Query psy8245
Match_columns 629
No_of_seqs 272 out of 303
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3648|consensus 100.0 3E-142 6E-147 1140.4 34.3 615 4-629 218-947 (1179)
2 KOG3648|consensus 100.0 1E-108 3E-113 881.4 30.6 541 12-629 105-701 (1179)
3 PF00839 Cys_rich_FGFR: Cystei 99.2 9.6E-12 2.1E-16 99.4 4.5 57 255-313 1-57 (58)
4 PF00839 Cys_rich_FGFR: Cystei 99.1 4.9E-11 1.1E-15 95.4 4.5 57 448-506 1-57 (58)
5 PF06967 Mo-nitro_C: Mo-depend 20.0 39 0.00085 29.2 0.3 26 10-36 59-84 (84)
6 PF06747 CHCH: CHCH domain; I 9.7 2.4E+02 0.0053 19.5 2.0 23 495-520 8-30 (35)
7 PF06967 Mo-nitro_C: Mo-depend 9.0 1.8E+02 0.0038 25.3 1.2 27 134-161 58-84 (84)
8 KOG4743|consensus 7.6 3.1E+02 0.0068 27.5 2.4 41 299-339 15-55 (195)
9 PF08991 DUF1903: Domain of un 7.0 3.8E+02 0.0082 22.3 2.3 22 494-518 10-31 (67)
10 PF10203 Pet191_N: Cytochrome 6.7 3.8E+02 0.0083 22.3 2.2 25 50-74 27-51 (68)
No 1
>KOG3648|consensus
Probab=100.00 E-value=2.6e-142 Score=1140.36 Aligned_cols=615 Identities=38% Similarity=0.760 Sum_probs=585.4
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHhccCCCCCCCCCccCCchhHHHHHHHhhc----------cCChhhHHHHHH
Q psy8245 4 TQANLVEWIAFSDFRLISQFTDVCKTFVQKFTCGRVETDKSTKFSQGKTLECLQMHID----------KLDGDCRHQVLR 73 (629)
Q Consensus 4 ~~~~~~~~~~f~D~rli~~~~~~C~~Di~~~~C~~v~~g~~~~~sqg~vleCLq~~~~----------~Ls~~C~~~i~~ 73 (629)
+||+|++.++|||||||++|++.|++||+.|+||.+..|....|+||.+++||.+.+. ++++.|+|+|.+
T Consensus 218 ~~i~r~~~i~FSD~RLi~~F~~~Cr~~i~~~KC~~i~~G~r~AHsQG~~~~Ci~~~~VK~A~~~~~~iQi~~~CK~~iLR 297 (1179)
T KOG3648|consen 218 QYITKMTAIIFSDYRLICGFMDDCKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILR 297 (1179)
T ss_pred HHHHHHHHHHhccchhccchHHHHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHhhhhhcCchhhHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999542 588999999999
Q ss_pred HHHHcccchhhhHHHHHhcHHHHhccCCCCCCCcccHhhHHhhccCCccCcHHHHHHHHHHHHHhcchhhhcHHHHHHHH
Q psy8245 74 LSELQSDDIKLDRVLYVACANDRYRLCSDVPQGSGQIYKCLMDHTGDKLMSDKCREQLLRRQMLIASDYQVSKRLARACK 153 (629)
Q Consensus 74 ~~~~~~~D~~ld~~l~~aC~~D~~~~C~~v~~G~G~vl~CL~~hk~~~~~s~~C~~~L~~~~~~~~~Dyrl~~~l~~aC~ 153 (629)
+++++++||+||+.||+||+.|+++||.++++|+|+|++||+.||++..|+++|+++|+.|++++++|||++++|+++|+
T Consensus 298 ~AEm~sDDFHLDR~L~FACR~DRER~C~~~~sGEGrV~~CL~~~r~~~~M~~~C~~~L~~R~~L~~~DYr~s~~L~KsC~ 377 (1179)
T KOG3648|consen 298 VAELSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQKLIAQDYKVSYSLAKSCK 377 (1179)
T ss_pred HHHccccccccccchhhhccccHHHHhccCCCCCchhHHHHhcccchhhcCHHHHHHHHHHHHHHhhhhhhccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC-CcCcccccchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhccccCCHHHHhhcHHhHHhhccCCCC
Q psy8245 154 EDIRTHKCRR-LVSDDREIRLAQILVCLENAVHNGSKVSGECQAEMTSHRKMLLTDYRLSPEIVTRCSEDIVTYCRGLEA 232 (629)
Q Consensus 154 ~DI~~~~C~~-~~~~~~~~~~~~vl~CLe~~~~~~~~~s~~C~~ev~~~~~~~~~D~rldp~l~~~C~~Di~~~C~~~~~ 232 (629)
+|+++|+|.. +.+...++.++++|+|||+.+|++...|.+|++||.+||+|+|+|||++|||+..|+.+|+++|++++.
