Query psy8243
Match_columns 624
No_of_seqs 251 out of 434
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:23:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 4E-121 1E-125 977.1 36.6 384 127-574 1-402 (403)
2 2npp_B PP2A, B subunit, serine 100.0 2E-122 8E-127 998.8 26.1 402 119-584 26-445 (449)
3 2jak_A Serine/threonine-protei 100.0 5E-113 2E-117 912.0 35.0 355 119-537 38-392 (392)
4 2jak_A Serine/threonine-protei 99.5 1.7E-14 5.7E-19 154.4 11.4 82 218-299 40-121 (392)
5 3fga_B Serine/threonine-protei 99.5 9.2E-14 3.2E-18 149.1 12.1 79 224-302 1-79 (403)
6 2npp_B PP2A, B subunit, serine 99.5 1.4E-14 4.7E-19 157.5 3.8 83 218-300 28-110 (449)
7 2qk1_A Protein STU2; STU2P, XM 93.9 0.86 2.9E-05 45.0 14.0 181 320-508 23-216 (249)
8 2qk2_A LP04448P; mini spindles 93.3 1 3.5E-05 43.1 13.1 180 318-508 20-201 (242)
9 1ibr_B P95, importin beta-1 su 89.8 3.1 0.00011 42.4 12.8 173 315-508 3-199 (462)
10 2bpt_A Importin beta-1 subunit 88.4 27 0.00093 38.7 20.1 222 314-547 225-473 (861)
11 1qgr_A Protein (importin beta 87.8 30 0.001 38.5 19.9 223 314-547 218-470 (876)
12 4fdd_A Transportin-1; heat rep 85.2 12 0.0004 42.5 15.1 212 315-549 15-237 (852)
13 1w63_A Adapter-related protein 85.0 16 0.00053 40.5 15.7 140 316-469 353-492 (618)
14 2bpt_A Importin beta-1 subunit 82.7 17 0.00057 40.4 14.8 221 280-508 381-623 (861)
15 3u0r_A Apoptosis inhibitor 5; 82.6 64 0.0022 35.7 19.3 71 257-344 61-131 (507)
16 2jdq_A Importin alpha-1 subuni 80.4 25 0.00086 35.6 14.0 190 307-508 101-301 (450)
17 1qgr_A Protein (importin beta 78.2 18 0.00062 40.2 13.1 176 315-508 3-199 (876)
18 4hxt_A De novo protein OR329; 76.4 14 0.00049 34.0 10.0 188 305-509 36-238 (252)
19 2vgl_B AP-2 complex subunit be 76.0 93 0.0032 33.9 17.8 175 313-508 353-528 (591)
20 4db6_A Armadillo repeat protei 72.7 49 0.0017 29.9 12.5 178 313-508 12-205 (210)
21 1u6g_C TIP120 protein, CAND1; 68.0 45 0.0015 39.4 13.8 182 314-508 87-280 (1230)
22 3m1i_C Exportin-1; heat repeat 66.7 1.4E+02 0.0049 34.8 17.6 187 314-508 590-829 (1049)
23 1u6g_C TIP120 protein, CAND1; 65.8 71 0.0024 37.7 14.8 182 314-508 7-200 (1230)
24 1wa5_C Importin alpha RE-expor 65.3 72 0.0025 36.8 14.6 84 301-385 537-629 (960)
25 1ibr_B P95, importin beta-1 su 64.7 78 0.0027 31.9 13.2 208 315-533 219-458 (462)
26 1wa5_B Importin alpha subunit; 62.1 38 0.0013 35.8 10.7 186 311-509 171-367 (530)
27 4hxt_A De novo protein OR329; 59.7 1E+02 0.0036 28.1 12.6 176 315-508 4-195 (252)
28 4fdd_A Transportin-1; heat rep 57.3 2.5E+02 0.0084 31.6 21.0 230 307-547 478-733 (852)
29 2jdq_A Importin alpha-1 subuni 56.1 1E+02 0.0035 31.0 12.3 181 309-508 59-259 (450)
30 1xqr_A HSPBP1 protein; armadil 54.6 1.1E+02 0.0036 30.9 12.0 73 314-386 82-156 (296)
31 4b8j_A Importin subunit alpha- 52.7 59 0.002 34.3 10.1 191 306-509 153-355 (528)
32 2x19_B Importin-13; nuclear tr 51.1 1.3E+02 0.0046 34.1 13.5 28 481-508 815-842 (963)
33 4db8_A Armadillo-repeat protei 44.9 59 0.002 30.2 7.8 95 309-409 50-150 (252)
34 4fu3_A Regulation of nuclear P 44.4 29 0.00099 30.8 5.3 82 423-510 27-114 (135)
35 2vgl_B AP-2 complex subunit be 43.6 62 0.0021 35.3 8.8 69 312-384 389-457 (591)
36 2km4_A Regulator of TY1 transp 42.3 25 0.00085 32.0 4.5 58 448-511 53-117 (142)
37 1wa5_B Importin alpha subunit; 41.8 1.4E+02 0.0047 31.5 10.9 71 315-385 89-161 (530)
38 3tpo_A Importin subunit alpha- 41.6 3.4E+02 0.012 28.7 14.7 229 257-508 115-360 (529)
39 3b2a_A TON_1937, putative unch 35.6 3.7E+02 0.013 27.3 12.6 176 314-508 34-214 (265)
40 1w63_A Adapter-related protein 34.6 4.9E+02 0.017 28.4 15.4 181 313-507 179-374 (618)
41 2rg8_A Programmed cell death p 34.5 71 0.0024 29.8 6.4 76 253-349 4-80 (165)
42 3ul1_B Importin subunit alpha- 34.5 4.4E+02 0.015 27.8 13.8 144 256-410 95-245 (510)
43 4db8_A Armadillo-repeat protei 34.0 2.8E+02 0.0095 25.4 11.0 180 315-508 14-205 (252)
44 2x1g_F Cadmus; transport prote 33.6 5.8E+02 0.02 29.0 18.4 117 367-495 476-596 (971)
45 4b8j_A Importin subunit alpha- 33.4 4.3E+02 0.015 27.5 16.1 183 309-507 113-310 (528)
46 3ibv_A Exportin-T; karyopherin 32.5 80 0.0027 37.3 7.9 194 315-531 8-242 (980)
47 2vgl_A Adaptor protein complex 30.5 2.2E+02 0.0074 31.6 10.6 63 435-508 521-585 (621)
48 1wa5_C Importin alpha RE-expor 30.2 6.7E+02 0.023 28.7 18.2 32 313-344 123-154 (960)
49 1b3u_A Protein (protein phosph 26.8 5.4E+02 0.019 26.5 14.3 168 319-508 132-306 (588)
50 3m1i_C Exportin-1; heat repeat 25.5 1.8E+02 0.0063 33.9 9.3 177 311-506 14-218 (1049)
51 2x1g_F Cadmus; transport prote 24.0 8.3E+02 0.028 27.7 17.8 191 308-508 580-810 (971)
52 1sz9_A PCF11 protein; RNA poly 23.8 71 0.0024 29.2 4.3 90 415-510 23-115 (144)
53 1oks_A RNA polymerase alpha su 22.4 78 0.0027 24.9 3.5 46 377-424 5-50 (56)
54 2nr5_A Hypothetical protein SO 21.8 78 0.0027 25.0 3.4 37 136-174 25-61 (67)
55 4hat_C Exportin-1; heat repeat 20.6 1.1E+03 0.038 27.8 15.6 132 371-509 211-370 (1023)
56 2qk2_A LP04448P; mini spindles 20.5 3.9E+02 0.013 24.8 9.0 29 314-342 99-127 (242)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=3.7e-121 Score=977.14 Aligned_cols=384 Identities=73% Similarity=1.181 Sum_probs=370.9
Q ss_pred ChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhccccccccccc
Q psy8243 127 SSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYC 206 (624)
Q Consensus 127 ~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~~~~~~~lFR 206 (624)
|++||++||++||++||++|||++||++|+++||+||+||+||+||++++++++||++|+++++||++| |||
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~N--------iFR 72 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN--------MFR 72 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHH--------HCC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--------hCC
Confidence 688999999999999999999977999999999999999999999999999999999999999999999 999
Q ss_pred cCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHH
Q psy8243 207 SIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAV 286 (624)
Q Consensus 207 ~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLq 286 (624)
++||.++|.|.+ || | +||+|+.|++|||||
T Consensus 73 ~lPp~~~~~~~~------------------------~d----~----------------------eedep~~e~sWpHLq 102 (403)
T 3fga_B 73 TLPPSSNPTGAE------------------------FD----P----------------------EEDEPTLEAAWPHLQ 102 (403)
T ss_dssp CCCCCSSCCSTT------------------------CC----G----------------------GGCCCCCCTTHHHHH
T ss_pred CCCCCCCCcccc------------------------CC----c----------------------cccccccccCcHHHH
Confidence 999999987665 55 4 899999999999999
Q ss_pred HHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhcc
Q psy8243 287 NMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 366 (624)
Q Consensus 287 lVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~ 366 (624)
+||++|+||++||+|+|+++|+|||++||.+|+++|+|+|||||++||++||||||||+++|++||++|+|+|++||||+
T Consensus 103 lVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~ 182 (403)
T 3fga_B 103 LVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 182 (403)
T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCC
Q psy8243 367 EHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPK 446 (624)
Q Consensus 367 e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~ 446 (624)
++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++||++|||+|+..+++||+||||+
T Consensus 183 e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~ 262 (403)
T 3fga_B 183 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPK 262 (403)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCS
T ss_pred ccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhccccccccc
Q psy8243 447 THSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPI 526 (624)
Q Consensus 447 tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~I~Pi 526 (624)
|||+|| |+||+||++||+.++|++|++++.++|++||+|++|+|||||||||++|+|++++++|++|++.|+|+
T Consensus 263 tns~Ke------vlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPi 336 (403)
T 3fga_B 263 THSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPI 336 (403)
T ss_dssp SCHHHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH
T ss_pred CCcHHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhhccchHHHHHHHHHh--------------hH----hHhhhhhHHHHHHHHHHHHHHH
Q psy8243 527 MFPALYRNSKTHWNKEKERMRDRD--------------LT----WINIGEKERMRDRDLTWSRVEA 574 (624)
Q Consensus 527 I~paL~~~sk~HWn~tVr~la~n~--------------~~----~~~~~e~~~~~~r~~~W~~Ie~ 574 (624)
|+|+|++++++|||++|+++++|. |+ .++.++++++++|++.|++|++
T Consensus 337 i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~~~ 402 (403)
T 3fga_B 337 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIEN 402 (403)
T ss_dssp HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999993 33 2345667788999999999874
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.4e-122 Score=998.77 Aligned_cols=402 Identities=71% Similarity=1.146 Sum_probs=356.6
Q ss_pred ccccCCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhccc
Q psy8243 119 QSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVA 198 (624)
Q Consensus 119 ~~~~f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~~ 198 (624)
.+++|+|||+++|++||++||++||++|||.+||.+|+++||+||+||+||+||++++++.+||++|+++++||++|
T Consensus 26 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~N--- 102 (449)
T 2npp_B 26 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN--- 102 (449)
T ss_dssp ------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHH---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---
Confidence 46689999999999999999999999999966999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccc
Q psy8243 199 YPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHIS 278 (624)
Q Consensus 199 ~~~~~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~ 278 (624)
|||++||..+|.+.. || | +||+|+.
