RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8243
         (624 letters)



>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
           family).  Protein phosphatase 2A (PP2A) is a major
           intracellular protein phosphatase that regulates
           multiple aspects of cell growth and metabolism. The
           ability of this widely distributed heterotrimeric enzyme
           to act on a diverse array of substrates is largely
           controlled by the nature of its regulatory B subunit.
           There are multiple families of B subunits (See also
           pfam01240), this family is called the B56 family.
          Length = 405

 Score =  449 bits (1156), Expect = e-154
 Identities = 205/360 (56%), Positives = 252/360 (70%), Gaps = 47/360 (13%)

Query: 220 FADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVH--I 277
             D  S    +LF++K++QCCV+ DF  DP S+LK KE+KR  L E+V+Y++  D+   +
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDF-SDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKL 59

Query: 278 SEAIYPEAVNMV------------------------------------RLYLVFLESPDF 301
           +E +Y E   M+                                     + L F+ESP F
Sbjct: 60  TEDLYDEIFKMIAVNIFRPLPPIPNPSLDPDDDEPFLEPSWPHLSLVYEILLRFIESPPF 119

Query: 302 QPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 361
            P   KKYID  F+ +LLDLFDS DPRERD LKT LHRIYGKF GLR +IRK IN+I YR
Sbjct: 120 DPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSILYR 177

Query: 362 FIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYC 421
           FIYETE  NG+AELLEILGSIINGFALPLK+EHK FLLKVLLPLHK K LS+YH QL+YC
Sbjct: 178 FIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLSYC 237

Query: 422 VVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVM 481
           VVQF+EKDPSL E V++ LLK WP T+S K      +V+FL+ELEEIL+ I P EFQK+M
Sbjct: 238 VVQFIEKDPSLAEEVIRGLLKHWPVTNSSK------EVLFLDELEEILEKIPPEEFQKIM 291

Query: 482 VPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 541
           VPLF  +A+C+SS HFQVAERAL  WNNEYF+NLI+DN+ +I+PI+FPALYRN+K HWN+
Sbjct: 292 VPLFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQ 351



 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 123 FADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVH--I 180
             D  S    +LF++K++QCCV+ DF  DP S+LK KE+KR  L E+V+Y++  D+   +
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDF-SDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKL 59

Query: 181 SEAIYPEAVNMV 192
           +E +Y E   M+
Sbjct: 60  TEDLYDEIFKMI 71


>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
           Provisional.
          Length = 170

 Score = 86.7 bits (215), Expect = 8e-20
 Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 20/102 (19%)

Query: 499 VAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWN-----------KEKERMR 547
           VAERAL+ WNN++ +NLI  N  VI+PI+FPAL +N++ HWN           K    M 
Sbjct: 68  VAERALFLWNNDHIVNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEM- 126

Query: 548 DRDL---TWINIGEKERMRD-----RDLTWSRVEALAMKNPH 581
           D +L         E E         R+ TW R+E  A     
Sbjct: 127 DPELFEECLRKFEEDEAKAKEVEEKREATWKRLEEAAAAKAI 168


>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
          Length = 514

 Score = 35.2 bits (82), Expect = 0.093
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23  HSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSI 65
            + L+ LADA  A P AP  ++ A P  P T   T  AI Q I
Sbjct: 305 AAALEALADALGAKPAAPPLAAPARPPLP-TGALTPEAIAQVI 346


>gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the
           oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
           6-hydroxyhexanoate dehydrogenase (HHD). The
           6-hydroxyhexanoate dehydrogenase catalyzes the oxidation
           of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria
           can grow on cyclic ketones, cyclohexylamine, and
           alcohols as sole carbon source. Cyclohexylamine is an
           insecticide and antiseptic in various industries and is
           considered a possible environmental pollutant. The
           degradation of these chemical compounds are through the
           cyclohexanol and cyclohexanone biological oxidation
           pathway. The intermediates of this pathway include
           cyclohexanol, cyclohexanone, e-caprolactone,
           6-hydroxyhexanoate, 6-oxohexanoate and adipate. The
           6-hydroxyhexanoate dehydrogenase catalyzes the oxidation
           of 6-hydroxyhexanoate to 6-oxohexanoate.
          Length = 386

 Score = 33.4 bits (77), Expect = 0.31
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 17/100 (17%)

Query: 23  HSGLDLLADAT---TATPTAPLPSSAAPPEFPATNPFT----LAAIKQSIIDFNLYSDIS 75
            SG D L  A    TA    P P   A   +   N  T      AI+  +I  +L   + 
Sbjct: 181 DSGADALTHAIESFTAMDRNPFPDGDADHVYSGKNALTDLFAREAIR--LIGRSLPRAVR 238

