RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8243
(624 letters)
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE
subunit gamma isoform; heat repeat, signaling protein,
hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo
sapiens} SCOP: a.118.1.20
Length = 449
Score = 428 bits (1102), Expect = e-145
Identities = 274/419 (65%), Positives = 303/419 (72%), Gaps = 63/419 (15%)
Query: 219 LFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHIS 278
D +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T I+
Sbjct: 29 HIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVIT 88
Query: 279 EAIYPEAVNMV---------------------------------------RLYLVFLESP 299
E IYPE V+M +L FLESP
Sbjct: 89 EPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 300 DFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 359
DFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 360 YRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLA 419
YRFIYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLA
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 420 YCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQK 479
YCVVQFLEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP+EF K
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVK 322
Query: 480 VMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHW 539
+M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHW
Sbjct: 323 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHW 382
Query: 540 NKEKERMRDRDLTWIN------------------IGEKERMRDRDLTWSRVEALAMKNP 580
NK + L + EK +M++R+ W ++E LA NP
Sbjct: 383 NKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANP 441
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 414 bits (1065), Expect = e-141
Identities = 267/416 (64%), Positives = 296/416 (71%), Gaps = 64/416 (15%)
Query: 122 LFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHIS 181
D +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T I+
Sbjct: 41 HIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVIT 100
Query: 182 EAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCV 241
E IYPE V+M + + ++P SNP + +
Sbjct: 101 EPIYPEVVHMFAVNMFR--------TLPPSSNPTGAEFDPE------------------- 133
Query: 242 LFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDF 301
+P E W P + +L FLESPDF
Sbjct: 134 ----EDEPTLEAAW---------------------------PHLQLVYEFFLRFLESPDF 162
Query: 302 QPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 361
QPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR
Sbjct: 163 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 222
Query: 362 FIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYC 421
FIYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLAYC
Sbjct: 223 FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYC 282
Query: 422 VVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVM 481
VVQFLEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP+EF K+M
Sbjct: 283 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIM 336
Query: 482 VPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKT 537
PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKT
Sbjct: 337 EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; PP2A, shugoshin, nucleus, phosphoprotein,
hydrolase, iron, M metal-binding, methylation, protein
phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo
sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Length = 403
Score = 413 bits (1062), Expect = e-140
Identities = 270/408 (66%), Positives = 299/408 (73%), Gaps = 63/408 (15%)
Query: 225 SEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPE 284
+++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T I+E IYPE
Sbjct: 2 PADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPE 61
Query: 285 AVNMV---------------------------------------RLYLVFLESPDFQPNI 305
V+M +L FLESPDFQPNI
Sbjct: 62 VVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 121
Query: 306 AKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 365
AKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE
Sbjct: 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 181
Query: 366 TEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQF 425
TEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLAYCVVQF
Sbjct: 182 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQF 241
