457)
T KOG2085|consen 302 RGLLKYWPKTNSSKE------VMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLIS 375 (457)
T ss_pred HHHHHhcCCCCCcce------eeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHhhhccchHHHHHHHHH--------------hhH----hHhhhhhHHHHHHHHHHHHHHHHHHhC
Q psy8243 518 DNATVIVPIMFPALYRNSKTHWNKEKERMRDR--------------DLT----WINIGEKERMRDRDLTWSRVEALAMKN 579 (624)
Q Consensus 518 ~n~~~I~PiI~paL~~~sk~HWn~tVr~la~n--------------~~~----~~~~~e~~~~~~r~~~W~~Ie~~A~~~ 579 (624)
+|+++|+|||||+||+|+++|||++|+++++| +|+ .++.++++.+++|++.|+++|++|+.+
T Consensus 376 ~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~~~~~~re~~W~~le~~~~~~ 455 (457)
T KOG2085|consen 376 QNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEKETEEKREETWKRLEELAAEN 455 (457)
T ss_pred hccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 343 245677788999999999999999987
Q ss_pred C
Q psy8243 580 P 580 (624)
Q Consensus 580 ~ 580 (624)
+
T Consensus 456 ~ 456 (457)
T KOG2085|consen 456 P 456 (457)
T ss_pred C
Confidence 5
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=8.5e-109 Score=888.46 Aligned_cols=388 Identities=61% Similarity=1.031 Sum_probs=332.8
Q ss_pred cccCCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCC--CCCChhhHHHHHHHHHhhcc
Q psy8243 120 SILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQD--VHISEAIYPEAVNMVRLYLV 197 (624)
Q Consensus 120 ~~~f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~--~~lte~i~~e~v~Mv~~N~~ 197 (624)
+++|+||+++++++||++||++||++||| +||.+|+++||+||+||+||++|+++++ +.++|++|+++++||++|
T Consensus 2 lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~N-- 78 (409)
T PF01603_consen 2 LPSLPDVPPPERQELFLKKLQQCCVIFDF-SDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISAN-- 78 (409)
T ss_dssp -----SS-SSSCSCHTTHHHHHHHHHSTT-SSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHH--
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCEeeC-CCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh--
Confidence 46899999999999999999999999999 7999999999999999999999999988 899999999999999999
Q ss_pred ccccccccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCccc
Q psy8243 198 AYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHI 277 (624)
Q Consensus 198 ~~~~~~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~ 277 (624)
|||++||.+++. +| + ++|+++
T Consensus 79 ------ifR~lP~~~~~~---------------------------~~----~----------------------~~d~~~ 99 (409)
T PF01603_consen 79 ------IFRPLPPIPNPS---------------------------FD----P----------------------DDDEPF 99 (409)
T ss_dssp ------H-S-----SS-----------------------------S-----G----------------------GG----
T ss_pred ------ccCCCCCccccc---------------------------CC----c----------------------cccccc
Confidence 999999986543 23 2 788999
Q ss_pred ccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy8243 278 SEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 357 (624)
Q Consensus 278 ~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~n 357 (624)
.|++||||++||++|++|+.++++++ +++|||++|+.+|+++|+|+|||||++|+++|||||+||+++|++||++|+|
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~ 177 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINN 177 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHH
Q psy8243 358 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVV 437 (624)
Q Consensus 358 if~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi 437 (624)
+|++|+||+++|+||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||+||+||+++|++|||+|+..++
T Consensus 178 ~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i 257 (409)
T PF01603_consen 178 IFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI 257 (409)
T ss_dssp HHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH
T ss_pred HHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhh
Q psy8243 438 KCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLIT 517 (624)
Q Consensus 438 ~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~ 517 (624)
+||+||||+||++|| |+||+|+++|++.+++++|.+++.++|++||+|++|+|+|||||||++|+|++++++++
T Consensus 258 ~~llk~WP~t~s~Ke------v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~ 331 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKE------VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS 331 (409)
T ss_dssp HHHHHHS-SS-HHHH------HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH
T ss_pred HHHHHhCCCCCchhH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHhhhccchHHHHHHHHHhhH------------------hHhhhhhHHHHHHHHHHHHHHHHHH
Q psy8243 518 DNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLT------------------WINIGEKERMRDRDLTWSRVEALAM 577 (624)
Q Consensus 518 ~n~~~I~PiI~paL~~~sk~HWn~tVr~la~n~~~------------------~~~~~e~~~~~~r~~~W~~Ie~~A~ 577 (624)
+|++.|+|+++|+|++++++|||++||++|++.+. .++.++++++++|+++|++|+++|+
T Consensus 332 ~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 332 QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAREKKRKKKWKKIEEAAK 409 (409)
T ss_dssp CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHSSHHHHHHHTT-S----
T ss_pred hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999998332 1233445667899999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=99.92 E-value=2.7e-25 Score=214.49 Aligned_cols=116 Identities=34% Similarity=0.565 Sum_probs=104.9
Q ss_pred hhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy8243 427 EKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYY 506 (624)
Q Consensus 427 eKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~ 506 (624)
...+.+....+++|.+|||++++.|| .+||++| ||||||++
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~------~lfl~kl---------------------------------VAERAL~l 75 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQ------NLFVRKL---------------------------------VAERALFL 75 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHH------HHHHHHH---------------------------------HHHHHHHH
Confidence 46788899999999999999999999 9999999 99999999
Q ss_pred hcchhhhhhhhcccccccccchHHHHHhhhccchHHHHHHHHH--------------hhHh----HhhhhhHHHHHHHHH
Q psy8243 507 WNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDR--------------DLTW----INIGEKERMRDRDLT 568 (624)
Q Consensus 507 w~Ne~~l~li~~n~~~I~PiI~paL~~~sk~HWn~tVr~la~n--------------~~~~----~~~~e~~~~~~r~~~ 568 (624)
|||++|+++|.+|+++|+|||||+||+++++|||++|+++++| +|+. ++.++++.+++|+++
T Consensus 76 WnNe~i~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~ 155 (170)
T PLN00122 76 WNNDHIVNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREAT 155 (170)
T ss_pred HccHHHHHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 3332 233455678899999
Q ss_pred HHHHHHHHHhCCC
Q psy8243 569 WSRVEALAMKNPH 581 (624)
Q Consensus 569 W~~Ie~~A~~~~~ 581 (624)
|++|+++|++++.
