BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8244
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W734|SMAD6_CHICK Mothers against decapentaplegic homolog 6 OS=Gallus gallus GN=SMAD6
PE=2 SV=1
Length = 431
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 31 HTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLL-------PNAHFLCCQLWRWPDV 83
+ L+KRLK+ L +L++A+ES G C+L+ L P H L +L+RWPD+
Sbjct: 111 YALLKRLKERSLHSLLQAVESRGGTPGGCVLVARGELRLGAARRPPPHLLLGKLFRWPDL 170
Query: 84 SEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRC 123
P ELK L C S+ +D P+ +CCNPYH+SR C
Sbjct: 171 QHPAELKALCECQSFGAAD-GPT-----VCCNPYHFSRLC 204
>sp|O43541|SMAD6_HUMAN Mothers against decapentaplegic homolog 6 OS=Homo sapiens GN=SMAD6
PE=1 SV=2
Length = 496
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 31 HTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLL------PNAHFLCCQLWRWPDVS 84
++L+KRLK+ L+TL+EA+ES G C+L+P L L +L+RWPD+
Sbjct: 177 YSLLKRLKERSLDTLLEAVESRGGVPGGCVLVPRADLRLGGQPAPPQLLLGRLFRWPDLQ 236
Query: 85 EPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRC 123
ELK L C S+ + P+ +CCNPYH+SR C
Sbjct: 237 HAVELKPLCGCHSFAAAADGPT-----VCCNPYHFSRLC 270
>sp|O35182|SMAD6_MOUSE Mothers against decapentaplegic homolog 6 OS=Mus musculus GN=Smad6
PE=1 SV=1
Length = 495
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 31 HTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLL------PNAHFLCCQLWRWPDVS 84
++L+KRLK+ L+TL+EA+ES G C+L+P L L +L+RWPD+
Sbjct: 178 YSLLKRLKERSLDTLLEAVESRGGVPGGCVLVPRADLRLGGQPAPPQLLLGRLFRWPDLQ 237
Query: 85 EPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRC 123
ELK L C S+ + P+ +CCNPYH+SR C
Sbjct: 238 HAVELKPLCGCHSFTAAADGPT-----VCCNPYHFSRLC 271
>sp|O15105|SMAD7_HUMAN Mothers against decapentaplegic homolog 7 OS=Homo sapiens GN=SMAD7
PE=1 SV=1
Length = 426
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 25/115 (21%)
Query: 29 LRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHL----------------LPNAH- 71
L H+++K+LK+ +LE L++A+ES G + C+LLP L P+++
Sbjct: 95 LTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPAGAQPAQPPSSYS 154
Query: 72 --FLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCK 124
L C+++RWPD+ E+K+L C+SY +P +CCNP+H SR C+
Sbjct: 155 LPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPE------LVCCNPHHLSRLCE 203
>sp|O35253|SMAD7_MOUSE Mothers against decapentaplegic homolog 7 OS=Mus musculus GN=Smad7
PE=1 SV=1
Length = 426
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 25/115 (21%)
Query: 29 LRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHL----------------LPNAH- 71
L H+++K+LK+ +LE L++A+ES G + C+LLP L P+++
Sbjct: 95 LTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPASAQPAQPPSSYS 154
Query: 72 --FLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCK 124
L C+++RWPD+ E+K+L C+SY +P +CCNP+H SR C+
Sbjct: 155 LPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPE------LVCCNPHHLSRLCE 203
>sp|O88406|SMAD7_RAT Mothers against decapentaplegic homolog 7 OS=Rattus norvegicus
GN=Smad7 PE=2 SV=2
Length = 426
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 25/115 (21%)
Query: 29 LRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHL----------------LPNAH- 71
L H+++K+LK+ +LE L++A+ES G + C+LLP L P+++
Sbjct: 95 LTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPASAQPAQPPSSYS 154
Query: 72 --FLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCK 124
L C+++RWPD+ E+K+L C+SY +P +CCNP+H SR C+
Sbjct: 155 LPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPE------LVCCNPHHLSRLCE 203