T Consensus 103 -----iFR~lPp~~~~~~~~------------------------~d----~----------------------eedep~~ 127 (449)
T 2npp_B 103 -----MFRTLPPSSNPTGAE------------------------FD----P----------------------EEDEPTL 127 (449)
T ss_dssp -----HCCCCCCCSSCCSSS------------------------SC----G----------------------GGCCCCC
T ss_pred -----hCCCCCCCCCccccc------------------------CC----C----------------------ccccccc
Confidence 999999998887664 55 4 8999999
Q ss_pred cchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy8243 279 EAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 358 (624)
Q Consensus 279 E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~ni 358 (624)
|++|||||+||++|+||++||+|+|+++++|||++||.+|+++|+|+|||||++||++||||||||+++|++||++|+|+
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHH
Q psy8243 359 FYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVK 438 (624)
Q Consensus 359 f~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~ 438 (624)
|++||||+++||||+|||||+|||||||++|||+||+.||.+||||||++++++.||+||+||++||++|||+|++.+++
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~ 287 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVM 287 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhc
Q psy8243 439 CLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITD 518 (624)
Q Consensus 439 ~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~ 518 (624)
||+||||+|||+|| |+||+||++||+.+++++|++++.++|++||+|++|+|||||||||++|+|++|+++|++
T Consensus 288 ~LLk~WP~tns~Ke------vlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~ 361 (449)
T 2npp_B 288 ALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361 (449)
T ss_dssp HHHHTCCSSCHHHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT
T ss_pred HHHHhCCCCCchHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh
Confidence 99999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHhhhccchHHHHHHHHHhh--------------H----hHhhhhhHHHHHHHHHHHHHHHHHHhCC
Q psy8243 519 NATVIVPIMFPALYRNSKTHWNKEKERMRDRDL--------------T----WINIGEKERMRDRDLTWSRVEALAMKNP 580 (624)
Q Consensus 519 n~~~I~PiI~paL~~~sk~HWn~tVr~la~n~~--------------~----~~~~~e~~~~~~r~~~W~~Ie~~A~~~~ 580 (624)
|++.|+|+|+|+|++++++|||++||++++|.+ + .++.++++++++|+++|++|+++|++|+
T Consensus 362 n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~i~~~A~~~~ 441 (449)
T 2npp_B 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANP 441 (449)
T ss_dssp THHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC----------------
T ss_pred chhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999933 2 1233455667789999999999999999
Q ss_pred CCCC
Q psy8243 581 HYKP 584 (624)
Q Consensus 581 ~~~~ 584 (624)
++..
T Consensus 442 ~~~~ 445 (449)
T 2npp_B 442 QVLK 445 (449)
T ss_dssp ----
T ss_pred cccc
Confidence 8753
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=4.6e-113 Score=911.98 Aligned_cols=355 Identities=76% Similarity=1.221 Sum_probs=325.3
Q ss_pred ccccCCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhccc
Q psy8243 119 QSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVA 198 (624)
Q Consensus 119 ~~~~f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~~ 198 (624)
.+++|+|+|+++|++||++||++||++|||.+||.+|+++||+||+||+||+||++++++.+||++|+++++||++|
T Consensus 38 ~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~N--- 114 (392)
T 2jak_A 38 VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN--- 114 (392)
T ss_dssp ----CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHH---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---
Confidence 45689999999999999999999999999966999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccc
Q psy8243 199 YPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHIS 278 (624)
Q Consensus 199 ~~~~~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~ 278 (624)
|||++||..+|.+.. || | +||+++.
T Consensus 115 -----iFR~lPp~~~~~~~~------------------------~d----~----------------------eedep~~ 139 (392)
T 2jak_A 115 -----MFRTLPPSSNPTGAE------------------------FD----P----------------------EEDEPTL 139 (392)
T ss_dssp -----HCSCCCC-----------------------------------------------------------------CCC
T ss_pred -----hCCCCCCCCCccccc------------------------CC----c----------------------ccccccc
Confidence 999999998887654 54 4 7999999
Q ss_pred cchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy8243 279 EAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 358 (624)
Q Consensus 279 E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~ni 358 (624)
|++|||||+||++|+||+.||+|+++++|+|||++||.+|+++|+|||||||++||++||||||||+++|++||++|+|+
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 219 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 219 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHH
Q psy8243 359 FYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVK 438 (624)
Q Consensus 359 f~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~ 438 (624)
|++||||+++||||+|||||+||||||||+|||+||+.|+.+|||||||+++++.||+||+||++||++|||+|++.+++
T Consensus 220 f~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~ 299 (392)
T 2jak_A 220 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVM 299 (392)
T ss_dssp HHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhc
Q psy8243 439 CLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITD 518 (624)
Q Consensus 439 ~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~ 518 (624)
||+||||+|||+|| |+||+||++||+.+++++|++++.++|++||+|++|+|||||||||++|+|++|+++|++
T Consensus 300 ~LLk~WP~tns~Ke------vlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~ 373 (392)
T 2jak_A 300 ALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 373 (392)
T ss_dssp HHHHSSCSSCCTTH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHH
T ss_pred HHHHhCCCCCchHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHh
Confidence 99999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHhhhc
Q psy8243 519 NATVIVPIMFPALYRNSKT 537 (624)
Q Consensus 519 n~~~I~PiI~paL~~~sk~ 537 (624)
|++.|+|+|+|+||+++++
T Consensus 374 n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 374 NAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp THHHHTTTSCC--------
T ss_pred hhccchhhhhHHHHHHhcC
Confidence 9999999999999999874
No 4
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=99.54 E-value=1.7e-14 Score=154.37 Aligned_cols=82 Identities=54% Similarity=0.932 Sum_probs=73.7
Q ss_pred ccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhcc
Q psy8243 218 ILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLE 297 (624)
Q Consensus 218 e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~ 297 (624)
..|+||+++++++||++||+|||++|||.+||.+|+++||+||+||+||+||++.....++|+.++++.-|...++.+-.
T Consensus 40 p~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~l 119 (392)
T 2jak_A 40 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL 119 (392)
T ss_dssp --CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999997799999999999999999999999999999999999999999999886654
Q ss_pred CC
Q psy8243 298 SP 299 (624)
Q Consensus 298 Sp 299 (624)
+|
T Consensus 120 Pp 121 (392)
T 2jak_A 120 PP 121 (392)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 5
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=99.48 E-value=9.2e-14 Score=149.12 Aligned_cols=79 Identities=54% Similarity=0.935 Sum_probs=71.5
Q ss_pred ChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccCCCCC
Q psy8243 224 SSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQ 302 (624)
Q Consensus 224 ~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~Sp~f~ 302 (624)
|++||++||++||+|||++|||.+||.+|+++||+||+||+||+||+++....++|+.++++.-|...++.+-.+|..+
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~ 79 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSN 79 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSS
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 4679999999999999999999889999999999999999999999999999999999999999999988665554333
No 6
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=99.46 E-value=1.4e-14 Score=157.47 Aligned_cols=83 Identities=53% Similarity=0.923 Sum_probs=67.9
Q ss_pred ccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhcc
Q psy8243 218 ILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLE 297 (624)
Q Consensus 218 e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~ 297 (624)
..|+||+++++++||++||+|||++|||.+||.+|+++||+||+||+||+||++.....++|+.++++.-|...++.+-.
T Consensus 28 p~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~l 107 (449)
T 2npp_B 28 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL 107 (449)
T ss_dssp ----------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCCCC
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999997799999999999999999999999999999999999999999999886655
Q ss_pred CCC
Q psy8243 298 SPD 300 (624)
Q Consensus 298 Sp~ 300 (624)
+|.
T Consensus 108 Pp~ 110 (449)
T 2npp_B 108 PPS 110 (449)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.86 Score=45.00 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=120.5
Q ss_pred hhcCCCCHHHHHHHHHHHHH-HHhhhhhhh---HHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC-CCChHHH
Q psy8243 320 DLFDSEDPRERDFLKTTLHR-IYGKFLGLR---AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA-LPLKDEH 394 (624)
Q Consensus 320 ~lfdSeDpRERd~LktiLhr-IY~Kf~~lR---~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa-~PLKeEh 394 (624)
+.+.|.+.+||.....-|.. +-..+..+- ... ..+-+.+...+-.+.+..-+...+.++|.+.+|+. ..+...|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34589999999776666666 653322211 000 12233334444333444456788999999999987 6665234
Q ss_pred HHHHHHHhhhcccccccccchhhHHHHHHHHHhhC-C----CChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHH
Q psy8243 395 KFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-P----SLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEIL 469 (624)
Q Consensus 395 k~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD-p----sLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeIL 469 (624)
..-+.-.|+..++.+.-. -.....+++..+++.- | .-.+.++..|+..+-..+++=. ...+.-|..++
T Consensus 102 ~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk------~~al~~l~~~~ 174 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIR------MECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHH------HHHHHHHHHHH
Confidence 444556777777776633 3577889999999854 2 2234677777766654444333 56777888888
Q ss_pred hccCh--HHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 470 DVIEP--AEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 470 e~~~p--~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
+..+. ..|.+.+ ..+...+.+|+...+-.|=+.|...+.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 77664 7898988 999999999999999999998887654
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.34 E-value=1 Score=43.13 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=114.6
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHH
Q psy8243 318 LLDLFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKF 396 (624)
Q Consensus 318 Ll~lfdSeDpRERd~LktiLhrIY~Kf~~l-R~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~ 396 (624)
+.+.++|.|.+||...-.-|..+-..+... ...+ ..+.+.+...+..+.+.+-....+..++.+.+++...+.. |..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 556678999999987666666665442211 0111 2233344444422334444567888888888876554444 333
Q ss_pred HHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChH-
Q psy8243 397 FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPA- 475 (624)
Q Consensus 397 Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~- 475 (624)
-+...|+...+.+.-. -......++..+++.-+ ...++..++...--.|+.-. ..-+.-|..++...+++
T Consensus 98 ~ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr------~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVK------SETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHH------HHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHH------HHHHHHHHHHHHHcCCCC
Confidence 3455666666665533 35677788888877543 45666777666543343323 55677788888777665
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 476 EFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 476 ~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
.+......+...+..|+...+..|=+.|...+.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 356777889999999999999999888877653
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.77 E-value=3.1 Score=42.35 Aligned_cols=173 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhh-hhhh-------------hHHHHHHHHHHHHHhhhccCCcccHHHHHHHHH
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGK-FLGL-------------RAYIRKQINNIFYRFIYETEHHNGIAELLEILG 380 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~K-f~~l-------------R~fIRk~I~nif~~FIye~e~hnGIaELLeILg 380 (624)
+.+++..+.|+|+..|......|..+... ..++ ...+|....-.|-+++..... .+-.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~~~--- 78 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQYQQ--- 78 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHHHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHHHh---
Confidence 45677788899999998888877775432 1111 122222222233332211000 00000000
Q ss_pred HHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhC------CCChHHHHHHHhccCCCC--CCccc
Q psy8243 381 SIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD------PSLTEPVVKCLLKFWPKT--HSPKE 452 (624)
Q Consensus 381 SIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD------psLt~~vi~~LLk~WP~t--ns~KE 452 (624)
. + ..+.++.+..++..|+++.....-.. .++..|+..+...+ |.+...++..+- -. +....
T Consensus 79 -~---~-~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 79 -R---W-LAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp -H---H-HTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred -h---h-hcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 0 1 13567888888999999987766544 78999988887653 333343433331 11 11111
Q ss_pred ccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCC--cHHHHHHHHHhhc
Q psy8243 453 SVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSS--HFQVAERALYYWN 508 (624)
Q Consensus 453 s~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~--hfqVAErAL~~w~ 508 (624)
..-+.-+..+.+...++.+......++..+..++.++ +..|-..|+..+.
T Consensus 148 ------~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (462)
T 1ibr_B 148 ------ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (462)
T ss_dssp ------HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3455566666665555666777788999999999998 7888777776654
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.35 E-value=27 Score=38.69 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=116.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC-----
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA----- 387 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa----- 387 (624)
++..|...+.++|++.|......|.++..++.. ...++.+.+-..+...+.. ....-....+++++.+.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455566678899999999888888888777654 3444543444444443332 223344567777777765310
Q ss_pred ------CC-----ChHHHHHHHHHHhhhccccccc------ccchhhHHHHHHHHHhhCC-CChHHHHHHHhccCCCCC-
Q psy8243 388 ------LP-----LKDEHKFFLLKVLLPLHKVKSL------SVYHPQLAYCVVQFLEKDP-SLTEPVVKCLLKFWPKTH- 448 (624)
Q Consensus 388 ------~P-----LKeEhk~Fl~~VLLPLHk~k~l------~~Y~~qL~~cv~qFleKDp-sLt~~vi~~LLk~WP~tn- 448 (624)
.| .-..+...+..+++...+...- ......-..|+..+....+ .....++..+...--..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 0001112223334433332110 0112223344444443322 233444444432221111
Q ss_pred CcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcc--ccccccc
Q psy8243 449 SPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDN--ATVIVPI 526 (624)
Q Consensus 449 s~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n--~~~I~Pi 526 (624)
..+ ..-+.-+..+.+.+.++.+......+...+..++.++|..|-++|+..+.+ +...+..+ ....++.