T Consensus 156 W~~le~~A~~~~~ 168 (170)
T PLN00122 156 WKRLEEAAAAKAI 168 (170)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998763
No 4
>KOG2085|consensus
Probab=99.55 E-value=1.9e-14 Score=153.67 Aligned_cols=85 Identities=42% Similarity=0.758 Sum_probs=79.7
Q ss_pred cccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccC
Q psy8243 219 LFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLES 298 (624)
Q Consensus 219 ~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~S 298 (624)
+|+|||.++|++||++|++|||++||| +||++|+++|||||+||+||+||+.+..+.++|..+|++.-|...++....+
T Consensus 47 ~~~dv~~se~~~Lf~~Kl~~Cc~~FDF-~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nifR~lp 125 (457)
T KOG2085|consen 47 SLKDVPSSEQKELFIKKLEQCCVLFDF-NDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIFRTLP 125 (457)
T ss_pred ccCcCChhHhHHHHHHHHHhhheeeec-cChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCC
Confidence 689999999999999999999999999 5999999999999999999999999999999999999999999998877777
Q ss_pred CCCChh
Q psy8243 299 PDFQPN 304 (624)
Q Consensus 299 p~f~p~ 304 (624)
|..+|+
T Consensus 126 p~~n~~ 131 (457)
T KOG2085|consen 126 PSVNPT 131 (457)
T ss_pred cccCCC
Confidence 776664
No 5
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=99.33 E-value=3.2e-12 Score=139.17 Aligned_cols=77 Identities=42% Similarity=0.770 Sum_probs=67.1
Q ss_pred cccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCC--cccccchhHHHHHHHHHHHHhc
Q psy8243 219 LFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQD--VHISEAIYPEAVNMVRLYLVFL 296 (624)
Q Consensus 219 ~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeD--e~~~E~~WpHLqlVYe~flrfv 296 (624)
.|+||+++++++||++||++||++||| +||.+|+++||+||+||+||+||++..+ ..+.|+.++.+.-|...++.+-
T Consensus 4 ~l~dv~~~e~~~lf~~Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~ 82 (409)
T PF01603_consen 4 SLPDVPPPERQELFLKKLQQCCVIFDF-SDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRP 82 (409)
T ss_dssp ---SS-SSSCSCHTTHHHHHHHHHSTT-SSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEeeC-CCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCC
Confidence 478999999999999999999999999 8999999999999999999999999888 8899999999999999877554
No 6
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.51 E-value=32 Score=40.10 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=53.3
Q ss_pred chhhHHHHHHH---HHhhCCCChHHHHHHHhccCCCC---CCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHH
Q psy8243 414 YHPQLAYCVVQ---FLEKDPSLTEPVVKCLLKFWPKT---HSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQ 487 (624)
Q Consensus 414 Y~~qL~~cv~q---FleKDpsLt~~vi~~LLk~WP~t---ns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~ 487 (624)
.-.++.+|+.+ |+.+....+..+--.+-+.-|+- ....+ +-+|.-+.|+...+...+-..++..+|..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~k------l~lLk~lAE~s~~~~~~d~~~~L~~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRK------LDLLKLLAELSPFCGAQDARQLLPSIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HH------HHHHHHHHHHHTT----THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHH------HHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 34577788877 66666665544333334455543 33555 88999999999999887888889999999
Q ss_pred HHHHh------CCCcHHHHHHHHHhhc
Q psy8243 488 IAKCV------SSSHFQVAERALYYWN 508 (624)
Q Consensus 488 La~Ci------~S~hfqVAErAL~~w~ 508 (624)
|-+.+ .+.+|-..|..|+.+-
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh 341 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFH 341 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHH
Confidence 86544 3457778888887653
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=87.68 E-value=3.8 Score=45.40 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=101.4
Q ss_pred Hhhhc-CCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHH
Q psy8243 318 LLDLF-DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKF 396 (624)
Q Consensus 318 Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~ 396 (624)
|+.-+ +..|+.-|..+-..+..+-.++..--....+.+ .+++.... ..-..|+...+..++... ..+++
T Consensus 344 L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l----~~ll~~~~-~~~~~~~~~~i~~ll~~~-~~~~~---- 413 (526)
T PF01602_consen 344 LLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTL----LKLLEISG-DYVSNEIINVIRDLLSNN-PELRE---- 413 (526)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHH----HHHHHCTG-GGCHCHHHHHHHHHHHHS-TTTHH----
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHH----HHhhhhcc-ccccchHHHHHHHHhhcC-hhhhH----
Confidence 33334 344554454444445555555544333332333 33332221 223455666666666553 12222
Q ss_pred HHHHHhhhcccccccccchhhHHHHHHHHHhhCCC--ChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccCh
Q psy8243 397 FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPS--LTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEP 474 (624)
Q Consensus 397 Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDps--Lt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p 474 (624)
...+.|+-+.........-.-..+|+..|.+..+. .+..+++.+.+.|...+..-+ ...|..+..+....+.
T Consensus 414 ~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk------~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 414 KILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVK------LQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHH------HHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHH------HHHHHHHHHHHhhCCc
Confidence 22334444444444445677888999999888877 788899999999887655555 7788888888866655
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHhhc
Q psy8243 475 AEFQKVMVPLFHQIAKCVS--SSHFQVAERALYYWN 508 (624)
Q Consensus 475 ~~f~~v~~pLFk~La~Ci~--S~hfqVAErAL~~w~ 508 (624)
++..+ .+...+..+.. |.|+.|-+||.++|.