Query: 426 LEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLF 485
LEKD +LTEPVV LLK+WPKTHSPKE VMFLNELEEILDVIEP+EF K+M PLF
Sbjct: 242 LEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIMEPLF 295
Query: 486 HQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKER 545
Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA I+PIMFP+LYRNSKTHWNK
Sbjct: 296 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 355
Query: 546 MRDRDLTWIN------------------IGEKERMRDRDLTWSRVEAL 575
+ L + EK +M++R+ W ++E L
Sbjct: 356 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.2 bits (192), Expect = 5e-15
Identities = 86/544 (15%), Positives = 166/544 (30%), Gaps = 171/544 (31%)
Query: 103 PISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQD--PLS--EL-- 156
P++L + SL + + + F AS + +++ F + + + F D P + EL
Sbjct: 8 PLTLSHGSLE-HVLLVPTASFFIAS-QLQEQ-FNKILPE--PTEGFAADDEPTTPAELVG 62
Query: 157 -----------KWKEVKRTALLEMV------EYLTAQDVH--------ISEAIYPEAVNM 191
K + +L + YL D+H ++ + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 192 VRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDF-----V 246
++ Y+ A ++ P +S LF + +L F
Sbjct: 123 IKNYITARIMA----KRPF-DKKSNSALFRAVGEGNA-QLVAI----------FGGQGNT 166
Query: 247 QDPLSELK-----WKEVKRTALLEMVEYLT--AQDVHISEAIYPEAVNMVRLYLVFLESP 299
D EL+ + + + E L+ + +E ++ + +N++ +LE+P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE----WLENP 222
Query: 300 DFQPNIAKKYIDQK-------FVLQL---------LDLFDSEDPRE-RDFLKTTLHRIYG 342
P+ Y+ V+QL L P E R +LK G
Sbjct: 223 SNTPDKD--YLLSIPISCPLIGVIQLAHYVVTAKLLGF----TPGELRSYLKGATGHSQG 276
Query: 343 --------------KFLGLRAYIRKQINNIFY---RFIYETEHHNGIAELLEILGSIING 385
F +RK I +F+ R + + +LE S+ N
Sbjct: 277 LVTAVAIAETDSWESFFVS---VRKAITVLFFIGVRCYEAYPNTSLPPSILED--SLENN 331
Query: 386 FALP-----LKDEHKFFLLKVL------LPLHKVKSLSVY----------HPQLAYCVVQ 424
+P + + + + + LP K +S+ PQ Y +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 425 FLEK-------DPS---LTEPVVKCLLKFWPKT---HSPKESVVY---SQVMFLNELEEI 468
L K D S +E +K +F P HS + + +L +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH-----LLVPASDLINKDLVKN 446
Query: 469 LDVIEPAEFQKVMVPLFH--------QIAKCVSSSHFQVAERALYYWNNEYFMNLITDNA 520
+ Q +P++ ++ +S R W A
Sbjct: 447 NVSFNAKDIQ---IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-----ETTTQFKA 498
Query: 521 TVIV 524
T I+
Sbjct: 499 THIL 502
Score = 47.7 bits (113), Expect = 1e-05
Identities = 55/392 (14%), Positives = 105/392 (26%), Gaps = 151/392 (38%)
Query: 2 VYSEYVPGPRAML--------GLPKSPS-----FHSGLDL---LADATTATPTAPLPSSA 45
+Y Y ++ L ++ F GL++ L + PS+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----------PSNT 225
Query: 46 APPEFPATNPFTLAAIKQSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPIS 105
++ + P + I +I Y G L +Y
Sbjct: 226 PDKDYLLSIPISCPLI--GVIQLAHYV--------------VTAKLLGFTPGELRSYLKG 269
Query: 106 LLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCC-VLF-----------------D 147
S + + ++ A+ S E F +R+ VLF
Sbjct: 270 ATGHSQGLVT----AVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 148 FVQDPLSE--------LKWKEVKRTALLEMVEYL-----TAQDVHISEAIYPEAVNMVRL 194
++D L L + + + + V + V IS VN +
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS------LVNGAKN 376
Query: 195 YLVA-YPISILY-----------------CSIPIYSN----------PI----HSILFAD 222
+V+ P S LY IP +S P+ HS L
Sbjct: 377 LVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 223 ASSEHRDELFVQKIRQCCVLFDFVQDPLSELK-----------WKEVKRTALLEMVEYLT 271
AS +L + F+ +++ + + + +V+ +
Sbjct: 435 ASDLINKDLVKNNV-----SFN-----AKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 272 AQDVHISEAIYPEAVNMVRLYLVFLESPDFQP 303
V + +++ DF P
Sbjct: 485 RLPVK-----WETTTQFKATHIL-----DFGP 506
Score = 45.0 bits (106), Expect = 8e-05
Identities = 51/366 (13%), Positives = 97/366 (26%), Gaps = 115/366 (31%)
Query: 317 QLLDLF------DSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHN 370
QL + F +E D T + GKFLG ++ +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKFLG---------------YVSSLVEPS 75
Query: 371 GIAELLEILGSIINGFA---LPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE 427
+ + ++L + F L D H L LL + + Y + +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHA--LAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 428 KDPSLTEPVVKCLLKFWPKTHSPKESV-VYSQVMF---------LNELEEILDVIEPAEF 477
K P + L + + + + + F EL ++ +
Sbjct: 134 KRP-FDKKSNSALFR-----AVGEGNAQLVAI--FGGQGNTDDYFEELRDLYQT-----Y 180
