RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8244
(163 letters)
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1,
transcription factor, DNA binding; HET: DNA; 2.71A {Mus
musculus}
Length = 132
Score = 82.7 bits (204), Expect = 3e-21
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 31 HTLIKRLKD--SELETLVEAIESHGTNMSPCILLPSHLLPNA---------HFLCCQLWR 79
+L+K+LK+ EL++L+ AI ++G + S C+ + L H + +LWR
Sbjct: 33 ESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWR 92
Query: 80 WPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRC 123
WPD+ ELK + C +C NPYH+ R
Sbjct: 93 WPDLH-KNELKHVKYCQYAFDLKCD------SVCVNPYHYERVV 129
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling,
zinc-binding module, transcription/DNA complex; 2.40A
{Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Length = 144
Score = 82.3 bits (203), Expect = 7e-21
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 31 HTLIKRLKDS-ELETLVEAIESHGTNMSPCILLPSHLLPNA---------HFLCCQLWRW 80
+L+K+LK + +L+ L +AI + N + CI +P L H + C+LWRW
Sbjct: 36 KSLVKKLKKTGQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRW 94
Query: 81 PDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSRRCKSVS 127
PD+ +EL+ + C+ +C NPYH+ R V
Sbjct: 95 PDLHSHHELRAMELCEFAFNMKKD------EVCVNPYHYQRVETPVL 135
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta
hairpin, nucleus, transcription; 2.70A {Mus musculus}
Length = 124
Score = 81.2 bits (200), Expect = 1e-20
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 31 HTLIKRLKD--SELETLVEAIESHGTNMSPCILLP---------SHLLPNAHFLCCQLWR 79
L+K+LK +E L +A+ G S C+ +P SH H + C++WR
Sbjct: 27 DALVKKLKKKKGAMEELEKALSCPGQP-SNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWR 85
Query: 80 WPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
WPD+ +ELK L C+ S +C NPYH+ R
Sbjct: 86 WPDLQSHHELKPLECCEFPFGSKQK------EVCINPYHYKR 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.036
Identities = 13/132 (9%), Positives = 35/132 (26%), Gaps = 46/132 (34%)
Query: 2 ILEEDT--PENSCYCCAKTL----DEVPYYE------SLLRHTLIKRLKDSELETLVEAI 49
+ P L +V + L +++L+++ ++
Sbjct: 380 VFPPSAHIPT-------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---- 428
Query: 50 ESHGTNMSPCILLPSHLLPNAH--FLCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSS 107
+ + + H + + Y + K +++ D P
Sbjct: 429 --PSIYLE--LKVKLENEYALHRSIV-----------DHYNIPK-----TFDSDDLIPPY 468
Query: 108 SDLYICCN-PYH 118
D Y + +H
Sbjct: 469 LDQYFYSHIGHH 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.041
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 62 LP------SHLLPNA-HFLCCQLWRWPDVS-EPYELKKLPNCDSYECSDPSPSSSDLY-- 111
LP SHLL A + L + +VS +++ +P D+++ SD S +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISER 478
Query: 112 ----ICCNPYHW 119
I P W
Sbjct: 479 IVDCIIRLPVKW 490
Score = 30.8 bits (69), Expect = 0.19
Identities = 27/159 (16%), Positives = 40/159 (25%), Gaps = 65/159 (40%)
Query: 19 LDEVPYYESLLR------HTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLLPNAHF 72
+E LR H L+ L ETL E L+ + L F
Sbjct: 170 FEE-------LRDLYQTYHVLVGDLIKFSAETLSE-------------LIRTTLDAEKVF 209
Query: 73 -LCCQLWRWPDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPY-----------HWS 120
+ W L+ +PS + Y+ P H+
Sbjct: 210 TQGLNILEW--------LE-----------NPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 121 RRCKSVSEEISIGIGYGREECGRRFCGLWKWDLGIVIMV 159
K +G+ E G G+V V
Sbjct: 251 VTAKL--------LGFTPGELRSYLKGATGHSQGLVTAV 281
Score = 26.6 bits (58), Expect = 5.0
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 9 ENSCYCCAKTLDEVPYYESLLRHTLIKRLKDSEL-ETL-VEAIESH 52
EN Y A L + ++L ++++ EL ++L +E +E H
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.1
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 85 EPYELKKLPNCDS---YECSDPSPS 106
E LKKL S Y D +P+
Sbjct: 18 EKQALKKLQA--SLKLYA-DDSAPA 39
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 26.4 bits (57), Expect = 5.1
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 22 VPYYESLLRHTLIKRLKDSELETLVEAIESHGTNMSPCILLPSHLLPNAHFLCCQLWR-W 80
P YE L H ++ + + ++ + +SP LP+HLL + + W
Sbjct: 234 KPLYEHL--HAYVRA----------KLMNAYPSYISPIGCLPAHLLGDMWG---RFWTNL 278
Query: 81 PDVSEPYELKKLPN 94
++ P+ K +
Sbjct: 279 YSLTVPFGQKPNID 292
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 26.0 bits (57), Expect = 7.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 13 YCCAKTLDEVPYYESLLRHTLIKRLKDSE 41
C K E + L+ H IKR E
Sbjct: 307 KCLIKNPAERADLKQLMVHAFIKRSDAEE 335
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 25.4 bits (56), Expect = 9.1
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 13 YCCAKTLDEVPYYESLLRHTLIKRLKDSE--LETLVEAIE 50
C K + P E L++H I+ + L + I+
Sbjct: 269 SCLVKNHSQRPATEQLMKHPFIRDQPNERQVRIQLKDHID 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.472
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,615,124
Number of extensions: 141323
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 29
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)