Query psy8246
Match_columns 527
No_of_seqs 398 out of 2972
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:27:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02252 nitrate reductase [NA 100.0 1E-54 2.3E-59 491.1 33.8 371 13-506 467-878 (888)
2 KOG0534|consensus 100.0 2.8E-40 6.1E-45 326.1 24.7 222 272-506 47-276 (286)
3 cd06188 NADH_quinone_reductase 100.0 6.9E-35 1.5E-39 294.4 22.0 232 274-513 7-281 (283)
4 PRK10926 ferredoxin-NADP reduc 100.0 3.3E-34 7.1E-39 284.0 25.9 219 275-506 3-228 (248)
5 cd06217 FNR_iron_sulfur_bindin 100.0 9.8E-34 2.1E-38 277.9 24.1 219 276-506 1-223 (235)
6 cd06184 flavohem_like_fad_nad_ 100.0 2.3E-33 5E-38 277.6 26.9 231 275-516 5-244 (247)
7 COG1018 Hmp Flavodoxin reducta 100.0 1.6E-33 3.4E-38 279.9 25.1 227 275-519 4-234 (266)
8 cd06211 phenol_2-monooxygenase 100.0 1.3E-33 2.7E-38 278.1 24.3 224 276-513 6-236 (238)
9 PRK11872 antC anthranilate dio 100.0 1.1E-33 2.3E-38 292.7 24.7 228 275-518 105-338 (340)
10 cd06191 FNR_iron_sulfur_bindin 100.0 1.4E-33 3.1E-38 276.3 24.2 222 280-513 2-229 (231)
11 PRK10684 HCP oxidoreductase, N 100.0 1.3E-33 2.8E-38 291.5 24.6 225 276-517 9-239 (332)
12 PTZ00274 cytochrome b5 reducta 100.0 1.2E-33 2.6E-38 288.9 23.5 220 274-504 50-283 (325)
13 PRK13289 bifunctional nitric o 100.0 2.6E-33 5.7E-38 296.3 26.5 234 274-518 152-395 (399)
14 cd06210 MMO_FAD_NAD_binding Me 100.0 1.7E-33 3.6E-38 276.7 23.0 215 278-506 3-223 (236)
15 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.9E-33 4.1E-38 277.3 23.0 216 280-507 1-224 (241)
16 cd06215 FNR_iron_sulfur_bindin 100.0 2.7E-33 5.9E-38 274.1 23.7 215 280-506 2-219 (231)
17 cd06189 flavin_oxioreductase N 100.0 3.7E-33 8E-38 272.2 24.1 217 279-513 1-222 (224)
18 cd06209 BenDO_FAD_NAD Benzoate 100.0 4.1E-33 8.9E-38 272.6 23.7 218 278-513 3-225 (228)
19 PRK07609 CDP-6-deoxy-delta-3,4 100.0 6.9E-33 1.5E-37 286.9 24.7 231 274-518 100-335 (339)
20 cd06212 monooxygenase_like The 100.0 6.4E-33 1.4E-37 271.9 23.2 222 278-513 2-229 (232)
21 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 9.1E-33 2E-37 287.5 25.7 233 276-517 1-243 (352)
22 PTZ00319 NADH-cytochrome B5 re 100.0 1.2E-32 2.6E-37 279.9 25.1 228 271-506 28-290 (300)
23 cd06216 FNR_iron_sulfur_bindin 100.0 2.1E-32 4.5E-37 270.2 24.9 214 275-506 16-232 (243)
24 cd06214 PA_degradation_oxidore 100.0 3.1E-32 6.7E-37 268.4 25.9 221 277-506 2-228 (241)
25 cd06196 FNR_like_1 Ferredoxin 100.0 1.7E-32 3.6E-37 266.4 22.5 204 278-506 2-208 (218)
26 cd00322 FNR_like Ferredoxin re 100.0 3.2E-32 6.9E-37 264.4 23.9 210 283-506 2-213 (223)
27 cd06213 oxygenase_e_transfer_s 100.0 4.4E-32 9.6E-37 265.1 24.3 211 278-506 2-215 (227)
28 PRK05464 Na(+)-translocating N 100.0 2.1E-32 4.6E-37 289.8 22.9 232 276-515 133-407 (409)
29 PRK08051 fre FMN reductase; Va 100.0 7.3E-32 1.6E-36 264.6 24.4 219 277-513 3-227 (232)
30 cd06190 T4MO_e_transfer_like T 100.0 4.4E-32 9.6E-37 265.9 22.1 219 281-514 1-230 (232)
31 TIGR01941 nqrF NADH:ubiquinone 100.0 3.5E-32 7.7E-37 287.7 22.0 233 276-516 129-404 (405)
32 cd06187 O2ase_reductase_like T 100.0 1.3E-31 2.7E-36 261.0 23.1 210 281-506 1-212 (224)
33 cd06208 CYPOR_like_FNR These f 100.0 1.6E-31 3.5E-36 270.2 24.5 225 276-506 8-261 (286)
34 cd06183 cyt_b5_reduct_like Cyt 100.0 1E-31 2.3E-36 263.1 21.9 216 279-506 1-224 (234)
35 PRK05713 hypothetical protein; 100.0 1.5E-31 3.2E-36 273.8 23.1 211 278-516 93-309 (312)
36 PRK08345 cytochrome-c3 hydroge 100.0 1.8E-31 3.9E-36 270.1 23.4 216 275-506 4-234 (289)
37 PLN03116 ferredoxin--NADP+ red 100.0 2.7E-31 5.8E-36 271.0 24.3 223 276-506 24-281 (307)
38 cd06194 FNR_N-term_Iron_sulfur 100.0 4.7E-31 1E-35 256.9 22.6 207 281-506 1-209 (222)
39 PLN03115 ferredoxin--NADP(+) r 100.0 6.5E-31 1.4E-35 271.8 23.6 224 277-506 91-341 (367)
40 cd06201 SiR_like2 Cytochrome p 100.0 9.2E-31 2E-35 264.9 24.0 213 273-506 42-267 (289)
41 KOG0536|consensus 100.0 3E-32 6.4E-37 232.0 6.8 108 17-124 37-144 (145)
42 cd06221 sulfite_reductase_like 100.0 6.7E-30 1.5E-34 253.9 21.6 206 281-506 1-212 (253)
43 cd06198 FNR_like_3 NAD(P) bind 100.0 8.3E-30 1.8E-34 247.1 21.7 204 287-513 5-213 (216)
44 COG0543 UbiB 2-polyprenylpheno 100.0 1.3E-29 2.8E-34 251.3 22.1 206 278-507 9-215 (252)
45 cd06182 CYPOR_like NADPH cytoc 100.0 1.3E-29 2.8E-34 253.6 21.4 204 289-506 15-237 (267)
46 PRK08221 anaerobic sulfite red 100.0 2E-29 4.3E-34 251.8 22.5 202 278-506 9-214 (263)
47 cd06192 DHOD_e_trans_like FAD/ 100.0 3.4E-29 7.3E-34 247.4 21.7 200 281-506 1-200 (243)
48 TIGR03224 benzo_boxA benzoyl-C 100.0 7E-29 1.5E-33 262.1 25.2 220 277-507 143-386 (411)
49 TIGR02911 sulfite_red_B sulfit 100.0 3.3E-29 7.1E-34 250.0 21.3 202 278-506 7-212 (261)
50 cd06185 PDR_like Phthalate dio 100.0 4.9E-29 1.1E-33 240.7 21.7 201 283-513 2-208 (211)
51 PRK05802 hypothetical protein; 100.0 6.6E-29 1.4E-33 254.0 23.0 211 272-506 60-276 (320)
52 cd06218 DHOD_e_trans FAD/NAD b 100.0 8.4E-29 1.8E-33 245.1 21.8 199 281-506 1-202 (246)
53 PRK06222 ferredoxin-NADP(+) re 100.0 8.1E-29 1.7E-33 249.8 21.7 199 279-506 2-203 (281)
54 cd06219 DHOD_e_trans_like1 FAD 100.0 7.5E-29 1.6E-33 245.7 20.6 199 279-506 1-202 (248)
55 cd06197 FNR_like_2 FAD/NAD(P) 100.0 5.6E-29 1.2E-33 242.2 18.2 185 283-506 2-212 (220)
56 cd06200 SiR_like1 Cytochrome p 100.0 2.2E-28 4.7E-33 241.9 22.6 198 290-506 17-225 (245)
57 PRK00054 dihydroorotate dehydr 100.0 2.5E-28 5.5E-33 242.2 22.2 200 275-506 3-203 (250)
58 PTZ00306 NADH-dependent fumara 100.0 4.3E-28 9.4E-33 285.3 24.5 221 272-506 910-1151(1167)
59 COG4097 Predicted ferric reduc 100.0 4.7E-28 1E-32 240.3 16.8 204 277-506 216-423 (438)
60 cd06220 DHOD_e_trans_like2 FAD 100.0 2.1E-27 4.6E-32 233.1 20.9 187 280-506 2-189 (233)
61 cd06193 siderophore_interactin 99.9 1.6E-26 3.4E-31 227.3 15.1 198 281-506 1-220 (235)
62 PRK12778 putative bifunctional 99.9 3.7E-25 8.1E-30 251.4 21.9 199 279-506 2-203 (752)
63 PRK12779 putative bifunctional 99.9 1.6E-24 3.5E-29 249.0 24.5 214 275-506 647-869 (944)
64 COG2871 NqrF Na+-transporting 99.9 4.8E-25 1E-29 211.4 14.2 222 277-506 135-396 (410)
65 cd06186 NOX_Duox_like_FAD_NADP 99.9 3E-24 6.5E-29 207.1 17.1 180 283-505 3-197 (210)
66 cd06207 CyPoR_like NADPH cytoc 99.9 1.7E-23 3.6E-28 220.0 17.3 174 321-506 161-352 (382)
67 PRK12775 putative trifunctiona 99.9 6.2E-23 1.3E-27 237.7 22.7 199 279-506 2-203 (1006)
68 cd06199 SiR Cytochrome p450- l 99.9 1.9E-23 4.1E-28 217.7 14.9 186 304-506 130-330 (360)
69 KOG0537|consensus 99.9 3.7E-24 8.1E-29 187.1 4.7 79 50-128 7-85 (124)
70 TIGR01931 cysJ sulfite reducta 99.9 1.4E-22 3E-27 223.5 15.1 185 305-506 368-567 (597)
71 cd06206 bifunctional_CYPOR The 99.9 2E-22 4.4E-27 211.9 15.5 185 305-506 146-350 (384)
72 cd06202 Nitric_oxide_synthase 99.9 1.5E-21 3.3E-26 206.4 17.8 174 322-506 175-372 (406)
73 cd06203 methionine_synthase_re 99.9 1.7E-21 3.6E-26 205.7 17.3 178 321-506 171-368 (398)
74 PLN02292 ferric-chelate reduct 99.9 3.8E-21 8.3E-26 212.3 20.5 150 277-435 325-486 (702)
75 cd06204 CYPOR NADPH cytochrome 99.9 3E-21 6.5E-26 204.8 16.8 173 321-506 175-386 (416)