T Consensus 378 ~~L~rYrC~~~Ni~~s~~~~Ls~iLmCLE~~~Hr~~Q~S~EC~~EMi~~R~MmM~~F~msPEiiL~C~~EI~~~CS~i~~ 457 (1179)
T KOG3648|consen 378 SDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQGEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHR 457 (1179)
T ss_pred hHHHhhcCCcccCchhHHHHHHHHHHHhcCHhhcCCCCchhhhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcchhhc
Confidence 9999999998 445667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhHHHHhhhhcccCCChhhHHHHHHHHHhcccCCCcccCHHHHhhcHHHHHccCCCCCCCchhhHHHhhhccCC
Q psy8245 233 GGKTIHCLMEHARRNRKKERISPPCLRAVESLIKTADAGEDWRVDPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDN 312 (629)
Q Consensus 233 ~G~vi~CL~~~~r~~~~~~~ls~~C~~~l~~l~~~~d~~~D~~~D~~L~~aC~~di~~~C~~v~~G~~rv~~CL~~~~~~ 312 (629)
.|||+||||+.+|.+. ..|+..|+++|+++++++|+|.||++|++|+.+|++.|+..|+.+..|+..+++|||+|.++
T Consensus 458 ~GRTLHCLM~~~R~E~--~~LG~~C~QA~Q~~i~~~D~G~~YriDr~L~~sC~S~I~~~C~~~~~~~~~~LsCLM~~~~s 535 (1179)
T KOG3648|consen 458 KGRTLHCLMKVVRGEK--GNLGMNCQQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYT 535 (1179)
T ss_pred CCcchhhHHHHhhccc--ccchHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccccccCCcHHHHHHHHhcCC
Confidence 9999999999887554 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHhccCCCCHHHHHHhHHHHHhhchhhhhcc-cccCCCCCCccchhchhhhhhc-cccccccCC
Q psy8245 313 DVMTAPCESALIQIQYFIARDFELDPRLYRACYDEATRLCHAKKEWF-KVKDLEPNNGPLVLPCLYRYLY-HSETKWKLG 390 (629)
Q Consensus 313 ~~ms~~C~~~L~~~q~~~a~Dyrld~~L~kaCk~D~~~~C~~~~~~~-~~~~~~~~~~~~vl~CL~~~~~-~~~~~~~ls 390 (629)
++|.++|+++|+++||||||||+|||.||++|+.|+.++|++ .+|+ ++.-++. |+||+||||++| +++++++||
T Consensus 536 ~~MV~~CE~RLLE~QYF~sRDW~mDP~LY~~C~~~A~~~C~~-~~W~~s~~~~~~---G~V~sCLYR~AY~~~~~~~~LS 611 (1179)
T KOG3648|consen 536 EKMVEDCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHT-HGWNETSEFMPQ---GAVFSCLYRHAYRTEEQGRRLS 611 (1179)
T ss_pred chhhHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhh-cCcccccccCcc---chHHHHHHHHhhcchhhcCchh
Confidence 999999999999999999999999999999999999999998 6898 3444432 379999999999 777889999
Q ss_pred hhhHHHHHHHHHHhhhccCCChHHHHhhHHHHhhcCCCCCCCchhchHHhhhccCCcHHHHHHHHHHHhhhhccCccccc
Q psy8245 391 RSCGDEVRRVMRQRAESVRLLPEVEQACVDDLGMYCPERTGPGQEMDCLQERLPELKPDCAALVESLIKTADAGEDWRVD 470 (629)
Q Consensus 391 ~~C~~ev~~~~~~~~~d~~L~P~l~~~C~~Di~~~Cs~~~~~G~~l~CL~~~~~~Ls~~C~~av~~l~~~~~~~~d~~~d 470 (629)
.+|.+||+++++++|.|++|+|+|.+.|+.|+++|||+++.+|++++|||+|++++.++|+..|.++ |+++++|++++
T Consensus 612 ~~C~~~V~~iLH~RA~~V~L~P~i~D~C~~~L~~~CS~~~~~~~Em~CLQD~~~~~~~~C~~~~~~~--TEmEs~D~~i~ 689 (1179)
T KOG3648|consen 612 RECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECLQDHLDDLVVECRDIVGNL--TELESEDIQIE 689 (1179)
