Query psy8244
Match_columns 163
No_of_seqs 115 out of 196
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 22:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00049 MH1 MH1 is a small DNA 100.0 5.5E-45 1.2E-49 281.1 9.3 106 13-124 6-121 (121)
2 smart00523 DWA Domain A in dwa 100.0 9.4E-45 2E-49 275.6 10.1 100 21-126 1-109 (109)
3 KOG3701|consensus 100.0 5.4E-43 1.2E-47 313.3 11.6 122 7-134 9-142 (411)
4 PF03165 MH1: MH1 domain; Int 100.0 4.8E-42 1E-46 258.0 3.2 92 26-123 1-103 (103)
5 KOG3663|consensus 90.4 0.63 1.4E-05 43.6 5.8 39 24-64 70-108 (518)
6 PF11669 WBP-1: WW domain-bind 51.7 6.2 0.00013 29.6 0.6 18 116-133 84-102 (102)
7 KOG2884|consensus 49.6 31 0.00067 30.3 4.6 42 23-65 118-176 (259)
8 PF13442 Cytochrome_CBB3: Cyto 36.3 6.2 0.00013 25.9 -1.4 17 6-22 8-24 (67)
9 PF12677 DUF3797: Domain of un 33.7 14 0.00031 25.0 0.1 16 1-16 31-46 (49)
10 PF06345 Drf_DAD: DRF Autoregu 27.8 61 0.0013 16.9 1.8 11 41-51 2-12 (15)
11 PF14376 Haem_bd: Haem-binding 27.4 18 0.0004 28.1 -0.3 49 7-56 39-108 (137)
12 PF02335 Cytochrom_C552: Cytoc 26.6 28 0.00061 32.5 0.7 29 6-37 269-297 (434)
13 PF02048 Enterotoxin_ST: Heat- 25.7 23 0.00049 24.4 -0.0 9 109-117 42-50 (54)
14 PF15466 DUF4635: Domain of un 24.9 1E+02 0.0022 24.7 3.5 28 23-50 89-118 (135)
15 PF09205 DUF1955: Domain of un 24.4 73 0.0016 26.3 2.6 37 15-51 78-114 (161)
16 PF09889 DUF2116: Uncharacteri 21.7 1.8E+02 0.0038 20.1 3.8 32 8-39 2-34 (59)
17 TIGR03046 PS_II_psbV2 photosys 21.0 19 0.00042 29.2 -1.3 19 6-24 60-78 (155)
18 PRK13697 cytochrome c6; Provis 20.6 13 0.00028 26.7 -2.2 16 5-20 32-47 (111)
19 PF07624 PSD2: Protein of unkn 20.5 1.6E+02 0.0034 20.5 3.4 33 19-51 37-71 (76)
20 PF09164 VitD-bind_III: Vitami 20.2 18 0.00039 26.0 -1.4 41 24-64 13-53 (68)
No 1
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove. MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.
Probab=100.00 E-value=5.5e-45 Score=281.11 Aligned_cols=106 Identities=36% Similarity=0.690 Sum_probs=98.0
Q ss_pred eeeeec-CCCchhHHHHHHHHHHHHhchh-cHHHHHHHHHcCCCCCCCceEecCCC--C------CCceeeeeeeecCCC
Q psy8244 13 YCCAKT-LDEVPYYESLLRHTLIKRLKDS-ELETLVEAIESHGTNMSPCILLPSHL--L------PNAHFLCCQLWRWPD 82 (163)
Q Consensus 13 ~~~~~~-g~~~e~~a~kav~sLvKkLKk~-~Le~L~~AVes~G~~~s~CVtiprsd--l------g~PHViyCRLwRWPD 82 (163)
+.++++ ||++++|++||+++||||||++ +||.|++||+|+|+.+|+||+|||+| + ++|||+|||||||||
T Consensus 6 ll~~~~~~~~~e~~~~k~~~sLlKkLKk~~~le~L~~AV~s~g~~~t~CV~i~r~D~rl~~~~r~~~phv~~crlwRWpD 85 (121)
T cd00049 6 LLGEKKIGGEEEKWKKKAAESLLKKLKKKIQLEELEDAVESRGGPPTRCVLIPRSDGRLQVSHRKGLPHVIYCRVWRWPD 85 (121)
T ss_pred hhcccccCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHcCCCCCCCeEEeccccccccccccCCCcceEEEeeeeccc
Confidence 345666 8999999999999999999997 99999999999999999999999975 2 799999999999999
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCCcceeeCCCccceeec
Q psy8244 83 VSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCK 124 (163)
Q Consensus 83 Lq~~~ELK~L~~C~~~~~~~~~~~~~~~~VCcNPYHYsRv~~ 124 (163)
|++++|||++++|++++..+.+ +||||||||+||+.