>sp|P45896|SMA3_CAEEL Dwarfin sma-3 OS=Caenorhabditis elegans GN=sma-3 PE=2 SV=1
Length = 393
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+S P+EL+ + C YE SS +YIC NPYH+ R
Sbjct: 86 HVIYCRVWRWPDISSPHELRSIDTCSYPYES-----SSKTMYICINPYHYQR 132
>sp|P45897|SMA4_CAEEL Dwarfin sma-4 OS=Caenorhabditis elegans GN=sma-4 PE=2 SV=1
Length = 570
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 23/103 (22%)
Query: 32 TLIKRLKDS--ELETLVEAIESHGTNMSPCILLPSHL-----------LPNAHFLCCQLW 78
+L+K+LKD EL+ L+ A+ S+G + C+ + L +P H + ++W
Sbjct: 174 SLVKKLKDKRIELDALITAVTSNGKQPTGCVTIQRSLDGRLQVAGRKGVP--HVVYARIW 231
Query: 79 RWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
RWP VS+ EL KL C + S P + IC NPYH+ R
Sbjct: 232 RWPKVSK-NELVKLVQC---QTSSDHPDN----ICINPYHYER 266
>sp|Q02330|SMA2_CAEEL Dwarfin sma-2 OS=Caenorhabditis elegans GN=sma-2 PE=2 SV=2
Length = 418
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 29 LRHTLIKRLKDSELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWR 79
L LIK K + LE L A+ G + C+ +P SH H + C+++R
Sbjct: 33 LMKKLIKHNKQA-LENLEFALRCQGQQKTECVTIPRSLDGRLQISHRKALPHVIYCRVYR 91
Query: 80 WPDVSEPYELKKLPNCDS-YECSDPSPSSSDLYICCNPYHWSR 121
WPD+ +ELK + +C YE S IC NPYH+ R
Sbjct: 92 WPDLQSHHELKAIEDCRFCYE-------SGQKDICINPYHYKR 127
>sp|P42003|MAD_DROME Protein mothers against dpp OS=Drosophila melanogaster GN=Mad PE=1
SV=1
Length = 455
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 32 TLIKRLKDSE--LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRW 80
+L+K+LK + +E L A+ G S C+ +P SH H + C++WRW
Sbjct: 50 SLVKKLKKRKGAIEELERALSCPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRW 108
Query: 81 PDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
PD+ +ELK L C Y S+ +C NPYH+ R
Sbjct: 109 PDLQSHHELKPLELCQ-YPF-----SAKQKEVCINPYHYKR 143
>sp|O70436|SMAD2_RAT Mothers against decapentaplegic homolog 2 OS=Rattus norvegicus
GN=Smad2 PE=2 SV=1
Length = 467
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +ELK + NC+ + S +C NPYH+ R
Sbjct: 118 SHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEY------AFSLKKDEVCVNPYHYQR 169
>sp|Q9W7E7|SMAD5_DANRE Mothers against decapentaplegic homolog 5 OS=Danio rerio GN=smad5
PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEDLEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ Y S +C NPYH+ R
Sbjct: 108 EVCE-YPF-----GSKQKEVCINPYHYKR 130
>sp|Q5R7C0|SMAD2_PONAB Mothers against decapentaplegic homolog 2 OS=Pongo abelii GN=SMAD2
PE=2 SV=1
Length = 467
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +ELK + NC+ ++ + +C NPYH+ R
Sbjct: 118 SHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKEDE-------VCVNPYHYQR 169
>sp|P84023|SMAD3_CHICK Mothers against decapentaplegic homolog 3 OS=Gallus gallus GN=SMAD3
PE=2 SV=1
Length = 426
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 40 SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELK 90
+L+ L +AI + N + CI +P SH H + C+LWRWPD+ +EL+
Sbjct: 46 GQLDELEKAITTQNIN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 104
Query: 91 KLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
+ C+ + + +C NPYH+ R
Sbjct: 105 AMEMCEY------AFNMKKDEVCVNPYHYQR 129
>sp|P84025|SMAD3_RAT Mothers against decapentaplegic homolog 3 OS=Rattus norvegicus
GN=Smad3 PE=1 SV=1
Length = 425
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 40 SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELK 90
+L+ L +AI + N + CI +P SH H + C+LWRWPD+ +EL+
Sbjct: 46 GQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 104
Query: 91 KLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
+ C+ + + +C NPYH+ R