T ss_pred HHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcchHHHHHHhhh--hhhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhcHHHHHhhCC-----CCCCCchhhhhHhhhccCCCCCChhhHHHHHHHHHHHccCCCCCHHHHHHhHHHHHhhc
Q psy8245 471 PVLKEACQPVVDIACR-----GIRGGDARVMSCLMDNLDNDVMTAPCESALIQIQYFIARDFELDPRLYRACYDEATRLC 545 (629)
Q Consensus 471 ~~l~~aC~~~i~~~C~-----~v~~Gd~rvl~CL~~~~~~~~m~~~C~~~l~~~q~~~~rD~~ldp~l~~aC~~D~~~lC 545 (629)
.+|++||+|+|++||+ .|++|| +|+||++||++++|+++|+.+|+|||++++|||+|+|+|.+||++||.++|
T Consensus 690 ~~L~rAC~PiI~~~C~~~A~~~ID~GD--~mECLi~NK~~K~MN~KC~~~V~HF~Li~mrD~~FSYKF~~AC~~Di~~~C 767 (1179)
T KOG3648|consen 690 ALLMRACEPIIQNFCHDVADNQIDSGD--LMECLIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLC 767 (1179)
T ss_pred HHHHHhccHHHHHHHHHHhhccCccch--HHHHHHcCccHHHHHHHHhhccchheeeeehhhhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999 789999 999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhh----------------------------------------------------------ccCCCCCCcchhh
Q psy8245 546 HAKKEWFKV----------------------------------------------------------KDLEPNNGPLVLP 567 (629)
Q Consensus 546 ~~~~~~~~~----------------------------------------------------------~~~~~~~g~~vl~ 567 (629)
|+.+++.++ .+++.|+++ +|+
T Consensus 768 ~~~~~~~~~iI~~~s~VR~~~~~~~~~~~~s~~CrrQLrV~~L~~~~~~~~~P~L~~~C~~~IK~~~~~~~~~~~~-~IE 846 (1179)
T KOG3648|consen 768 PNIKKKVDVVICLSTTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYGNAQ-IIE 846 (1179)
T ss_pred cccccCcCeEEEehhhhhHHHHhccCcccccHHHHHHHHHHHHHhhHHHhcCchHHHHHHHHHHHHHHhhhhhHHH-HHH
Confidence 997655411 077888999 999
Q ss_pred hhhH-------------------hhhcccccchhhcccccc--------C---C---------CCCCchHHHHHHHHHHH
Q psy8245 568 CLYR-------------------YLYHSETKWKLGRSCGDE--------E---R---------LPELKPDCAALVGNFTS 608 (629)
Q Consensus 568 CL~~-------------------~~~~~~~~~~L~~~C~~~--------~---~---------l~~l~~~C~~~v~~~~~ 608 (629)
||.. |++|++.|++|++.|+.+ + + .+.++|+|+.+|++|++
T Consensus 847 CLr~N~~~L~~~C~~~iF~~~~~E~~D~~mD~~L~r~Cr~~I~rFC~~sDS~~~L~CL~~~K~~~Lm~~~CK~~i~~R~~ 926 (1179)
T KOG3648|consen 847 CLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTMLQCLKQNKNSELMDPKCKQMITKRQI 926 (1179)
T ss_pred HHHHhHHhcChHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhccchHHhhcHHHHHHHHHHHH
Confidence 9988 888999999999999999 1 2 27889999999999999
Q ss_pred hhhhccccCHHHHHhccccCC
Q psy8245 609 AQVQDVRLNPLIMKYCGHVIH 629 (629)
Q Consensus 609 ~~~~d~~lnp~L~~aC~~~i~ 629 (629)
++++||||||.|.++|+.+|+
T Consensus 927 ~~~~D~RL~P~L~~sCr~~~~ 947 (1179)
T KOG3648|consen 927 TQNTDYRLNPMLRKACKADIP 947 (1179)
T ss_pred hhcccceeCHHHHHHHHhhHH
Confidence 999999999999999999874
No 2
>KOG3648|consensus