76 PRK10953 cysJ sulfite reductas 99.9 4.6E-21 1E-25 210.7 14.7 185 305-506 371-570 (600)
77 PRK06214 sulfite reductase; Pr 99.8 4.4E-20 9.5E-25 199.1 18.4 171 322-506 314-500 (530)
78 PLN02631 ferric-chelate reduct 99.8 1.8E-19 4E-24 198.7 19.0 168 277-453 308-490 (699)
79 PLN02844 oxidoreductase/ferric 99.8 1.5E-18 3.2E-23 192.5 22.5 200 280-495 315-537 (722)
80 PF00970 FAD_binding_6: Oxidor 99.8 6.7E-19 1.5E-23 149.4 13.6 98 278-380 1-99 (99)
81 KOG3378|consensus 99.8 3.2E-19 6.9E-24 170.4 10.1 222 275-517 148-382 (385)
82 PF00173 Cyt-b5: Cytochrome b5 99.8 2.1E-19 4.5E-24 145.1 4.3 73 50-123 2-76 (76)
83 COG5274 CYB5 Cytochrome b invo 99.8 5.4E-19 1.2E-23 158.8 6.4 111 15-125 17-127 (164)
84 COG0369 CysJ Sulfite reductase 99.8 7.9E-18 1.7E-22 182.8 16.0 174 322-506 371-557 (587)
85 PF00175 NAD_binding_1: Oxidor 99.7 9.7E-18 2.1E-22 144.4 11.2 107 391-501 1-109 (109)
86 KOG1158|consensus 99.7 6.3E-16 1.4E-20 167.9 13.9 177 321-506 419-615 (645)
87 KOG0039|consensus 99.6 3.5E-15 7.6E-20 165.7 17.7 220 276-506 354-631 (646)
88 PLN03199 delta6-acyl-lipid des 99.6 6.5E-16 1.4E-20 166.5 7.4 80 45-127 20-100 (485)
89 PLN03198 delta6-acyl-lipid des 99.6 5.4E-16 1.2E-20 167.6 4.9 75 50-126 106-180 (526)
90 PRK06567 putative bifunctional 99.5 3.4E-13 7.3E-18 152.4 18.7 129 277-420 791-923 (1028)
91 KOG1159|consensus 99.5 1.9E-13 4.2E-18 140.7 13.5 169 322-506 366-545 (574)
92 PF08030 NAD_binding_6: Ferric 99.3 2.9E-12 6.4E-17 117.5 6.8 118 386-503 1-155 (156)
93 KOG4232|consensus 99.3 1.6E-12 3.4E-17 132.7 2.2 78 50-128 10-88 (430)
94 COG2375 ViuB Siderophore-inter 99.2 1.2E-09 2.6E-14 107.1 20.2 206 272-505 13-242 (265)
95 KOG4576|consensus 99.2 1.5E-11 3.2E-16 105.6 3.4 77 50-127 82-161 (167)
96 PF08022 FAD_binding_8: FAD-bi 98.9 2.2E-10 4.7E-15 98.4 -0.8 91 278-377 3-103 (105)
97 PF08021 FAD_binding_9: Sidero 98.8 2.2E-08 4.7E-13 87.6 8.4 94 280-378 1-117 (117)
98 cd06490 p23_NCB5OR p23_like do 98.7 1.3E-07 2.8E-12 78.2 9.2 82 172-253 1-87 (87)
99 COG4892 Predicted heme/steroid 98.5 2.4E-07 5.2E-12 70.8 5.2 73 50-125 4-78 (81)
100 cd06488 p23_melusin_like p23_l 97.7 0.0002 4.4E-09 59.1 8.4 81 171-252 2-86 (87)
101 KOG1110|consensus 96.9 0.0024 5.2E-08 58.8 6.5 51 50-102 58-112 (183)
102 cd06466 p23_CS_SGT1_like p23_l 96.9 0.0048 1E-07 50.1 7.6 79 173-252 1-83 (84)
103 PLN03088 SGT1, suppressor of 96.8 0.0032 7E-08 65.9 7.9 83 169-253 156-243 (356)
104 cd06489 p23_CS_hSgt1_like p23_ 96.5 0.011 2.3E-07 48.3 7.3 79 173-252 1-83 (84)
105 KOG1309|consensus 95.5 0.037 8E-07 51.0 6.6 83 170-253 4-90 (196)
106 KOG1108|consensus 94.8 0.031 6.8E-07 53.3 4.0 53 49-102 61-116 (281)
107 cd06465 p23_hB-ind1_like p23_l 93.7 0.38 8.3E-06 41.1 8.2 81 170-253 1-87 (108)
108 cd06468 p23_CacyBP p23_like do 93.5 0.52 1.1E-05 38.9 8.5 81 171-252 3-91 (92)
109 PF04969 CS: CS domain; Inter 93.5 0.76 1.7E-05 36.1 9.2 72 170-242 1-78 (79)
110 cd06463 p23_like Proteins cont 93.5 0.44 9.5E-06 37.9 7.8 78 174-252 1-83 (84)
111 KOG1667|consensus 92.6 0.38 8.2E-06 46.8 7.0 85 170-255 215-304 (320)
112 cd06469 p23_DYX1C1_like p23_li 91.1 1.2 2.6E-05 35.3 7.5 76 174-252 1-77 (78)
113 cd06467 p23_NUDC_like p23_like 87.1 3.4 7.4E-05 33.2 7.6 80 172-252 1-84 (85)
114 cd06493 p23_NUDCD1_like p23_NU 81.5 10 0.00022 30.8 8.0 78 172-251 1-83 (85)
115 cd06494 p23_NUDCD2_like p23-li 79.3 16 0.00034 30.5 8.5 79 169-251 5-91 (93)
116 PF14901 Jiv90: Cleavage induc 73.2 2 4.4E-05 35.7 1.5 17 64-80 57-73 (94)
117 cd00237 p23 p23 binds heat sho 73.2 25 0.00054 30.0 8.3 81 170-253 2-87 (106)
118 PF04954 SIP: Siderophore-inte 63.2 24 0.00051 30.6 6.3 99 387-505 2-101 (119)
119 PF00677 Lum_binding: Lumazine 59.6 36 0.00078 27.7 6.4 77 278-372 7-83 (85)
120 cd00298 ACD_sHsps_p23-like Thi 48.8 82 0.0018 23.6 6.8 36 174-209 1-37 (80)
121 PRK12446 undecaprenyldiphospho 44.0 26 0.00055 36.6 4.0 32 387-419 2-35 (352)
122 PLN02844 oxidoreductase/ferric 43.1 17 0.00038 41.6 2.7 25 484-508 675-699 (722)
123 PLN02292 ferric-chelate reduct 38.9 23 0.0005 40.5 2.8 23 484-506 666-688 (702)
124 KOG0720|consensus 34.0 21 0.00045 38.1 1.4 16 64-79 379-394 (490)
125 PRK02290 3-dehydroquinate synt 33.9 2.9E+02 0.0062 28.8 9.4 111 273-395 164-285 (344)
126 PLN02631 ferric-chelate reduct 33.1 44 0.00096 38.2 3.8 23 484-506 663-685 (699)
127 PLN02343 allene oxide cyclase 32.9 49 0.0011 31.3 3.4 50 343-399 111-164 (229)
128 PF01959 DHQS: 3-dehydroquinat 32.0 2E+02 0.0044 30.0 8.1 110 274-395 175-295 (354)
129 PF06351 Allene_ox_cyc: Allene 30.9 34 0.00074 31.1 2.0 49 344-399 61-113 (176)
130 COG1465 Predicted alternative 30.0 4.4E+02 0.0095 26.9 9.6 36 340-377 260-295 (376)
131 PRK01885 greB transcription el 29.6 1E+02 0.0022 28.2 5.0 64 306-380 86-149 (157)
132 PF00667 FAD_binding_1: FAD bi 29.5 40 0.00087 32.5 2.5 27 321-351 176-202 (219)
133 PHA02099 hypothetical protein 29.2 79 0.0017 24.6 3.4 51 343-396 2-53 (84)
134 PF01272 GreA_GreB: Transcript 27.3 99 0.0021 24.4 4.0 64 306-379 6-69 (77)
135 PRK09783 copper/silver efflux 26.9 4.3E+02 0.0093 28.1 10.0 40 278-318 279-321 (409)
136 TIGR00999 8a0102 Membrane Fusi 25.9 4.2E+02 0.0091 25.7 9.2 41 277-318 155-198 (265)
137 COG0782 Uncharacterized conser 25.1 1.3E+02 0.0028 27.4 4.8 64 306-379 79-142 (151)
138 PF00667 FAD_binding_1: FAD bi 25.0 1.8E+02 0.004 27.8 6.2 43 275-318 7-54 (219)
139 PRK00226 greA transcription el 24.6 1.2E+02 0.0025 27.7 4.4 64 306-379 86-149 (157)
140 PRK13020 riboflavin synthase s 23.9 2.6E+02 0.0055 26.9 6.8 83 278-378 106-189 (206)
141 TIGR01730 RND_mfp RND family e 22.8 4.9E+02 0.011 25.9 9.2 41 277-318 203-246 (322)
142 KOG2596|consensus 22.5 2.7E+02 0.0059 29.5 6.9 63 306-374 82-145 (479)
143 PF08877 MepB: MepB protein; 21.3 4.3E+02 0.0094 23.3 7.0 50 287-349 14-63 (123)
No 1
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=1e-54 Score=491.12 Aligned_cols=371 Identities=24% Similarity=0.364 Sum_probs=275.7
Q ss_pred CCCCCccccCCCCCCcchhh-hhccCCC------CCCC----C----CCCcc-cCHHHHhcccCCCCeEEEEcCEEEecc
Q psy8246 13 TGNPRNKTALKPGHSLMDWI-RLGNSGV------NLSG----I----QGRIL-VSKAQLAEHNKEDDMWMCIRGVVYNVT 76 (527)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~w~-~~~~~~~------~~~~----~----~~~~~-~t~~e~~~h~~~~~~wvii~g~VYDvt 76 (527)
..+-||+||++||...+||| +..+.+. .+.. . .+..+ |+++|+++|++.++|||+|+|+|||+|
T Consensus 467 ~~~~~f~hp~~~~~~~ggwm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT 546 (888)
T PLN02252 467 EIGLVFEHPTQPGNQSGGWMAKQKHLETASAAAPALKKSVSTPFMNTNTGSKQYTMSEVRKHNSEDSCWIVVHGHVYDCT 546 (888)
T ss_pred cceEEEeCCCCccCCCCCcchhhhhcccccccccccccccCCcccCCccccceeCHHHHHhhCcCCCeEEEECCEEEeCH
Confidence 44569999999999999999 5444220 1110 0 11224 999999999999999999999999999
Q ss_pred cCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy8246 77 RYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSLPDENPFVIPSKKSSEPKPLPSINVPVKPFE 156 (527)
Q Consensus 77 ~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (527)
+|+..||||.++|+.++|+|+|++|+++|+. .+++||++|+||+|............ ..... ..