T Consensus 488 ~~~~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 488 NEVQN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp TTHHH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred hhhHH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 44433 55666666667 999999999999985
No 8
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.49 E-value=29 Score=36.49 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=95.5
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhc-cCCcccHHHHHHHHHHHHhcCCCCChHHHHH
Q psy8243 318 LLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEILGSIINGFALPLKDEHKF 396 (624)
Q Consensus 318 Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye-~e~hnGIaELLeILgSIInGFa~PLKeEhk~ 396 (624)
|-+-+.|+|+..|..-..+|..+-++..... +.++-.+.+.+|..+ -+++.++.+.|.-+..+++-=..+ ++....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-PESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-hhhHHH
Confidence 4455778888888877777777766655321 233333455555444 456677777777777666321211 222222
Q ss_pred HH--------------------HHHhhhccccc--ccccchhhHHHHHHHHH--hhCCCC---hHHHHHHHhccCCCCCC
Q psy8243 397 FL--------------------LKVLLPLHKVK--SLSVYHPQLAYCVVQFL--EKDPSL---TEPVVKCLLKFWPKTHS 449 (624)
Q Consensus 397 Fl--------------------~~VLLPLHk~k--~l~~Y~~qL~~cv~qFl--eKDpsL---t~~vi~~LLk~WP~tns 449 (624)
++ .+++.=|.... .+......+.+.+++.+ ||||+. +..+++.+++.||.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 21 12222221111 12333456677777777 799985 45677888899995
Q ss_pred cccccccccchHHHHHHHHHhccChHHHHH--------HHHHHHHHHHHHhCCCcHHHHHHHHHh
Q psy8243 450 PKESVVYSQVMFLNELEEILDVIEPAEFQK--------VMVPLFHQIAKCVSSSHFQVAERALYY 506 (624)
Q Consensus 450 ~KEs~~~~~VlFLnELeeILe~~~p~~f~~--------v~~pLFk~La~Ci~S~hfqVAErAL~~ 506 (624)
.+ |.+++=+++...=|.+|.. -...|=..|..|+.|.+ ..|+-|+-+
T Consensus 158 -~~--------~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~ 212 (262)
T PF14500_consen 158 -SE--------FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPL 212 (262)
T ss_pred -ch--------hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHH
Confidence 22 4445556653222333321 34567778889998755 456655443
No 9
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.43 E-value=68 Score=35.50 Aligned_cols=202 Identities=18% Similarity=0.196 Sum_probs=122.6
Q ss_pred HHHHHHhhh-cCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCCh
Q psy8243 313 KFVLQLLDL-FDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 391 (624)
Q Consensus 313 ~Fi~~Ll~l-fdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLK 391 (624)
.++.+++.+ ..++|+..|......|-.+-.||..-- .+...+...+..+ ........-...++++.-|.+|...-..
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 478888887 677788889888888888888864422 3333333333322 2222223334566777666666544333
Q ss_pred HHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCC-----------------CChHHHHHHHhccCCCCCCccccc
Q psy8243 392 DEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDP-----------------SLTEPVVKCLLKFWPKTHSPKESV 454 (624)
Q Consensus 392 eEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDp-----------------sLt~~vi~~LLk~WP~tns~KEs~ 454 (624)
+....+ ...|+-|...+.+ ....+.....++...+ ++...++..|+..+-.++....
T Consensus 267 ~~~~~~-~~~L~~lL~~~~~---g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k-- 340 (415)
T PF12460_consen 267 PLATEL-LDKLLELLSSPEL---GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK-- 340 (415)
T ss_pred chHHHH-HHHHHHHhCChhh---HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH--
Confidence 333333 3446667766443 3344444444443311 2334455555555554444333
Q ss_pred ccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc---chhhhhhhhcccccccccc
Q psy8243 455 VYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN---NEYFMNLITDNATVIVPIM 527 (624)
Q Consensus 455 ~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~---Ne~~l~li~~n~~~I~PiI 527 (624)
.-+|--+..++..++.+-...-...|+..+-+|++.++..|-..+|..+. .+. -.++.+|-+.++|.+
T Consensus 341 ----~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 341 ----SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRL 411 (415)
T ss_pred ----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999988888887643 111 345555555544433
No 10
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=79.38 E-value=3.1 Score=41.26 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.5
Q ss_pred cccCCCCChhhhHHHHHHHH
Q psy8243 120 SILFADASSEHRDELFVQKI 139 (624)
Q Consensus 120 ~~~f~d~~~~~~~~Lf~~Kl 139 (624)
.++|+|+|.++|++||++||
T Consensus 48 l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 48 LPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred ccCCCCCCchHHHHHHHHHH
Confidence 34899999999999999999
No 11
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=65.29 E-value=1.1e+02 Score=30.18 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHH---HHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHH
Q psy8243 323 DSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQIN---NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFF 397 (624)
Q Consensus 323 dSeDpRERd~LktiLhrIY~Kf--~~lR~fIRk~I~---nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~F 397 (624)
.+.|=.+|..-.+-|+++-... ...+..+...+. ..+..-+ .+.+..-+.+.+.+++.+..+....++.. ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 5566677766556666665444 122222222222 2222211 13344456678888888888766665543 444
Q ss_pred HHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccC--hH
Q psy8243 398 LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIE--PA 475 (624)
Q Consensus 398 l~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~--p~ 475 (624)
+...|+-+..... ......-..|+..+++.-+-....++..+...+---|+.=- ..-++-+..++...+ ..