Probab=100.00 E-value=1.2e-108 Score=881.44 Aligned_cols=541 Identities=28% Similarity=0.591 Sum_probs=489.0
Q ss_pred HhcccccccHHHHHHHHHHHHhccCCCCCCCCCccCCchhHHHHHHHh---hccCChhhHHHHHHHHHHcccchhhhHHH
Q psy8245 12 IAFSDFRLISQFTDVCKTFVQKFTCGRVETDKSTKFSQGKTLECLQMH---IDKLDGDCRHQVLRLSELQSDDIKLDRVL 88 (629)
Q Consensus 12 ~~f~D~rli~~~~~~C~~Di~~~~C~~v~~g~~~~~sqg~vleCLq~~---~~~Ls~~C~~~i~~~~~~~~~D~~ld~~l 88 (629)
.+..||.|... ++|+.||.++ |++++ +.++..||||||+- ...||.+|.|.+|+++.+++.|.+|.+.+
T Consensus 105 ~~~~~~KLA~~--~sCr~Di~r~-CP~~~-----~s~~msiLECLQD~~~~E~~iS~~C~~L~W~~K~~iT~D~rF~S~A 176 (1179)
T KOG3648|consen 105 GAGGGWKLAEE--ESCREDVTRV-CPKHT-----WSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVA 176 (1179)
T ss_pred CCCCCccccch--hhHHHhHHhh-CCCcc-----cccchHHHHHHHhcCCChhhHHHHHHHHHHHhccccccChhHHHHH
Confidence 34678888776 9999999999 98776 45689999999993 34699999999999999999999999999
Q ss_pred HHhcHHHHhc--cCCCCCCCcccHhhHHhhccCCccCcHHHHHHHHHHHHHhcchhhhcHHHHHHHHHHHHhcccCCCcC
Q psy8245 89 YVACANDRYR--LCSDVPQGSGQIYKCLMDHTGDKLMSDKCREQLLRRQMLIASDYQVSKRLARACKEDIRTHKCRRLVS 166 (629)
Q Consensus 89 ~~aC~~D~~~--~C~~v~~G~G~vl~CL~~hk~~~~~s~~C~~~L~~~~~~~~~Dyrl~~~l~~aC~~DI~~~~C~~~~~ 166 (629)
..+|.+.+.. -|.+.+.|.|++++||++|+.+.+ ..+|+++|++++.++|+||||+.+|+..|+.+|.+|+|+....
T Consensus 177 r~~C~~~i~~~~~~~~~~~~~G~~~SCL~~~~~NiT-E~~CH~~i~r~~~i~FSD~RLi~~F~~~Cr~~i~~~KC~~i~~ 255 (1179)
T KOG3648|consen 177 REVCKSTITEIKECADEPVGKGYMVSCLVDHRGNIT-EYQCHQYITKMTAIIFSDYRLICGFMDDCKNDINILKCGSIRL 255 (1179)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhhhhHHHhhcCcc-HHHHHHHHHHHHHHHhccchhccchHHHHHHHHHHHhcCcccc
Confidence 9999998754 377889999999999999998765 5699999999999999999999999999999999999998554
Q ss_pred cc-cccchhHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhccccCCHHHHhhcHHhHHhhccCCCCCchHHHHhHHHHh
Q psy8245 167 DD-REIRLAQILVCLENAVHNGSKVSGECQAEMTSHRKMLLTDYRLSPEIVTRCSEDIVTYCRGLEAGGKTIHCLMEHAR 245 (629)
Q Consensus 167 ~~-~~~~~~~vl~CLe~~~~~~~~~s~~C~~ev~~~~~~~~~D~rldp~l~~~C~~Di~~~C~~~~~~G~vi~CL~~~~r 245 (629)
+. ..+++|.+|+||++.+.++.+
T Consensus 256 G~r~AHsQG~~~~Ci~~~~VK~A~-------------------------------------------------------- 279 (1179)
T KOG3648|consen 256 GEKDAHSQGEVVSCLEKGLVKEAE-------------------------------------------------------- 279 (1179)
T ss_pred cchhhhcchhHHHHHHHHHHhhhh--------------------------------------------------------
Confidence 33 346899999999986644321
Q ss_pred hhhcccCCChhhHHHHHHHHHhcccCCCcccCHHHHhhcHHHHHccCCCCCCCchhhHHHhhhccCCCCCCHHhHHHHHH
Q psy8245 246 RNRKKERISPPCLRAVESLIKTADAGEDWRVDPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDNDVMTAPCESALIQ 325 (629)
Q Consensus 246 ~~~~~~~ls~~C~~~l~~l~~~~d~~~D~~~D~~L~~aC~~di~~~C~~v~~G~~rv~~CL~~~~~~~~ms~~C~~~L~~ 325 (629)
