RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8244
         (163 letters)



>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 84.1 bits (208), Expect = 3e-22
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 31  HTLIKRLKDS-ELETLVEAIESHGTNMSPCILLPSHLLPNA---------HFLCCQLWRW 80
            +L+K+LK + +L+ L +AI +   N + CI +P  L             H + C+LWRW
Sbjct: 30  KSLVKKLKKTGQLDELEKAITTQNVN-TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRW 88

Query: 81  PDVSEPYELKKLPNCDSYECSDPSPSSSDLYICCNPYHWSR 121
           PD+   +EL+ +  C+               +C NPYH+ R
Sbjct: 89  PDLHSHHELRAMELCEFAFNMKKD------EVCVNPYHYQR 123


>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle
          domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
          Length = 78

 Score = 25.6 bits (56), Expect = 1.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 17 KTLDEVPYYESLLRHTLIKRLKDSELETLVEAI 49
           T D++     L  +  +K L + E+  LVE  
Sbjct: 40 TTADKILELAGLKPNKKVKNLTEEEITRLVETF 72


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 15  CAKTLDEVPYYESLLRHTLIK-----RLKDSELETLVE 47
           CAK + EVPY  S +    +K     +L D  ++ L E
Sbjct: 85  CAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAE 122


>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda
           [TaxId: 10710]}
          Length = 179

 Score = 25.6 bits (54), Expect = 2.3
 Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 3/117 (2%)

Query: 35  KRLKDSELETLVEAIESHGTNMSPCILLPSHLLPNAHFLCCQLWRWPDVSEPYELKKLPN 94
            RL   E   + +A ES    +   + L   ++           +W D+ + Y      +
Sbjct: 2   SRLTADEYLKIYQAAESSPCWLRLAMEL--AVVTGQRVGDLCEMKWSDIVDGYL-YVEQS 58

Query: 95  CDSYECSDPSPSSSDLYICCNPYHWSRRCKSVSEEISIGIGYGREECGRRFCGLWKW 151
               + + P+    D           +  + +  E  I                +  
Sbjct: 59  KTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMR 115


>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3
          {Methanococcus maripaludis [TaxId: 39152]}
          Length = 116

 Score = 24.5 bits (53), Expect = 4.3
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 1  MILEEDTPENSCYCCAKTLDEVPYYESLLRHTLIKRL 37
          +IL E    N CYC  +  ++V          LI RL
Sbjct: 56 IILNEVISGNECYCAFELEEKVLAEVG--DRVLITRL 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.472 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,360
Number of extensions: 32169
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 20
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)