Sbjct: 105 AMELCEF------AFNMKKDEVCVNPYHYQR 129
>sp|P84024|SMAD3_PIG Mothers against decapentaplegic homolog 3 OS=Sus scrofa GN=SMAD3
PE=2 SV=1
Length = 425
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 40 SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELK 90
+L+ L +AI + N + CI +P SH H + C+LWRWPD+ +EL+
Sbjct: 46 GQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 104
Query: 91 KLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
+ C+ + + +C NPYH+ R
Sbjct: 105 AMELCEF------AFNMKKDEVCVNPYHYQR 129
>sp|Q8BUN5|SMAD3_MOUSE Mothers against decapentaplegic homolog 3 OS=Mus musculus GN=Smad3
PE=1 SV=2
Length = 425
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 40 SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELK 90
+L+ L +AI + N + CI +P SH H + C+LWRWPD+ +EL+
Sbjct: 46 GQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 104
Query: 91 KLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
+ C+ + + +C NPYH+ R
Sbjct: 105 AMELCEF------AFNMKKDEVCVNPYHYQR 129
>sp|P84022|SMAD3_HUMAN Mothers against decapentaplegic homolog 3 OS=Homo sapiens GN=SMAD3
PE=1 SV=1
Length = 425
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 40 SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELK 90
+L+ L +AI + N + CI +P SH H + C+LWRWPD+ +EL+
Sbjct: 46 GQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELR 104
Query: 91 KLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
+ C+ + + +C NPYH+ R
Sbjct: 105 AMELCEF------AFNMKKDEVCVNPYHYQR 129
>sp|Q62432|SMAD2_MOUSE Mothers against decapentaplegic homolog 2 OS=Mus musculus GN=Smad2
PE=1 SV=2
Length = 467
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +ELK + NC+ ++ +C NPYH+ R
Sbjct: 118 SHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKKDE-------VCVNPYHYQR 169
>sp|Q1W668|SMAD2_BOVIN Mothers against decapentaplegic homolog 2 OS=Bos taurus GN=SMAD2
PE=2 SV=1
Length = 467
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +ELK + NC+ ++ +C NPYH+ R
Sbjct: 118 SHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKKDE-------VCVNPYHYQR 169
>sp|Q56I99|SMAD5_CHICK Mothers against decapentaplegic homolog 5 OS=Gallus gallus GN=SMAD5
PE=2 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEELEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ S +C NPYH+ R
Sbjct: 108 DICEF------PFGSKQKEVCINPYHYKR 130
>sp|Q15796|SMAD2_HUMAN Mothers against decapentaplegic homolog 2 OS=Homo sapiens GN=SMAD2
PE=1 SV=1
Length = 467
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +ELK + NC+ ++ +C NPYH+ R
Sbjct: 118 SHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKKDE-------VCVNPYHYQR 169
>sp|Q9R1V3|SMAD5_RAT Mothers against decapentaplegic homolog 5 OS=Rattus norvegicus
GN=Smad5 PE=2 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEELEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ S +C NPYH+ R
Sbjct: 108 DICEF------PFGSKQKEVCINPYHYKR 130
>sp|Q5R6H7|SMAD5_PONAB Mothers against decapentaplegic homolog 5 OS=Pongo abelii GN=SMAD5
PE=2 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEELEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ S +C NPYH+ R
Sbjct: 108 DICEF------PFGSKQKEVCINPYHYKR 130
>sp|Q99717|SMAD5_HUMAN Mothers against decapentaplegic homolog 5 OS=Homo sapiens GN=SMAD5
PE=1 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEELEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ S +C NPYH+ R
Sbjct: 108 DICEF------PFGSKQKEVCINPYHYKR 130
>sp|P97454|SMAD5_MOUSE Mothers against decapentaplegic homolog 5 OS=Mus musculus GN=Smad5
PE=1 SV=2
Length = 465
