RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8243
         (624 letters)



>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase
           2A regulatory subunit B56-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 343

 Score =  423 bits (1088), Expect = e-145
 Identities = 252/347 (72%), Positives = 272/347 (78%), Gaps = 45/347 (12%)

Query: 222 DASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAI 281
           D     +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T     I+E I
Sbjct: 3   DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 62

Query: 282 YPEAVNMV---------------------------------------RLYLVFLESPDFQ 302
           YPE V+M                                          +L FLESPDFQ
Sbjct: 63  YPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 122

Query: 303 PNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 362
           PNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF
Sbjct: 123 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 182

Query: 363 IYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCV 422
           IYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLAYCV
Sbjct: 183 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 242

Query: 423 VQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMV 482
           VQFLEKD +LTEPVV  LLK+WPKTHSPKE      VMFLNELEEILDVIEP+EF K+M 
Sbjct: 243 VQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIME 296

Query: 483 PLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFP 529
           PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA  I+PIMFP
Sbjct: 297 PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.7 bits (66), Expect = 1.1
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 15/237 (6%)

Query: 260 RTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIA--KKYIDQKFVLQ 317
            TA   ++  L  ++    +     AV+ +   +    +                  +L+
Sbjct: 196 VTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLR 255

Query: 318 LL-DLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETE----HHNGI 372
           LL      EDP  R  L   L  I  K        + Q +N     ++E      HH+  
Sbjct: 256 LLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE 315

Query: 373 AELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSL 432
             LL    + +  F    +   ++  L+ +  L    S   +     +            
Sbjct: 316 PNLLVRACNQLGQFLQHRETNLRYLALESMCTL--ASSEFSHEAVKTHIETVINALKTER 373

Query: 433 TEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIA 489
              V +  +               +    + E+   L+  +    ++ +V     +A
Sbjct: 374 DVSVRQRAVDLLYAMCDRS-----NAQQIVAEMLSYLETADY-SIREEIVLKVAILA 424


>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 274

 Score = 28.0 bits (62), Expect = 3.6
 Identities = 16/113 (14%), Positives = 33/113 (29%)

Query: 164 TALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADA 223
           TA L +   +  Q  H    +  E    +  +        +YC           ++    
Sbjct: 132 TAPLRLQAEIAQQTPHGEYRLMQEGSTWILQFRHHEHWQSMYCFDLGVQQQSDHVMGNFW 191

Query: 224 SSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVH 276
           S+      F   +  C  L D  +  L+   +    +   +E V       ++
Sbjct: 192 SAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTRYHQGHAVEQVNVPDVPSLY 244


>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 22/242 (9%), Positives = 52/242 (21%), Gaps = 13/242 (5%)

Query: 340 IYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGS--------IINGFALPLK 391
                  +   I   + N+   + Y  E    I E   +           +         
Sbjct: 11  YLPGETAIWQRIEGTLKNVLGSYGYS-EIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 69

Query: 392 DEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPK 451
                  L+       V++   +          +        E   K   + + +     
Sbjct: 70  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG--- 126

Query: 452 ESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEY 511
              V+       + E I+          +   +  ++    S         AL  +  ++
Sbjct: 127 -CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQH 185

Query: 512 FMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSR 571
              L  D    +       L   +        +     D       E      + L  + 
Sbjct: 186 KEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAG 245

Query: 572 VE 573
           + 
Sbjct: 246 IA 247


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,349,265
Number of extensions: 111035
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 12
Length of query: 624
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 533
Effective length of database: 1,158,166
Effective search space: 617302478
Effective search space used: 617302478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)