T Consensus 86 L~~~~eLk~l~~C~~~~~~~~~------~vC~NPyHy~rv~~ 121 (121)
T cd00049 86 LRSNHELKRLETCEHAFDSKPD------EVCINPYHYSRVVR 121 (121)
T ss_pred cCchHhheeCccCCCccccCCC------eEEeCCceeeeecC
Confidence 9999999999999998887776 89999999999973
No 2
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=100.00 E-value=9.4e-45 Score=275.56 Aligned_cols=100 Identities=39% Similarity=0.761 Sum_probs=93.7
Q ss_pred CchhHHHHHHHHHHHHhchhcHHHHHHHHHcCCCCCCCceEecCC-C--C------CCceeeeeeeecCCCCCCcccccc
Q psy8244 21 EVPYYESLLRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSH-L--L------PNAHFLCCQLWRWPDVSEPYELKK 91 (163)
Q Consensus 21 ~~e~~a~kav~sLvKkLKk~~Le~L~~AVes~G~~~s~CVtiprs-d--l------g~PHViyCRLwRWPDLq~~~ELK~ 91 (163)
.+|+|+++|+++|+||||+++||+|++||+|+|+++|+||+|||+ | + ++|||+||||||||||||++|||+
T Consensus 1 ~~ek~~~k~~~sL~KklK~k~le~L~~AV~s~g~~~t~CV~i~~~~dgrl~~~~~~~~phvi~crLfRWpdL~s~~eLk~ 80 (109)
T smart00523 1 VEEKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQVAHRKGLPHVLYCRLFRWPDLQSPHELKA 80 (109)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEeCcccCcccccccCCCCCcEEEEEEeeCCCCCCHHHcee
Confidence 368999999999999999999999999999999999999999996 4 2 799999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeCCCccceeeccc
Q psy8244 92 LPNCDSYECSDPSPSSSDLYICCNPYHWSRRCKSV 126 (163)
Q Consensus 92 L~~C~~~~~~~~~~~~~~~~VCcNPYHYsRv~~p~ 126 (163)
++.|++++..+++ +||||||||+|++.|+
T Consensus 81 l~~C~~~~~~~~~------~vC~NPyHy~rv~~p~ 109 (109)
T smart00523 81 LPTCEHAFESKSD------EVCCNPYHYSRVERPE 109 (109)
T ss_pred cccCCCcccCCCC------eEEeCCceEEEeecCC
Confidence 9999998877776 9999999999999874
No 3
>KOG3701|consensus
Probab=100.00 E-value=5.4e-43 Score=313.33 Aligned_cols=122 Identities=32% Similarity=0.562 Sum_probs=111.3
Q ss_pred CCCCceeeeeec-CCCchhHHHHHHHHHHHHhchhc--HHHHHHHHHcCCCCCCCceEecCC-C--C------CCceeee
Q psy8244 7 TPENSCYCCAKT-LDEVPYYESLLRHTLIKRLKDSE--LETLVEAIESHGTNMSPCILLPSH-L--L------PNAHFLC 74 (163)
Q Consensus 7 ~~~~~~~~~~~~-g~~~e~~a~kav~sLvKkLKk~~--Le~L~~AVes~G~~~s~CVtiprs-d--l------g~PHViy 74 (163)
+|.-.+++++|| |+++|+|++||+++||||||++. ||+|++||+|+|..+++||||||+ | | |+|||||
T Consensus 9 ~p~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~CvtiprslD~Rlq~~~rkg~Phviy 88 (411)
T KOG3701|consen 9 GPAVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIPRSLDGRLQVAHRKGFPHVIY 88 (411)
T ss_pred CcchhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECCCCCCccccccCCCCCCceEE
Confidence 456678999999 99999999999999999999975 999999999999999999999998 5 3 9999999
Q ss_pred eeeecCCCCCCccccccCCCCCCCCCCCCCCCCCCcceeeCCCccceeeccccCCCceec
Q psy8244 75 CQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCKSVSEEISIGI 134 (163)
Q Consensus 75 CRLwRWPDLq~~~ELK~L~~C~~~~~~~~~~~~~~~~VCcNPYHYsRv~~p~~PPpPysi 134 (163)
||||||||||+.+|||++++|++++..+++ .||||||||+|++.|...||+++.