.+.++-++++.|+++|.+++++ +++|||+|++||+||+.|+++||++++.|+|+|++|||.|++++.|+++|+.+|.+
T Consensus 280 ~~~~~iQi~~~CK~~iLR~AEm--~sDDFHLDR~L~FACR~DRER~C~~~~sGEGrV~~CL~~~r~~~~M~~~C~~~L~~ 357 (1179)
T KOG3648|consen 280 EREPKIQVSELCKKAILRVAEL--SSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTT 357 (1179)
T ss_pred hcCchhhHHHHHHHHHHHHHHc--cccccccccchhhhccccHHHHhccCCCCCchhHHHHhcccchhhcCHHHHHHHHH
Confidence 1223357889999999999987 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHhHHHHHhh-chhhhhcccccCCCCCCccchhchhhhhhccccccccCChhhHHHHHHHHHHh
Q psy8245 326 IQYFIARDFELDPRLYRACYDEATRL-CHAKKEWFKVKDLEPNNGPLVLPCLYRYLYHSETKWKLGRSCGDEVRRVMRQR 404 (629)
Q Consensus 326 ~q~~~a~Dyrld~~L~kaCk~D~~~~-C~~~~~~~~~~~~~~~~~~~vl~CL~~~~~~~~~~~~ls~~C~~ev~~~~~~~ 404 (629)
|+|+|+||||++|+|.|+|+.|+.+| |... +. +...+.+++|||+||++..| ++.++|.+|+.||..|++|.
T Consensus 358 R~~L~~~DYr~s~~L~KsC~~~L~rYrC~~~-Ni---~~s~~~~Ls~iLmCLE~~~H---r~~Q~S~EC~~EMi~~R~Mm 430 (1179)
T KOG3648|consen 358 RQKLIAQDYKVSYSLAKSCKSDLKKYRCNVE-NL---PRSREARLSYLLMCLESAVH---RGRQVSSECQGEMLDYRRML 430 (1179)
T ss_pred HHHHHhhhhhhccchhhhhhhHHHhhcCCcc-cC---chhHHHHHHHHHHHhcCHhh---cCCCCchhhhHHHHHHHHHH
Confidence 99999999999999999999999999 9873 22 22234679999999999877 67899999999999999999
Q ss_pred hhccCCChHHHHhhHHHHhhcCCCCCCCchhchHHhhhcc----CCcHHHHHHHHHHHhhhhccCcccccHHHHhhcHHH
Q psy8245 405 AESVRLLPEVEQACVDDLGMYCPERTGPGQEMDCLQERLP----ELKPDCAALVESLIKTADAGEDWRVDPVLKEACQPV 480 (629)
Q Consensus 405 ~~d~~L~P~l~~~C~~Di~~~Cs~~~~~G~~l~CL~~~~~----~Ls~~C~~av~~l~~~~~~~~d~~~d~~l~~aC~~~ 480 (629)
|+||+++|||+.+|+.+|++|||+...+|+++|||++..+ +|..+|++||.++||++++|.||++|.+|+.+|.++
T Consensus 431 M~~F~msPEiiL~C~~EI~~~CS~i~~~GRTLHCLM~~~R~E~~~LG~~C~QA~Q~~i~~~D~G~~YriDr~L~~sC~S~ 510 (1179)
T KOG3648|consen 431 MEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNCQQALQTLIQETDPGADYRIDRALNEACESV 510 (1179)
T ss_pred HHHhccCHHHHHHHHHHHHhhcchhhcCCcchhhHHHHhhcccccchHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998544 688999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCchhhhhHhhhccCCCCCChhhHHHHHHHHHHHccCCCCCHHHHHHhHHHHHhhchhccchhhhccCCCC
Q psy8245 481 VDIACRGIRGGDARVMSCLMDNLDNDVMTAPCESALIQIQYFIARDFELDPRLYRACYDEATRLCHAKKEWFKVKDLEPN 560 (629)
Q Consensus 481 i~~~C~~v~~Gd~rvl~CL~~~~~~~~m~~~C~~~l~~~q~~~~rD~~ldp~l~~aC~~D~~~lC~~~~~~~~~~~~~~~ 560 (629)
|++.|+++..|++++|+|||+|.++++|.++|+..|+++|||++|||++||+||++|+.|++++|++. +||.+.+. ++
T Consensus 511 I~~~C~~~~~~~~~~LsCLM~~~~s~~MV~~CE~RLLE~QYF~sRDW~mDP~LY~~C~~~A~~~C~~~-~W~~s~~~-~~ 588 (1179)
T KOG3648|consen 511 IQTACKHIRSGDPMILSCLMEHLYTEKMVEDCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTH-GWNETSEF-MP 588 (1179)