T Consensus 547 ~fl~~HPGG~~~I~~~aG~DaT~~F~~~Hs~-~a~~~L~~~~IG~l~~~~~~~~~~~~---~~~~~------------~~ 610 (888)
T PLN02252 547 RFLKDHPGGADSILINAGTDCTEEFDAIHSD-KAKKMLEDYRIGELVTTGAAASSSAS---SHPLS------------AI 610 (888)
T ss_pred HHHHHCCChHHHHHhhcCCCcHHHHhhhhhH-HHHHHHHhCcCCcccccccccccccc---ccccc------------cc
Confidence 9999999999999999999999999999874 67789999999999866543221000 00000 00
Q ss_pred ccccccCCCCCCCCccceEeecCcEEEEEEeccCCCceEEecCCCceEEEEEEcCeeeeeeccCCcccceeEEEeeeeeE
Q psy8246 157 NEKASSNNVSKSFYSMDWFQQLNFICFVFYLKSSCPKVLITLNENNTDLSLLINERSLLLHLEQPVKWPCQVKINLNVGK 236 (527)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (527)
. .. ..+ . .... . ..
T Consensus 611 ~------~~--~~~-----------------------------------------------~-~~~~--------~--~~ 624 (888)
T PLN02252 611 S------TA--SAL-----------------------------------------------A-AASP--------A--PG 624 (888)
T ss_pred c------cc--ccc-----------------------------------------------c-cccC--------C--cc
Confidence 0 00 000 0 0000 0 00
Q ss_pred EEEEEcccccccccccCcccccCCcCCCCcccccCCCCceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEE
Q psy8246 237 LQLQLNKEEAKLWKHHSTKTSTNNITSNSTSSVNIPVSKFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIK 315 (527)
Q Consensus 237 ~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~ 315 (527)
..++| .+..|.+++|++++.+++|++.|+|+++.... +.+++||||+|+
T Consensus 625 ~~~~l------------------------------~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~ 674 (888)
T PLN02252 625 RPVAL------------------------------NPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLC 674 (888)
T ss_pred ccccc------------------------------ccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEE
Confidence 01112 22346789999999999999999999987643 469999999999
Q ss_pred EEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccC-----
Q psy8246 316 FIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVG----- 381 (527)
Q Consensus 316 ~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~----- 381 (527)
+...|..+.|+|||++.+. +.+.|+|+||+| ++|.+|++|++|++||+|+|+||+|.|.+.
T Consensus 675 ~~~~g~~~~R~YSpaS~~~-----~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f 749 (888)
T PLN02252 675 ATINGKLCMRAYTPTSSDD-----EVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSF 749 (888)
T ss_pred EecCCeEEEeeeEecccCC-----CCCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeeccccee
Confidence 9877888899999999763 578999999999 579999999999999999999999987542
Q ss_pred ---C-CCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcC-CCCeEeccCCCCC
Q psy8246 382 ---L-IGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKN-SKPSSPRNPSTEI 454 (527)
Q Consensus 382 ---~-~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~-~~~~~~~~~s~~~ 454 (527)
. ....++++|||||||||||++||+++++.. .++|+|+|++|+++|++|++||++|++++ ++|++....++..
T Consensus 750 ~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~ 829 (888)
T PLN02252 750 LVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVK 829 (888)
T ss_pred eeccccccCceEEEEecceehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 1 123579999999999999999999998764 57999999999999999999999999876 6888876655422
Q ss_pred CcccccccccchhhhhhchhHHHhhhcC--CCcEEEEcCchHHHH-HHHHHHHHh
Q psy8246 455 KPLKNIISFLMRIRTTLKRVELEDLLNS--NSLVYSQLNLPYAVA-AVADKMTGM 506 (527)
Q Consensus 455 ~~~~g~~~~~~ri~~~~~~~~l~~l~~~--~~~~~yiCGPp~m~~-~v~~~L~~l 506 (527)
. .+.....+++...+ +++++.. ....+|+|||++|++ ++...|+++
T Consensus 830 ~--~~w~g~~GrV~~~l----l~~~l~~~~~~~~vyiCGPp~Mi~~av~~~L~~~ 878 (888)
T PLN02252 830 R--EGWKYSVGRVTEAM----LREHLPEGGDETLALMCGPPPMIEFACQPNLEKM 878 (888)
T ss_pred c--CCCCCcCCcCCHHH----HHHhcccCCCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 0 01111234443322 3333321 245688999999999 578888876
No 2
>KOG0534|consensus
Probab=100.00 E-value=2.8e-40 Score=326.05 Aligned_cols=222 Identities=23% Similarity=0.364 Sum_probs=185.9
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
++..|+++++++++.++||+..|+|.+|... .+.++.||||.++++.+|..+.|+|||++.+. +.|.|+|+||.
T Consensus 47 ~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-----~~g~~~l~VK~ 121 (286)
T KOG0534|consen 47 DPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-----DKGYFDLVVKV 121 (286)
T ss_pred CCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-----ccceEEEEEEe
Confidence 3348999999999999999999999999654 45699999999999999999999999999873 56899999999
Q ss_pred eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchh
Q psy8246 351 YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDI 428 (527)
Q Consensus 351 y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di 428 (527)
|.+|.||+||+.|++||+|+++||.|.|.+.+ +..+++.|||||||||||+|++++++.+. .++|+|+|+|++++||
T Consensus 122 Y~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~-~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~DI 200 (286)
T KOG0534|consen 122 YPKGKMSQHLDSLKIGDTVEFRGPIGEFKYDP-QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDDI 200 (286)
T ss_pred ccCCcccHHHhcCCCCCEEEEecCccceEecC-CCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecCCcccc
Confidence 99999999999999999999999999999987 46899999999999999999999999887 7899999999999999
Q ss_pred hhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCC---CcEEEEcCchHHHH-HHHHHH
Q psy8246 429 IWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSN---SLVYSQLNLPYAVA-AVADKM 503 (527)
Q Consensus 429 ~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~---~~~~yiCGPp~m~~-~v~~~L 503 (527)
++++||+.++.+++ +|++....+..... .....+++.. +.+.+.+..+ ...++|||||+|++ ++...|
T Consensus 201 Llr~eL~~la~~~p~rf~~~y~v~~~~~~---w~~~~g~It~----~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~l 273 (286)
T KOG0534|consen 201 LLREELEELASKYPERFKVWYVVDQPPEI---WDGSVGFITK----DLIKEHLPPPKEGETLVLICGPPPMINGAAQGNL 273 (286)
T ss_pred chHHHHHHHHhhCcceEEEEEEEcCCccc---ccCccCccCH----HHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHH
Confidence 99999999999976 89887654433211 1112344433 3333333221 46778999999998 466667
Q ss_pred HHh
Q psy8246 504 TGM 506 (527)
Q Consensus 504 ~~l 506 (527)
+++
T Consensus 274 e~L 276 (286)
T KOG0534|consen 274 EKL 276 (286)
T ss_pred Hhc
Confidence 766
No 3
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=6.9e-35 Score=294.45 Aligned_cols=232 Identities=14% Similarity=0.203 Sum_probs=180.7
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC-----------------------------Ceeee
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-----------------------------DVDIS 324 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-----------------------------g~~~~ 324 (527)
..++.++|++++.+++|++.|+|+.+....+.|+|||||.|+++.. +....
T Consensus 7 ~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (283)
T cd06188 7 AKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVS 86 (283)
T ss_pred cceEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccc
Confidence 3467799999999999999999999875445699999999998643 23456
Q ss_pred eeeeccCCCCCCCCCCCCEEEEEEEE---------eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEec
Q psy8246 325 KPYTPVEPLQAAPLSYSNTLTFLIKS---------YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAG 395 (527)
Q Consensus 325 R~YT~~s~~~~~~~~~~~~l~l~IK~---------y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgG 395 (527)
|+|||++.+. +.+.++|+||+ +++|.+|++|+++++||+|.|.||+|.|.+.. ..++++|||||
T Consensus 87 R~ySias~p~-----~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~--~~~~~vlIAgG 159 (283)
T cd06188 87 RAYSLANYPA-----EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD--TDREMVFIGGG 159 (283)
T ss_pred cccCcCCCCC-----CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECccccccccC--CCCcEEEEEec
Confidence 9999999863 57899999997 45899999999999999999999999998753 45799999999
Q ss_pred CCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhch
Q psy8246 396 TGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKR 473 (527)
Q Consensus 396 tGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~ 473 (527)
||||||++|+++++... ..+++|+|++|+.+|++++++|+++++++++|+++...+++.... +.....+++...+..
T Consensus 160 tGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~-~~~~~~G~v~~~~~~ 238 (283)
T cd06188 160 AGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPED-NWDGYTGFIHQVLLE 238 (283)
T ss_pred ccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccC-CCCCcceeecHHHHH
Confidence 99999999999988765 368999999999999999999999998878888876544432100 011123444443333
Q ss_pred hHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCC
Q psy8246 474 VELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPE 513 (527)
Q Consensus 474 ~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~ 513 (527)
..+....+..+..+|+|||++|++++.+.|+++ ++.+..|
T Consensus 239 ~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e 281 (283)
T cd06188 239 NYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFD 281 (283)
T ss_pred HHhccCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 222222122346788999999999999999887 5555544
No 4
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=3.3e-34 Score=283.99 Aligned_cols=219 Identities=19% Similarity=0.254 Sum_probs=175.2
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.|+.++|++++.++++++.|+|+.+. ..|+||||+.|+++.+|....|+||+++.+ +.+.++|+||.+++|
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~---~~~~pGQfv~l~~~~~g~~~~R~ySias~p------~~~~l~~~ik~~~~G 73 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV---DPFTAGQFTKLGLEIDGERVQRAYSYVNAP------DNPDLEFYLVTVPEG 73 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC---CCCCCCCEEEEEEecCCcEEEeeecccCCC------CCCeEEEEEEEeCCC
Confidence 47889999999999999999998752 248999999999976777778999999976 456899999999999
Q ss_pred CchHhhhcCCCCCEEEEeccc-cccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCGLREGQELEVSSPE-GKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~i~GP~-G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|++|+++++||+|.|.||. |.|.+......++++|||||||||||++|++++.... ..+++|+|++|+.+|++|++
T Consensus 74 ~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~ 153 (248)
T PRK10926 74 KLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAARYAADLSYLP 153 (248)
T ss_pred CcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHHHHHH
Confidence 999999999999999999987 5566654223479999999999999999999987655 57899999999999999999
Q ss_pred HHHHHHhcC-CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh----cCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 433 QLDTFASKN-SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL----NSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 433 eL~~l~~~~-~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~----~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|++|++.+ ++|++....+++... ....+++...+.+..+.... +.....+|+|||++|++++.+.|++.