T Consensus 95 ~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR------~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVR------EECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHH------HHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHH------HHHHHHHHHHHHHccchHh
Confidence 4556666666543 34577788888888887661222224555444433222222 445566777777666 34
Q ss_pred HHHH--HHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhccccccccc
Q psy8243 476 EFQK--VMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPI 526 (624)
Q Consensus 476 ~f~~--v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~I~Pi 526 (624)
.+.. ....+.+.+.+|++..+..|=+.|-..|.. +.+.+.+....++-.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~--l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWA--LYSHFPERAESILSM 218 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH--HHHHH-HHH------
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHHCCHhhccchhc
Confidence 4433 347789999999999999998888877652 223444444444433
No 12
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=56.65 E-value=2.4e+02 Score=30.41 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=45.0
Q ss_pred cccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHH----HHhccChHHHHHHHHHH
Q psy8243 409 KSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEE----ILDVIEPAEFQKVMVPL 484 (624)
Q Consensus 409 k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELee----ILe~~~p~~f~~v~~pL 484 (624)
+.+......+..|....+.+|-.-.+..-..+ .-+|+-+.+ .+-.+++++|..+
T Consensus 109 ~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~f------------------f~LL~~i~~~~f~~l~~lp~~~f~~~---- 166 (319)
T PF08767_consen 109 PQVPQILEAVFECTLPMINKDFEEYPEHRVNF------------------FKLLRAINEHCFPALLQLPPEQFKLV---- 166 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHH------------------HHHHHHHHHHHTHHHHHS-HHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHH------------------HHHHHHHHHHhHHHHHcCCHHHHHHH----
Confidence 44455566667777777766544333222211 112222211 1334677777544
Q ss_pred HHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 485 FHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 485 Fk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
..-+..++.+++..|++.+|....
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILL 190 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 466778889999999999998754
No 13
>KOG1991|consensus
Probab=56.05 E-value=1.5e+02 Score=36.81 Aligned_cols=151 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHH---HhhhcCCCCHHHHHHHHHHHHHHHhhhhhhh-----HHHHHH
Q psy8243 283 PEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQ---LLDLFDSEDPRERDFLKTTLHRIYGKFLGLR-----AYIRKQ 354 (624)
Q Consensus 283 pHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~---Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR-----~fIRk~ 354 (624)
||||.+.+=..+-+-+..-+..-+=.-=...+|.+ +.+-+.|||..=.+++-+ ....| .-|-.-
T Consensus 343 PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~--------~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 343 PHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT--------LVSKRGKETLPKILSF 414 (1010)
T ss_pred hHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH--------HHHhcchhhhhhHHHH
Q ss_pred HHHHHHHhhhc---cCCcccHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHh--
Q psy8243 355 INNIFYRFIYE---TEHHNGIAELLEILGSIINGF--ALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-- 427 (624)
Q Consensus 355 I~nif~~FIye---~e~hnGIaELLeILgSIInGF--a~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFle-- 427 (624)
+.++|.+|--. ....--..-.|..+||+..-. ..|.|.++..|+.+.++|..+++.... ..+-.+.+.+|.+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L-rarac~vl~~~~~~d 493 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL-RARACWVLSQFSSID 493 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH-HHHHHHHHHHHHhcc
Q ss_pred -hCCCChHHHHHHHhc
Q psy8243 428 -KDPSLTEPVVKCLLK 442 (624)
Q Consensus 428 -KDpsLt~~vi~~LLk 442 (624)
||+......++.-.+
T Consensus 494 f~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 494 FKDPNNLSEALELTHN 509 (1010)
T ss_pred CCChHHHHHHHHHHHH
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=54.78 E-value=2.1e+02 Score=31.72 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=94.8
Q ss_pred CHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCC
Q psy8243 311 DQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 390 (624)
Q Consensus 311 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PL 390 (624)
-+.++..|+.++.+.|++=|-.....|+.|-.+. ...+...-...| ++...++..--...|+++..+.+
T Consensus 265 ~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~--~l~~~~d~~Ir~~~l~lL~~l~~------ 333 (526)
T PF01602_consen 265 LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILF--FLLYDDDPSIRKKALDLLYKLAN------ 333 (526)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHH--HHHCSSSHHHHHHHHHHHHHH--------
T ss_pred HHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhh--eecCCCChhHHHHHHHHHhhccc------
Confidence 3557888999999999998887777777775554 233331111122 23223333444567787777776
Q ss_pred hHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHh
Q psy8243 391 KDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILD 470 (624)
Q Consensus 391 KeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe 470 (624)
++...-....|+.-.+...-..|...+...+...+++.+.-..++++.+++.=-.++..-. --.++.+..++.
T Consensus 334 -~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~------~~~~~~i~~ll~ 406 (526)
T PF01602_consen 334 -ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVS------NEIINVIRDLLS 406 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCH------CHHHHHHHHHHH
T ss_pred -ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccccc------chHHHHHHHHhh
Confidence 2233334445555443333344888999999999999999999988888776654332222 335556666665
Q ss_pred ccChHHHHHHHHHHHHHHHH
Q psy8243 471 VIEPAEFQKVMVPLFHQIAK 490 (624)
Q Consensus 471 ~~~p~~f~~v~~pLFk~La~ 490 (624)
.. ++....+...+++.+..
T Consensus 407 ~~-~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 407 NN-PELREKILKKLIELLED 425 (526)
T ss_dssp HS-TTTHHHHHHHHHHHHTS
T ss_pred cC-hhhhHHHHHHHHHHHHH
Confidence 43 34444455555555544
No 15
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=53.20 E-value=2.5e+02 Score=32.22 Aligned_cols=119 Identities=14% Similarity=0.242 Sum_probs=68.4
Q ss_pred HHHHhhhcCCcccccchhHHHH--HHHHHHHHhccCC--CCChhhhhccCCHHHHHHHhhhcCC-CCHHHHHHHHHHHHH
Q psy8243 265 EMVEYLTAQDVHISEAIYPEAV--NMVRLYLVFLESP--DFQPNIAKKYIDQKFVLQLLDLFDS-EDPRERDFLKTTLHR 339 (624)
Q Consensus 265 ELvdyv~eeDe~~~E~~WpHLq--lVYe~flrfv~Sp--~f~p~~ak~~Id~~Fi~~Ll~lfdS-eDpRERd~LktiLhr 339 (624)
|+++|+-.. +.+.+..+-|+. .+-++|+|+|... +....+..=.-++++|.+|++.|+. -|+........+|..