T ss_pred HhccccccccCCcHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhc-Cccccccc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 69965543 45
Q ss_pred CCcchhhhhhHhhh-cccccchhhcccccc--------------------------------------------CCCCCC
Q psy8245 561 NGPLVLPCLYRYLY-HSETKWKLGRSCGDE--------------------------------------------ERLPEL 595 (629)
Q Consensus 561 ~g~~vl~CL~~~~~-~~~~~~~L~~~C~~~--------------------------------------------~~l~~l 595 (629)
.|+ ||+||||+|| ..+...+|+..|+.+ ++|+++
T Consensus 589 ~G~-V~sCLYR~AY~~~~~~~~LS~~C~~~V~~iLH~RA~~V~L~P~i~D~C~~~L~~~CS~~~~~~~Em~CLQD~~~~~ 667 (1179)
T KOG3648|consen 589 QGA-VFSCLYRHAYRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECLQDHLDDL 667 (1179)
T ss_pred cch-HHHHHHHHhhcchhhcCchhHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhc
Confidence 778 9999999998 445667888888887 266889
Q ss_pred chHHHHHHHHHHHhhhhccccCHHHHHhccccCC
Q psy8245 596 KPDCAALVGNFTSAQVQDVRLNPLIMKYCGHVIH 629 (629)
Q Consensus 596 ~~~C~~~v~~~~~~~~~d~~lnp~L~~aC~~~i~ 629 (629)
.++|+.+|+|+|+++++|++||..|++||+|+|+
T Consensus 668 ~~~C~~~~~~~TEmEs~D~~i~~~L~rAC~PiI~ 701 (1179)
T KOG3648|consen 668 VVECRDIVGNLTELESEDIQIEALLMRACEPIIQ 701 (1179)
T ss_pred chHHHHHHhhhhhhhhhhhHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999999984
No 3
>PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines. It is found in multiple copies in metazoan proteins, single copies occur in some bacterial species and is absent from the fungi. The Golgi apparatus protein 1 (GLG1,Q9Z1E9 from SWISSPROT), which is located in Golgi cisterns of various cell types, can bind fibroblast growth factor and E-selectin. Sixteen cysteine-rich GLG1 repeats form the core of the protein and are located in the lumen. The C-terminal part of GLG1 is composed of a transmembrane region and a short cytoplasmic tail. The Cys-rich GLG1 repeat is a ~60 amino acid module that contains 4 Cys residues, which can form intrachain disulphide bridges []. Homologues of the vertebrate GLG1/Golgi sialoglycoprotein MG-160 (Mg160)/E-selectin ligand 1 (ESL1)/cysteine-rich fibroblast growth factor receptor 1 (CFR1)/latent transforming growth factor-beta complex protein 1 (LTCP-1) have been found in insects and the nematode Caenorhabditis elegans [].; GO: 0016020 membrane
Probab=99.22 E-value=9.6e-12 Score=99.45 Aligned_cols=57 Identities=37% Similarity=0.714 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHhcccCCCcccCHHHHhhcHHHHHccCCCCCCCchhhHHHhhhccCCC
Q psy8245 255 PPCLRAVESLIKTADAGEDWRVDPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDND 313 (629)
Q Consensus 255 ~~C~~~l~~l~~~~d~~~D~~~D~~L~~aC~~di~~~C~~v~~G~~rv~~CL~~~~~~~ 313 (629)
|+|+.+|.++... .+.||++||.|++||++||.+||+++.+|+|+|++||++|+++.