T Consensus 384 ~~r-------~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 384 RNR-------EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGR--IADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHH-------HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH--HHHHHGGGSCTTTTHHH
T ss_pred hHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HHHHhhhhcCCHHHHHH
Confidence 112 223445667777766778888888899999999999999999988765432 22233221 1334555
Q ss_pred chHHHHHhhhccchHHHHHHH
Q psy8243 527 MFPALYRNSKTHWNKEKERMR 547 (624)
Q Consensus 527 I~paL~~~sk~HWn~tVr~la 547 (624)
++|.|.+..... ..|+..+
T Consensus 455 ~l~~l~~~l~~~--~~v~~~a 473 (861)
T 2bpt_A 455 VVQACLIGLQDH--PKVATNC 473 (861)
T ss_dssp HHHHHHHHHTSC--HHHHHHH
T ss_pred HHHHHHHHhccC--hHHHHHH
Confidence 666666555554 4455443
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.82 E-value=30 Score=38.50 Aligned_cols=223 Identities=10% Similarity=0.095 Sum_probs=115.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC-----
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA----- 387 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa----- 387 (624)
++..+...+.++|++.|.....+|.++...+.. .+.++.+.+-..+..... .....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455667778889999998888888887776543 344444233333333221 1222233455666666554210
Q ss_pred ------------CCChHH---HHHHHHHHhhhccccc------ccccchhhHHHHHHHHHhhCC-CChHHHHHHHhccCC
Q psy8243 388 ------------LPLKDE---HKFFLLKVLLPLHKVK------SLSVYHPQLAYCVVQFLEKDP-SLTEPVVKCLLKFWP 445 (624)
Q Consensus 388 ------------~PLKeE---hk~Fl~~VLLPLHk~k------~l~~Y~~qL~~cv~qFleKDp-sLt~~vi~~LLk~WP 445 (624)
.+...- +..-+...++.+.... .-......-..|+..+.+..+ .....++..+....-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~ 376 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHcc
Confidence 011111 1111222333333211 001112233344444433322 234445554443322
Q ss_pred CCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcc--cccc
Q psy8243 446 KTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDN--ATVI 523 (624)
Q Consensus 446 ~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n--~~~I 523 (624)
-.+.... -.-+.-+..+.+.+.++.+......++..+-.+++++|..|-.+|+..+.+ +...+... ....
T Consensus 377 ~~~~~~r------~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 377 NPDWRYR------DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVY 448 (876)
T ss_dssp CSSHHHH------HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTT
T ss_pred CCChHHH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHH
Confidence 1111111 234445666777777777777788889999999999999999999887653 22332221 2234
Q ss_pred cccchHHHHHhhhccchHHHHHHH
Q psy8243 524 VPIMFPALYRNSKTHWNKEKERMR 547 (624)
Q Consensus 524 ~PiI~paL~~~sk~HWn~tVr~la 547 (624)
++.+++.|.+....+ ..|+..+
T Consensus 449 l~~~l~~l~~~l~~~--~~v~~~a 470 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE--PRVASNV 470 (876)
T ss_dssp HHHHHHHHHHHTTSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHH
Confidence 666777777766554 4555443
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.21 E-value=12 Score=42.49 Aligned_cols=212 Identities=12% Similarity=0.114 Sum_probs=111.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHH-HHHHHHHHHhcCCCCChHH
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGFALPLKDE 393 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaE-LLeILgSIInGFa~PLKeE 393 (624)
+.+++....|+|+..|......|..++. -.+.- ..+..++... +.....+-. ..-.|...++..-..+.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~~----~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFN----NYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHHHH----HHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCCHH----HHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 5566666679999999999998887653 12111 1111112110 111111110 0112223333222356788
Q ss_pred HHHHHHHHhhhcccccccccchhhHHHHHHHHHhhC-----CCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHH
Q psy8243 394 HKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-----PSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEI 468 (624)
Q Consensus 394 hk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD-----psLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeI 468 (624)
.+..++..|+++...+. ..-..+++.|+......+ |.+...++..+ -..+..-. -.-+.-+..+
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r------~~al~~L~~i 155 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTC------EGAFGALQKI 155 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHH------HHHHHHHHHH
Confidence 99999999999877554 345788999999988776 23333333322 11111111 2234445555
Q ss_pred HhccChHHHH-----HHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcccccccccchHHHHHhhhccchHHH
Q psy8243 469 LDVIEPAEFQ-----KVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEK 543 (624)
Q Consensus 469 Le~~~p~~f~-----~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~I~PiI~paL~~~sk~HWn~tV 543 (624)
++..++. +. .....++..+.+++++++..|-..|+..+.+ ++....+.-...++-+++.|.+..... +..|
T Consensus 156 ~~~~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~v 231 (852)
T 4fdd_A 156 CEDSAEI-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGDE-EPEV 231 (852)
T ss_dssp HHHHTTH-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHH
T ss_pred HHHhHHH-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCCC-CHHH
Confidence 5544332 22 2245677777788899999998888877642 211111111122344556665544332 3455
Q ss_pred HHHHHH
Q psy8243 544 ERMRDR 549 (624)
Q Consensus 544 r~la~n 549 (624)
|..+..
T Consensus 232 r~~a~~ 237 (852)
T 4fdd_A 232 RKNVCR 237 (852)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 13
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.97 E-value=16 Score=40.50 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=85.7
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHH
Q psy8243 316 LQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHK 395 (624)
Q Consensus 316 ~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk 395 (624)
..++..+..+|+.=|..-.++|..+-..-. . ..+-+.+..|+.+.+ ..-..++...+|.+...|+ |-.+..
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v-----~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~-~~~~~~- 423 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVNGNN-I-----RGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYA-PSKRWH- 423 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-T-----HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSC-CCHHHH-
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHccccc-H-----HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhC-ccHHHH-
Confidence 457777788888777777777666644211 1 234455666665532 2334567788888888775 333322
Q ss_pred HHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHH
Q psy8243 396 FFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEIL 469 (624)
Q Consensus 396 ~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeIL 469 (624)
..+|+-+.+... .....+...++.+.+.++|.+-..++..|..+...... .+.....-+..|+|..+.+
T Consensus 424 ---v~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~-~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 424 ---IDTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYS-QQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp ---HHHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCS-CSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHhhhHHHh
Confidence 345556666554 33456788999999999999999888888777663211 1111122245666666544
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.73 E-value=17 Score=40.42 Aligned_cols=221 Identities=10% Similarity=0.064 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHH
Q psy8243 280 AIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGL---RAYIRKQIN 356 (624)
Q Consensus 280 ~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~l---R~fIRk~I~ 356 (624)
..|..-......+....... .+.....+++ .++..|+..+..++++-|......|.++-..+... ..++...+
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~--~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l- 456 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGP--DKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV- 456 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSS--CHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH-
T ss_pred CChhHHHHHHHHHHHHHcCC--CHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH-
Confidence 34554444444444443321 1233334443 36677888888888888887777777766543221 22332222
Q ss_pred HHHHHhhhccCCcccHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHhhhccccccc-ccchhhHHHHHHHHHhhCCC
Q psy8243 357 NIFYRFIYETEHHNGIAELLEILGSIINGFA----LPLKDEHKFFLLKVLLPLHKVKSL-SVYHPQLAYCVVQFLEKDPS 431 (624)
Q Consensus 357 nif~~FIye~e~hnGIaELLeILgSIInGFa----~PLKeEhk~Fl~~VLLPLHk~k~l-~~Y~~qL~~cv~qFleKDps 431 (624)
..+.+.+.+. ..--......++.++.++. ..+.+ +..-+...|+++.+.... .........++..+++..+.
T Consensus 457 ~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 457 QACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYN-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGG-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHH-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 2233333221 1111223445555665543 11222 222234556666553221 12344455666666665554
Q ss_pred ChHH--------HHHHHhccCCCC----C-CcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcH-
Q psy8243 432 LTEP--------VVKCLLKFWPKT----H-SPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHF- 497 (624)
Q Consensus 432 Lt~~--------vi~~LLk~WP~t----n-s~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hf- 497 (624)
-... ++..+.+..+.. + +.++...--+...+.-+..++..++. ++......++..+-..+++.+.
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~ 612 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSA 612 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCC
Confidence 3222 222222222210 0 00000000012355566666666654 5667778888888888888766
Q ss_pred HHHHHHHHhhc
Q psy8243 498 QVAERALYYWN 508 (624)
Q Consensus 498 qVAErAL~~w~ 508 (624)
.|-+.++..+.
T Consensus 613 ~v~~~~~~~l~ 623 (861)
T 2bpt_A 613 FIEDDVFYAIS 623 (861)
T ss_dssp GTHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777777654
No 15
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.56 E-value=64 Score=35.70 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy8243 257 EVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTT 336 (624)
Q Consensus 257 eiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~Lkti 336 (624)
+.-..+++-++|...++|..++- |.+-++ -.+ ++.-.-.+.+--|..++.++|+.|++.++..
T Consensus 61 ~l~~~Ai~a~lDLcEDed~~IR~------qaik~L-p~~----------ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~s 123 (507)
T 3u0r_A 61 ELADSAINAQLDLCEDEDVSIRR------QAIKEL-PQF----------ATGENLPRVADILTQLLQTDDSAEFNLVNNA 123 (507)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHH------HHHHHG-GGG----------CCTTCHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccHHHHH------HHHHhh-HHH----------hhhhhhhhHHHHHHHHHhccchHHHHHHHHH
Confidence 45567888888988788877643 333333 122 2211123355558889999999999999999
Q ss_pred HHHHHhhh
Q psy8243 337 LHRIYGKF 344 (624)
Q Consensus 337 LhrIY~Kf 344 (624)
|..++..-
T Consensus 124 L~sllk~D 131 (507)
T 3u0r_A 124 LLSIFKMD 131 (507)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88887643
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.38 E-value=25 Score=35.62 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=101.2
Q ss_pred hccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhc
Q psy8243 307 KKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING 385 (624)
Q Consensus 307 k~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInG 385 (624)
+..++...+..|+.++.++|+.-|...-..|..+-......|..+.. .+-..+.+++.......-....+..++.+..+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 34445567888999999999999999889998887765556655433 34456666665433344455677788888865
Q ss_pred CCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhC---------CCChHHHHHHHhccCCCCCCccccccc
Q psy8243 386 FALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD---------PSLTEPVVKCLLKFWPKTHSPKESVVY 456 (624)
Q Consensus 386 Fa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD---------psLt~~vi~~LLk~WP~tns~KEs~~~ 456 (624)
-....+.....-....|+.+.+...-. -......++..+.... ......++..| ++ ...+ +
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~-----~~~~--v- 250 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MH-----NDYK--V- 250 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TC-----SCHH--H-
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CC-----Cchh--H-
Confidence 411111111122334555555543211 1122223333333222 23444444433 21 1111 0
Q ss_pred ccchHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 457 SQVMFLNELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 457 ~~VlFLnELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
+..-+.-|..+... .+.....+. ..+...|..++.+++..|-+.|+....
T Consensus 251 -~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 251 -VSPALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp -HHHHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 01223333333321 122222222 146777888889999999988888764
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=78.18 E-value=18 Score=40.21 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=99.3
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHH-HHHHHHHHHh---------
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIIN--------- 384 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaE-LLeILgSIIn--------- 384 (624)
+.+++..+.|+|+..|......|..+... ...-+...+-.++ -.......+-. ...+|...+.
