Query psy8245
Match_columns 629
No_of_seqs 272 out of 303
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:26:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a6s_A GAG polyprotein; core p 6.0 4.4E+02 0.015 21.6 3.3 32 144-182 4-35 (87)
2 3j21_a 50S ribosomal protein L 5.4 3.2E+02 0.011 23.1 2.3 30 508-537 24-58 (95)
3 3iz5_g 60S ribosomal protein L 4.6 4.2E+02 0.014 23.5 2.6 30 508-537 33-67 (123)
4 1hp8_A HU-P8; leukemia, cystei 4.4 5.3E+02 0.018 20.5 2.8 23 109-134 13-35 (68)
5 4a17_W RPL31, 60S ribosomal pr 4.2 3.5E+02 0.012 23.5 1.8 30 508-537 24-58 (111)
6 1vq8_X 50S ribosomal protein L 4.0 3.6E+02 0.012 22.6 1.7 17 607-623 42-58 (92)
7 2zkr_x 60S ribosomal protein L 3.8 5.8E+02 0.02 22.6 2.9 29 508-536 38-71 (125)
8 1ei0_A P8MTCP1; helix-turn-hel 3.7 7.4E+02 0.025 17.1 2.8 23 494-519 9-31 (38)
9 3u5e_d L34, YL28, 60S ribosoma 3.4 7.2E+02 0.025 21.6 3.1 30 508-537 25-59 (113)
10 2dwf_A Pulmonary surfactant-as 2.9 7.4E+02 0.025 16.9 2.0 22 512-533 4-25 (34)
No 1
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=5.98 E-value=4.4e+02 Score=21.57 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=20.4
Q ss_pred hcHHHHHHHHHHHHhcccCCCcCcccccchhHHHHHHHH
Q psy8245 144 VSKRLARACKEDIRTHKCRRLVSDDREIRLAQILVCLEN 182 (629)
Q Consensus 144 l~~~l~~aC~~DI~~~~C~~~~~~~~~~~~~~vl~CLe~ 182 (629)
++..+..+|+. +||...|..+++ |.+|+=|++
T Consensus 4 vikv~~~ack~-----~cgk~spskKeI--~a~LslL~k 35 (87)
T 1a6s_A 4 VIKVISSACKT-----YCGKTSPSKKEI--GAMLSLLQK 35 (87)
T ss_dssp HHHHHHHHHHH-----HHTTTSSCSSHH--HHHHHTGGG
T ss_pred HHHHHHHHHHH-----HcCCCCCcHHHH--HHHHHHHHH
Confidence 45567888986 499876654544 555555543
No 2
>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=5.38 E-value=3.2e+02 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.4
Q ss_pred CChhhHHHHHHHHHHHcc-----CCCCCHHHHHHh
Q psy8245 508 MTAPCESALIQIQYFIAR-----DFELDPRLYRAC 537 (629)
Q Consensus 508 m~~~C~~~l~~~q~~~~r-----D~~ldp~l~~aC 537 (629)
+...--.||..++-|.++ |-++||.|.++=
T Consensus 24 fkKrAprAlkeIrkFa~K~mgt~dV~ID~~LNk~v 58 (95)
T 3j21_a 24 RWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKI 58 (95)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTCSSCEECHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCcEEEChHHHHHH
Confidence 344566789999999888 999999998874
No 3
>3iz5_g 60S ribosomal protein L31 (L31E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_g 2go5_6 2j37_6
Probab=4.63 E-value=4.2e+02 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.2
Q ss_pred CChhhHHHHHHHHHHHcc-----CCCCCHHHHHHh
Q psy8245 508 MTAPCESALIQIQYFIAR-----DFELDPRLYRAC 537 (629)
Q Consensus 508 m~~~C~~~l~~~q~~~~r-----D~~ldp~l~~aC 537 (629)
+...--.||..++-|.++ |-++|+.|.++-
T Consensus 33 fkKRAprAlKeIrkFa~K~Mgt~dVrID~~LNkaV 67 (123)
T 3iz5_g 33 FKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAI 67 (123)
T ss_dssp TTTCHHHHHHHHHHHHHHHHTCSCBCCCHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHcCCCceEECcHHHHHH
Confidence 444566789999999887 999999998764
No 4
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=4.42 E-value=5.3e+02 Score=20.45 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=17.7
Q ss_pred cHhhHHhhccCCccCcHHHHHHHHHH
Q psy8245 109 QIYKCLMDHTGDKLMSDKCREQLLRR 134 (629)
Q Consensus 109 ~vl~CL~~hk~~~~~s~~C~~~L~~~ 134 (629)
.+..||.+|..+. .+|+.+|..+
T Consensus 13 aiQ~CL~~N~yd~---skCq~~id~L 35 (68)
T 1hp8_A 13 EIQKCLQANSYME---SKCQAVIQEL 35 (68)