T Consensus 154 el~~l~~~~~~~~~v~~~~s~~~~~----~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 154 LMQELEQRYEGKLRIQTVVSRETAP----GSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred HHHHHHHhCcCCEEEEEEECCCCCC----CCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 999998875 588887766653211 11234554433332232211 12346788999999999999999875
No 5
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=9.8e-34 Score=277.94 Aligned_cols=219 Identities=20% Similarity=0.298 Sum_probs=177.1
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEe-CCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIV-NDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
|++++|++++.++++++.|+|+.++.....|+||||+.|+++. ++....|+|||++.+. +.+.++|+||.+++|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-----~~~~l~l~v~~~~~G 75 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-----QRGRVELTVKRVPGG 75 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-----CCCeEEEEEEEcCCC
Confidence 5679999999999999999999887543459999999999973 4556779999999763 567899999999889
Q ss_pred CchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|.+|++ +++||.|.|.||+|.|.+.. ...++++||||||||||+++++++++..+ ..+++|+|++|+.+|+++.+
T Consensus 76 ~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~-~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~ 154 (235)
T cd06217 76 EVSPYLHDEVKVGDLLEVRGPIGTFTWNP-LHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAEDVIFRD 154 (235)
T ss_pred cchHHHHhcCCCCCEEEEeCCceeeEeCC-CCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCCHHHhhHHH
Confidence 99999986 99999999999999998754 24679999999999999999999999876 67899999999999999999
Q ss_pred HHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 433 QLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 433 eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|++++++++++++....+++... +.....+++.. ..+.++. +.....+|+|||++|++++.+.|+++
T Consensus 155 el~~~~~~~~~~~~~~~~s~~~~~--~~~~~~g~~~~----~~l~~~~~~~~~~~v~icGp~~m~~~v~~~l~~~ 223 (235)
T cd06217 155 ELEQLARRHPNLHVTEALTRAAPA--DWLGPAGRITA----DLIAELVPPLAGRRVYVCGPPAFVEAATRLLLEL 223 (235)
T ss_pred HHHHHHHHCCCeEEEEEeCCCCCC--CcCCcCcEeCH----HHHHhhCCCccCCEEEEECCHHHHHHHHHHHHHc
Confidence 999999877788887655543111 11112233322 2233332 22346788999999999999999886
No 6
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=2.3e-33 Score=277.64 Aligned_cols=231 Identities=18% Similarity=0.212 Sum_probs=185.1
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCC--eeeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVND--VDISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g--~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
.|+.++|++++.++++++.|+|+.+.... ..|+||||+.|+++..+ ....|+|||++.+ ..+.|+|.||.+
T Consensus 5 ~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~------~~~~l~~~ik~~ 78 (247)
T cd06184 5 GFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAP------NGDYYRISVKRE 78 (247)
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCC------CCCeEEEEEEEc
Confidence 47889999999999999999999887543 45999999999997655 4688999999976 445899999999
Q ss_pred CCCCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhh
Q psy8246 352 EDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDII 429 (527)
Q Consensus 352 ~~G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~ 429 (527)
++|.+|+||++ +++||+|.|.||+|.|.+.. ...++++|||||||||||++++++++... ..+++|+|++|+.++++
T Consensus 79 ~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~-~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~~~~~~ 157 (247)
T cd06184 79 PGGLVSNYLHDNVKVGDVLEVSAPAGDFVLDE-ASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARNSAVHA 157 (247)
T ss_pred CCCcchHHHHhcCCCCCEEEEEcCCCceECCC-CCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCchhhHH
Confidence 88999999998 99999999999999998765 35679999999999999999999999864 57999999999999999
Q ss_pred hHHHHHHHHhcCCCCeEeccCCCCCCccc-ccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh--
Q psy8246 430 WRDQLDTFASKNSKPSSPRNPSTEIKPLK-NIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM-- 506 (527)
Q Consensus 430 ~~~eL~~l~~~~~~~~~~~~~s~~~~~~~-g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l-- 506 (527)
|+++|++|++++++++++...++...... +.....+++. ...+.+........+|+|||++|++++++.|+++
T Consensus 158 ~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~----~~~l~~~~~~~~~~v~icGp~~m~~~v~~~l~~~G~ 233 (247)
T cd06184 158 FRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRID----LALLRELLLPADADFYLCGPVPFMQAVREGLKALGV 233 (247)
T ss_pred HHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccC----HHHHhhccCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 99999999887778888766554322100 0001123332 2223332223456788999999999999999987
Q ss_pred -hhhcCCCCCC
Q psy8246 507 -ENKMNPEIPP 516 (527)
Q Consensus 507 -~~~m~~~~~~ 516 (527)
.+++..|.+.
T Consensus 234 ~~~~i~~e~f~ 244 (247)
T cd06184 234 PAERIHYEVFG 244 (247)
T ss_pred CHHHeeeeccC
Confidence 5567777665
No 7
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=1.6e-33 Score=279.89 Aligned_cols=227 Identities=20% Similarity=0.205 Sum_probs=184.7
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.|+.++|++++.+++|++.|+|+.+.+..+.|+|||||.|.++.+|..+.|.||++|.+. +...+.|.||+.++|
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-----~~~~~~isVk~~~~G 78 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-----EDSLYRISVKREDGG 78 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-----CCceEEEEEEEeCCC
Confidence 478899999999999999999999988766799999999999998889999999999873 456999999998889
Q ss_pred CchHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHH
Q psy8246 355 LLSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQ 433 (527)
Q Consensus 355 ~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~e 433 (527)
.+|+||+ ++++||+|.|.+|.|.|.++.. ...+++|||||+|||||++|++.+...+..+|.|+|++|+.+++.|++|
T Consensus 79 ~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~-~~~~~llla~G~GITP~lSml~~~~~~~~~~v~l~h~~R~~~~~af~de 157 (266)
T COG1018 79 GGSNWLHDHLKVGDTLEVSAPAGDFVLDDL-PERKLLLLAGGIGITPFLSMLRTLLDRGPADVVLVHAARTPADLAFRDE 157 (266)
T ss_pred cccHHHHhcCCCCCEEEEecCCCCccCCCC-CCCcEEEEeccccHhHHHHHHHHHHHhCCCCEEEEEecCChhhcchhhH
Confidence 9999999 5999999999999999999773 3448999999999999999999987754367999999999999999999
Q ss_pred HHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhc
Q psy8246 434 LDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKM 510 (527)
Q Consensus 434 L~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m 510 (527)
+.+.+++++......... +... .++ +....+........+.+|+|||.+||++++..|.++ ..++
T Consensus 158 -~~l~~~~~~~~~~~~~~~-~~~~------~g~----~~~~~l~~~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~~v 225 (266)
T COG1018 158 -LELAAELPNALLLGLYTE-RGKL------QGR----IDVSRLLSAAPDGGREVYLCGPGPFMQAVRLALEALGVPDDRV 225 (266)
T ss_pred -HHHHhhCCCCeeEEEEEe-cCCc------ccc----ccHHHHhccCCCCCCEEEEECCHHHHHHHHHHHHHcCCChhcE
Confidence 998887665333222111 1111 111 112222223222237889999999999999999888 7788
Q ss_pred CCCCCCCCC
Q psy8246 511 NPEIPPNNP 519 (527)
Q Consensus 511 ~~~~~~~~~ 519 (527)
..|-+++.+
T Consensus 226 h~E~F~~~~ 234 (266)
T COG1018 226 HLEGFGPML 234 (266)
T ss_pred EEeecCCCC
Confidence 888888775
No 8
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=1.3e-33 Score=278.09 Aligned_cols=224 Identities=17% Similarity=0.211 Sum_probs=178.7
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL 355 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~ 355 (527)
...++|++++.++++++.|+|+.+.+....|+||||+.|+++ +....|+|||++.+. +.+.++|+||++++|.
T Consensus 6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~-----~~~~l~l~i~~~~~G~ 78 (238)
T cd06211 6 DFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAP--GYEGTRAFSIASSPS-----DAGEIELHIRLVPGGI 78 (238)
T ss_pred EEeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcC--CCCCccccccCCCCC-----CCCEEEEEEEECCCCc
Confidence 457999999999999999999998765446999999999976 334679999999763 5789999999999999
Q ss_pred chHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHH
Q psy8246 356 LSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQ 433 (527)
Q Consensus 356 ~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~e 433 (527)
+|.+|+ .+++||+|.|.||+|.|.+.. ...++++||||||||||+++++++++..+ ..+++|+|++|+.+|+++.++
T Consensus 79 ~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 157 (238)
T cd06211 79 ATTYVHKQLKEGDELEISGPYGDFFVRD-SDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLDE 157 (238)
T ss_pred chhhHhhcCCCCCEEEEECCccceEecC-CCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhccHHH
Confidence 999997 599999999999999988754 34589999999999999999999998876 568999999999999999999
Q ss_pred HHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc--CCCcEEEEcCchHHHHHHHHHHHHh---hh
Q psy8246 434 LDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN--SNSLVYSQLNLPYAVAAVADKMTGM---EN 508 (527)
Q Consensus 434 L~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~--~~~~~~yiCGPp~m~~~v~~~L~~l---~~ 508 (527)
|+++++.+++|+++...+++... .......+++.+. +.++.. .....+|+|||++|++++.+.|.++ +.
