RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8245
         (629 letters)



>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein
           PSF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 30.5 bits (69), Expect = 0.20
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 144 VSKRLARACKEDIRT-HKCRRLVSDDREIRLAQI---LVCLENAVHNGSKVSGECQAEMT 199
           ++K L     ++I    + R LV D  + R+A++              +K+      E+ 
Sbjct: 34  LTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEIN 93

Query: 200 SHRKML 205
           +    L
Sbjct: 94  TSGTFL 99


>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 202

 Score = 29.0 bits (64), Expect = 1.4
 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 13/124 (10%)

Query: 277 DPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDNDV-----------MTAPCESALIQ 325
           +P L+   + V             ++M  L  + D  +           + AP      +
Sbjct: 24  NPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKR 83

Query: 326 IQYFIARDFELDPRLYRACYDEATRLCHAK--KEWFKVKDLEPNNGPLVLPCLYRYLYHS 383
           I   +  +   +    +  YD    + + K      +   L    G L +          
Sbjct: 84  IIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVR 143

Query: 384 ETKW 387
             + 
Sbjct: 144 HARV 147



 Score = 29.0 bits (64), Expect = 1.4
 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 13/124 (10%)

Query: 470 DPVLKEACQPVVDIACRGIRGGDARVMSCLMDNLDNDV-----------MTAPCESALIQ 518
           +P L+   + V             ++M  L  + D  +           + AP      +
Sbjct: 24  NPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKR 83

Query: 519 IQYFIARDFELDPRLYRACYDEATRLCHAK--KEWFKVKDLEPNNGPLVLPCLYRYLYHS 576
           I   +  +   +    +  YD    + + K      +   L    G L +          
Sbjct: 84  IIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVR 143

Query: 577 ETKW 580
             + 
Sbjct: 144 HARV 147


>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 81

 Score = 26.2 bits (58), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 190 VSGECQAEMTSHRKMLLTDYRLSP 213
           VS +   E   H+ ML+ + RL+ 
Sbjct: 36  VSRKAWDEWQKHQTMLINERRLNM 59


>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 196

 Score = 27.5 bits (61), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 395 DEVRRVMRQRAESVRLLPEVEQACVDDLGMYCPERTGPGQEMD 437
           DE+R V+ Q   +V  LP +E +C  DL +Y  +     ++ +
Sbjct: 119 DEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWE 161


>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 91

 Score = 26.2 bits (58), Expect = 4.0
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 190 VSGECQAEMTSHRKMLLTDYRLSP 213
           +S +  A+    + ML+ + +L+ 
Sbjct: 34  ISKDAWAQWQHKQTMLINEKKLNM 57


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 26.7 bits (59), Expect = 8.3
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 329 FIARDFELDPRLYRACYDEATRLCHAKKEWFK 360
           FI R+F     L      E       ++    
Sbjct: 251 FIPREFNYSEELIDQLKKEHDSAASLEQSLRV 282



 Score = 26.7 bits (59), Expect = 8.3
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 522 FIARDFELDPRLYRACYDEATRLCHAKKEWFK 553
           FI R+F     L      E       ++    
Sbjct: 251 FIPREFNYSEELIDQLKKEHDSAASLEQSLRV 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,436,228
Number of extensions: 118611
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 16
Length of query: 629
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 538
Effective length of database: 1,158,166
Effective search space: 623093308
Effective search space used: 623093308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.9 bits)