Query: 76  DMSSTEGESDDS-ALMFAGM-------QLPSLLAYPISLL 107
           D    E  +D   A + AG+            L YP+  L
Sbjct: 239 DGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGAL 278


>gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase.  This clade of
           genes encoding iron-containing alcohol dehydrogenase
           (pfam00465) proteins is generally found in apparent
           operons for the catabolism of rhamnose or fucose.
           Catabolism of both of these monosaccharides results in
           lactaldehyde which is reduced by this enzyme to 1,2
           propanediol. This protein is alternatively known by the
           name 1,2 propanediol oxidoreductase. This enzyme is
           active under anaerobic conditions in E. coli while being
           inactivated by reactive oxygen species under aerobic
           conditions. Under aerobic conditions the lactaldehyde
           product of rhamnose and fucose catabolism is believed to
           be oxidized to lactate by a separate enzyme,
           lactaldehyde dehydrogenase [Energy metabolism, Sugars].
          Length = 379

 Score = 30.9 bits (70), Expect = 1.9
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 10  PRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFN 69
              M  +PKS +  +G+D L  A     T           +  T+   L AI+  II   
Sbjct: 177 AEMMYSMPKSLTAATGMDALTHAIEGYIT--------KGAWELTDMLHLKAIE--IIARW 226

Query: 70  LYSDISDMSSTEGESDDS-ALMFAGMQLPSL-------LAYPISLLYCSLP 112
           L S +      E     +     AGM   ++       +A+P+   Y + P
Sbjct: 227 LRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY-NTP 276


>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
           Provisional.
          Length = 2722

 Score = 30.2 bits (68), Expect = 5.1
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 264 LEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFD 323
           L+ +E        I     P  V    L   + ES       AK Y   KF L++L + D
Sbjct: 315 LKKIEKGKEYIKRIQNNNIPPQVKKDELKKKYFES-------AKHYASFKFSLEMLSMLD 367

Query: 324 SEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 379
           S   ++   L    ++++G        ++++I  +     + +++ N I+     L
Sbjct: 368 SLLIKKEKILNNLFNKLFG-------DLKEKIETLLDSEYFISKYTNIISLSEHTL 416


>gnl|CDD|132446 TIGR03405, Phn_Fe-ADH, phosphonate metabolism-associated
           iron-containing alcohol dehydrogenase.  This small clade
           of iron-containing alcohol dehydrogenases of the
           pfam00465 family is found in genomic contexts indicating
           a role in the metabolism of phosphonates. In Delftia
           acidovorans SPH-1, the gene ZP_01580650.1 is adjacent to
           and running in the same direction as ZP_01580649.1
           encoding the enzyme phosphonatase (PhnX, TIGR01422).
           Upstream are also found genes encoding components of a
           phosphonate ABC transport complex. In Ralstonia eutropha
           H16 and Verminephrobacter eiseniae EF01-2 the
           dehydrogenase is followed by a homolog of the PhnB gene,
           a putative phosphonate-specific MFS-type transporter. In
           Azoarcus BH72 the gene is preceded by
           Phosphoenolpyruvate phosphomutase (aepX) and a putative
           phosphonopyruvate decarboxylase (aepY), two genes
           involved in the biosynthesis of phosphonoacetaldehyde
           (Pald). Ususally these two are accompanied by a specific
           transaminase, AepZ, which converts Pald to
           2-aminoethylphosphonate (2-AEP).
           2-hydroxyethylphosphonate (2-HEP), the presumed product
           of the reaction of Pald with an alcohol dehydrogenase,
           is a biologically novel but reasonable analog of 2-AEP
           and may be a constituent of as-yet undescribed natural
           products. In the case of Azoarcus, downstream of the
           dehydrogenase is a CDP-glycerol:glycerophosphate
           transferase homolog that may indicate the existence of a
           pathway for 2-HEP-derived phosphonolipid biosynthesis.
          Length = 355

 Score = 28.7 bits (64), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 10  PRAMLGLPKSPSFHSGLDLLADA 32
              ML LP+  +  +GLD L+ A
Sbjct: 173 AALMLSLPREHTLSTGLDALSHA 195


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,486,498
Number of extensions: 3241136
Number of successful extensions: 2916
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2908
Number of HSP's successfully gapped: 25
Length of query: 624
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 521
Effective length of database: 6,369,140
Effective search space: 3318321940
Effective search space used: 3318321940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)