T Consensus 89 ~rlwRwpdl~~~~elk~l~~C~~a~~~~~~------~vC~NPyHy~rv~~~~~~~~~~~~ 142 (411)
T KOG3701|consen 89 CRLWRWPDLQKNHELKRLECCEHAFESKSD------NVCINPYHYSRVESPPILPPPLSP 142 (411)
T ss_pred EEeecccccccchhheecccCCccccCCCC------CeeeCCcccceeecCCCCCcccCC
Confidence 999999999999999999999997776665 899999999999999777766653
No 4
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=100.00 E-value=4.8e-42 Score=257.96 Aligned_cols=92 Identities=41% Similarity=0.819 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhchh--cHHHHHHHHHcCCCCCCCceEecCC-CC--------CCceeeeeeeecCCCCCCccccccCCC
Q psy8244 26 ESLLRHTLIKRLKDS--ELETLVEAIESHGTNMSPCILLPSH-LL--------PNAHFLCCQLWRWPDVSEPYELKKLPN 94 (163)
Q Consensus 26 a~kav~sLvKkLKk~--~Le~L~~AVes~G~~~s~CVtiprs-dl--------g~PHViyCRLwRWPDLq~~~ELK~L~~ 94 (163)
.+||+++||||||++ +||+|++||+|+|+.+|+||+|||+ |. +.|||||||||||||||+++|||+++.
T Consensus 1 ~~k~~~sLlkkLK~~~~~le~L~~Av~s~g~~~t~CV~i~r~~dgrl~v~~~k~~phvl~crlwRwpdL~~~~eLk~l~~ 80 (103)
T PF03165_consen 1 CEKAIKSLLKKLKKKIGQLEELLKAVESRGDPPTKCVTIPRSLDGRLQVSGRKGLPHVLYCRLWRWPDLRHSHELKRLPH 80 (103)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHHHCTTTSTS---EEE--TTS-EEETTEEE-HHHHHHHHHT-TT--SCCCEEE-TT
T ss_pred ChHHHHHHHHHHccccchHHHHHHHHhcCCCCCCCcEEecCccCccccccccccCceEEEEEEechhhcCCHHhcccCCC
Confidence 379999999999997 9999999999999999999999987 42 899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeCCCccceee
Q psy8244 95 CDSYECSDPSPSSSDLYICCNPYHWSRRC 123 (163)
Q Consensus 95 C~~~~~~~~~~~~~~~~VCcNPYHYsRv~ 123 (163)
|++++..+.+ +||||||||+|||
T Consensus 81 C~~~~~~~~~------~vC~NPyHy~rv~ 103 (103)
T PF03165_consen 81 CRFAFDSKND------EVCCNPYHYSRVC 103 (103)
T ss_dssp -TT-GGG--S------EEE--GGGEEE--
T ss_pred CCChhhcCCC------CEEeCCcEeeecC
Confidence 9998777666 8999999999986
No 5
>KOG3663|consensus
Probab=90.39 E-value=0.63 Score=43.58 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhchhcHHHHHHHHHcCCCCCCCceEecC
Q psy8244 24 YYESLLRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPS 64 (163)
Q Consensus 24 ~~a~kav~sLvKkLKk~~Le~L~~AVes~G~~~s~CVtipr 64 (163)
|||.+..--|=|.+...--|.++.+|. |..+..||+--.