T ss_dssp HHHHHHHHTTTCH---HHHHHHHHHH
T ss_pred HHHHHHHHcCCcH---HHHHHHHHHH
Confidence 4788999998653 6899998653
No 5
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=4.22 E-value=3.5e+02 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.3
Q ss_pred CChhhHHHHHHHHHHHcc-----CCCCCHHHHHHh
Q psy8245 508 MTAPCESALIQIQYFIAR-----DFELDPRLYRAC 537 (629)
Q Consensus 508 m~~~C~~~l~~~q~~~~r-----D~~ldp~l~~aC 537 (629)
+...--.||.+++-|+++ |-++||.|.+|-
T Consensus 24 fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~v 58 (111)
T 4a17_W 24 FKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFI 58 (111)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHcCCCceEECcHHHHHH
Confidence 444567789999999887 999999997764
No 6
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=4.03 E-value=3.6e+02 Score=22.64 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=12.2
Q ss_pred HHhhhhccccCHHHHHh
Q psy8245 607 TSAQVQDVRLNPLIMKY 623 (629)
Q Consensus 607 ~~~~~~d~~lnp~L~~a 623 (629)
|.....|++|+|.|.++
T Consensus 42 m~t~~~dVriD~~LNk~ 58 (92)
T 1vq8_X 42 FSVDEDAVRLDPSINEA 58 (92)
T ss_dssp TTCCGGGEEECHHHHHH
T ss_pred hCCCcccEEECcHHHHH
Confidence 33333499999999875
No 7
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=3.83 E-value=5.8e+02 Score=22.60 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=22.9
Q ss_pred CChhhHHHHHHHHHHHcc-----CCCCCHHHHHH
Q psy8245 508 MTAPCESALIQIQYFIAR-----DFELDPRLYRA 536 (629)
Q Consensus 508 m~~~C~~~l~~~q~~~~r-----D~~ldp~l~~a 536 (629)
+...--.||..++-|.++ |.++||.|.++
T Consensus 38 fkKRAprAik~IrkFa~K~Mgt~dVrID~~LNk~ 71 (125)
T 2zkr_x 38 FKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA 71 (125)
T ss_dssp SSBHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcEEECHHHHHH
Confidence 445566788888888777 99999999865
No 8
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=3.69 E-value=7.4e+02 Score=17.11 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=17.8
Q ss_pred hhhhHhhhccCCCCCChhhHHHHHHH
Q psy8245 494 RVMSCLMDNLDNDVMTAPCESALIQI 519 (629)
Q Consensus 494 rvl~CL~~~~~~~~m~~~C~~~l~~~ 519 (629)
.+..||..|.+. ..+|+..|..+
T Consensus 9 a~q~CL~~n~~d---~skCq~~id~l 31 (38)
T 1ei0_A 9 EIQKCLQANSYL---ESKCQAVIQEL 31 (38)
T ss_dssp HHHHHHHHTTTC---GGGTHHHHHHH
T ss_pred HHHHHHHHCCCc---HHHHHHHHHHH
Confidence 377899998775 66899888754
No 9
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=3.44 E-value=7.2e+02 Score=21.61 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.6
Q ss_pred CChhhHHHHHHHHHHHcc-----CCCCCHHHHHHh
Q psy8245 508 MTAPCESALIQIQYFIAR-----DFELDPRLYRAC 537 (629)
Q Consensus 508 m~~~C~~~l~~~q~~~~r-----D~~ldp~l~~aC 537 (629)
+...--.||.+++-|.+| |-++||.|.++-
T Consensus 25 fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~v 59 (113)
T 3u5e_d 25 FKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAI 59 (113)
T ss_dssp TTTHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHcCCCceEECcHHHHHH
Confidence 455667799999999887 999999997764
No 10
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=2.90 E-value=7.4e+02 Score=16.87 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHccCCCCCHHH
Q psy8245 512 CESALIQIQYFIARDFELDPRL 533 (629)
Q Consensus 512 C~~~l~~~q~~~~rD~~ldp~l 533 (629)
|+.-|.++|..+-+-=|+-|+|
T Consensus 4 Crtlikriq~vIPk~~r~lPQL 25 (34)
T 2dwf_A 4 CRALIKRIQAMIPKGGRMLPQL 25 (34)
T ss_dssp HHHHHHHHHHHCTTCCSCCSHH
T ss_pred HHHHHHHHHhhcCCcccchHHH
Confidence 7888888888888887777776
Done!