T Consensus 1 ~~C~~~v~~~~~~--~~~D~~ld~~L~~aC~~di~~~C~~~~~~~g~vl~CL~~~~~~~ 57 (58)
T PF00839_consen 1 PECRHAVFKRQEE--AAEDYRLDPPLQKACKSDIDKFCSDVEPGHGRVLECLKEHKDDL 57 (58)
T ss_pred ChHHHHHHHHHHH--HHhChhcCHHHHHHhHHHHHhhCcCCCCCchHHHHHHHHHHHcc
Confidence 5799999988554 58999999999999999999999999999999999999999753
No 4
>PF00839 Cys_rich_FGFR: Cysteine rich repeat; InterPro: IPR001893 This cysteine rich repeat contains four cysteines. It is found in multiple copies in metazoan proteins, single copies occur in some bacterial species and is absent from the fungi. The Golgi apparatus protein 1 (GLG1,Q9Z1E9 from SWISSPROT), which is located in Golgi cisterns of various cell types, can bind fibroblast growth factor and E-selectin. Sixteen cysteine-rich GLG1 repeats form the core of the protein and are located in the lumen. The C-terminal part of GLG1 is composed of a transmembrane region and a short cytoplasmic tail. The Cys-rich GLG1 repeat is a ~60 amino acid module that contains 4 Cys residues, which can form intrachain disulphide bridges []. Homologues of the vertebrate GLG1/Golgi sialoglycoprotein MG-160 (Mg160)/E-selectin ligand 1 (ESL1)/cysteine-rich fibroblast growth factor receptor 1 (CFR1)/latent transforming growth factor-beta complex protein 1 (LTCP-1) have been found in insects and the nematode Caenorhabditis elegans [].; GO: 0016020 membrane
Probab=99.13 E-value=4.9e-11 Score=95.36 Aligned_cols=57 Identities=35% Similarity=0.733 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhccCcccccHHHHhhcHHHHHhhCCCCCCCchhhhhHhhhccCCC
Q psy8245 448 PDCAALVESLIKTADAGEDWRVDPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDND 506 (629)
Q Consensus 448 ~~C~~av~~l~~~~~~~~d~~~d~~l~~aC~~~i~~~C~~v~~Gd~rvl~CL~~~~~~~ 506 (629)
|+|+.+|..+ +...+.||++||.|++||+++|.++|+++.+|.|+||+||++|++++
T Consensus 1 ~~C~~~v~~~--~~~~~~D~~ld~~L~~aC~~di~~~C~~~~~~~g~vl~CL~~~~~~~ 57 (58)
T PF00839_consen 1 PECRHAVFKR--QEEAAEDYRLDPPLQKACKSDIDKFCSDVEPGHGRVLECLKEHKDDL 57 (58)
T ss_pred ChHHHHHHHH--HHHHHhChhcCHHHHHHhHHHHHhhCcCCCCCchHHHHHHHHHHHcc
Confidence 5899999999 88999999999999999999999999999999999999999998763
No 5
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=19.97 E-value=39 Score=29.16 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.9
Q ss_pred HHHhcccccccHHHHHHHHHHHHhccC
Q psy8245 10 EWIAFSDFRLISQFTDVCKTFVQKFTC 36 (629)
Q Consensus 10 ~~~~f~D~rli~~~~~~C~~Di~~~~C 36 (629)
+++++--||..+-+++.|++||..+ |
T Consensus 59 eqlv~LRFRAL~YLaDecgEDi~~Y-c 84 (84)
T PF06967_consen 59 EQLVGLRFRALCYLADECGEDISQY-C 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhcc-C
Confidence 5677778999999999999999988 5
No 6