T Consensus 70 KWASRLLaKlrKDIr~e~rEdFVltIt--Gkk~p~CVlSnp 108 (518)
T KOG3663|consen 70 KWASRLLAKLRKDIRPEYREDFVLTIT--GKKPPCCVLSNP 108 (518)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhhc--CCCCCceeecCc
Confidence 566654444444444456899999996 567777776543
No 6
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=51.65 E-value=6.2 Score=29.60 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=13.4
Q ss_pred CCccceee-ccccCCCcee
Q psy8244 116 PYHWSRRC-KSVSEEISIG 133 (163)
Q Consensus 116 PYHYsRv~-~p~~PPpPys 133 (163)
|=.|++|. .|..||||||
T Consensus 84 pP~Y~ev~~~p~~pPPPYs 102 (102)
T PF11669_consen 84 PPSYSEVVSFPPTPPPPYS 102 (102)
T ss_pred CCCcHHhccCCCCCccCCC
Confidence 44677766 5678999997
No 7
>KOG2884|consensus
Probab=49.64 E-value=31 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhchh-----------------cHHHHHHHHHcCCCCCCCceEecCC
Q psy8244 23 PYYESLLRHTLIKRLKDS-----------------ELETLVEAIESHGTNMSPCILLPSH 65 (163)
Q Consensus 23 e~~a~kav~sLvKkLKk~-----------------~Le~L~~AVes~G~~~s~CVtiprs 65 (163)
-+-.+|..-.+.|+|||. .|.+++.|+..+ +..+.||++|++
T Consensus 118 i~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~-~~gshlv~Vppg 176 (259)
T KOG2884|consen 118 IEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGK-GDGSHLVSVPPG 176 (259)
T ss_pred chhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCC-CCCceEEEeCCC
Confidence 344566777788888862 278889999876 778999999997
No 8
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=36.32 E-value=6.2 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.2
Q ss_pred CCCCCceeeeeecCCCc
Q psy8244 6 DTPENSCYCCAKTLDEV 22 (163)
Q Consensus 6 ~~~~~~~~~~~~~g~~~ 22 (163)
.+++.+|..||..|...
T Consensus 8 ~ly~~~C~~CH~~~~~g 24 (67)
T PF13442_consen 8 ALYEQNCASCHGPGGAG 24 (67)
T ss_dssp HHHHHHTHHHHGTGSSS
T ss_pred HHHHhHhHHhcCCCccC
Confidence 45778999999977554
No 9
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=33.72 E-value=14 Score=24.97 Aligned_cols=16 Identities=44% Similarity=0.808 Sum_probs=14.0
Q ss_pred CccccCCCCCceeeee
Q psy8244 1 MILEEDTPENSCYCCA 16 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (163)
.|||||||-..|-|.+
T Consensus 31 liV~edtfkRtCkCGf 46 (49)
T PF12677_consen 31 LIVEEDTFKRTCKCGF 46 (49)
T ss_pred EEEeccceeeeecccc
Confidence 3899999999998875
No 10
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=27.77 E-value=61 Score=16.93 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=8.7
Q ss_pred cHHHHHHHHHc
Q psy8244 41 ELETLVEAIES 51 (163)
Q Consensus 41 ~Le~L~~AVes 51 (163)
.++.|++|+.+
T Consensus 2 vmdsllealqt 12 (15)
T PF06345_consen 2 VMDSLLEALQT 12 (15)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHc
Confidence 36788889887
No 11
>PF14376 Haem_bd: Haem-binding domain
Probab=27.37 E-value=18 Score=28.07 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=28.4
Q ss_pred CCCCceeeeeecCCCchhHHHH---------HHHH------------HHHHhchhcHHHHHHHHHcCCCCC
Q psy8244 7 TPENSCYCCAKTLDEVPYYESL---------LRHT------------LIKRLKDSELETLVEAIESHGTNM 56 (163)
Q Consensus 7 ~~~~~~~~~~~~g~~~e~~a~k---------av~s------------LvKkLKk~~Le~L~~AVes~G~~~ 56 (163)
+.+++|+-||--..+=.-++.= -|+. .-++.++..|+.++..|+. |.+|
T Consensus 39 il~~~CydCHSn~T~~PwYa~i~p~s~l~~~dI~~Gr~~lNfs~~~~~~~~~~~~~l~~i~~~I~~-g~MP 108 (137)
T PF14376_consen 39 ILKNSCYDCHSNNTRYPWYANIAPASWLMEKDIKEGRRHLNFSEWGSYSKRKQEAKLAKIEEVIED-GEMP 108 (137)