Query: 478 QKVMVPLFHQIAKCVSSSHFQVAERALYY--------W--------NNEYFMNLITDNAT 521
++ L A+ +S + + W + +Y
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--------- 231
Query: 522 VIVPIMFP-------ALYRNSKTHWNKEKERMRDR---------DL----------TWIN 555
+ +PI P A Y + +R L +W +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 556 IGEKERMRDRDLTWSRVEALAMKNPHYKPSLCNSSSSSQEYLGGEGEEGDGS-------L 608
R L + V P+ S ++ L E EG S L
Sbjct: 292 FFVSVRKAITVLFFIGVRCY-----EAYPNTSLPPSILEDSL--ENNEGVPSPMLSISNL 344
Query: 609 DREKIE 614
+E+++
Sbjct: 345 TQEQVQ 350
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 75/504 (14%), Positives = 150/504 (29%), Gaps = 154/504 (30%)
Query: 63 QSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSIL 122
Q +DF ++ ++ S ++ L L LL Y I + S +S+ I L
Sbjct: 177 QCKMDFKIFW----LNLKNCNSPETVLE----MLQKLL-YQIDPNWTSRSDHSSNI--KL 225
Query: 123 FADASSEHRDELFVQKIRQCCVL-------------FDF------------VQDPLSELK 157
+ L K + C+L F+ V D LS
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 158 WKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHS 217
+ +L LT + +++ + ++ L P + + NP
Sbjct: 286 TTHI---SLDHHSMTLTPDE---VKSLLLKYLDCRPQDL---PREV--LTT----NPRRL 330
Query: 218 ILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEV---KRTALLEM-VEYLTA- 272
+ A++ + +D WK V K T ++E + L
Sbjct: 331 SIIAESIRDGLA------------TWDN---------WKHVNCDKLTTIIESSLNVLEPA 369
Query: 273 --QDVHISEAIYPEAVN--MVRLYLVFLESPDFQP-NIAKKYIDQ--------KFVLQLL 319
+ + +++P + + + L L++ + + K + + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 320 DLFDSEDPRERDFLKTTLHR-IYGKFLGLRAY-----IRKQINNIFYRFIYETEHHNGIA 373
++ + + + LHR I + + + I ++ FY I HH
Sbjct: 430 SIYLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNI 484
Query: 374 ELLEILGSIINGFALPLKDEHKFFLL-KVLLPLH----KVKSLSVYHPQLAYCVVQFLEK 428
E E + L V L K++ H A+ +
Sbjct: 485 EHPE-----------------RMTLFRMVFLDFRFLEQKIR-----HDSTAWNASGSIL- 521
Query: 429 DPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQI 488
+L + LKF+ K + Y + +N + + L IE
Sbjct: 522 -NTLQQ------LKFY-KPYICDNDPKYER--LVNAILDFLPKIEE-------------- 557
Query: 489 AKCVSSSHFQVAERALYYWNNEYF 512
+ S + + AL + F
Sbjct: 558 -NLICSKYTDLLRIALMAEDEAIF 580
Score = 55.2 bits (132), Expect = 6e-08
Identities = 55/323 (17%), Positives = 103/323 (31%), Gaps = 70/323 (21%)
Query: 25 GLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFN------LYSDISDMS 78
LL P E TNP L+ I +SI D + + ++
Sbjct: 303 VKSLLLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 79 STEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSN----PIQ--SILFADASSEHRD 132
+ S L L ++ L ++ P S+++ D
Sbjct: 357 TIIESS-----------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-V 404
Query: 133 ELFVQK-IRQCCVLFDFVQDPLS------ELKWKEVKRTAL-LEMVEYLTAQDVHISEAI 184
+ V K + V + +S ELK K AL +V++ S+ +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 185 YPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFD 244
P ++ Y ++ I + H + R LF R + F
Sbjct: 465 IPPYLDQ---YFYSH---IGH----------H---LKNIEHPERMTLF----RMVFLDFR 501
Query: 245 FVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPN 304
F++ + ++L ++ L +I + P+ +V L DF P
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAIL------DFLPK 554
Query: 305 IAKKYIDQKF--VLQLLDLFDSE 325
I + I K+ +L++ + + E
Sbjct: 555 IEENLICSKYTDLLRIALMAEDE 577
Score = 48.7 bits (115), Expect = 6e-06
Identities = 55/420 (13%), Positives = 117/420 (27%), Gaps = 134/420 (31%)
Query: 227 HRDELFVQKIRQCC--VLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDV-HISEAIYP 283
H + + + +L F + K+V+ L+ +++ HI +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIMS--K 58
Query: 284 EAVNMVRL------------YLVFLES---PDF------------QPN-IAKKYIDQKFV 315
+AV+ F+E ++ QP+ + + YI+Q+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 316 LQ-LLDLFDSED-PRERDF--LKTTLHR--------IYGKFLG----------LRAY--I 351
L +F + R + + L+ L I G LG +Y
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQ 177
Query: 352 RKQINNIFYRFIYETEHHNGIAELLEILGSII---------NGFALPLKDEHKFFLLKVL 402
K IF+ + + E+L+ L I + + L+ L+ L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 403 LPLHK-VKSL----SVYHPQL--AY---CVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKE 452
L L +V + + A+ C + + +T+ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--------------- 282
Query: 453 SVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYF 512