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 42 LETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWRWPDVSEPYELKKL 92
+E L +A+ S G S C+ +P SH H + C++WRWPD+ +ELK L
Sbjct: 49 MEELEKALSSPG-QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPL 107
Query: 93 PNCDSYECSDPSPSSSDLYICCNPYHWSR 121
C+ S +C NPYH+ R
Sbjct: 108 DICEF------PFGSKQKEVCINPYHYKR 130
>sp|Q9I8V2|SMAD1_DANRE Mothers against decapentaplegic homolog 1 OS=Danio rerio GN=smad1
PE=2 SV=1
Length = 472
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKAL------ECCEFPFGSKQKDVCINPYHYKR 129
>sp|P97588|SMAD1_RAT Mothers against decapentaplegic homolog 1 OS=Rattus norvegicus
GN=Smad1 PE=1 SV=1
Length = 468
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYKR 129
>sp|Q9I962|SMAD1_COTJA Mothers against decapentaplegic homolog 1 OS=Coturnix coturnix
japonica GN=SMAD1 PE=2 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYKR 129
>sp|P70340|SMAD1_MOUSE Mothers against decapentaplegic homolog 1 OS=Mus musculus GN=Smad1
PE=1 SV=2
Length = 465
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYKR 129
>sp|Q1JQA2|SMAD1_BOVIN Mothers against decapentaplegic homolog 1 OS=Bos taurus GN=SMAD1
PE=1 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYKR 129
>sp|Q15797|SMAD1_HUMAN Mothers against decapentaplegic homolog 1 OS=Homo sapiens GN=SMAD1
PE=1 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 85 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYKR 129
>sp|O15198|SMAD9_HUMAN Mothers against decapentaplegic homolog 9 OS=Homo sapiens GN=SMAD9
PE=1 SV=1
Length = 467
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 89 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYRR 133
>sp|Q9JIW5|SMAD9_MOUSE Mothers against decapentaplegic homolog 9 OS=Mus musculus GN=Smad9
PE=1 SV=2
Length = 430
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 71 HFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 89 HVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYRR 133
>sp|O54835|SMAD9_RAT Mothers against decapentaplegic homolog 9 OS=Rattus norvegicus
GN=Smad9 PE=1 SV=1
Length = 434
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C++WRWPD+ +ELK L EC + S +C NPYH+ R
Sbjct: 82 SHRKGLPHVIYCRVWRWPDLQSHHELKPL------ECCEFPFGSKQKEVCINPYHYRR 133
>sp|Q9I9P9|SMAD2_DANRE Mothers against decapentaplegic homolog 2 OS=Danio rerio GN=smad2
PE=2 SV=1
Length = 468
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 64 SHLLPNAHFLCCQLWRWPDVSEPYELKKLPNCD-SYECSDPSPSSSDLYICCNPYHWSR 121
SH H + C+LWRWPD+ +EL+ + C+ ++ +C NPYH+ R
Sbjct: 119 SHRKGLPHVIYCRLWRWPDLHSHHELRAIETCEYAFNLKKDE-------VCVNPYHYQR 170
>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 OS=Mus musculus GN=Smad4
PE=1 SV=2
Length = 551
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 26/92 (28%)
Query: 44 TLVEAIESHGTNMSPCILLPSHL-----------LPNAHFLCCQLWRWPDVSEPYELKKL 92
+L+ AI ++G + S C+ + L P H + +LWRWPD+ + ELK +
Sbjct: 56 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFP--HVIYARLWRWPDLHKN-ELKHV 112
Query: 93 PNCD---SYECSDPSPSSSDLYICCNPYHWSR 121
C +C +C NPYH+ R
Sbjct: 113 KYCQYAFDLKCDS---------VCVNPYHYER 135
>sp|Q13485|SMAD4_HUMAN Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4
PE=1 SV=1
Length = 552
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 22/90 (24%)
Query: 44 TLVEAIESHGTNMSPCILLPSHL---LPNA------HFLCCQLWRWPDVSEPYELKKLPN 94
+L+ AI ++G + S C+ + L L A H + +LWRWPD+ + ELK +
Sbjct: 56 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHK-NELKHVKY 114
Query: 95 CD---SYECSDPSPSSSDLYICCNPYHWSR 121
C +C +C NPYH+ R