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~---~~~~~~~~L~~~l----~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSRVL----ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc---ChhhHHHHHHHHH----hCCCCCHHHHHHHHHHHHHhccccchHhHHH
Confidence 45677778889999998888877775432 0111111121121 11111111111 1112222221
Q ss_pred ---cCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhC------CCChHHHHHHHhccCCCCCCcccccc
Q psy8243 385 ---GFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD------PSLTEPVVKCLLKFWPKTHSPKESVV 455 (624)
Q Consensus 385 ---GFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD------psLt~~vi~~LLk~WP~tns~KEs~~ 455 (624)
.+ ..+.++.+..++..|+.......-.. .++..|+..+...+ |.+...++..+-. +..+....
T Consensus 76 ~~~~w-~~l~~~~~~~ik~~ll~~l~~~~~~~--~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~--~~~~~~~r--- 147 (876)
T 1qgr_A 76 YQQRW-LAIDANARREVKNYVLHTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTN--PNSTEHMK--- 147 (876)
T ss_dssp HHHHH-HTSCHHHHHHHHHHHHHHTTTCCSSS--CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--TTCCHHHH---
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhC--CCCCHHHH---
Confidence 11 13557788888888888877655443 67888887776542 3333333333311 00011111
Q ss_pred cccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCC--cHHHHHHHHHhhc
Q psy8243 456 YSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSS--HFQVAERALYYWN 508 (624)
Q Consensus 456 ~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~--hfqVAErAL~~w~ 508 (624)
..-+.-+..+++.+.++.+......++..+..++.++ +..|-..|+..+.
T Consensus 148 ---~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (876)
T 1qgr_A 148 ---ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (876)
T ss_dssp ---HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 3455667777777777888888999999999999987 7888777777654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.41 E-value=14 Score=34.04 Aligned_cols=188 Identities=18% Similarity=0.108 Sum_probs=97.5
Q ss_pred hhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHH
Q psy8243 305 IAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 383 (624)
Q Consensus 305 ~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSII 383 (624)
..+..++...+..|+.++.++|+.-|......|..+-......|..+.+ ..-..+.+.+... ...-....+..++.+.
T Consensus 36 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 36 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIA 114 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 3444555567889999999999999999888888887654555554433 3445566666532 2333445566666665
Q ss_pred hcCCCCChHHHHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhCCCC--------hHHHHHHHhccCCCCCCc
Q psy8243 384 NGFALPLKDEHKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSL--------TEPVVKCLLKFWPKTHSP 450 (624)
Q Consensus 384 nGFa~PLKeEhk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsL--------t~~vi~~LLk~WP~tns~ 450 (624)
.+ .++.+..+ ...|+.+.+...- .....-..++..+...++.. +-+.+-.+++. +.
T Consensus 115 ~~-----~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~ 183 (252)
T 4hxt_A 115 SG-----PDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-----TD 183 (252)
T ss_dssp TS-----CHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----SC
T ss_pred cC-----CHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-----CC
Confidence 43 22333322 3466666665542 22344444444444433322 11222233321 11
Q ss_pred ccccccccchHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q psy8243 451 KESVVYSQVMFLNELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWNN 509 (624)
Q Consensus 451 KEs~~~~~VlFLnELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~N 509 (624)
.+ +. ..-+.-|..+.. -+++....+. ..+...|.+.+.+.+..|.+.|+....|
T Consensus 184 ~~--v~--~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 184 SE--VQ--KEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HH--HH--HHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HH--HH--HHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 11 00 111222222221 1222222221 2356677777788888888888777553
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=75.98 E-value=93 Score=33.90 Aligned_cols=175 Identities=10% Similarity=0.114 Sum_probs=104.7
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChH
Q psy8243 313 KFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 392 (624)
Q Consensus 313 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKe 392 (624)
..+..|.+.+.+.|..-|..+-.-++++-.+|...- ..+-+.+.+++... ..+-..|.+..++.|+.++.. +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 367778888888899888888777888777765321 23335556655432 233456777888888887632 222
Q ss_pred HHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhcc
Q psy8243 393 EHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVI 472 (624)
Q Consensus 393 Ehk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~ 472 (624)
.-...+.. ....-....-......++..|...-+. ...+++.+++.+...++.-+ ...|.-+..+....
T Consensus 427 ~~v~~L~~----~l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr------~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 427 SIIATLCE----NLDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQ------LTLLTAIVKLFLKK 495 (591)
T ss_dssp TTHHHHHH----TTTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHH------HHHHHHHHHHHTTC
T ss_pred HHHHHHHH----HHHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHH------HHHHHHHHHHHhcC
Confidence 22222222 222111112244556666666554433 57899999988775444334 56677777777655
Q ss_pred ChHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHhhc
Q psy8243 473 EPAEFQKVMVPLFHQIAKCV-SSSHFQVAERALYYWN 508 (624)
Q Consensus 473 ~p~~f~~v~~pLFk~La~Ci-~S~hfqVAErAL~~w~ 508 (624)
+.. ....... .+..|. +|.+..|=+||..+|.
T Consensus 496 p~~-~~~~i~~---ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 496 PSE-TQELVQQ---VLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp CST-THHHHHH---HHHHHHTTCCCHHHHHHHHHHHT
T ss_pred chH-HHHHHHH---HHHHhhhcCCChHHHHHHHHHHH
Confidence 432 2233333 344554 5799999999999875
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=72.73 E-value=49 Score=29.88 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=89.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCCh
Q psy8243 313 KFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 391 (624)
Q Consensus 313 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIR-k~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLK 391 (624)
.+...|+.++.++|+.-|......|..+-..-...+..+. ...-..+.+++... ...-....+..++.+..+ .
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~-----~ 85 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG-----G 85 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS-----C
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC-----C
Confidence 3455688889999999998888888887644444443333 23445556665443 233344566777776654 2
Q ss_pred HHHHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhCCC---------ChHHHHHHHhccCCCCCCcccccccc
Q psy8243 392 DEHKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPS---------LTEPVVKCLLKFWPKTHSPKESVVYS 457 (624)
Q Consensus 392 eEhk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDps---------Lt~~vi~~LLk~WP~tns~KEs~~~~ 457 (624)
++.+..+ ...|+.+.+..... -...-..++..+...++. ....+++. ++. +..+ +.
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~-----~~~~--v~- 155 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSS-----PNEQ--IL- 155 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTC-----SCHH--HH-
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH-HcC-----CCHH--HH-
Confidence 3333332 34667776665421 122333344444333222 22222222 221 1111 00
Q ss_pred cchHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 458 QVMFLNELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 458 ~VlFLnELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
..-+.-|..+... +++.-..+. ......|.+.+.+.+..|.+.|+..+.
T Consensus 156 -~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 156 -QEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp -HHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1111222222221 122222221 235677778888888888888887764
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.02 E-value=45 Score=39.41 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=94.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhh------hHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGL------RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 387 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~l------R~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa 387 (624)
++..|+..+.+++++-|......|..|....... .......+-..+.+.+.+.....-....+++++.+...+.
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 4445666666666666666666666655443321 1112223333334444322333445667888888876443
Q ss_pred CCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCC-----CChHHHHHHHhcc-CCCCCCcccccccccchH
Q psy8243 388 LPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDP-----SLTEPVVKCLLKF-WPKTHSPKESVVYSQVMF 461 (624)
Q Consensus 388 ~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDp-----sLt~~vi~~LLk~-WP~tns~KEs~~~~~VlF 461 (624)
..+.+ +..-+...|+++...+.- .....-..|+..++..-+ .+...++.+|.+- |+ ..+ . ..
T Consensus 167 ~~l~~-~~~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~---~~r----~---~a 234 (1230)
T 1u6g_C 167 GLLVN-FHPSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSM---STT----R---TY 234 (1230)
T ss_dssp SSCTT-THHHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSS---CSC----T---TH
T ss_pred hHHHH-HHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCch---hHH----H---HH
Confidence 33333 223345667777665543 345556677777765433 2344555555432 21 111 1 12
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 462 LNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 462 LnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
+.-+..+...++ ..|......++..+-+++..++-.|-+.|+..|.
T Consensus 235 ~~~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 235 IQCIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 280 (1230)
T ss_dssp HHHHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 444555555444 3566666677777777777777666566555543
No 22
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=66.69 E-value=1.4e+02 Score=34.78 Aligned_cols=187 Identities=9% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh---hhHHHHHH---HHHHHHHhhhc-------cCCc---ccHHHHHH
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG---LRAYIRKQ---INNIFYRFIYE-------TEHH---NGIAELLE 377 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~---lR~fIRk~---I~nif~~FIye-------~e~h---nGIaELLe 377 (624)
++.+|...+..-+..++..+-..+-+|...... ...++..- +.+.+...+.. .... ..+..+|+
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~ 669 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIK 669 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHH
Confidence 666677777878888887776666666554331 12222221 11112211111 0011 23445677
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhhhcccc----------------------cccccchhhHHHHHHHHHhhCCC----
Q psy8243 378 ILGSIINGFALPLKDEHKFFLLKVLLPLHKV----------------------KSLSVYHPQLAYCVVQFLEKDPS---- 431 (624)
Q Consensus 378 ILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~----------------------k~l~~Y~~qL~~cv~qFleKDps---- 431 (624)
.++++.+++...+.+.-...+.+.+ .+... +.+....+.+..++..|.++.+.
T Consensus 670 ~~~~~~~~l~~~f~p~~~~i~~~~l-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~ 748 (1049)
T 3m1i_C 670 TNVAVCTSMGADFYPQLGHIYYNML-QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDV 748 (1049)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7777666543333221111111111 11110 12233455666677777776532
Q ss_pred ---ChHHHHHHHhccCCC-CCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh-----C--CCcHHHH
Q psy8243 432 ---LTEPVVKCLLKFWPK-THSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCV-----S--SSHFQVA 500 (624)
Q Consensus 432 ---Lt~~vi~~LLk~WP~-tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci-----~--S~hfqVA 500 (624)
+.+.++..++.-.-. ..+.++ ..+|+-+..++..++ +.+...+..++..+..|. . +++..|.
T Consensus 749 ~~~~~~~~l~~ll~~~~~~~~~~~~------~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~ 821 (1049)
T 3m1i_C 749 VKVLVEPLLNAVLEDYMNNVPDARD------AEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHR 821 (1049)
T ss_dssp HHHTHHHHHHHHHHHHHHSCGGGCC------THHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccc------HHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHH
Confidence 223444444443321 112345 668888888887665 345555566666666664 2 4577788
Q ss_pred HHHHHhhc
Q psy8243 501 ERALYYWN 508 (624)
Q Consensus 501 ErAL~~w~ 508 (624)
+..+.+..
T Consensus 822 ~~~f~ll~ 829 (1049)
T 3m1i_C 822 VEFYKLLK 829 (1049)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 23
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=65.75 E-value=71 Score=37.74 Aligned_cols=182 Identities=10% Similarity=0.107 Sum_probs=89.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChH
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKF-LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKD 392 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf-~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKe 392 (624)
-+.+|++.+.|+|+..|..-..-|...+.+- ........+.+-..+.+.+... ...-=......++.+..+.. +
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~----~ 81 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVK----E 81 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCC----H
Confidence 3677889999999999986655554443221 1111111222223333444321 11111124556677776542 3
Q ss_pred HHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCC----------hHHHHHHHhccCC-CCCCcccccccccchH
Q psy8243 393 EHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSL----------TEPVVKCLLKFWP-KTHSPKESVVYSQVMF 461 (624)
Q Consensus 393 Ehk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsL----------t~~vi~~LLk~WP-~tns~KEs~~~~~VlF 461 (624)
++...+...|+.......-.. ...-..|+.++++.-+.- ...++..|++.-- ..+.... .--
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~------~~a 154 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ------LEA 154 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH------HHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH------HHH
Confidence 455555666666654443322 334456666666544432 2333333332111 0011111 223
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 462 LNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 462 LnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
+.-+.++++..+ ..+......++..+..++.+++..|-++|+....