T Consensus 158 l~~l~~~~~~~~~~~~~s~~~~~-~~~~~~~g~v~~~-----l~~~~~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~ 231 (238)
T cd06211 158 FEALEKDHPNFKYVPALSREPPE-SNWKGFTGFVHDA-----AKKHFKNDFRGHKAYLCGPPPMIDACIKTLMQGRLFER 231 (238)
T ss_pred HHHHHHhCCCeEEEEEECCCCCC-cCcccccCcHHHH-----HHHhcccccccCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 99999887788887655543210 0111123444322 222222 2246788999999999999999987 45
Q ss_pred hcCCC
Q psy8246 509 KMNPE 513 (527)
Q Consensus 509 ~m~~~ 513 (527)
++..|
T Consensus 232 ~i~~e 236 (238)
T cd06211 232 DIYYE 236 (238)
T ss_pred Hcccc
Confidence 55544
No 9
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=292.74 Aligned_cols=228 Identities=18% Similarity=0.188 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCC-cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~-~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
....++|++++.+++|++.|+|+.+.. ..+.|.||||+.|+++ +....|+||+++.+. +.+.++|+||++++
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySias~p~-----~~~~l~~~ik~~~~ 177 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIP--GTDDWRSYSFANRPN-----ATNQLQFLIRLLPD 177 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeC--CCCceeecccCCCCC-----CCCeEEEEEEECCC
Confidence 456799999999999999999998744 3456999999999976 445689999999763 57899999999999
Q ss_pred CCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhH
Q psy8246 354 GLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWR 431 (527)
Q Consensus 354 G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~ 431 (527)
|.+|.+|++ +++||.|.|+||+|.|.+.. ..++++|||||||||||++|+++++... ..+++|+|++|+.+|++++
T Consensus 178 G~~s~~L~~~l~~G~~v~i~gP~G~f~l~~--~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~ 255 (340)
T PRK11872 178 GVMSNYLRERCQVGDEILFEAPLGAFYLRE--VERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAADLCEL 255 (340)
T ss_pred CcchhhHhhCCCCCCEEEEEcCcceeEeCC--CCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEEEEecCChHHhccH
Confidence 999999975 99999999999999998754 3589999999999999999999998876 5689999999999999999
Q ss_pred HHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hh
Q psy8246 432 DQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---EN 508 (527)
Q Consensus 432 ~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~ 508 (527)
++|++|++++++|+++...++......+ ..+++...+... .+......+|+|||++|++++.+.|++. ++
T Consensus 256 ~el~~~~~~~~~~~~~~~~s~~~~~~~g---~~g~v~~~l~~~----~l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~ 328 (340)
T PRK11872 256 QRLAAYAERLPNFRYHPVVSKASADWQG---KRGYIHEHFDKA----QLRDQAFDMYLCGPPPMVEAVKQWLDEQALENY 328 (340)
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCcCCC---ceeeccHHHHHh----hcCcCCCEEEEeCCHHHHHHHHHHHHHcCCCHH
Confidence 9999999888889987655432211111 233443333221 1222235688999999999999999887 66
Q ss_pred hcCCCCCCCC
Q psy8246 509 KMNPEIPPNN 518 (527)
Q Consensus 509 ~m~~~~~~~~ 518 (527)
.+..|-+.++
T Consensus 329 ~i~~E~F~~~ 338 (340)
T PRK11872 329 RLYYEKFTQS 338 (340)
T ss_pred HEEEeeecCC
Confidence 7777766643
No 10
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=1.4e-33 Score=276.30 Aligned_cols=222 Identities=19% Similarity=0.275 Sum_probs=176.7
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHh
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~ 359 (527)
+|++++.++++++.|+|+.+....+.|.||||+.|+++.+|....|+||+++.+ ..+.++|.||.+++|.+|.|
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~------~~~~l~~~v~~~~~G~~s~~ 75 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSP------APDEISITVKRVPGGRVSNY 75 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCC------CCCeEEEEEEECCCCccchH
Confidence 789999999999999999877654569999999999987777789999999975 56789999999989999999
Q ss_pred hh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHH
Q psy8246 360 LC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTF 437 (527)
Q Consensus 360 L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l 437 (527)
|+ ++++||.|.|.||+|.|.+.. ...++++||||||||||+++|+++++... ..+++|+|++|+.+|++|++||++|
T Consensus 76 l~~~~~~Gd~v~i~gP~G~f~l~~-~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l 154 (231)
T cd06191 76 LREHIQPGMTVEVMGPQGHFVYQP-QPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQELREL 154 (231)
T ss_pred HHhcCCCCCEEEEeCCccceEeCC-CCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHHHHHHH
Confidence 98 599999999999999998865 34679999999999999999999998765 6799999999999999999999999
Q ss_pred HhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC-CCcEEEEcCchHHHHHHHHHHHHh---hhhcCCC
Q psy8246 438 ASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS-NSLVYSQLNLPYAVAAVADKMTGM---ENKMNPE 513 (527)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~-~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~ 513 (527)
+++++++++....+++.... +.....+++... ..+.+... ....+|+|||++|++++++.|+++ .+++..|
T Consensus 155 ~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~----l~~~~~~~~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E 229 (231)
T cd06191 155 ADKPQRLRLLCIFTRETLDS-DLLHGRIDGEQS----LGAALIPDRLEREAFICGPAGMMDAVETALKELGMPPERIHTE 229 (231)
T ss_pred HHhCCCeEEEEEECCCCCCc-cccCCcccccHH----HHHHhCccccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 98778888876655432110 000111111111 11222221 235788999999999999999876 4455444
No 11
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1.3e-33 Score=291.47 Aligned_cols=225 Identities=20% Similarity=0.279 Sum_probs=180.3
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL 355 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~ 355 (527)
.+.++|++++.++++++.|+|+.++. ..|+||||+.|+++ .+....|+||+++.+. +.+.|+|.||++++|.
T Consensus 9 ~~~~~V~~i~~~t~~v~~l~l~~~~~--~~f~pGQfv~l~~~-~~~~~~R~ySias~p~-----~~~~l~i~Vk~~~~G~ 80 (332)
T PRK10684 9 PNRMQVHSIVQETPDVWTISLICHDF--YPYRAGQYALVSIR-NSAETLRAYTLSSTPG-----VSEFITLTVRRIDDGV 80 (332)
T ss_pred ceeEEEEEEEccCCCeEEEEEcCCCC--CCcCCCCEEEEEec-CCCEeeeeecccCCCC-----CCCcEEEEEEEcCCCc
Confidence 34789999999999999999987643 35999999999987 3445679999999763 4678999999999999
Q ss_pred chHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHH
Q psy8246 356 LSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQ 433 (527)
Q Consensus 356 ~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~e 433 (527)
+|+||+ ++++||+|.++||+|.|.+.. ...++++|||||||||||++|+++++... ..+++|+|++|+.+|++|++|
T Consensus 81 ~S~~L~~~l~~Gd~v~v~gP~G~f~l~~-~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~~~e 159 (332)
T PRK10684 81 GSQWLTRDVKRGDYLWLSDAMGEFTCDD-KAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIFADE 159 (332)
T ss_pred chhHHHhcCCCCCEEEEeCCccccccCC-CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhhHHH
Confidence 999997 599999999999999998764 34578999999999999999999998765 579999999999999999999
Q ss_pred HHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHh---hhh
Q psy8246 434 LDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGM---ENK 509 (527)
Q Consensus 434 L~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l---~~~ 509 (527)
|++|+++++++++....+... ..+. ..+++.. ..+.+... .....+|+|||++||+++.+.|+++ .++
T Consensus 160 l~~l~~~~~~~~~~~~~~~~~--~~~~--~~grl~~----~~l~~~~~~~~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~ 231 (332)
T PRK10684 160 WRQLKQRYPQLNLTLVAENNA--TEGF--IAGRLTR----ELLQQAVPDLASRTVMTCGPAPYMDWVEQEVKALGVTADR 231 (332)
T ss_pred HHHHHHHCCCeEEEEEeccCC--CCCc--cccccCH----HHHHHhcccccCCEEEEECCHHHHHHHHHHHHHcCCCHHH
Confidence 999998877787765443211 0111 1234432 22333221 1235788999999999999999987 678
Q ss_pred cCCCCCCC
Q psy8246 510 MNPEIPPN 517 (527)
Q Consensus 510 m~~~~~~~ 517 (527)
+..|.+.+
T Consensus 232 i~~E~F~~ 239 (332)
T PRK10684 232 FFKEKFFT 239 (332)
T ss_pred eEeeccCC
Confidence 88888864
No 12
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.2e-33 Score=288.92 Aligned_cols=220 Identities=20% Similarity=0.297 Sum_probs=172.8
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC---CeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN---DVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~---g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
..|++++|++++.+++|++.|+|++|....+.|+||||+.+.++.. +..+.|+|||++.+. +.+.|+|+||+
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-----~~~~le~~IK~ 124 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-----TKGYFDIIVKR 124 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-----CCCeEEEEEEE
Confidence 3589999999999999999999998765556799999999876532 346789999999863 57899999999
Q ss_pred eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-------CCcEEEEEEeC
Q psy8246 351 YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-------RQSVQLVFFNR 423 (527)
Q Consensus 351 y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-------~~~v~L~~~~r 423 (527)
+++|.+|+||+++++||+|+|+||.|.|.+.. +..++++|||||||||||++|+++++... ..+|+|+|++|
T Consensus 125 ~~~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~-~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R 203 (325)
T PTZ00274 125 KKDGLMTNHLFGMHVGDKLLFRSVTFKIQYRP-NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNR 203 (325)
T ss_pred cCCCcccHHHhcCCCCCEEEEeCCeeecccCC-CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcC
Confidence 99999999999999999999999988876654 34579999999999999999999998752 35899999999
Q ss_pred CCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC---CCcEEEEcCchHHHHHH
Q psy8246 424 TEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS---NSLVYSQLNLPYAVAAV 499 (527)
Q Consensus 424 ~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~---~~~~~yiCGPp~m~~~v 499 (527)
+.+|++++++|++|+++++ +|+++...++.... .......+++...+ +.+.... ....+|+|||++|++++
T Consensus 204 ~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~-~~w~g~~G~V~~~l----l~~~~~~~~~~~~~vylCGPp~Mm~av 278 (325)
T PTZ00274 204 TERHILLKGLFDDLARRYSNRFKVYYTIDQAVEP-DKWNHFLGYVTKEM----VRRTMPAPEEKKKIIMLCGPDQLLNHV 278 (325)
T ss_pred CHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcc-cCCCCCCCccCHHH----HHHhcCCCccCCcEEEEeCCHHHHHHh
Confidence 9999999999999998765 78887665532110 00111234443322 2222211 22468899999999999
Q ss_pred HHHHH
Q psy8246 500 ADKMT 504 (527)
Q Consensus 500 ~~~L~ 504 (527)
.+.-.