Sbjct: 115 CQYAFDLKCDS---------VCVNPYHYER 135
>sp|Q9GKQ9|SMAD4_PIG Mothers against decapentaplegic homolog 4 OS=Sus scrofa GN=SMAD4
PE=2 SV=1
Length = 552
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 22/90 (24%)
Query: 44 TLVEAIESHGTNMSPCILLPSHLLPN---------AHFLCCQLWRWPDVSEPYELKKLPN 94
+L+ AI ++G + S C+ + L H + +LWRWPD+ + ELK +
Sbjct: 56 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHK-NELKHVKY 114
Query: 95 CD---SYECSDPSPSSSDLYICCNPYHWSR 121
C +C +C NPYH+ R
Sbjct: 115 CQYAFDLKCDS---------VCVNPYHYER 135
>sp|Q1HE26|SMAD4_BOVIN Mothers against decapentaplegic homolog 4 OS=Bos taurus GN=SMAD4
PE=2 SV=1
Length = 553
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 22/90 (24%)
Query: 44 TLVEAIESHGTNMSPCILLPSHLLPN---------AHFLCCQLWRWPDVSEPYELKKLPN 94
+L+ AI ++G + S C+ + L H + +LWRWPD+ + ELK +
Sbjct: 56 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHK-NELKHVKY 114
Query: 95 CD---SYECSDPSPSSSDLYICCNPYHWSR 121
C +C +C NPYH+ R
Sbjct: 115 CQYAFDLKCDS---------VCVNPYHYER 135
>sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS=Rattus norvegicus
GN=Smad4 PE=1 SV=1
Length = 552
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 22/90 (24%)
Query: 44 TLVEAIESHGTNMSPCILLPSHLLPN---------AHFLCCQLWRWPDVSEPYELKKLPN 94
+L+ AI ++G + S C+ + L H + +LWRWPD+ + ELK +
Sbjct: 56 SLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHK-NELKHVKY 114
Query: 95 CD---SYECSDPSPSSSDLYICCNPYHWSR 121
C +C +C NPYH+ R
Sbjct: 115 CQYAFDLKCDS---------VCVNPYHYER 135
>sp|Q43009|SUS3_ORYSJ Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1
SV=2
Length = 816
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 33 LIKRLKDSELETLVEAIESHGTNMSPCILLPSHLLPNAHFLCC 75
++ +++ E E L+ I+ G N++P IL+ + LLP+AH C
Sbjct: 311 ILDQVRAMENEMLLR-IKQQGLNITPRILIVTRLLPDAHGTTC 352
>sp|P12890|AMDB_XENLA Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis
GN=pam-b PE=2 SV=1
Length = 875
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 9 ENSCYCCAKTLDEVPYYESLLRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLLP 68
+NSCYC L YE R L + L T + ++ + I +P
Sbjct: 18 QNSCYCFRSPLSVFKRYEESTR-----SLSNDCLGTTRPVMSPGSSDYTLDIRMPGVTPT 72
Query: 69 NAHFLCCQLWRWPDVSEPYELKKLP--NCDS------YECSDPSPSSSDLYIC----CNP 116
+ C+ +R P E Y + P N D+ + C+ PS S+ D + C CN
Sbjct: 73 ESDTYLCKSYRLPVDDEAYVVDYRPHANMDTAHHMLLFGCNVPS-STDDYWDCSAGTCND 131
Query: 117 -----YHWSRRCKSVSEEISIGIGYGREECGRRF 145
Y W++ +G G + R F
Sbjct: 132 KSSIMYAWAKNAPPTKLPEGVGFQVGGKSGSRYF 165
>sp|O25903|PLSC_HELPY 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=plsC PE=3 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 3 LEEDTPENSCYCCAKTLDEVPYYESLLRHT---LIKRLKDSELETLVEAIESHGTNMSPC 59
LE P N C+ K L E+P+Y L T LI R + +L++A + P
Sbjct: 83 LEAYHPRNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPL 142
Query: 60 ILLP 63
++ P
Sbjct: 143 VIFP 146
>sp|Q9ZJN8|PLSC_HELPJ 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Helicobacter
pylori (strain J99) GN=plsC PE=3 SV=1
Length = 237
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 3 LEEDTPENSCYCCAKTLDEVPYYESLLRHT---LIKRLKDSELETLVEAIESHGTNMSPC 59
LE P N C+ K L E+P+Y L T LI R + +L++A + P
Sbjct: 83 LEAYHPSNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPL 142
Query: 60 ILLP 63
++ P
Sbjct: 143 VIFP 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,405,688
Number of Sequences: 539616
Number of extensions: 2721680
Number of successful extensions: 5585
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5460
Number of HSP's gapped (non-prelim): 88
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)