T Consensus 11 e~l~Fik~~-~~~v~~llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~a 89 (475)
T PF04499_consen 11 EMLEFIKSQ-PNFVDNLLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKA 89 (475)
T ss_pred HHHHHHHhC-ccHHHHHHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 556666432 345666666664 6889999998642 2322322222368999999999984 444555666667666
Q ss_pred HHhhhhh--------------hhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHh
Q psy8243 340 IYGKFLG--------------LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN 384 (624)
Q Consensus 340 IY~Kf~~--------------lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIIn 384 (624)
|.....+ .|......+...+.+++.+...-.++.-.+.|+..+|+
T Consensus 90 II~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 90 IIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 6554321 33333444455555666643334555555555555554
No 16
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=49.13 E-value=3.3e+02 Score=28.35 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=25.4
Q ss_pred CCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHH
Q psy8243 430 PSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLF 485 (624)
Q Consensus 430 psLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLF 485 (624)
+.....+++.+..+|+.-...|- -=+-++.+++..++..-..++..++
T Consensus 214 ~~~~~~i~~~l~~~~~~l~~~k~--------Gs~Vve~~l~~~~~~~~~~ii~~l~ 261 (322)
T cd07920 214 PDDTSRIIEKLLGNIVQLSCHKF--------ASNVVEKCLKHASKEERELIIDEIL 261 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcc--------hHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 44455666666666665555554 2233555555555555444544444
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=48.26 E-value=46 Score=32.94 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcccccccccchHHHHHh
Q psy8243 459 VMFLNELEEILDVI----EPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRN 534 (624)
Q Consensus 459 VlFLnELeeILe~~----~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~I~PiI~paL~~~ 534 (624)
+--|..|..++..- ....|...+..+...|+.+++|.+.+|+-.|+.++.. +.......-+..+..++|.|.+.
T Consensus 25 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~--l~~~l~~~~~~~~~~~l~~Ll~~ 102 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSD--LARQLGSHFEPYADILLPPLLKK 102 (228)
T ss_dssp HHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHH--HHHHHGGGGHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHHHHHHHH
Confidence 55667777777543 2345555555666799999999999999999998762 22344444444567777777665
Q ss_pred hhccchHHHHHHHHH
Q psy8243 535 SKTHWNKEKERMRDR 549 (624)
Q Consensus 535 sk~HWn~tVr~la~n 549 (624)
.... ++.|+..+.+
T Consensus 103 ~~~~-~~~i~~~a~~ 116 (228)
T PF12348_consen 103 LGDS-KKFIREAANN 116 (228)
T ss_dssp GG----HHHHHHHHH
T ss_pred Hccc-cHHHHHHHHH
Confidence 4443 6777777766
No 18
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=46.51 E-value=2.1e+02 Score=34.93 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHH---hhhcCCCCHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Q psy8243 282 YPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQL---LDLFDSEDPRERDFLKTTLHRIYGK-FLGLRAYIRKQINN 357 (624)
Q Consensus 282 WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~L---l~lfdSeDpRERd~LktiLhrIY~K-f~~lR~fIRk~I~n 357 (624)
-||||++.+-+..-..++.-...-+=.-=.+.|+.+- .+.+.|+|-.--+++...-..==.+ |.+ |..-+++
T Consensus 340 ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~Tfqg----iLsf~~s 415 (970)
T COG5656 340 EPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQG----ILSFLLS 415 (970)
T ss_pred ccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhh----HHHHHHH
Confidence 3789988887655443332111101000112344443 3445677776655553321110000 222 2334566
Q ss_pred HHHHhhhccCC---cccHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHh--hCC
Q psy8243 358 IFYRFIYETEH---HNGIAELLEILGSIIN--GFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE--KDP 430 (624)
Q Consensus 358 if~~FIye~e~---hnGIaELLeILgSIIn--GFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFle--KDp 430 (624)
+|-++--...+ ..-..-.|+++.||++ .-..|+..++..|+...++|-.+.++.-. ..+-.+.+..|=+ ||+
T Consensus 416 il~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL-~Srace~is~~eeDfkd~ 494 (970)
T COG5656 416 ILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFL-KSRACEFISTIEEDFKDN 494 (970)
T ss_pred HHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccch-HHHHHHHHHHHHHhcccc
Confidence 66666544332 2244568999999999 33457777999999999999999987644 4455555566622 667
Q ss_pred CChHHHHHHHh
Q psy8243 431 SLTEPVVKCLL 441 (624)
Q Consensus 431 sLt~~vi~~LL 441 (624)
.++.....+-.
T Consensus 495 ~ill~aye~t~ 505 (970)
T COG5656 495 GILLEAYENTH 505 (970)
T ss_pred hHHHHHHHHHH
Confidence 76666555443
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=44.90 E-value=98 Score=26.37 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=33.7
Q ss_pred hhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh
Q psy8243 303 PNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG 346 (624)
Q Consensus 303 p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~ 346 (624)
+.....+++...+..|+.++++.|++=|.....+|.++-.....
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 44455666667888899999999999998888888888655443
No 20
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=43.11 E-value=2.3e+02 Score=25.98 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Q psy8243 310 IDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFI 363 (624)
Q Consensus 310 Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FI 363 (624)
++..+...++...+..+..|+ ...++++..+.......+...+-..|.+..
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~ 122 (151)
T PF00620_consen 72 IPSELYDKFIAASKSADEEEQ---IEAIRSLLQSLPPSNRSLLKYLIELLSKVS 122 (151)
T ss_dssp TTHHHHHHHHHHHTSSSHHHH---HHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhccchhhHH---HHHHHHhhhccccccceeehhcccchhhhh
Confidence 455666777777777888777 345556666666555444455544444433
No 21
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=39.54 E-value=1e+02 Score=29.49 Aligned_cols=86 Identities=16% Similarity=0.287 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhh-HHHHHHH
Q psy8243 346 GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQ-LAYCVVQ 424 (624)
Q Consensus 346 ~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~q-L~~cv~q 424 (624)
.+...++..+-..+.+...... +.=..-.|+++..+++.|..-||.|-..|+..++.|+..++.-+.=++. ...++..
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 4444455555555555444433 4455568899999999999999999999999999999887765321333 3345555
Q ss_pred HHhhCCCCh
Q psy8243 425 FLEKDPSLT 433 (624)
Q Consensus 425 FleKDpsLt 433 (624)
++ +||.+.
