Query psy8245
Match_columns 629
No_of_seqs 272 out of 303
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 22:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8245.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8245hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 5.6 1.8E+02 0.013 21.4 2.7 22 494-518 13-34 (68)
2 d2fp1a1 a.130.1.4 (A:35-199) S 5.5 3.4E+02 0.024 22.8 5.1 114 313-431 32-164 (165)
3 d2daha1 a.5.2.1 (A:8-48) Ubiqu 5.3 1.1E+02 0.0077 20.3 1.1 30 3-32 3-32 (41)
4 d2bwba1 a.5.2.1 (A:328-371) DS 5.2 1.1E+02 0.0077 20.7 1.1 30 3-32 6-35 (44)
5 d1bdsa_ g.9.1.1 (A:) BDs-I def 4.7 1.2E+02 0.0086 19.5 0.9 11 424-434 4-14 (43)
6 d1a6sa_ a.61.1.4 (A:) GAG poly 3.9 3.3E+02 0.024 20.5 3.3 32 144-182 4-35 (87)
7 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 3.9 1.4E+02 0.0099 20.7 0.8 30 3-32 9-38 (50)
8 d1veja1 a.5.2.1 (A:8-68) 49314 3.5 1.5E+02 0.011 21.3 0.8 30 3-32 23-52 (61)
9 d2db7a1 a.273.1.1 (A:3-57) Hai 3.0 2.5E+02 0.018 19.6 1.6 12 391-402 18-29 (55)
10 d3bz6a1 a.4.5.75 (A:13-96) Hyp 2.5 2.3E+02 0.017 21.5 0.8 16 489-504 8-23 (84)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=1.8e+02 Score=21.35 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=18.6
Q ss_pred hhhhHhhhccCCCCCChhhHHHHHH
Q psy8245 494 RVMSCLMDNLDNDVMTAPCESALIQ 518 (629)
Q Consensus 494 rvl~CL~~~~~~~~m~~~C~~~l~~ 518 (629)
+|-.||..|.+. ..+|...|..
T Consensus 13 ~IQ~CLq~N~Y~---EskC~~~i~~ 34 (68)
T d2hp8a_ 13 EIQKCLQANSYM---ESKCQAVIQE 34 (68)
T ss_dssp HHHHHHHHTTTC---TTTTHHHHHH
T ss_pred HHHHHHHHCCCC---HHHHHHHHHH
Confidence 477899999885 7799999986
No 2
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.48 E-value=3.4e+02 Score=22.79 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCCHHhHHHHHHHHHHHhccCCCCHHHHHHhHHHHHhhchh-----hhhccccc-CCCCCC--c-----------cchh
Q psy8245 313 DVMTAPCESALIQIQYFIARDFELDPRLYRACYDEATRLCHA-----KKEWFKVK-DLEPNN--G-----------PLVL 373 (629)
Q Consensus 313 ~~ms~~C~~~L~~~q~~~a~Dyrld~~L~kaCk~D~~~~C~~-----~~~~~~~~-~~~~~~--~-----------~~vl 373 (629)
+-+.++=++.+.+.-...+.++-||+...+.=-.++...-.. ...|.... ..++.+ + ..||
T Consensus 32 pI~Dp~RE~~Vl~~~~~~A~~~gLd~~~v~~~f~~~I~aSk~iQ~~~~a~W~~~~~~~~~~~~~l~~~Rp~l~~l~~~il 111 (165)
T d2fp1a1 32 PIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRML 111 (165)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCSSCCCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777776665544444433221 13453111 111111 1 1133
Q ss_pred chhhhhhccccccccCChhhHHHHHHHHHHhhhccCCChHHHHhhHHHHhhcCCCCCC
Q psy8245 374 PCLYRYLYHSETKWKLGRSCGDEVRRVMRQRAESVRLLPEVEQACVDDLGMYCPERTG 431 (629)
Q Consensus 374 ~CL~~~~~~~~~~~~ls~~C~~ev~~~~~~~~~d~~L~P~l~~~C~~Di~~~Cs~~~~ 431 (629)
.=|... ..-.-++.|..++..-..+-+.-++|||.=..+=..-+..+|+.+++
T Consensus 112 ~~l~~~-----~~~~~~~~C~~~l~~a~~~~~~~~~ld~~~~~aL~~Al~~~C~~~~~ 164 (165)
T d2fp1a1 112 SQIWSH-----WSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQALPP 164 (165)
T ss_dssp HHHHHT-----HHHHTSTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTSSCCCCC
T ss_pred HHHHHh-----hhccCCCccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcccCC
Confidence 333221 22356889999999988888889999998888888889999987654
No 3
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.31 E-value=1.1e+02 Score=20.33 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy8245 3 STQANLVEWIAFSDFRLISQFTDVCKTFVQ 32 (629)
Q Consensus 3 ~~~~~~~~~~~f~D~rli~~~~~~C~~Di~ 32 (629)
+++|..+..+.|.|....-.-....+-||+
T Consensus 3 ~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~ 32 (41)
T d2daha1 3 QVQLEQLRSMGFLNREANLQALIATGGDVD 32 (41)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCHH
Confidence 468899999999997766655555555554
No 4
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.20 E-value=1.1e+02 Score=20.67 Aligned_cols=30 Identities=20% Similarity=0.061 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy8245 3 STQANLVEWIAFSDFRLISQFTDVCKTFVQ 32 (629)
Q Consensus 3 ~~~~~~~~~~~f~D~rli~~~~~~C~~Di~ 32 (629)
+++|..+..+.|.|....-.-..+++-||+
T Consensus 6 ~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~ 35 (44)
T d2bwba1 6 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQ 35 (44)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHH
Confidence 578999999999997766666666665554
No 5
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.65 E-value=1.2e+02 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=8.3
Q ss_pred hcCCCCCCCch
Q psy8245 424 MYCPERTGPGQ 434 (629)
Q Consensus 424 ~~Cs~~~~~G~ 434 (629)
-|||++++.|.