T Consensus 155 l~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 155 LDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp HHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 333444443222 2233355778888888889999999888876544
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=65.25 E-value=72 Score=36.83 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=45.8
Q ss_pred CChhhhhccCCHHHHHHHhhhcCCCC-----HHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHhhhccCCccc
Q psy8243 301 FQPNIAKKYIDQKFVLQLLDLFDSED-----PRERDFLKTTLHRIYGKF----LGLRAYIRKQINNIFYRFIYETEHHNG 371 (624)
Q Consensus 301 f~p~~ak~~Id~~Fi~~Ll~lfdSeD-----pRERd~LktiLhrIY~Kf----~~lR~fIRk~I~nif~~FIye~e~hnG 371 (624)
+.......|+.+ .+.+|+.+++... ..|.+.+-..|.++-..+ ..+-.-+-..+.+.+.+...+.+...-
T Consensus 537 ~~~~~l~p~l~~-ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 537 FHKEDISNSTEI-LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp SCGGGTTTTHHH-HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred ccHHHhhhhHHH-HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 334445566644 7778888887752 225567777776665433 322222333333444333222222222
Q ss_pred HHHHHHHHHHHHhc
Q psy8243 372 IAELLEILGSIING 385 (624)
Q Consensus 372 IaELLeILgSIInG 385 (624)
...++|.+++|++.
T Consensus 616 ~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 616 THYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 34689999999986
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.74 E-value=78 Score=31.88 Aligned_cols=208 Identities=12% Similarity=0.120 Sum_probs=102.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcC-------
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF------- 386 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGF------- 386 (624)
+..|...+.++|+.-|.....+|..+.+++.. ++.++...+-..+..... .....-....+++++.+...-
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455678889999999888888888877654 233333122222222221 122222345667766665431
Q ss_pred ----------CCCChHHHHHHHHHHhhhc----cccc------ccccchhhHHHHHHHHHhhCCCC-hHHHHHHHhccCC
Q psy8243 387 ----------ALPLKDEHKFFLLKVLLPL----HKVK------SLSVYHPQLAYCVVQFLEKDPSL-TEPVVKCLLKFWP 445 (624)
Q Consensus 387 ----------a~PLKeEhk~Fl~~VLLPL----Hk~k------~l~~Y~~qL~~cv~qFleKDpsL-t~~vi~~LLk~WP 445 (624)
..+.....+.+ ...++|. .... .-......-..|+..+...-+.- ...++..+...--
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~ 376 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred ccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 01122111111 1233343 2211 00011233444555555544432 2233333322211
Q ss_pred CCC-CcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcc--ccc
Q psy8243 446 KTH-SPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDN--ATV 522 (624)
Q Consensus 446 ~tn-s~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n--~~~ 522 (624)
-.+ ..| ..-+.-+..+.+.+.++.+......++..+..+++++|..|-.+|+....+ +...+.+. ...
T Consensus 377 ~~~~~~r-------~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~--~~~~~~~~~~~~~ 447 (462)
T 1ibr_B 377 NPDWRYR-------DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDV 447 (462)
T ss_dssp CSSHHHH-------HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHH--HHHHGGGGCCSTT
T ss_pred CCChHHH-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHhcccccccHH
Confidence 111 112 234445666666665555555667788889999999999999888887652 22333332 122
Q ss_pred ccccchHHHHH
Q psy8243 523 IVPIMFPALYR 533 (624)
Q Consensus 523 I~PiI~paL~~ 533 (624)
.++.+++.|.+
T Consensus 448 ~l~~ll~~Ll~ 458 (462)
T 1ibr_B 448 YLAPLLQCLIE 458 (462)
T ss_dssp THHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 35555555543
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=62.08 E-value=38 Score=35.83 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=99.5
Q ss_pred CHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCC
Q psy8243 311 DQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 389 (624)
Q Consensus 311 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~P 389 (624)
+...+..|+.++.++|+.-|......|..|-+.-...|..+.. .+-..+.+.+.. ....-....+..++.+..+-...
T Consensus 171 ~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~ 249 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQ 249 (530)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCC
Confidence 3445677888888899999999888888887655555555432 334455565544 22333455677788887764222
Q ss_pred ChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCC---------CChHHHHHHHhccCCCCCCcccccccccch
Q psy8243 390 LKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDP---------SLTEPVVKCLLKFWPKTHSPKESVVYSQVM 460 (624)
Q Consensus 390 LKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDp---------sLt~~vi~~LLk~WP~tns~KEs~~~~~Vl 460 (624)
.......-....|+.|.+...- .-......++..+....+ .+...++.. +++ +..+ +. ..
T Consensus 250 ~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~-----~~~~--v~--~~ 318 (530)
T 1wa5_B 250 PDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH-----ESTL--VQ--TP 318 (530)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC-----SCHH--HH--HH
T ss_pred CcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC-----CChh--hH--HH
Confidence 2333333345677777665432 112233444444443332 333333333 321 1111 00 11
Q ss_pred HHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhcc
Q psy8243 461 FLNELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWNN 509 (624)
Q Consensus 461 FLnELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~N 509 (624)
-+.-|..+... ++.....+. ..+...|..++.+++..|-+.|+..+.|
T Consensus 319 a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 319 ALRAVGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22233333221 122222222 2466778888899999999888887653
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=59.70 E-value=1e+02 Score=28.06 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHH
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDE 393 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIR-k~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeE 393 (624)
+..|+.++.++|+..|......|..+-......+..+. ..+-..+.+++.... ..-....+..++.+..+ .++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-----~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASG-----PDE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcC-----ChH
Confidence 56789999999998888888888888665553444333 345556666665432 23344555666665543 133
Q ss_pred HHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhCCC---------ChHHHHHHHhccCCCCCCcccccccccc
Q psy8243 394 HKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPS---------LTEPVVKCLLKFWPKTHSPKESVVYSQV 459 (624)
Q Consensus 394 hk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDps---------Lt~~vi~~LLk~WP~tns~KEs~~~~~V 459 (624)
.+..+ ...|+.+.+...- .....-..++..+...++. ....++ .+++. +..+ +. .
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~-----~~~~--~~--~ 146 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLV-KLLTS-----TDSE--VQ--K 146 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH-HHTTC-----SCHH--HH--H
T ss_pred HHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH-HHHcC-----CCHH--HH--H
Confidence 33332 3466666665432 2233333444444433332 222222 22221 1111 00 1
Q ss_pred hHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 460 MFLNELEEILDVIEPAEFQK-VMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 460 lFLnELeeILe~~~p~~f~~-v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
.-+.-|..+... +++.... +.......|..++.+++..|.+.|+..+.
T Consensus 147 ~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 147 EAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 111122222211 2222111 12336677788888888888888887754
No 28
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=57.33 E-value=2.5e+02 Score=31.61 Aligned_cols=230 Identities=9% Similarity=0.067 Sum_probs=108.3
Q ss_pred hccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHH
Q psy8243 307 KKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKF---LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSII 383 (624)
Q Consensus 307 k~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf---~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSII 383 (624)
..|+ ...+..|+..++..+.+....+.+.+..|.... .....++..-+.-.+..+-.-.+....+..+++.+++|.
T Consensus 478 ~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 478 VPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp GGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3455 457778888888777777666666666665322 112234443332222211111112233456788888888
Q ss_pred hcCCCCChHHHHHHHHHHhhhccccc------------ccc----cchhhHHHHHHHHHhhC-CCCh-----HHHHHHHh
Q psy8243 384 NGFALPLKDEHKFFLLKVLLPLHKVK------------SLS----VYHPQLAYCVVQFLEKD-PSLT-----EPVVKCLL 441 (624)
Q Consensus 384 nGFa~PLKeEhk~Fl~~VLLPLHk~k------------~l~----~Y~~qL~~cv~qFleKD-psLt-----~~vi~~LL 441 (624)
......+.+.-... ...++.+.+.. ... .+.......+..+++.- .... ..++..++
T Consensus 557 ~~~g~~~~~~~~~i-~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~ 635 (852)
T 4fdd_A 557 TALQSGFLPYCEPV-YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 635 (852)
T ss_dssp HHHGGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHH
T ss_pred HHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHH
Confidence 75433222211111 11222222210 111 11111112222222111 1111 13455566
Q ss_pred ccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhcccc
Q psy8243 442 KFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNAT 521 (624)
Q Consensus 442 k~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~ 521 (624)
..|.-.++.= + .....-+.++...++ ++|.+.+..+...+.+.++...+.|...|..... .+...+...-.
T Consensus 636 ~~l~~~~~~v---r---~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg--~i~~~~~~~~~ 706 (852)
T 4fdd_A 636 QCMQDKMPEV---R---QSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIG--EISIQMGIEMQ 706 (852)
T ss_dssp HHTTCSSHHH---H---HHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHH--HHHHHHGGGGG
T ss_pred HHhCCCChhH---H---HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH--HHHHHhhHhHH
Confidence 6664322111 1 234455666665554 6888888899999999998888888776655433 22222322222
Q ss_pred cccccchHHHHHhhh-ccchHHHHHHH
Q psy8243 522 VIVPIMFPALYRNSK-THWNKEKERMR 547 (624)
Q Consensus 522 ~I~PiI~paL~~~sk-~HWn~tVr~la 547 (624)
..++.+++.|.+.-+ ...+.+++..+
T Consensus 707 p~~~~il~~L~~~l~~~~~~~~~~~~a 733 (852)
T 4fdd_A 707 PYIPMVLHQLVEIINRPNTPKTLLENT 733 (852)
T ss_dssp GGTHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCchHHHHH
Confidence 333444444444433 24455565433
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=56.06 E-value=1e+02 Score=31.00 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=95.1
Q ss_pred cCCH-HHHHHHhhhcCCC-CHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhc
Q psy8243 309 YIDQ-KFVLQLLDLFDSE-DPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 385 (624)
Q Consensus 309 ~Id~-~Fi~~Ll~lfdSe-DpRERd~LktiLhrIY~Kf~~lR-~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInG 385 (624)
.+.. ..+..|+.++.++ |+.-|.....+|..+...-...+ ..+...+-..+.+.+... ...--...+..|+.|..+
T Consensus 59 ~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~ 137 (450)
T 2jdq_A 59 VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGD 137 (450)
T ss_dssp HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccC
Confidence 3444 5788899999998 88888888888888876433322 233334445566655432 223334567777777764
Q ss_pred CCCCChHHHHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhC-CCC-------hHHHHHHHhccCCCCCCccc
Q psy8243 386 FALPLKDEHKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-PSL-------TEPVVKCLLKFWPKTHSPKE 452 (624)
Q Consensus 386 Fa~PLKeEhk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD-psL-------t~~vi~~LLk~WP~tns~KE 452 (624)
. ++.+..+ ...|+.+.+...-......-..++..++..+ |.. +-+.+..+++ +...+
T Consensus 138 ~-----~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~ 207 (450)
T 2jdq_A 138 S-----TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTD 207 (450)
T ss_dssp C-----HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHH
T ss_pred C-----HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHH
Confidence 2 2233222 3456666664222334556666777676543 332 1122223332 11111
Q ss_pred ccccccchHHHHHHHHHhcc---ChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 453 SVVYSQVMFLNELEEILDVI---EPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 453 s~~~~~VlFLnELeeILe~~---~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
........|..+ .++....+. ..++..|..++.+++..|.+.|+..+.
T Consensus 208 --------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 208 --------VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp --------HHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 111222222211 122222221 235667777888888888888877653
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=54.59 E-value=1.1e+02 Score=30.92 Aligned_cols=73 Identities=5% Similarity=-0.020 Sum_probs=51.1
Q ss_pred HHHHHhh-hcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhcC
Q psy8243 314 FVLQLLD-LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 386 (624)
Q Consensus 314 Fi~~Ll~-lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInGF 386 (624)
-+..|+. ++.|+++.=|...-.+|-.|-+.-...|..+.+ ..-..|.+.+............+..+++|++|+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 3566888 899999999999889999988777667666554 233455555554333445567778888888875
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=52.69 E-value=59 Score=34.25 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=100.3
Q ss_pred hhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHh
Q psy8243 306 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 384 (624)
Q Consensus 306 ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIIn 384 (624)
....++...+..|+.++.++++.-|......|..|-+.-...|..+.. .+-..+.+.+.......-.......++.+..