T ss_pred HHHccccccCCCCCCCccceecCchHHHHHHHHHHHHHHhCcchhhhcCcccCHHHHHHHHHHHHc-CCCC
Confidence 5689999999877543322221 1111 1122334568888888887 4433
No 12
>PF02335 Cytochrom_C552: Cytochrome c552; InterPro: IPR003321 The enzyme cytochrome c nitrite reductase (c552) catalyses the six-electron reduction of nitrite to ammonia as one of the key steps in the biological nitrogen cycle, where it participates in the anaerobic energy metabolism of dissimilatory nitrate ammonification. Cytochrome c nitrite reductase from Sulfurospirillum deleyianum is a functional dimer, with 10 close-packed haem groups of type c and an unusual lysine-coordinated high-spin haem at the active site [].; GO: 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1QDB_B 3TTB_B 3BNJ_A 3BNG_A 1FS8_A 2E80_A 3BNH_A 1FS7_A 2E81_A 3BNF_A ....
Probab=26.55 E-value=28 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=17.3
Q ss_pred CCCCCceeeeeecCCCchhHHHHHHHHHHHHh
Q psy8244 6 DTPENSCYCCAKTLDEVPYYESLLRHTLIKRL 37 (163)
Q Consensus 6 ~~~~~~~~~~~~~g~~~e~~a~kav~sLvKkL 37 (163)
+.++++|..||++ ++++.+..|...-.+.
T Consensus 269 ~n~~~sC~~CH~~---s~e~L~~~V~~~Q~~~ 297 (434)
T PF02335_consen 269 KNIENSCQTCHSE---SEEELKARVDAIQDRV 297 (434)
T ss_dssp GCHHHCTTTTSTS----HHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhcCC---CHHHHHHHHHHHHHHH
Confidence 3457899999983 4455555444444333
No 13
>PF02048 Enterotoxin_ST: Heat-stable enterotoxin ST; InterPro: IPR001489 This entry represents a group of heat-stable enterotoxins, such as STa from Escherichia coli, which is the cause of acute diarrhoea in infants and travellers in developing countries. The mature STa protein is a 19-residue peptide containing three disulphide bridges that are functionally important. STa contains an N-terminal signal peptide composed of two domains, Pre and Pro, involved in extracellular toxin release, and a core enterotoxigenic domain []. STa binds to and activates the guanylate cyclise C intestinal receptor, causing an increase in the intracellular levels of cyclic guanosine monophosphate (cGMP) [, , ].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ETN_A 1ETL_A 1ETM_A.
Probab=25.65 E-value=23 Score=24.43 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=4.1
Q ss_pred CcceeeCCC
Q psy8244 109 DLYICCNPY 117 (163)
Q Consensus 109 ~~~VCcNPY 117 (163)
..+|||||-
T Consensus 42 CCEvCCNPA 50 (54)
T PF02048_consen 42 CCEVCCNPA 50 (54)
T ss_dssp --TT--STT
T ss_pred HHHhhcCcc
Confidence 347999994
No 14
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=24.87 E-value=1e+02 Score=24.68 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHhch--hcHHHHHHHHH
Q psy8244 23 PYYESLLRHTLIKRLKD--SELETLVEAIE 50 (163)
Q Consensus 23 e~~a~kav~sLvKkLKk--~~Le~L~~AVe 50 (163)
.+|-+.-.+.++.||.+ ++||.|++.++
T Consensus 89 r~WLkenLhvflEkLE~EvreLEQlV~DLE 118 (135)
T PF15466_consen 89 RNWLKENLHVFLEKLEKEVRELEQLVRDLE 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999987 45666655443
No 15
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.37 E-value=73 Score=26.26 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=25.8
Q ss_pred eeecCCCchhHHHHHHHHHHHHhchhcHHHHHHHHHc
Q psy8244 15 CAKTLDEVPYYESLLRHTLIKRLKDSELETLVEAIES 51 (163)
Q Consensus 15 ~~~~g~~~e~~a~kav~sLvKkLKk~~Le~L~~AVes 51 (163)
|+--.+-.-+|--.|..+|+++=|+.|||.+..-+..