T Consensus 279 ~~~~~ 283 (325)
T PTZ00274 279 AGTPM 283 (325)
T ss_pred cCCCc
Confidence 77744
No 13
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=2.6e-33 Score=296.30 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=187.6
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCeee--eeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDI--SKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~~~--~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
..|++++|++++.++++++.|+|+.+++. ...|+||||+.|+++.+|... +|+|||++.+ +.+.++|+||+
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p------~~~~l~~~Vk~ 225 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAP------NGKYYRISVKR 225 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCC------CCCeEEEEEEE
Confidence 35789999999999999999999987643 346999999999997666543 4999999876 56789999999
Q ss_pred eCCCCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchh
Q psy8246 351 YEDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDI 428 (527)
Q Consensus 351 y~~G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di 428 (527)
+++|.+|.||++ +++||+|.|+||+|.|.+.. ...++++|||||||||||++|+++++... ..+++|+|++|+.+|+
T Consensus 226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~-~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~ 304 (399)
T PRK13289 226 EAGGKVSNYLHDHVNVGDVLELAAPAGDFFLDV-ASDTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARNGGVH 304 (399)
T ss_pred CCCCeehHHHhhcCCCCCEEEEEcCccccccCC-CCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCChhhc
Confidence 999999999987 99999999999999998865 34679999999999999999999998765 6799999999999999
Q ss_pred hhHHHHHHHHhcCCCCeEeccCCCCCCcc-ccc-ccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 429 IWRDQLDTFASKNSKPSSPRNPSTEIKPL-KNI-ISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 429 ~~~~eL~~l~~~~~~~~~~~~~s~~~~~~-~g~-~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+++++|++|++++++|+++...++..... .+. ....+++ ..+.+.+........+|+|||++|++++.+.|++.
T Consensus 305 ~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i----~~~~l~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~ 380 (399)
T PRK13289 305 AFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLM----DLEWLEAWLPDPDADFYFCGPVPFMQFVAKQLLEL 380 (399)
T ss_pred hHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcc----cHHHHHhhCCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 99999999998888898876655432100 000 0012333 22234444432346788999999999999999887
Q ss_pred ---hhhcCCCCCCCC
Q psy8246 507 ---ENKMNPEIPPNN 518 (527)
Q Consensus 507 ---~~~m~~~~~~~~ 518 (527)
.+++..|.+.+.
T Consensus 381 Gv~~~~I~~E~F~~~ 395 (399)
T PRK13289 381 GVPEERIHYEFFGPA 395 (399)
T ss_pred CCCHHHeeeeccCCc
Confidence 677888877643
No 14
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=1.7e-33 Score=276.68 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=173.4
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCC----cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSP----MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~----~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
.++|++++.++++++.|+|+.+.. ....|+||||+.|+++ +....|+|||++.+. +.+.++|+||.+++
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~-----~~~~l~~~i~~~~~ 75 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIP--GTDTRRSYSLANTPN-----WDGRLEFLIRLLPG 75 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcC--CCccceecccCCCCC-----CCCEEEEEEEEcCC
Confidence 589999999999999999999875 2346999999999876 445689999999763 47899999999989
Q ss_pred CCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhH
Q psy8246 354 GLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWR 431 (527)
Q Consensus 354 G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~ 431 (527)
|.+|.+|++ +++||.|.|.||+|.|.+.. ...++++|||||||||||++|+++++... ..+++|+|++|+.+|+++.
T Consensus 76 G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~-~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~ 154 (236)
T cd06210 76 GAFSTYLETRAKVGQRLNLRGPLGAFGLRE-NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYL 154 (236)
T ss_pred CccchhhhhCcCCCCEEEEecCcceeeecC-CCCccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecCCHHHhhhH
Confidence 999999998 99999999999999998765 34578999999999999999999998766 5789999999999999999
Q ss_pred HHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 432 DQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 432 ~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++|++|++.+++|++....+++.....+ ..+++.+.+.+ .+.+. .....+|+|||++|++++++.|++.
T Consensus 155 ~~l~~l~~~~~~~~~~~~~s~~~~~~~~---~~g~~~~~l~~-~l~~~--~~~~~vyicGp~~m~~~~~~~l~~~ 223 (236)
T cd06210 155 DELKRLADSLPNLTVRICVWRPGGEWEG---YRGTVVDALRE-DLASS--DAKPDIYLCGPPGMVDAAFAAAREA 223 (236)
T ss_pred HHHHHHHHhCCCeEEEEEEcCCCCCcCC---ccCcHHHHHHH-hhccc--CCCcEEEEeCCHHHHHHHHHHHHHc
Confidence 9999999888888887665543211111 12333322211 11111 1235688999999999999999886
No 15
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=1.9e-33 Score=277.32 Aligned_cols=216 Identities=19% Similarity=0.267 Sum_probs=175.1
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC-CeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-DVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
+|++++.++++++.|+|+.+. ...|+|||||.|+++.. +...+|+|||++.+ +.+.++|+||++++|.+|+
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~------~~~~i~~~i~~~~~G~~s~ 72 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI--PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAP------YEENLEFYIILVPDGPLTP 72 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC--CCccCCCCeEEEeccCCCCCeeeecccccCCC------CCCeEEEEEEEecCCCCch
Confidence 478899999999999999865 34599999999999875 67789999999976 4589999999999999999
Q ss_pred hhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHH
Q psy8246 359 LLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDT 436 (527)
Q Consensus 359 ~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~ 436 (527)
+|+++++||.|.+. ||+|.|.+......++++|||||||||||++++++++... ..+++|+|++|+.+|++++++|++
T Consensus 73 ~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~ 152 (241)
T cd06195 73 RLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEA 152 (241)
T ss_pred HHhcCCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCCHHHhhhHHHHHH
Confidence 99999999999999 9999998765224689999999999999999999998655 579999999999999999999999
Q ss_pred HHhc-CCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc----CCCcEEEEcCchHHHHHHHHHHHHhh
Q psy8246 437 FASK-NSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN----SNSLVYSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 437 l~~~-~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~----~~~~~~yiCGPp~m~~~v~~~L~~l~ 507 (527)
++++ +++|++....+++.... ...+++...+....+.+... .....+|+|||++|++++++.|+++.
T Consensus 153 l~~~~~~~~~~~~~~s~~~~~~----~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G 224 (241)
T cd06195 153 LAKQYNGKFRYVPIVSREKENG----ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKG 224 (241)
T ss_pred HHhhcCCCEEEEEEECcCCccC----CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcC
Confidence 9877 67888876555433211 12344544433233333221 13467889999999999999998873
No 16
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.7e-33 Score=274.06 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=174.1
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHh
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~ 359 (527)
+|++++.++++++.|+|+.+......|+||||+.|+++..+....|+|||++.+. +.+.++|.||.+++|.+|.|
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-----~~~~l~~~vk~~~~G~~s~~ 76 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-----RPDSLSITVKRVPGGLVSNW 76 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-----CCCcEEEEEEEcCCCcchHH
Confidence 7899999999999999999876434599999999999877777789999999763 56789999999988999999
Q ss_pred hh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHH
Q psy8246 360 LC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTF 437 (527)
Q Consensus 360 L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l 437 (527)
|+ ++++||+|.|.||+|.|.+.. ...++++||||||||||+++|++++++.. ..+++|+|++|+.+|+++.++|+++
T Consensus 77 l~~~~~~G~~v~i~gP~G~f~~~~-~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l 155 (231)
T cd06215 77 LHDNLKVGDELWASGPAGEFTLID-HPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEEL 155 (231)
T ss_pred HHhcCCCCCEEEEEcCcceeEeCC-CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHHHHHHHH
Confidence 97 599999999999999998754 24689999999999999999999998766 5789999999999999999999999
Q ss_pred HhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 438 ASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+++++++++....++.... ......+++.. ..+.+... .....+|+|||++|++++++.|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~----~~l~~~~~~~~~~~v~icGp~~m~~~~~~~l~~~ 219 (231)
T cd06215 156 ARRHPNFRLHLILEQPAPG--AWGGYRGRLNA----ELLALLVPDLKERTVFVCGPAGFMKAVKSLLAEL 219 (231)
T ss_pred HHHCCCeEEEEEEccCCCC--cccccCCcCCH----HHHHHhcCCccCCeEEEECCHHHHHHHHHHHHHc
Confidence 9887788876555443211 00112233322 22333322 2235688999999999999999876
No 17
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=3.7e-33 Score=272.20 Aligned_cols=217 Identities=17% Similarity=0.246 Sum_probs=173.8
Q ss_pred EEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
++|++++.++++++.|+|+.+. .+.|.||||+.|+++.. ..|+|||++.+. +.+.++|+||.+++|.+|+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~--~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-----~~~~l~~~vk~~~~G~~s~ 70 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA--PLDFLAGQYLDLLLDDG---DKRPFSIASAPH-----EDGEIELHIRAVPGGSFSD 70 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC--CcccCCCCEEEEEcCCC---CceeeecccCCC-----CCCeEEEEEEecCCCccHH
Confidence 4799999999999999999876 34599999999998632 379999999863 4689999999999999999
Q ss_pred hhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHH
Q psy8246 359 LLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDT 436 (527)
Q Consensus 359 ~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~ 436 (527)
+|.+ +++||+|.|+||+|.|.+.. ...++++|||||||||||++++++++... ..+++|+|++|+.+|++++++|++
T Consensus 71 ~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 149 (224)
T cd06189 71 YVFEELKENGLVRIEGPLGDFFLRE-DSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEA 149 (224)
T ss_pred HHHHhccCCCEEEEecCCccEEecc-CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHHHHH
Confidence 9986 99999999999999988755 34689999999999999999999999876 678999999999999999999999
Q ss_pred HHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCC
Q psy8246 437 FASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPE 513 (527)
Q Consensus 437 l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~ 513 (527)
|+++.++|++....++......+ ..+++.+.+ ++.+.+.....+|+|||++|++++.+.|+++ .+.+..|
T Consensus 150 l~~~~~~~~~~~~~s~~~~~~~g---~~g~v~~~l----~~~~~~~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e 222 (224)
T cd06189 150 WAEAHPNFTYVPVLSEPEEGWQG---RTGLVHEAV----LEDFPDLSDFDVYACGSPEMVYAARDDFVEKGLPEENFFSD 222 (224)
T ss_pred HHHhCCCeEEEEEeCCCCcCCcc---ccccHHHHH----HhhccCccccEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 99877888887655543321111 123333222 1222222346788999999999999999887 4444443
No 18
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=4.1e-33 Score=272.55 Aligned_cols=218 Identities=20% Similarity=0.242 Sum_probs=175.8
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|++++.++++++.|+|+.+......|+||||+.|+++ +....|+|||++.+ ..+.|+|+||.+++|.+|
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~--~~~~~r~ysi~s~~------~~~~i~~~i~~~~~G~~s 74 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVP--GTDETRSYSFSSAP------GDPRLEFLIRLLPGGAMS 74 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeC--CCCcccccccccCC------CCCeEEEEEEEcCCCcch
Confidence 5899999999999999999998754456999999999976 44568999999976 448999999999999999
Q ss_pred Hhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 358 PLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 358 ~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
++|++ +++||.|.|+||+|.|.+.. ..++++|||||||||||++++++++... ..+++|+|++|+.+|+++.++|+
T Consensus 75 ~~l~~~l~~G~~v~v~gP~G~~~~~~--~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 152 (228)
T cd06209 75 SYLRDRAQPGDRLTLTGPLGSFYLRE--VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELDRLE 152 (228)
T ss_pred hhHHhccCCCCEEEEECCcccceecC--CCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHhccHHHHH
Confidence 99998 99999999999999987754 3478999999999999999999998776 56899999999999999999999
Q ss_pred HHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCC
Q psy8246 436 TFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNP 512 (527)
Q Consensus 436 ~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~ 512 (527)
+|++++++|++....+++... .+ ..+++...+.. .........+|+|||++|++++++.|+++ ...+..