T Consensus 4 cfcsgkpgrgd 14 (43)
T d1bdsa_ 4 CFCSGKPGRGD 14 (43)
T ss_dssp CCCSSCCSCCE
T ss_pred ccccCCCCCCc
Confidence 48999887764
No 6
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=3.93 E-value=3.3e+02 Score=20.54 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=20.6
Q ss_pred hcHHHHHHHHHHHHhcccCCCcCcccccchhHHHHHHHH
Q psy8245 144 VSKRLARACKEDIRTHKCRRLVSDDREIRLAQILVCLEN 182 (629)
Q Consensus 144 l~~~l~~aC~~DI~~~~C~~~~~~~~~~~~~~vl~CLe~ 182 (629)
+...+..+|+. +||...|..+++ +.+|+=|+.
T Consensus 4 VikVl~~~ck~-----~~gk~spskKei--~a~ls~L~~ 35 (87)
T d1a6sa_ 4 VIKVISSACKT-----YCGKTSPSKKEI--GAMLSLLQK 35 (87)
T ss_dssp HHHHHHHHHHH-----HHTTTSSCSSHH--HHHHHTGGG
T ss_pred HHHHHHHHHHH-----HcCCCCCcHHHH--HHHHHHHHH
Confidence 34567888887 488866655544 666665554
No 7
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.85 E-value=1.4e+02 Score=20.68 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy8245 3 STQANLVEWIAFSDFRLISQFTDVCKTFVQ 32 (629)
Q Consensus 3 ~~~~~~~~~~~f~D~rli~~~~~~C~~Di~ 32 (629)
+.+|..+..+.|.|....-.-..+++-||+
T Consensus 9 ~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~ 38 (50)
T d2dnaa1 9 SKEMECLQAMGFVNYNANLQALIATDGDTN 38 (50)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCHH
Confidence 468899999999996665555555554443
No 8
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.55 E-value=1.5e+02 Score=21.32 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcccccccHHHHHHHHHHHH
Q psy8245 3 STQANLVEWIAFSDFRLISQFTDVCKTFVQ 32 (629)
Q Consensus 3 ~~~~~~~~~~~f~D~rli~~~~~~C~~Di~ 32 (629)
+.+|..+..+.|.|....-.-...++-||+
T Consensus 23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~ 52 (61)
T d1veja1 23 QQELEELKALGFANRDANLQALVATDGDIH 52 (61)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCHH
Confidence 468999999999997665554555555544
No 9
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.04 E-value=2.5e+02 Score=19.63 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHH
Q psy8245 391 RSCGDEVRRVMR 402 (629)
Q Consensus 391 ~~C~~ev~~~~~ 402 (629)
.+|..||.|++-
T Consensus 18 ~ECa~EV~RyL~ 29 (55)
T d2db7a1 18 RECLAEVARYLS 29 (55)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 489999999874
No 10
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=2.47 E-value=2.3e+02 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.688 Sum_probs=12.0
Q ss_pred CCCchhhhhHhhhccC
Q psy8245 489 RGGDARVMSCLMDNLD 504 (629)
Q Consensus 489 ~~Gd~rvl~CL~~~~~ 504 (629)
.+-++|||-||||...
T Consensus 8 s~~E~RVlG~LiEK~~ 23 (84)
T d3bz6a1 8 NSTEVRILGCLIEKQA 23 (84)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhheecc
Confidence 3457899999998643
Done!