T Consensus 78 C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k 114 (161)
T PF09205_consen 78 CYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK 114 (161)
T ss_dssp HHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH--
T ss_pred HHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 4444455556888999999999999999999988863
No 16
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.73 E-value=1.8e+02 Score=20.12 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=24.5
Q ss_pred CCCceeeeeecCCCchhHHH-HHHHHHHHHhch
Q psy8244 8 PENSCYCCAKTLDEVPYYES-LLRHTLIKRLKD 39 (163)
Q Consensus 8 ~~~~~~~~~~~g~~~e~~a~-kav~sLvKkLKk 39 (163)
|-+||.-|.+.-+.++.|.. +.-+...|+-|+
T Consensus 2 ~HkHC~~CG~~Ip~~~~fCS~~C~~~~~k~qk~ 34 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDESFCSPKCREEYRKRQKR 34 (59)
T ss_pred CCCcCCcCCCcCCcchhhhCHHHHHHHHHHHHH
Confidence 56899999999999999996 444555555554
No 17
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=21.00 E-value=19 Score=29.24 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=14.8
Q ss_pred CCCCCceeeeeecCCCchh
Q psy8244 6 DTPENSCYCCAKTLDEVPY 24 (163)
Q Consensus 6 ~~~~~~~~~~~~~g~~~e~ 24 (163)
++|.++|..||-.|.....
T Consensus 60 ~lF~~~Ca~CH~gG~n~~~ 78 (155)
T TIGR03046 60 NLFESNCLNCHVGGATLPN 78 (155)
T ss_pred HHHHHHHHHhccCCCCCcC
Confidence 6789999999988754443
No 18
>PRK13697 cytochrome c6; Provisional
Probab=20.61 E-value=13 Score=26.74 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=12.2
Q ss_pred cCCCCCceeeeeecCC
Q psy8244 5 EDTPENSCYCCAKTLD 20 (163)
Q Consensus 5 ~~~~~~~~~~~~~~g~ 20 (163)
+.++.++|..||-.|.
T Consensus 32 ~~ly~~~C~~CHg~g~ 47 (111)
T PRK13697 32 EQVFSANCASCHAGGK 47 (111)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3457789999998654
No 19
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=20.48 E-value=1.6e+02 Score=20.49 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCCchhHHHHHHHHHHHHhchh--cHHHHHHHHHc
Q psy8244 19 LDEVPYYESLLRHTLIKRLKDS--ELETLVEAIES 51 (163)
Q Consensus 19 g~~~e~~a~kav~sLvKkLKk~--~Le~L~~AVes 51 (163)
|.+.+.--+.+++.++.+++++ .+.+|+.+|-+
T Consensus 37 GR~~~~~D~~~i~~i~~~~~~~~y~~~~Li~~iv~ 71 (76)
T PF07624_consen 37 GRPLEFSDRCEIDRIVEAFKANGYRLRDLILAIVT 71 (76)
T ss_pred CCCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4444445566788888888875 38888888764
No 20
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=20.22 E-value=18 Score=25.98 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhchhcHHHHHHHHHcCCCCCCCceEecC
Q psy8244 24 YYESLLRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPS 64 (163)
Q Consensus 24 ~~a~kav~sLvKkLKk~~Le~L~~AVes~G~~~s~CVtipr 64 (163)
+|-+|..+.|-.||-+-.-.+|.+-|+.|++-.|+|..|..
T Consensus 13 EyKKrL~e~l~~k~P~at~~~l~~lve~RsdFAS~CC~~Ns 53 (68)
T PF09164_consen 13 EYKKRLAERLRAKLPDATPTELKELVEKRSDFASKCCSINS 53 (68)
T ss_dssp HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHSSTT-
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhHHHHhhccCC
Confidence 47889999999999984444444445556566677776643
Done!