T Consensus 153 ~l~~~~~~~~~~~~~s~~~~~-~~---~~g~v~~~~~~----~~~~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~ 224 (228)
T cd06209 153 ALAERLPGFSFRTVVADPDSW-HP---RKGYVTDHLEA----EDLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYY 224 (228)
T ss_pred HHHHhCCCeEEEEEEcCCCcc-CC---CcCCccHHHHH----hhccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEee
Confidence 999888888887665543210 01 12233322221 12222345688999999999999999887 344444
Q ss_pred C
Q psy8246 513 E 513 (527)
Q Consensus 513 ~ 513 (527)
|
T Consensus 225 E 225 (228)
T cd06209 225 E 225 (228)
T ss_pred e
Confidence 4
No 19
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=6.9e-33 Score=286.91 Aligned_cols=231 Identities=16% Similarity=0.203 Sum_probs=184.3
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
.....++|++++.+++|++.|+|+.+....+.|+|||||.|+++. + ..|+||+++.+. +.+.++|+||++++
T Consensus 100 ~~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~-~--~~R~ySias~p~-----~~~~l~~~ik~~~~ 171 (339)
T PRK07609 100 VKKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKD-G--KRRSYSIANAPH-----SGGPLELHIRHMPG 171 (339)
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCC-C--ceeeeecCCCCC-----CCCEEEEEEEecCC
Confidence 456789999999999999999999886555669999999999852 3 479999999763 45899999999999
Q ss_pred CCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhH
Q psy8246 354 GLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWR 431 (527)
Q Consensus 354 G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~ 431 (527)
|.+|+||++ +++||.|.|+||+|.|.+.. ...++++|||||||||||++|+++++..+ .++++|+|++|+.+|+++.
T Consensus 172 G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~-~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl~~~ 250 (339)
T PRK07609 172 GVFTDHVFGALKERDILRIEGPLGTFFLRE-DSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDLYLS 250 (339)
T ss_pred CccHHHHHHhccCCCEEEEEcCceeEEecC-CCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHhccH
Confidence 999999975 99999999999999998764 35679999999999999999999999876 5789999999999999999
Q ss_pred HHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hh
Q psy8246 432 DQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---EN 508 (527)
Q Consensus 432 ~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~ 508 (527)
++|++|++++++|+++...+++... .+.....+++...+. +.+.+.....+|+|||++|++++.+.|+++ ..
T Consensus 251 e~l~~~~~~~~~~~~~~~~s~~~~~-~~~~g~~G~v~~~~~----~~~~~~~~~~vy~CGp~~m~~~~~~~l~~~G~~~~ 325 (339)
T PRK07609 251 ALAEQWAEELPNFRYVPVVSDALDD-DAWTGRTGFVHQAVL----EDFPDLSGHQVYACGSPVMVYAARDDFVAAGLPAE 325 (339)
T ss_pred HHHHHHHHhCCCeEEEEEecCCCCC-CCccCccCcHHHHHH----hhcccccCCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 9999998888889987665543110 011112233433221 222222346788999999999999999987 57
Q ss_pred hcCCCCCCCC
Q psy8246 509 KMNPEIPPNN 518 (527)
Q Consensus 509 ~m~~~~~~~~ 518 (527)
++..|-+.++
T Consensus 326 ~i~~e~F~~~ 335 (339)
T PRK07609 326 EFFADAFTYA 335 (339)
T ss_pred HeEEeecccC
Confidence 7777777643
No 20
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=6.4e-33 Score=271.92 Aligned_cols=222 Identities=16% Similarity=0.227 Sum_probs=175.8
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
+++|++++.++++++.|+|+.+.+..+.|+||||+.|+++ +....|+|||++.+. +.+.|+|+||.+++|.+|
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~-----~~~~l~l~vk~~~~G~~s 74 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVP--GTEETRSFSMANTPA-----DPGRLEFIIKKYPGGLFS 74 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcC--CCCcccccccCCCCC-----CCCEEEEEEEECCCCchh
Confidence 4899999999999999999987655556999999999986 334789999999763 458999999999999999
Q ss_pred Hhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 358 PLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 358 ~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
.+|++ +++||+|.|.||+|.|.+.. ...++++|||||||||||+++++++...+ ..+++|+|++|+.++++++++|+
T Consensus 75 ~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 153 (232)
T cd06212 75 SFLDDGLAVGDPVTVTGPYGTCTLRE-SRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIA 153 (232)
T ss_pred hHHhhcCCCCCEEEEEcCcccceecC-CCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHHHHH
Confidence 99997 99999999999999998754 35689999999999999999999999876 56899999999999999999999
Q ss_pred HHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHHHHHHHHHh---hhhcC
Q psy8246 436 TFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAAVADKMTGM---ENKMN 511 (527)
Q Consensus 436 ~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~ 511 (527)
+++++.++|++....+++... .+.....+++.. .+.+.. +.....+|+|||++|++++.+.|+++ .+.+.
T Consensus 154 ~l~~~~~~~~~~~~~s~~~~~-~~~~~~~g~~~~-----~~~~~~~~~~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~ 227 (232)
T cd06212 154 ALGEKIPDFTFIPALSESPDD-EGWSGETGLVTE-----VVQRNEATLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQIF 227 (232)
T ss_pred HHHHhCCCEEEEEEECCCCCC-CCCcCCcccHHH-----HHHhhccCccCCEEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 999877788876554443210 011111233322 122222 21246788999999999999999987 34444
Q ss_pred CC
Q psy8246 512 PE 513 (527)
Q Consensus 512 ~~ 513 (527)
.|
T Consensus 228 ~e 229 (232)
T cd06212 228 YD 229 (232)
T ss_pred ec
Confidence 44
No 21
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=9.1e-33 Score=287.45 Aligned_cols=233 Identities=20% Similarity=0.337 Sum_probs=182.4
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCc--CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPM--FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~--~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
|+.++|++++.++++++.|+|+.+... .+.|+|||||.|+++.+|....|+||+++.+ +.+.|+|.||++++
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p------~~~~l~i~vk~~~~ 74 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAP------APGEIRVAVKKIPG 74 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCC------CCCcEEEEEEEeCC
Confidence 467899999999999999999987642 2459999999999987777788999999875 56789999999999
Q ss_pred CCchHhhh-cCCCCCEEEEeccccccccCCC-CCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhh
Q psy8246 354 GLLSPLLC-GLREGQELEVSSPEGKFDVGLI-GKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIW 430 (527)
Q Consensus 354 G~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~-~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~ 430 (527)
|.+|.||+ ++++||.|.|.||+|.|.+... ...++++|||||||||||++|+++++... ..+++|+|++|+.+|++|
T Consensus 75 G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~~~ 154 (352)
T TIGR02160 75 GLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTLVYGNRRTASVMF 154 (352)
T ss_pred CcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCCceEEEEEEeCCHHHHHH
Confidence 99999997 5999999999999999987542 12478999999999999999999998765 579999999999999999
Q ss_pred HHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHh--
Q psy8246 431 RDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGM-- 506 (527)
Q Consensus 431 ~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l-- 506 (527)
++||++|++.++ +|+++...+++.....+ ..+|+........+.++.. .....+|+|||++|++++++.|+++
T Consensus 155 ~~el~~l~~~~~~~~~~~~~~s~~~~~~~~---~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 155 AEELADLKDKHPQRFHLAHVLSREPREAPL---LSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGV 231 (352)
T ss_pred HHHHHHHHHhCcCcEEEEEEecCCCcCccc---ccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 999999987754 68877655543211001 1233321111223333322 1235788999999999999999987
Q ss_pred -hhhcCCCCCCC
Q psy8246 507 -ENKMNPEIPPN 517 (527)
Q Consensus 507 -~~~m~~~~~~~ 517 (527)
...+..|.+.+
T Consensus 232 ~~~~i~~E~F~~ 243 (352)
T TIGR02160 232 PAGRVHLELFYT 243 (352)
T ss_pred CHHHEEEEeccC
Confidence 56666666644
No 22
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=279.88 Aligned_cols=228 Identities=25% Similarity=0.388 Sum_probs=175.2
Q ss_pred CCCCceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCe----eeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 271 IPVSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDV----DISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 271 ~~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~----~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
.+...|+.++|++++.++++++.|+|+.+.+. .+.|+||||+.|+++..+. ...|+|||++.+. +.+.++
T Consensus 28 ~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-----~~~~i~ 102 (300)
T PTZ00319 28 LDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-----EKGYVD 102 (300)
T ss_pred cCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-----cCCEEE
Confidence 36677999999999999999999999986543 3459999999999986543 5789999999763 678999
Q ss_pred EEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCC--------------CCCccEEEEEecCCchhHH
Q psy8246 346 FLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLI--------------GKRNKLVLLAAGTGLTPMI 402 (527)
Q Consensus 346 l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~--------------~~~~~ivlIAgGtGItP~l 402 (527)
|+||.+ ++|.+|+||+++++||.|.|+||+|.|.+... ...++++|||||||||||+
T Consensus 103 ~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~ 182 (300)
T PTZ00319 103 FLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPML 182 (300)
T ss_pred EEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHH
Confidence 999998 67999999999999999999999999865421 1235899999999999999
Q ss_pred HHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh
Q psy8246 403 PVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL 480 (527)
Q Consensus 403 ~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~ 480 (527)
+|+++++... ..+++|+|++|+.+|++++++|++++ ..++++++...+++... ......+++...+.++.+....