T Consensus 144 l~-~~p~~l 151 (168)
T PF12783_consen 144 LC-KDPQFL 151 (168)
T ss_pred HH-hChhHH
Confidence 55 455443
No 22
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.54 E-value=6.9e+02 Score=30.02 Aligned_cols=152 Identities=23% Similarity=0.219 Sum_probs=85.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHH
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDE 393 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeE 393 (624)
-|..|+.+++|.|..+.+.+|..+++.... -|. ..+.|.+++|..++ |-...++||. |...|-
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~---~~~---~~l~~~l~~y~~~t----~s~~~~~il~----~~~~P~--- 67 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS---DRE---PWLVNGLVDYYLST----NSQRALEILV----GVQEPH--- 67 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc---cch---HHHHHHHHHHHhhc----CcHHHHHHHH----hcCCcc---
Confidence 377899999999999999999998887553 222 13456666666554 3344667665 344442
Q ss_pred HHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHH-----HHHHHhccCCCCCCcccccccccchHHHHHHHH
Q psy8243 394 HKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEP-----VVKCLLKFWPKTHSPKESVVYSQVMFLNELEEI 468 (624)
Q Consensus 394 hk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~-----vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeI 468 (624)
+|.||.++==-+.++ .|--+....+..|+.++|.-... ++.-|||.==...+.-- + ..-|.-|.-+
T Consensus 68 ~K~~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~--~---~~al~~Liml 138 (668)
T PF04388_consen 68 DKHLFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITV--V---SSALLVLIML 138 (668)
T ss_pred HHHHHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHH--H---HHHHHHHHHH
Confidence 344433211111111 24455566666777776654432 22333333322222111 0 2233444555
Q ss_pred HhccChHHHHHHHHHHHHHHHHHh
Q psy8243 469 LDVIEPAEFQKVMVPLFHQIAKCV 492 (624)
Q Consensus 469 Le~~~p~~f~~v~~pLFk~La~Ci 492 (624)
|+.++ .........||.++++++
T Consensus 139 LP~ip-~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 139 LPHIP-SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hcccc-chhhHHHHHHHHHHHHHH
Confidence 66663 455777888888888887
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=35.12 E-value=1.8e+02 Score=32.94 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=69.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC
Q psy8243 312 QKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKF----LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 387 (624)
Q Consensus 312 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf----~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa 387 (624)
+..+.+|+.+++.++..|=+++-..+.|+..-. ...-.-+...+.+++..-.-+..++..-.=+-|.++.+|+- .
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~-~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF-V 103 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh-c
Confidence 568888999999999899999888888885432 22334444555566555444444443334466777777773 3
Q ss_pred CCChHHHHHHHHHHhhhccc---ccccccchhhHHHHHHHHHhhCC
Q psy8243 388 LPLKDEHKFFLLKVLLPLHK---VKSLSVYHPQLAYCVVQFLEKDP 430 (624)
Q Consensus 388 ~PLKeEhk~Fl~~VLLPLHk---~k~l~~Y~~qL~~cv~qFleKDp 430 (624)
..-..+...-|...|+|... .+....|.+--.+++.+.++..|
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344555556777777743 34566677766666677777776
No 24
>KOG0889|consensus
Probab=31.72 E-value=2e+02 Score=40.37 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy8243 261 TALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRI 340 (624)
Q Consensus 261 ~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrI 340 (624)
++|-||+-||-+ +-....+..+-.+|.+-+-.+.. ...-....-+.+.+|++++.+--+.|++..+.+|.+|
T Consensus 316 s~LAdllHhvR~------~L~~~~i~~~i~l~s~~l~D~~l--~~~iq~m~akLllNlve~i~~~~~~s~~~~~~lL~~i 387 (3550)
T KOG0889|consen 316 SMLADLLHHVRE------SLSLTQIIKVISLFSRNLHDSSL--SSGIQTMSAKLLLNLVERIEELGCQSVDRARDLLLRI 387 (3550)
T ss_pred HHHHHHHHHHHh------cCCHHHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 567777777743 22333333344444455543332 3345555668899999998877788889999999999
Q ss_pred HhhhhhhhHHHHH
Q psy8243 341 YGKFLGLRAYIRK 353 (624)
Q Consensus 341 Y~Kf~~lR~fIRk 353 (624)
.+.|++.-..+-+
T Consensus 388 l~~~v~kf~t~~~ 400 (3550)
T KOG0889|consen 388 LESFVSKFKTFAR 400 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 9999886666544
No 25
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=29.45 E-value=82 Score=28.36 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=45.8
Q ss_pred ChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccCh-------HHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy8243 432 LTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEP-------AEFQKVMVPLFHQIAKCVSSSHFQVAERAL 504 (624)
Q Consensus 432 Lt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p-------~~f~~v~~pLFk~La~Ci~S~hfqVAErAL 504 (624)
-+..++..+.++-..+.+.+. +..|.-+.+|+..... ..|.++...+|..+.......+-+-..+-+
T Consensus 29 ~a~~Iv~~i~~~~~~~~~~~k------L~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll 102 (121)
T smart00582 29 HAKEIVELWEKYIKKAPPPRK------LPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLL 102 (121)
T ss_pred HHHHHHHHHHHHHHhCCccce------ehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555566666 7777778888854321 244455555666666655555677778888
Q ss_pred Hhhcch
Q psy8243 505 YYWNNE 510 (624)
Q Consensus 505 ~~w~Ne 510 (624)
.+|...
T Consensus 103 ~iW~~~ 108 (121)
T smart00582 103 NIWEER 108 (121)
T ss_pred HHHhcC
Confidence 889864
No 26
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=27.88 E-value=3e+02 Score=26.64 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=47.0
Q ss_pred HHHHHHhhhcCCCCHHH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhc----cCCcccHHHHHHHHHHHHhcCC
Q psy8243 313 KFVLQLLDLFDSEDPRE-RDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE----TEHHNGIAELLEILGSIINGFA 387 (624)
Q Consensus 313 ~Fi~~Ll~lfdSeDpRE-Rd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye----~e~hnGIaELLeILgSIInGFa 387 (624)
.++..|+..+..+|+.- +.....+|.+||..--++-.+.|+.....+-.|+-- .+......+.|+.+..++.-|.