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=9.67 E-value=2.4e+02 Score=19.54 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=18.5
Q ss_pred hhhHhhhccCCCCCChhhHHHHHHHH
Q psy8245 495 VMSCLMDNLDNDVMTAPCESALIQIQ 520 (629)
Q Consensus 495 vl~CL~~~~~~~~m~~~C~~~l~~~q 520 (629)
.|.||.+|.++ ..+|+..+..|+
T Consensus 8 ~~~Cl~~n~~~---~~~C~~~~~~~~ 30 (35)
T PF06747_consen 8 YLACLKENNFD---WSKCRKEFKAYK 30 (35)
T ss_dssp HHHHHHCH-SS---TCCCHHHHHHHH
T ss_pred HHHHHHHCCCc---HHhhHHHHHHHH
Confidence 78999999774 778999888765
No 7
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=8.98 E-value=1.8e+02 Score=25.28 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=22.7
Q ss_pred HHHHhcchhhhcHHHHHHHHHHHHhccc
Q psy8245 134 RQMLIASDYQVSKRLARACKEDIRTHKC 161 (629)
Q Consensus 134 ~~~~~~~Dyrl~~~l~~aC~~DI~~~~C 161 (629)
.+++++-=||.-.-|+..|++||..| |
T Consensus 58 Yeqlv~LRFRAL~YLaDecgEDi~~Y-c 84 (84)
T PF06967_consen 58 YEQLVGLRFRALCYLADECGEDISQY-C 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcc-C
Confidence 55677777888888999999999998 5
No 8
>KOG4743|consensus
Probab=7.58 E-value=3.1e+02 Score=27.54 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=36.1
Q ss_pred chhhHHHhhhccCCCCCCHHhHHHHHHHHHHHhccCCCCHH
Q psy8245 299 DARVMSCLMDNLDNDVMTAPCESALIQIQYFIARDFELDPR 339 (629)
Q Consensus 299 ~~rv~~CL~~~~~~~~ms~~C~~~L~~~q~~~a~Dyrld~~ 339 (629)
..++-.||+--.+.+++|-++..+|.+.+..-.+-|.+|.+
T Consensus 15 ~~sAcR~LFGpvd~EElSR~l~s~l~~m~~e~~~KWnFDFq 55 (195)
T KOG4743|consen 15 KSSACRCLFGPVDHEELSRDLNSRLERMNEEDQQKWNFDFQ 55 (195)
T ss_pred cchHHHHhcCCCCHHHHhHHHHHHHHHHHHHHHhccCcccc
Confidence 66788999999999999999999999999998888877554
No 9
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=6.96 E-value=3.8e+02 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=17.8
Q ss_pred hhhhHhhhccCCCCCChhhHHHHHH
Q psy8245 494 RVMSCLMDNLDNDVMTAPCESALIQ 518 (629)
Q Consensus 494 rvl~CL~~~~~~~~m~~~C~~~l~~ 518 (629)
+|..||..|.++ ...|...|..
T Consensus 10 ~iq~CL~~N~Yd---~~kC~~~i~~ 31 (67)
T PF08991_consen 10 AIQKCLQRNNYD---ESKCQDYIDA 31 (67)
T ss_dssp HHHHHHHHTTT----CCCTHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHH
Confidence 488999999886 6689998886
No 10
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=6.75 E-value=3.8e+02 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=20.1
Q ss_pred hhHHHHHHHhhccCChhhHHHHHHH
Q psy8245 50 GKTLECLQMHIDKLDGDCRHQVLRL 74 (629)
Q Consensus 50 g~vleCLq~~~~~Ls~~C~~~i~~~ 74 (629)
...-+||.++...|+.+|++....+
T Consensus 27 ~t~~~Cl~~~~~~~p~eC~~lr~~f 51 (68)
T PF10203_consen 27 RTPKDCLKDPSDELPEECQQLRKAF 51 (68)
T ss_pred CCHHHHHcCCCCcCCHHHHHHHHHH
Confidence 4567899998888999999887444
Done!