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 334444457888999999999999999999999887655556665544 2334455555443344455667777888877
Q ss_pred cCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhC---------CCChHHHHHHHhccCCCCCCcccccc
Q psy8243 385 GFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD---------PSLTEPVVKCLLKFWPKTHSPKESVV 455 (624)
Q Consensus 385 GFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKD---------psLt~~vi~~LLk~WP~tns~KEs~~ 455 (624)
+...+ ......-....|+.|.....-. ....-..++..+...+ ......++..| ++ +..+ ++
T Consensus 233 ~~~~~-~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~-----~~~~-v~ 303 (528)
T 4b8j_A 233 GKPQP-SFEQTRPALPALARLIHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LH-----PSPS-VL 303 (528)
T ss_dssp SSSCC-CHHHHTTHHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TC-----SCHH-HH
T ss_pred CCCCC-cHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cC-----CChh-HH
Confidence 65333 2222233456677776554321 1222223333222221 12333333333 21 1111 00
Q ss_pred cccchHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHhhcc
Q psy8243 456 YSQVMFLNELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSS-HFQVAERALYYWNN 509 (624)
Q Consensus 456 ~~~VlFLnELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~-hfqVAErAL~~w~N 509 (624)
.--+.-|..+.. -.+.....+. ..+...|..++.+. +..|.+.|+..+.|
T Consensus 304 ---~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 304 ---IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp ---HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 112222333322 1222222222 23456667777787 88888888876543
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=51.08 E-value=1.3e+02 Score=34.13 Aligned_cols=28 Identities=4% Similarity=0.102 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 481 MVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 481 ~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
...++..+..++..+|..|+..|+.+|.
T Consensus 815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~ 842 (963)
T 2x19_B 815 VKAVFQCAVLALKFPEAPTVKASCGFFT 842 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4667788888899999999999999885
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=44.87 E-value=59 Score=30.19 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=57.8
Q ss_pred cCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCC
Q psy8243 309 YIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA 387 (624)
Q Consensus 309 ~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInGFa 387 (624)
.++...+..|+.++.++|+.-|.....+|..+-......|..+.+ ..-..+.+.+... ...-....+..++.+..+.
T Consensus 50 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~- 127 (252)
T 4db8_A 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG- 127 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC-
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCC-
Confidence 344456788999999999888888888888887654555554443 2445666666442 3334455667777765542
Q ss_pred CCChHHH-HHH----HHHHhhhccccc
Q psy8243 388 LPLKDEH-KFF----LLKVLLPLHKVK 409 (624)
Q Consensus 388 ~PLKeEh-k~F----l~~VLLPLHk~k 409 (624)
+.. ..+ ....|+.+.+..
T Consensus 128 ----~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 128 ----NEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp ----HHHHHHHHHTTHHHHHHHGGGCS
T ss_pred ----chHHHHHHHCCCHHHHHHHHhCC
Confidence 112 222 234666666654
No 34
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=44.40 E-value=29 Score=30.76 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=56.7
Q ss_pred HHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHhCCCc
Q psy8243 423 VQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIE------PAEFQKVMVPLFHQIAKCVSSSH 496 (624)
Q Consensus 423 ~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~------p~~f~~v~~pLFk~La~Ci~S~h 496 (624)
.+++-.+..-+..++..+.++--.+.+.+. +.+|.-+.+|+.... -..|.+++..+|..+.+.....+
T Consensus 27 s~w~l~~~~~a~~iv~~i~~~l~~~~~~~K------L~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~ 100 (135)
T 4fu3_A 27 SLWLIHHRKHAGPIVSVWHRELRKAKSNRK------LTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGC 100 (135)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCTTTH------HHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchh------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334444444455555555555445555666 788888888874331 24578888999999988888888
Q ss_pred HHHHHHHHHhhcch
Q psy8243 497 FQVAERALYYWNNE 510 (624)
Q Consensus 497 fqVAErAL~~w~Ne 510 (624)
-+...+.+.+|...
T Consensus 101 k~kl~kll~iW~~r 114 (135)
T 4fu3_A 101 KKPLERLLNIWQER 114 (135)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC
Confidence 88899999999853
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=43.64 E-value=62 Score=35.31 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHh
Q psy8243 312 QKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN 384 (624)
Q Consensus 312 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIIn 384 (624)
...+..|++++..++...++.....+..|..++...|..+...+ ++++.......+..-++.++|-+-.
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L----~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATL----CENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHH----HHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHH----HHHHHhccCHHHHHHHHHHHHcccc
Confidence 34566788888888888888777788888888888775554333 4555444444555666777776533
No 36
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=42.27 E-value=25 Score=31.99 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCcccccccccchHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchh
Q psy8243 448 HSPKESVVYSQVMFLNELEEILDVIE-------PAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEY 511 (624)
Q Consensus 448 ns~KEs~~~~~VlFLnELeeILe~~~-------p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~ 511 (624)
++.|. +-+|.-+.+|+...- -..|.+++.++|..+....++.+-+..+|-+.+|....
T Consensus 53 ~~~kK------L~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~ 117 (142)
T 2km4_A 53 NTRRK------LLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERN 117 (142)
T ss_dssp CHHHH------HHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred Cccce------ehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Confidence 44666 777777888884332 24788899999999988888889999999999997654
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=41.77 E-value=1.4e+02 Score=31.52 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhc
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 385 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInG 385 (624)
+..|+..+.|+|+..|......|.++..+. ...+..+...+-..|.+++.......--.+.+..++.|..|
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 566777888888888877777777775432 22334444444556666664432233344566777776664
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=41.61 E-value=3.4e+02 Score=28.72 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhhcCCcc--cccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHH
Q psy8243 257 EVKRTALLEMVEYLTAQDVH--ISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLK 334 (624)
Q Consensus 257 eiKr~tL~ELvdyv~eeDe~--~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~Lk 334 (624)
-++.-.+--||+++..+|.+ -.+.+|- + ..+.. .++...+..++..-|-.|+.++.|+|+.-|...-
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~a----L----~nia~---~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~ 183 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWA----L----TNIAS---GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHH----H----HHHHT---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHH----H----HHHHc---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 34455666778888654433 2355563 1 11111 1233334445556788899999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHH-HHHHHHHhhhccCCccc----HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhccccc
Q psy8243 335 TTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNG----IAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVK 409 (624)
Q Consensus 335 tiLhrIY~Kf~~lR~fIRk~-I~nif~~FIye~e~hnG----IaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k 409 (624)
..|..|-+.-...|..|.+. .-..+...+........ ..-+...+..+..|-..........=...+|+.|....
T Consensus 184 ~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~ 263 (529)
T 3tpo_A 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC
Confidence 99999877667777777543 33455555543322221 12233344444444332222233232345566665554
Q ss_pred ccccchhhHHHHHHHHHhh---------CCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHH
Q psy8243 410 SLSVYHPQLAYCVVQFLEK---------DPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKV 480 (624)
Q Consensus 410 ~l~~Y~~qL~~cv~qFleK---------DpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v 480 (624)
.-.. ...-..|+...... +......++..| ++ .+..-. ..-+.-|..|... +++.-..+
T Consensus 264 ~~~v-~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~---~~~~v~------~~a~~aL~nl~~~-~~~~~~~i 331 (529)
T 3tpo_A 264 DPEV-LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GA---TELPIV------TPALRAIGNIVTG-TDEQTQKV 331 (529)
T ss_dssp CHHH-HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TC---SCHHHH------HHHHHHHHHHTTS-CHHHHHHH
T ss_pred cHHH-HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cC---CChhHH------HHHHHHHHHHHcc-chHHHHHH
Confidence 3221 11222232222221 223334444333 21 111111 1223333333321 22222222
Q ss_pred H-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 481 M-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 481 ~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
. ......|..++.|++-.|-+.|+..+.
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 224556777888999888887776654
No 39
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=35.60 E-value=3.7e+02 Score=27.34 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=99.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHhhhccCCcc-cHH-HHHHHHHHHHhcCCCCC
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHN-GIA-ELLEILGSIINGFALPL 390 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~lR~fIRk~I~nif~~FIye~e~hn-GIa-ELLeILgSIInGFa~PL 390 (624)
-+.-|+++++..|+.=+..-.-+|-.+-..-. ..| +..+.+.|=++|.-...-| +|+ -.+++++.++-| .||
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~--vpL 108 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLVKD--VPM 108 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT--CCB
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CCC
Confidence 45668888999998766555455555443221 122 2234455555553322222 332 478999999998 688
Q ss_pred hHHHHHHHHHHhhhcccccc--cccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHH
Q psy8243 391 KDEHKFFLLKVLLPLHKVKS--LSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEI 468 (624)
Q Consensus 391 KeEhk~Fl~~VLLPLHk~k~--l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeI 468 (624)
.++.-.-+.++|.-+.+.+. +..|-.....-+ +=-+++..++..+.+.=-..|..=+ .+=|.-+.+|
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~~~~~~V~~~l~sLl~Skd~~vK------~agl~~L~ei 177 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPLEDSKLVRTYINELVVSPDLYTK------VAGFCLFLNM 177 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBSCCCHHHHHHHHHHHTCSSHHHH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----CcccchHHHHHHHHHHHhCCChhHH------HHHHHHHHHh
Confidence 88777778888888888543 222222211111 2223334444444333311111112 4444444444
Q ss_pred HhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 469 LDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 469 Le~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
...-++. .+...+|.-+...++|.+.-+.|+||....
T Consensus 178 a~~S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 178 LNSSADS---GHLTLILDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp GGGCSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred hcccCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4333222 245667888889999999999999998765
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=34.60 E-value=4.9e+02 Score=28.44 Aligned_cols=181 Identities=14% Similarity=0.133 Sum_probs=88.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHH---HHHHHHHHhhh----------ccCCcccHHHHHHHH
Q psy8243 313 KFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK---QINNIFYRFIY----------ETEHHNGIAELLEIL 379 (624)
Q Consensus 313 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk---~I~nif~~FIy----------e~e~hnGIaELLeIL 379 (624)
.|+..|..++...|+.=+......|..|...-......+++ .+.+.+.+.+. .....-+-.-+|+++
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 35666888888899888877777777776543322222222 12233333221 122334555678888
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCC--CChHHHHHHHhccCCCCCCcccccccc
Q psy8243 380 GSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDP--SLTEPVVKCLLKFWPKTHSPKESVVYS 457 (624)
Q Consensus 380 gSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDp--sLt~~vi~~LLk~WP~tns~KEs~~~~ 457 (624)
+.+..+-. .+.++...++.+++=++-..++. =..-+..|+..++.-.+ .+...++..|.++ ..++.-+ +.
T Consensus 259 ~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~~~--~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~--L~~~d~~---vr 330 (618)
T 1w63_A 259 RILGRNDD-DSSEAMNDILAQVATNTETSKNV--GNAILYETVLTIMDIKSESGLRVLAINILGRF--LLNNDKN---IR 330 (618)
T ss_dssp HHHTTTCH-HHHHTTHHHHHHHHHTSCCSSTH--HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH--HTCSSTT---TH
T ss_pred HHhCCCCH-HHHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HhCCCCc---hH
Confidence 77765310 01112223444443333222221 12233455555554332 2222334444433 1222222 11
Q ss_pred cchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhh
Q psy8243 458 QVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYW 507 (624)
Q Consensus 458 ~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w 507 (624)
-.-|.-|..+... .|.-+ .+....+-.|+.++...|-.+|+.+.