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 46777888888777643 567777888888877777677776655444443321 1112334445555555555555
Q ss_pred CCChH
Q psy8243 388 LPLKD 392 (624)
Q Consensus 388 ~PLKe 392 (624)
..+++
T Consensus 147 tt~rp 151 (165)
T PF08167_consen 147 TTFRP 151 (165)
T ss_pred ccccc
Confidence 44444
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=26.17 E-value=2.1e+02 Score=24.30 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=43.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhc
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 385 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInG 385 (624)
.+..|++++++.+++-|......|..+-......+..+.+ .+-..+..++.. ..+.-....+..++.+..+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 4666888888888888888778888776654444444433 444445554443 2334444556666666554
No 28
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=26.11 E-value=1.7e+02 Score=34.74 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhh------cchhhhhhhhcc-------------cccccccchHHHHH----hhh
Q psy8243 480 VMVPLFHQIAKCVSSSHFQVAERALYYW------NNEYFMNLITDN-------------ATVIVPIMFPALYR----NSK 536 (624)
Q Consensus 480 v~~pLFk~La~Ci~S~hfqVAErAL~~w------~Ne~~l~li~~n-------------~~~I~PiI~paL~~----~sk 536 (624)
+...||...++-+.|+|-+||-.|..|| .++.-+..-.-- ...|+|.++.-|.+ --.
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Q ss_pred ccchHHHHHHHHHhhHhHhhhhh--------HHHHHHHHHHHHHHHHHH
Q psy8243 537 THWNKEKERMRDRDLTWINIGEK--------ERMRDRDLTWSRVEALAM 577 (624)
Q Consensus 537 ~HWn~tVr~la~n~~~~~~~~e~--------~~~~~r~~~W~~Ie~~A~ 577 (624)
.-||...-.-++=++-.+...++ -...-|.+.|...+..++
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHH
No 29
>PF11728 DUF939_C: DUF939 C-terminal domain; InterPro: IPR021062 This entry represents a C-terminal domain found in a set of bacterial proteins. The proteins are about 160 amino acids in length and are predicted to be multi-pass membrane proteins. ; PDB: 3KMI_B.
Probab=25.85 E-value=3.3e+02 Score=26.68 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy8243 261 TALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRI 340 (624)
Q Consensus 261 ~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrI 340 (624)
..|.++..|+.+++.. -.|-++.-.-..+-... +.|.+..+..|+..-=.-.+=-+.|++++ .+|+++
T Consensus 18 ~Il~~~a~~L~~~~~~---~~~~~~~~l~~~l~~a~-------~~A~~~~eN~l~~~~~yy~~Yf~MR~~Q~--~iL~~M 85 (167)
T PF11728_consen 18 EILNEMARYLRNGDDN---WDGKEISELEKLLKKAK-------SLAYRDQENHLLRNENYYYHYFEMREKQL--EILKRM 85 (167)
T ss_dssp HHHHHHHHHHHSTTS----SHHHHHHHHHHHHHHHH-------HHHHHCCCCS-HHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHhCCCCC---cHHHHHHHHHHHHHHHH-------HHHHHHhCCCccCCchHHHHHHHHHHHHH--HHHHHH
Confidence 5678888888766555 33444444433332221 12222222222221111111124677666 799999
Q ss_pred HhhhhhhhHHHHH--HHHHHHHHhhhccCCcccHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHhh
Q psy8243 341 YGKFLGLRAYIRK--QINNIFYRFIYETEHHNGIAELLEILGSIINGF-ALPLKDEHKFFLLKVLL 403 (624)
Q Consensus 341 Y~Kf~~lR~fIRk--~I~nif~~FIye~e~hnGIaELLeILgSIInGF-a~PLKeEhk~Fl~~VLL 403 (624)
|..+......... .|.+.|..-...-...|-...+|+=+..+...| ..||-.-+..|=.|+.|
T Consensus 86 ~~~l~~i~~~~~q~~~ia~~~~~~a~~~~e~n~~~~ll~~L~~l~~~fr~~~LP~TReEFE~RA~L 151 (167)
T PF11728_consen 86 YPNLSKIYMSPKQAEIIADFLEELAESLHENNTAEELLEELEELKEEFREMPLPKTREEFENRAAL 151 (167)
T ss_dssp HHHHTT-SS--HHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHTS---SSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9988765544432 344444443333333455566777776666666 55776767777666443
No 30
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.63 E-value=1.6e+02 Score=27.89 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=43.2
Q ss_pred chHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHhh---cchhhhhhhhcccc
Q psy8243 459 VMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHF-QVAERALYYW---NNEYFMNLITDNAT 521 (624)
Q Consensus 459 VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hf-qVAErAL~~w---~Ne~~l~li~~n~~ 521 (624)
...++||.+..-. ++.+|..++..|.++|.+ +|+|. .=|-+-|..+ .++.|...+.+|..