+ + + L+ + P E + L K + + L
Sbjct: 283 AATTTHI----SLDHHSMTLTPDE----VKSLL---LKYLDCRPQDLPREVL-------- 323
Query: 513 MNLITDNATVIVPI---MFPALYRNSKTHWN-------KEKERMRDRDLTWINIGEKERM 562
P + R+ W+ + + + L + E +M
Sbjct: 324 ---------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C
3f3p_C 3ewe_B
Length = 570
Score = 31.3 bits (70), Expect = 0.94
Identities = 50/329 (15%), Positives = 100/329 (30%), Gaps = 28/329 (8%)
Query: 243 FDFVQDPLSELKWKEVKRTALLEMVEYLTAQDV-HISEAIYPEAVNMVRLYLVFLESPDF 301
FDF+ D ++L + L + ++ + ++ P N ++ L F P
Sbjct: 16 FDFLDDGTAQLSNNKTDEEEQLYKRDPVSGAILVPMTVNDQPIEKNGDKMPLKFKLGPLS 75
Query: 302 QPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 361
N+A K+ L + + + +E + L IY R + I +
Sbjct: 76 YQNMAFITAKDKYKLYPVRIPRLDTSKEFSAYVSGLFEIYRDLGDDRVFNVPTIGVVNSN 135
Query: 362 FIYETEHH--NGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLA 419
F E + +L L I ++F+ L +SL+V +
Sbjct: 136 FAKEHNATVNLAMEAILNELEVFIGRVKDQDGRVNRFYEL--------EESLTVLNCLRT 187
Query: 420 YCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYS-QVMFLNELEEILDVIEPAEF- 477
+ + ++ LL W + Y QV + + V E F
Sbjct: 188 MYFILDGQDVEENRSEFIESLLN-WINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFW 246
Query: 478 ----QKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIM--FPAL 531
Q V+ L Q C+ S + ++D + ++ +P
Sbjct: 247 KLLNQLVLRGLLSQAIGCIERSDLLPYLSD----TCAVSFDAVSD----SIELLKQYPKD 298
Query: 532 YRNSKTHWNKEKERMRDRDLTWINIGEKE 560
++ W ++ + E
Sbjct: 299 SSSTFREWKNLVLKLSQAFGSSATDISGE 327
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.70A {Escherichia coli} PDB:
2dbi_A 2csg_A*
Length = 461
Score = 29.7 bits (66), Expect = 2.8
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 212 SNPIHSILFADASSEHRDELFVQKIRQ-CCVLFDFVQDPLSELKWKEVKRTALLEMVEYL 270
+ +AD + H ++I++ C + L W + M++YL
Sbjct: 98 DAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQ-------SMLDYL 150
Query: 271 TAQD 274
Sbjct: 151 DRNR 154
Score = 28.2 bits (62), Expect = 9.9
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 115 SNPIQSILFADASSEHRDELFVQKIRQ-CCVLFDFVQDPLSELKWKEVKRTALLEMVEYL 173
+ +AD + H ++I++ C + L W + M++YL
Sbjct: 98 DAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQ-------SMLDYL 150
Query: 174 TAQD 177
Sbjct: 151 DRNR 154
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 28.4 bits (64), Expect = 7.7
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 27 DLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIK 62
L +A P+ P+ N T I
Sbjct: 4 ALREEAKGLFEVIPMQ----APQLADNNTVTRDKID 35
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 213
Score = 28.1 bits (61), Expect = 8.4
Identities = 12/51 (23%), Positives = 15/51 (29%)
Query: 5 EYVPGPRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNP 55
E G LPKSPS + TP+ + F T
Sbjct: 17 EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFV 67
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 28.3 bits (63), Expect = 8.7
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 27 DLLADATTATPTA-PLPSSAAPPEFPATNPFTLAAIKQSI 65
+ + D + P + P+P + FP + + I+Q+
Sbjct: 280 NAMTDCSDVIPLSKPIPGNGPFSFFPPG--KSHSDIEQAC 317
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA
UTP-binding, transferase; 1.56A {Trypanosoma brucei}
PDB: 3hiy_A 3hj1_A*
Length = 384
Score = 28.2 bits (62), Expect = 9.2
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 21/78 (26%)
Query: 312 QKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNG 371
++F+ ++ + + P + ++K++ +I + +
Sbjct: 5 REFIRGMMAHYRASLPPPEHSVV-------------IHELQKRVLDIGMLAVNKAH---- 47
Query: 372 IAELLEILGSIINGFALP 389
+E+ GS ++GF P
Sbjct: 48 ----VELFGSHVSGFCTP 61
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 9.2
Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 8/35 (22%)
Query: 532 YRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRD 566
+ K K R +K + D
Sbjct: 124 NQRQSEQVEKNKINNRIA--------DKAFYQQPD 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,606,746
Number of extensions: 577235
Number of successful extensions: 1119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 29
Length of query: 624
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 525
Effective length of database: 3,937,614
Effective search space: 2067247350
Effective search space used: 2067247350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)