T Consensus 331 -~~aL~~L~~i~~~-~p~~~----~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 331 -YVALTSLLKTVQT-DHNAV----QRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp -HHHHHHHHHHHHH-HHHHH----GGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhh-CHHHH----HHHHHHHHHHccCCChhHHHHHHHHH
Confidence 2334555555532 22222 33445677888888889999998864
No 41
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.49 E-value=71 Score=29.83 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCcccccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhh-cCCCCHHHHH
Q psy8243 253 LKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDL-FDSEDPRERD 331 (624)
Q Consensus 253 ~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~l-fdSeDpRERd 331 (624)
+...++|+.+-.=|-||+...|... . ++.+=+ +.+|.+.+ .||..++.. |+. .++||+
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~E--a----~~~l~e-----L~~p~~~~---------~~V~~~I~~aldr-k~~ere 62 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNE--V----AEMLRD-----LNLGEMKS---------GVPVLAVSLALEG-KASHRE 62 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHH--H----HHHHHH-----HTCSGGGG---------HHHHHHHHHHHTS-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHH--H----HHHHHH-----hCCcccHH---------HHHHHHHHHHHcC-CHHHHH
Confidence 3456788877777778887654321 1 112222 33555544 377777775 554 579999
Q ss_pred HHHHHHHHHHhhhhhhhH
Q psy8243 332 FLKTTLHRIYGKFLGLRA 349 (624)
Q Consensus 332 ~LktiLhrIY~Kf~~lR~ 349 (624)
.+-.+|+.+|++.+....
T Consensus 63 ~~s~LL~~L~~~~ls~~~ 80 (165)
T 2rg8_A 63 MTSKLLSDLCGTVMSTTD 80 (165)
T ss_dssp HHHHHHHHHBTTTBCHHH
T ss_pred HHHHHHHHHHHCCCCHHH
Confidence 999999999887665543
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=34.48 E-value=4.4e+02 Score=27.85 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhhcCCcc--cccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHH
Q psy8243 256 KEVKRTALLEMVEYLTAQDVH--ISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFL 333 (624)
Q Consensus 256 KeiKr~tL~ELvdyv~eeDe~--~~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~L 333 (624)
.-|+.-.+--||+++..+|.+ -.+.+|- +..+. + -++...+..++..-|-.|+.++.|+|+.-|...
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~a--------L~nia-s--~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A 163 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWA--------LTNIA-S--GTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHH--------HHHHH-T--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHH--------HHHHh-c--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 334445566788888655433 2466663 11111 1 123334444555678889999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHH-HHHHHHHhhhccCCccc----HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccc
Q psy8243 334 KTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNG----IAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKV 408 (624)
Q Consensus 334 ktiLhrIY~Kf~~lR~fIRk~-I~nif~~FIye~e~hnG----IaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~ 408 (624)
-..|..|-+....+|..+.+. .-..+...+........ ...+...+..+..|-..........-....|..|...
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~ 243 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 243 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc
Confidence 999999987777777776543 33444555543222221 2233444555555443322323333334556666555
Q ss_pred cc
Q psy8243 409 KS 410 (624)
Q Consensus 409 k~ 410 (624)
..
T Consensus 244 ~~ 245 (510)
T 3ul1_B 244 ND 245 (510)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=34.02 E-value=2.8e+02 Score=25.45 Aligned_cols=180 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHH
Q psy8243 315 VLQLLDLFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDE 393 (624)
Q Consensus 315 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeE 393 (624)
...++.++.|+|+..|......|.++..+... .+.++...+-..+.+++.... ..-....+.+++.+..|. ++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-----~~ 87 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG-----NE 87 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC-----HH
Confidence 34566677899999998887877665554322 333333444556677665433 333445666777766542 23
Q ss_pred HHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhCCCChH-----HHHHHHhccCCCCCCcccccccccchHHH
Q psy8243 394 HKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTE-----PVVKCLLKFWPKTHSPKESVVYSQVMFLN 463 (624)
Q Consensus 394 hk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~-----~vi~~LLk~WP~tns~KEs~~~~~VlFLn 463 (624)
.+..+ ...|+.|.+...- .-...-..++..+...++.-.. .++..|++.-- ++..+ +. ..-+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~--v~--~~a~~ 160 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQ--IL--QEALW 160 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHH--HH--HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh--CCCHH--HH--HHHHH
Confidence 33332 3466777766432 1223333333333322221101 12222322221 11111 00 11111
Q ss_pred HHHHHHhccChHHHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 464 ELEEILDVIEPAEFQKVM-VPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 464 ELeeILe~~~p~~f~~v~-~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
-|..+.. -+++....+. ..+...|...+.+++..|.+.|+..+.
T Consensus 161 ~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 161 ALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205 (252)
T ss_dssp HHHHHTT-SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHc-CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 2222221 1222222221 335667777888888888888887654
No 44
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=33.64 E-value=5.8e+02 Score=29.04 Aligned_cols=117 Identities=11% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhccccc-ccccchhhHHHHHHHHH---hhCCCChHHHHHHHhc
Q psy8243 367 EHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVK-SLSVYHPQLAYCVVQFL---EKDPSLTEPVVKCLLK 442 (624)
Q Consensus 367 e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k-~l~~Y~~qL~~cv~qFl---eKDpsLt~~vi~~LLk 442 (624)
....-..-.|-.+|+|..|.....++ +..-+.. ++|-...+ .-..-......++.+|. ..++.....++.+|++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~-~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKR-QIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------C-HHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhH-HHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445666788899998886543222 2222333 33433311 11112344455555543 4678889999988887
Q ss_pred cCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCC
Q psy8243 443 FWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSS 495 (624)
Q Consensus 443 ~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~ 495 (624)
.. + +. |. ..--.-+..+++.+ ...+.....++...+..++++.
T Consensus 554 ~l---~--~~--v~--~~A~~al~~l~~~~-~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 554 GL---N--SS--MS--AQATLGLKELCRDC-QLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HH---H--SS--CH--HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHST
T ss_pred Hh---C--hH--HH--HHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHcCC
Confidence 66 1 22 00 22222333444444 3456677777888887777773
No 45
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=33.37 E-value=4.3e+02 Score=27.47 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=92.4
Q ss_pred cCCHHHHHHHhhhcCCCC-HHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHhhhccCCcccHHHHHHHHHHHHhcC
Q psy8243 309 YIDQKFVLQLLDLFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 386 (624)
Q Consensus 309 ~Id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~lR~fIRk-~I~nif~~FIye~e~hnGIaELLeILgSIInGF 386 (624)
.+....+..|+.++.++| +.-|......|..|-..-...+..+.. ..-..|.+.+... ...-....+..|+.|..+
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~- 190 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGD- 190 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHT-
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC-
Confidence 344456778899999887 888888888888887754555554443 3445566666442 222334456677777643
Q ss_pred CCCChHHHHHHH-----HHHhhhcccccccccchhhHHHHHHHHHhhCCCChH-------HHHHHHhccCCCCCCccccc
Q psy8243 387 ALPLKDEHKFFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTE-------PVVKCLLKFWPKTHSPKESV 454 (624)
Q Consensus 387 a~PLKeEhk~Fl-----~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~-------~vi~~LLk~WP~tns~KEs~ 454 (624)
.++.+..+ ...|+.+.....-.........++..++...|.... +.+-.+++. ...+
T Consensus 191 ----~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~-- 259 (528)
T 4b8j_A 191 ----SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-----NDEE-- 259 (528)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----CCHH--
T ss_pred ----ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----CCHH--
Confidence 12223332 234555553222222344556666666655443322 222223321 1111
Q ss_pred ccccchHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHhh
Q psy8243 455 VYSQVMFLNELEEILDVIEPAEFQKVMV-PLFHQIAKCVSSSHFQVAERALYYW 507 (624)
Q Consensus 455 ~~~~VlFLnELeeILe~~~p~~f~~v~~-pLFk~La~Ci~S~hfqVAErAL~~w 507 (624)
+. ..-+.-|..+... +++....+.. .+...|..++.+++..|.+.|+..+
T Consensus 260 v~--~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 260 VL--TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp HH--HHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 00 1112222222211 2222222221 3556677777777777777777654
No 46
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.53 E-value=80 Score=37.27 Aligned_cols=194 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHhhhcCCC--CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH----HHHHHhhhccCCcccHHHHHHHHHHHHhcCCC
Q psy8243 315 VLQLLDLFDSE--DPRERDFLKTTLHRIYGKFLGLRAYIRKQIN----NIFYRFIYETEHHNGIAELLEILGSIINGFAL 388 (624)
Q Consensus 315 i~~Ll~lfdSe--DpRERd~LktiLhrIY~Kf~~lR~fIRk~I~----nif~~FIye~e~hnGIaELLeILgSIInGFa~ 388 (624)
|.+.+...-++ |+.+|......|..+=..=-.......-..+ +.-.+|. .+.++...|+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~f-----------a~~~L~~~I~---- 72 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLI-----------CLQTLSEKVR---- 72 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHH-----------HHHHHHHHHH----
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHH-----------HHHHHHHHHH----
Q ss_pred CChHH----HHHHHHHHhhhcccc----cccccchhhHHHHHHHHHhhC-CCChHHHHHHHhccCCCCCC-ccccccccc
Q psy8243 389 PLKDE----HKFFLLKVLLPLHKV----KSLSVYHPQLAYCVVQFLEKD-PSLTEPVVKCLLKFWPKTHS-PKESVVYSQ 458 (624)
Q Consensus 389 PLKeE----hk~Fl~~VLLPLHk~----k~l~~Y~~qL~~cv~qFleKD-psLt~~vi~~LLk~WP~tns-~KEs~~~~~ 458 (624)
.+.++ .+..+++.|+.+... ..-...-.+|+.+++.++..+ |.-=..++..|+..|-..+. .--
T Consensus 73 ~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~------ 146 (980)
T 3ibv_A 73 EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFS------ 146 (980)
T ss_dssp HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHH------
T ss_pred hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHH------
Q ss_pred chHHHHHH----------------------HHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHh---hcchhhh
Q psy8243 459 VMFLNELE----------------------EILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYY---WNNEYFM 513 (624)
Q Consensus 459 VlFLnELe----------------------eILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~---w~Ne~~l 513 (624)
..||.-+. ++-+.+....+..+....+..+..|..+.+..+++.+|.. |-+---.
T Consensus 147 ~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~ 226 (980)
T 3ibv_A 147 NFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI 226 (980)
T ss_dssp HHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH
Q ss_pred hhhhcccccccccchHHH
Q psy8243 514 NLITDNATVIVPIMFPAL 531 (624)
Q Consensus 514 ~li~~n~~~I~PiI~paL 531 (624)
+++.. ..+++.++..|
T Consensus 227 ~~i~~--~~ll~~l~~~L 242 (980)
T 3ibv_A 227 NLIVN--EPCMNLLYSFL 242 (980)
T ss_dssp HHHHC--HHHHHHHHHHT
T ss_pred Hhhhc--chHHHHHHHHc
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=30.55 E-value=2.2e+02 Score=31.55 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=35.0
Q ss_pred HHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHhhc
Q psy8243 435 PVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVS--SSHFQVAERALYYWN 508 (624)
Q Consensus 435 ~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~--S~hfqVAErAL~~w~ 508 (624)
.+++.+.+.++..++.-+ ...|.-+..+.-.. |+ +...+-..+..|.. |.+..|=+||..+|.