T Consensus 19 gy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 19 GYLYEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred hHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 4566788777654 788999999999999998 88887 4455555553 34566666666653
No 31
>KOG0213|consensus
Probab=22.22 E-value=7.3e+02 Score=30.76 Aligned_cols=156 Identities=22% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHHHhhhccCCcccHHHHHHHHHH
Q psy8243 306 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAY----IRKQINNIFYRFIYETEHHNGIAELLEILGS 381 (624)
Q Consensus 306 ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~f----IRk~I~nif~~FIye~e~hnGIaELLeILgS 381 (624)
.|+|+.+ .+..++-+++++-+.-|++-.+++.+| -..+... .-..+++++|.|+-| |--|+|||
T Consensus 793 ~kpylpq-i~stiL~rLnnksa~vRqqaadlis~l---a~Vlktc~ee~~m~~lGvvLyEylge--------eypEvLgs 860 (1172)
T KOG0213|consen 793 VKPYLPQ-ICSTILWRLNNKSAKVRQQAADLISSL---AKVLKTCGEEKLMGHLGVVLYEYLGE--------EYPEVLGS 860 (1172)
T ss_pred cccchHH-HHHHHHHHhcCCChhHHHHHHHHHHHH---HHHHHhccHHHHHHHhhHHHHHhcCc--------ccHHHHHH
Q ss_pred HHhcCCCCChHHHHHHHHHHhhhcc----cccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccc
Q psy8243 382 IINGFALPLKDEHKFFLLKVLLPLH----KVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYS 457 (624)
Q Consensus 382 IInGFa~PLKeEhk~Fl~~VLLPLH----k~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~ 457 (624)
|++. .+.|...| ..+-....-+.|.-++.-==+|--..+-.++..|-.-=|.--+.+| .=
T Consensus 861 ILgA-------------ikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE---WM 924 (1172)
T KOG0213|consen 861 ILGA-------------IKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE---WM 924 (1172)
T ss_pred HHHH-------------HHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH---HH
Q ss_pred cchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Q psy8243 458 QVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCV 492 (624)
Q Consensus 458 ~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci 492 (624)
.++| ||.++|-.. ..+...-...-|-.||+.+
T Consensus 925 RIcf--eLlelLkah-kK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 925 RICF--ELLELLKAH-KKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred HHHH--HHHHHHHHH-HHHHHHHHHhhhhHHHHhc
No 32
>PHA03080 putative virion core protein; Provisional
Probab=21.69 E-value=9.3e+02 Score=26.91 Aligned_cols=152 Identities=14% Similarity=0.220 Sum_probs=93.8
Q ss_pred cchhHHHHHHHHHHHHhccCCCCChhhhhcc-CCHHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHhhhhh-----hhHHH
Q psy8243 279 EAIYPEAVNMVRLYLVFLESPDFQPNIAKKY-IDQKFVLQLLDLF-DSEDPRERDFLKTTLHRIYGKFLG-----LRAYI 351 (624)
Q Consensus 279 E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~-Id~~Fi~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~-----lR~fI 351 (624)
|+.|. .||++..+++.. .+.+.. +|...|..-..++ .+..++=|+.+ .-.||.+|-. -+..+
T Consensus 4 e~kqs---~IF~ivsk~iV~-----s~~~g~~~n~~~Ie~Kak~L~y~~~~s~resi---iNsIy~~ces~i~v~~~~~l 72 (366)
T PHA03080 4 EQKQS---RIFDIVSKAIVK-----SVLKGLSINSEYIEAKAKQLCYCNNSSYKESI---INSIYNCCESNIRITDIEHL 72 (366)
T ss_pred ccccc---cHHHHHHHHHHH-----HHHcccccCHHHHHHHHHHhccCCchhHHHHH---HHHHHHHHHhcCCCCCHHHH
Confidence 56665 789998888752 223333 5666666555554 56677777764 4457777643 44555
Q ss_pred HHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCC
Q psy8243 352 RKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPS 431 (624)
Q Consensus 352 Rk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDps 431 (624)
.+.+.+.=-+++|- .+.+|+.++.+|..+ |+ |-.-|..+..|.+ -.-|+..++..+.+.--
T Consensus 73 ~~iL~~Lr~~~~yV----~n~~EF~rLynsL~R-fT------H~~SFF~tC~pTI--------~aTLaTLiTlIL~NkLl 133 (366)
T PHA03080 73 KKILDNLRRHSVYV----CNSTEFWRLYNSLYR-FT------HCKSFFNTCMPTI--------RATLATLITLILSNKLL 133 (366)
T ss_pred HHHHHHhcccceee----cChHHHHHHHHHHHH-Hh------hhHHHHHHhHHHH--------HHHHHHHHHHHHHhHHH
Confidence 55554444444433 456788888887766 43 4333444555544 34677777777777666
Q ss_pred ChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHh
Q psy8243 432 LTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILD 470 (624)
Q Consensus 432 Lt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe 470 (624)
-+...+.++-+|- .+++|- ...||.++||
T Consensus 134 ~AAemve~iE~yl--f~~~k~--------paqELaDLLe 162 (366)
T PHA03080 134 YAAEMVEYIETYL--FSSNKP--------PAQELADLLE 162 (366)
T ss_pred HHHHHHHHHHHHH--hcCCCC--------hHHHHHHHHH
Confidence 6777787776664 235555 6678999996
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=21.57 E-value=1.5e+03 Score=27.62 Aligned_cols=135 Identities=8% Similarity=0.159 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhccccccc--ccchhhHHHHHHHHHhhCC
Q psy8243 353 KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSL--SVYHPQLAYCVVQFLEKDP 430 (624)
Q Consensus 353 k~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l--~~Y~~qL~~cv~qFleKDp 430 (624)
..+-+.+.+++..... -+.|.+.++..|++.+.- + + .+.+.+-.++. ..+ +.=...+..++..|++.-+
T Consensus 404 ~~cV~~Ll~ll~~~~~--~v~e~i~vik~IlrkyP~--~--~--il~~L~~~~~~-~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE--LLPQVVTAAKDIVRKYPE--L--L--MLDTLVTDYGA-DEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHCcc--H--H--HHHHHHHhhcc-cccccHHHHHHHHHHHHhhHhhHh
Confidence 3444566666643222 266778888888876531 1 1 11111111110 111 1112345667777776544
Q ss_pred CChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHhh
Q psy8243 431 SLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCV-SSSHFQVAERALYYW 507 (624)
Q Consensus 431 sLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci-~S~hfqVAErAL~~w 507 (624)
. +..+++.+++.|-.-++.=+ ...|.-...++-..+ .+.+..+..+++ .|. .+.|..|=.||..+|
T Consensus 475 ~-a~~~L~~~i~~f~~E~~~Vq------lqlLta~vKlfl~~p-~~~~~~l~~vL~---~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 475 N-GKDIIQRFIDTIMEHEQRVQ------LAILSAAVKMFLRDP-QGMEPQLNRVLE---TVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred h-HHHHHHHHHhhhccCCHHHH------HHHHHHHHHHHhcCc-HHHHHHHHHHHH---HHHhcCCChhHHHHHHHHH
Confidence 3 66788777777765433333 556666666665544 444555444444 443 468999999999999
Done!