T Consensus 521 ~~l~~l~~~~~~~~~~v~------~~~Lta~~Kl~~~~-p~----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 521 IQFNLLHSKFHLCSVPTR------ALLLSTYIKFVNLF-PE----VKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHHHHHHHHHTTSCHHHH------HHHHHHHHHHHHHC-GG----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHH------HHHHHHHHHHHHHC-hH----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 455555555554433333 44444444443322 22 22233444555666 999999999999986
No 48
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=30.22 E-value=6.7e+02 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh
Q psy8243 313 KFVLQLLDLFDSEDPRERDFLKTTLHRIYGKF 344 (624)
Q Consensus 313 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 344 (624)
.++..|+.++.+.|+..+.....+|+.|.+++
T Consensus 123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 37788888888888887777777888887765
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=26.83 E-value=5.4e+02 Score=26.54 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=83.4
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHH
Q psy8243 319 LDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFL 398 (624)
Q Consensus 319 l~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl 398 (624)
..+..+++++-|.....+|..+|.++.. .++..+-..+.+...+. ...--...++.+|.+...+. .+.+...+
T Consensus 132 ~~l~~~~~~~~R~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~---~~~~~~~l 204 (588)
T 1b3u_A 132 KRLAGGDWFTSRTSACGLFSVCYPRVSS---AVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLE---LDNVKSEI 204 (588)
T ss_dssp HHHHTCSSHHHHHHHGGGHHHHTTTSCH---HHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSC---HHHHHHTH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---HHhHHHHH
Confidence 3445678888888888888888876542 34555555555544332 22222346677777776432 12222223
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHhhCCC-----ChHHHHHHHhc--cCCCCCCcccccccccchHHHHHHHHHhc
Q psy8243 399 LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPS-----LTEPVVKCLLK--FWPKTHSPKESVVYSQVMFLNELEEILDV 471 (624)
Q Consensus 399 ~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDps-----Lt~~vi~~LLk--~WP~tns~KEs~~~~~VlFLnELeeILe~ 471 (624)
...++.+.+.+.- .....-..++..+.+.-+. ...+.+..+++ .|. ++ ..-..-+..+...
T Consensus 205 ~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~--------vR---~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 205 IPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR--------VR---YMVADKFTELQKA 272 (588)
T ss_dssp HHHHHHHHTCSCH-HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHH--------HH---HHHHHTHHHHHHH
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHH--------HH---HHHHHHHHHHHHH
Confidence 3444444443321 1122234444545443321 11222223331 111 11 1233344555555
Q ss_pred cChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhc
Q psy8243 472 IEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWN 508 (624)
Q Consensus 472 ~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~ 508 (624)
++++.+. ..++..+.+.+.+++..|-+.|...+.
T Consensus 273 ~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 273 VGPEITK---TDLVPAFQNLMKDCEAEVRAAASHKVK 306 (588)
T ss_dssp HCHHHHH---HTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hCcccch---hHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5555432 345556666678888888887776543
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=25.52 E-value=1.8e+02 Score=33.86 Aligned_cols=177 Identities=13% Similarity=0.122 Sum_probs=84.4
Q ss_pred CHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHh-cCCCC
Q psy8243 311 DQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIIN-GFALP 389 (624)
Q Consensus 311 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~e~hnGIaELLeILgSIIn-GFa~P 389 (624)
|..-+.+++..+.++|..+|......|..+... .+.-.. ...++.+=-...-++.| +-+|...|+ .+ ..
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p~~~~~----l~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W-~~ 83 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQK----ADQILQFSTNPQSKFIA----LSILDKLITRKW-KL 83 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-TTGGGG----HHHHHHHCSCHHHHHHH----HHHHHHHHHHTG-GG
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-chHHHH----HHHHHhhCCCHHHHHHH----HHHHHHHHHhhC-cc
Confidence 334466677667777777777777777665332 111000 01111100000001111 122222332 33 24
Q ss_pred ChHHHHHHHHHHhhhcccccc--------cccchhhHHHHHHHHHhh-----CCCChHHHHHHHhccCCCCCC-cccccc
Q psy8243 390 LKDEHKFFLLKVLLPLHKVKS--------LSVYHPQLAYCVVQFLEK-----DPSLTEPVVKCLLKFWPKTHS-PKESVV 455 (624)
Q Consensus 390 LKeEhk~Fl~~VLLPLHk~k~--------l~~Y~~qL~~cv~qFleK-----DpsLt~~vi~~LLk~WP~tns-~KEs~~ 455 (624)
+.++.+..++..|+.+..... -.....+++.|+..+... .|++...++.. |- ++. .++
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~----~~-~~~~~~~--- 155 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGS----SS-SSVNVCE--- 155 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHH----HT-TCHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH----Hc-cChHHHH---
Confidence 567888888888888865432 123467788888776654 34444444433 21 111 122
Q ss_pred cccchHHHHHHHHHhccCh------------HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHh
Q psy8243 456 YSQVMFLNELEEILDVIEP------------AEFQKVMVPLFHQIAKCVSS-SHFQVAERALYY 506 (624)
Q Consensus 456 ~~~VlFLnELeeILe~~~p------------~~f~~v~~pLFk~La~Ci~S-~hfqVAErAL~~ 506 (624)
....+|.-+-|.+..... +.+......+|..+..++.+ .+..+...||..
T Consensus 156 -~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 156 -NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp -HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 012233333322211111 33555566677777777754 455666666654
No 51
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.04 E-value=8.3e+02 Score=27.73 Aligned_cols=191 Identities=5% Similarity=0.006 Sum_probs=91.1
Q ss_pred ccCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHhhhh--hhhHHHHHH---HHHHHHHhhhccC----CcccHHHHH
Q psy8243 308 KYIDQKFVLQLLDLFDS--EDPRERDFLKTTLHRIYGKFL--GLRAYIRKQ---INNIFYRFIYETE----HHNGIAELL 376 (624)
Q Consensus 308 ~~Id~~Fi~~Ll~lfdS--eDpRERd~LktiLhrIY~Kf~--~lR~fIRk~---I~nif~~FIye~e----~hnGIaELL 376 (624)
.|+++ ++..|..++++ -+.++|..+.+.+-.|..... ..-.++.+- +...+.+...... .-.-+.+.|
T Consensus 580 p~~~~-ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l 658 (971)
T 2x1g_F 580 PYADP-LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRL 658 (971)
T ss_dssp HHHHH-HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 44443 67777788887 468899998888888876542 122233222 2222222222211 113456777
Q ss_pred HHHHHHHhcCCCCChHH------------HHHHHHHHhhhccccc-ccccchhhHHHHHHH----HHhhCCCChHHHHHH
Q psy8243 377 EILGSIINGFALPLKDE------------HKFFLLKVLLPLHKVK-SLSVYHPQLAYCVVQ----FLEKDPSLTEPVVKC 439 (624)
Q Consensus 377 eILgSIInGFa~PLKeE------------hk~Fl~~VLLPLHk~k-~l~~Y~~qL~~cv~q----FleKDpsLt~~vi~~ 439 (624)
+.++.++.+......+. ...-+..++.-+.... .-.........++.. +-+.-..+...++.+
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 88888887654322110 0111122222222110 011112222222222 111122345677777
Q ss_pred HhccCCCCCCcccccccccchHHHHHHHHHhccChH-H----HHHHHHHHHHHHHHHhCC-------CcHHHHHHHHHhh
Q psy8243 440 LLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPA-E----FQKVMVPLFHQIAKCVSS-------SHFQVAERALYYW 507 (624)
Q Consensus 440 LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~-~----f~~v~~pLFk~La~Ci~S-------~hfqVAErAL~~w 507 (624)
|+...-. ..+ +.||.-+..++.....+ + +..+..+++..+-..+++ .+-.|++..+.+.
T Consensus 739 l~~~~~~---~~~------~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 739 IVASFQT---RCC------APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHCC-----CC------HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHhc---CCc------hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 7765532 234 78999999999877653 2 333333333333333333 3667777777665
Q ss_pred c
Q psy8243 508 N 508 (624)
Q Consensus 508 ~ 508 (624)
.
T Consensus 810 ~ 810 (971)
T 2x1g_F 810 T 810 (971)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=23.78 E-value=71 Score=29.19 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHhhCCCChHHHHHHHhccCCCCCCcccccccccchHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHH
Q psy8243 415 HPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEP---AEFQKVMVPLFHQIAKC 491 (624)
Q Consensus 415 ~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p---~~f~~v~~pLFk~La~C 491 (624)
.++...-++.++..+..-+..++..+.+|--++.+.+. +.+|.-+..|+..+.. ..|.+.+.++|...-++
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~K------L~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~ 96 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQK------LYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLL 96 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhH------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHh
Confidence 34444455666666666677777666666666777788 9999999999976653 46777888888888777
Q ss_pred hCCCcHHHHHHHHHhhcch
Q psy8243 492 VSSSHFQVAERALYYWNNE 510 (624)
Q Consensus 492 i~S~hfqVAErAL~~w~Ne 510 (624)
+....-+-..|-+.+|...
T Consensus 97 ~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 97 VDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp SCHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHhCc
Confidence 7666666777888889855
No 53
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=22.43 E-value=78 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHH
Q psy8243 377 EILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 424 (624)
Q Consensus 377 eILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~q 424 (624)
+++.|+|+. .-|.++||..+...|=-.-..+.+..|||-+..++..
T Consensus 5 sViRSvikS--S~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKS--SRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHH--SCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 466778876 3578999999888877778888999999888777654
No 54
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=21.79 E-value=78 Score=24.99 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhh
Q psy8243 136 VQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLT 174 (624)
Q Consensus 136 ~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~ 174 (624)
++-|||-|---|- +| ++|+++-|+=.+-++||-|++=
T Consensus 25 lkairqlcgaeds-sd-ssdmqeveiwtnrikeledwlw 61 (67)
T 2nr5_A 25 LKAIRQLCGAEDS-SD-SSDMQEVEIWTNRIKELEDWLW 61 (67)
T ss_dssp HHHHHHTTTTTCC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccC-Cc-chhhHHHHHHHHHHHHHHHHhh
Confidence 4567888888886 45 7899999999999999999873
No 55
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=20.55 E-value=1.1e+03 Score=27.84 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhh-hcccccccccchhhHHHHHHHHHhhCC--C--ChH--------HHH
Q psy8243 371 GIAELLEILGSIINGFALPLKDEHKFFLLKVLL-PLHKVKSLSVYHPQLAYCVVQFLEKDP--S--LTE--------PVV 437 (624)
Q Consensus 371 GIaELLeILgSIInGFa~PLKeEhk~Fl~~VLL-PLHk~k~l~~Y~~qL~~cv~qFleKDp--s--Lt~--------~vi 437 (624)
-+.-.|+++++.++ -+|+..-...-+...++ .+... ..+...=..|+..++.++- . -.. .++
T Consensus 211 l~~~~L~~l~s~l~--WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l 285 (1023)
T 4hat_C 211 LIVATLESLLRYLH--WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTL 285 (1023)
T ss_dssp HHHHHHHHHHHHTT--TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH
Confidence 34558899999887 24554311111222333 22222 2356666889999988541 2 112 222
Q ss_pred HHH-hccCCCCCCcccccccc-----cchHHHHHHHHH--------hccC-hHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q psy8243 438 KCL-LKFWPKTHSPKESVVYS-----QVMFLNELEEIL--------DVIE-PAEFQKVMVPLFHQIAKCVSSSHFQVAER 502 (624)
Q Consensus 438 ~~L-Lk~WP~tns~KEs~~~~-----~VlFLnELeeIL--------e~~~-p~~f~~v~~pLFk~La~Ci~S~hfqVAEr 502 (624)
..+ -..-|..-.-++ .|. -.-|+.-+..++ ..+. ..++..+...++..+-.|..-+...|++-
T Consensus 286 ~~l~~~i~p~~~~l~~--~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~ 363 (1023)
T 4hat_C 286 QQIATSVMPVTADLKA--TYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKT 363 (1023)
T ss_dssp HHHHHHTCCTTCCHHH--HHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHhCCCcchHHH--HHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 222 223354332222 000 022333333332 3332 23556666666777888877789999999
Q ss_pred HHHhhcc
Q psy8243 503 ALYYWNN 509 (624)
Q Consensus 503 AL~~w~N 509 (624)
++.||..
T Consensus 364 tl~FW~~ 370 (1023)
T 4hat_C 364 TLDYWHN 370 (1023)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999963
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.47 E-value=3.9e+02 Score=24.84 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q psy8243 314 FVLQLLDLFDSEDPRERDFLKTTLHRIYG 342 (624)
Q Consensus 314 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~ 342 (624)
++..|+..+....++-|+.....|..+..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 55666666766677777766666666544
Done!