T Consensus 183 sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~~~~~~~~~~~~~~--~~~~~~G~v~~~~l~~~~~~~~ 259 (300)
T PTZ00319 183 QIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPRFHVWYTLDREATP--EWKYGTGYVDEEMLRAHLPVPD 259 (300)
T ss_pred HHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCCEEEEEEECCCCCC--CcccccceeCHHHHHhhcCCcc
Confidence 9999998764 45899999999999999999999954 56688887665543211 0111234443332222222110
Q ss_pred ----cCCCcEEEEcCchHHHH-HHHHHHHHh
Q psy8246 481 ----NSNSLVYSQLNLPYAVA-AVADKMTGM 506 (527)
Q Consensus 481 ----~~~~~~~yiCGPp~m~~-~v~~~L~~l 506 (527)
+.....+|+|||++|++ ++.+.|+++
T Consensus 260 ~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 260 PQNSGIKKVMALMCGPPPMLQMAVKPNLEKI 290 (300)
T ss_pred ccccccCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 01235788999999999 578899877
No 23
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=2.1e-32 Score=270.21 Aligned_cols=214 Identities=22% Similarity=0.322 Sum_probs=176.0
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
....++|++++.+++++++|+|+.+.. ...|+||||+.|+++..|....|+|||++.+.. +.+.|+|+||.+++|
T Consensus 16 ~~~~~~v~~i~~~~~~~~~i~l~~~~~-~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~----~~~~l~~~ik~~~~G 90 (243)
T cd06216 16 RELRARVVAVRPETADMVTLTLRPNRG-WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQ----EDGTITLTVKAQPDG 90 (243)
T ss_pred ceeEEEEEEEEEcCCCcEEEEEecCCC-CCCcCCCceEEEEEEECCeEEEEEEeccCCCcC----CCCeEEEEEEEcCCC
Confidence 356799999999999999999997654 335999999999998778778999999997610 278899999999889
Q ss_pred CchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|.+|++ +++||+|.|.||+|.|.+.. ...++++||||||||||++++++++.... ..+++|+|++|+.+|+++.+
T Consensus 91 ~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~-~~~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~ 169 (243)
T cd06216 91 LVSNWLVNHLAPGDVVELSQPQGDFVLPD-PLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTREDVIFAD 169 (243)
T ss_pred cchhHHHhcCCCCCEEEEECCceeeecCC-CCCCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCChhhhHHHH
Confidence 99999986 99999999999999998755 24689999999999999999999998875 57899999999999999999
Q ss_pred HHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 433 QLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 433 eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|++|+++.++++++...+++ +. .+++. ...+.++.. .....+|+|||++|++++++.|++.
T Consensus 170 el~~l~~~~~~~~~~~~~s~~--~~------~g~~~----~~~l~~~~~~~~~~~vyvcGp~~m~~~~~~~l~~~ 232 (243)
T cd06216 170 ELRALAAQHPNLRLHLLYTRE--EL------DGRLS----AAHLDAVVPDLADRQVYACGPPGFLDAAEELLEAA 232 (243)
T ss_pred HHHHHHHhCCCeEEEEEEcCC--cc------CCCCC----HHHHHHhccCcccCeEEEECCHHHHHHHHHHHHHC
Confidence 999998777788877655543 11 12221 223333322 2345788999999999999999876
No 24
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=3.1e-32 Score=268.39 Aligned_cols=221 Identities=20% Similarity=0.308 Sum_probs=175.9
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcC--cccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMF--FYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~--~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
+.++|++++.++++++.|+|+.+.+.. +.|+|||||.|+++..|....|+||+++.+ +.+.|+|+|+.+++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~------~~~~l~~~i~~~~~G 75 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSP------GDDELRITVKRVPGG 75 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCC------CCCcEEEEEEEcCCC
Confidence 568999999999999999999986532 459999999999987677788999999875 445899999999999
Q ss_pred CchHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|.||. ++++||++.|.||+|.|.+......++++|||||||||||++++++++... ..+++|+|++|+.+|+++.+
T Consensus 76 ~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 155 (241)
T cd06214 76 RFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASVIFRE 155 (241)
T ss_pred ccchhHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEEEEeCCHHHhhHHH
Confidence 9999997 699999999999999998765224789999999999999999999998875 57899999999999999999
Q ss_pred HHHHHHhcC-CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 433 QLDTFASKN-SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 433 eL~~l~~~~-~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|++|++.. ++|.+....+++.....+ ..+++...+....+.++. ......+|+|||+.|++++.+.|++.
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~ 228 (241)
T cd06214 156 ELADLKARYPDRLTVIHVLSREQGDPDL---LRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLEL 228 (241)
T ss_pred HHHHHHHhCcCceEEEEEecCCCCCccc---ccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHc
Confidence 999998764 478776544443221111 123443222222233221 22346778999999999999999876
No 25
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.7e-32 Score=266.36 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=164.5
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCC-eeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC-CC
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVND-VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED-GL 355 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g-~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~-G~ 355 (527)
.++|++++.+++|++.|+|+.+.. +.|+||||+.|+++.++ ....|+|||++.+ +.+.++|+||++++ |.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~------~~~~l~~~vk~~~~~g~ 73 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG--YDFTPGQATEVAIDKPGWRDEKRPFTFTSLP------EDDVLEFVIKSYPDHDG 73 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc--CCCCCCCEEEEEeeCCCCCccccccccccCC------CCCeEEEEEEEcCCCCc
Confidence 478999999999999999998764 45999999999987654 3578999999976 56899999999875 78
Q ss_pred chHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHH
Q psy8246 356 LSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQL 434 (527)
Q Consensus 356 ~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL 434 (527)
+|.+|+++++||.|.++||+|.|.+. ++++|||||||||||++++++++..+ ..+++|+|++|+.+|++++++|
T Consensus 74 ~s~~l~~l~~G~~v~i~gP~G~~~~~-----~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el 148 (218)
T cd06196 74 VTEQLGRLQPGDTLLIEDPWGAIEYK-----GPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDIILKDEL 148 (218)
T ss_pred HhHHHHhCCCCCEEEEECCccceEec-----CceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecCCHHHHhhHHHH
Confidence 99999999999999999999998652 57999999999999999999999865 5689999999999999999999
Q ss_pred HHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 435 DTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 435 ~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++|. ++++....+++... +. ..+++. .+.+.++.......+|+|||++|++++.+.|+++
T Consensus 149 ~~l~----~~~~~~~~s~~~~~--~~--~~g~~~----~~~l~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~ 208 (218)
T cd06196 149 EKML----GLKFINVVTDEKDP--GY--AHGRID----KAFLKQHVTDFNQHFYVCGPPPMEEAINGALKEL 208 (218)
T ss_pred HHhh----cceEEEEEcCCCCC--Ce--eeeEEC----HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 9985 34554444443211 11 123332 2334444433345788999999999999999887
No 26
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=3.2e-32 Score=264.40 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=169.5
Q ss_pred EEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhc
Q psy8246 283 HQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCG 362 (527)
Q Consensus 283 ~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~ 362 (527)
+++.++++++.|+|+.++ .+.|.||||+.|+++..+....|+||+++.+. +.+.++|+||.+++|.+|+||++
T Consensus 2 ~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-----~~~~~~l~vk~~~~G~~s~~l~~ 74 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN--GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-----EEGELELTVKIVPGGPFSAWLHD 74 (223)
T ss_pred ceEEecCCeEEEEEecCC--CCCcCCCcEEEEEecCCCCcceeeeeccCCCC-----CCCeEEEEEEEeCCCchhhHHhc
Confidence 467889999999999876 44599999999999876677899999999763 45899999999988999999999
Q ss_pred CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHHHhcC
Q psy8246 363 LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFASKN 441 (527)
Q Consensus 363 l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l~~~~ 441 (527)
+++||+|.|.||+|.|.+.. ...++++||||||||||+++|++++.... ..+++|+|++|+.+|++++++|+++++..
T Consensus 75 ~~~G~~v~i~gP~G~~~~~~-~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~ 153 (223)
T cd00322 75 LKPGDEVEVSGPGGDFFLPL-EESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEELAKEG 153 (223)
T ss_pred CCCCCEEEEECCCcccccCc-ccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHHHHHhC
Confidence 99999999999999986543 36789999999999999999999999874 57999999999999999999999999877
Q ss_pred CCCeEeccCCCCCCcccccccccchhhhhhchhHHHh-hhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 442 SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELED-LLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 442 ~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~-l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++++++...++......+. .+++. ....+.. ........+|+|||++|++++++.|.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 154 PNFRLVLALSRESEAKLGP---GGRID---REAEILALLPDDSGALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred CCeEEEEEecCCCCCCCcc---cceee---HHHHHHhhcccccCCEEEEECCHHHHHHHHHHHHHc
Confidence 8888877666544321111 11110 0111111 2223456788999999999999999886
No 27
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=4.4e-32 Score=265.13 Aligned_cols=211 Identities=19% Similarity=0.278 Sum_probs=168.4
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
+++|++++.++++++.|+|+.+. .+.|+||||+.|+++ +....|+||+++.+. +.+.++|+||++++|.+|
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~--~~~~~pGQ~~~l~~~--~~~~~r~ysi~s~~~-----~~~~l~~~vk~~~~G~~s 72 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDR--PIAYKAGQYAELTLP--GLPAARSYSFANAPQ-----GDGQLSFHIRKVPGGAFS 72 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCC--CCCcCCCCEEEEEeC--CCCcccccccCCCCC-----CCCEEEEEEEECCCCcch
Confidence 47999999999999999999864 345999999999985 333789999999763 468899999999999999
Q ss_pred Hhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 358 PLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 358 ~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
++|.+ +++||+|.|.||+|.|.+.. ..++++|||||||||||++++++++... .++++++|++|+.+|+++.++|+
T Consensus 73 ~~l~~~l~~G~~v~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l~ 150 (227)
T cd06213 73 GWLFGADRTGERLTVRGPFGDFWLRP--GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALDEIA 150 (227)
T ss_pred HHHHhcCCCCCEEEEeCCCcceEeCC--CCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhccHHHHH
Confidence 99965 99999999999999998754 3479999999999999999999998876 56899999999999999999999
Q ss_pred HHHhc-CCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 436 TFASK-NSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 436 ~l~~~-~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+++++ .++|++....+++.... ......+++.+ .+.+.. .....+|+|||++|++++++.|+++
T Consensus 151 ~l~~~~~~~~~~~~~~s~~~~~~-~~~g~~g~v~~-----~l~~~~-~~~~~v~~CGp~~~~~~~~~~l~~~ 215 (227)
T cd06213 151 AIAARWRGRFRFIPVLSEEPADS-SWKGARGLVTE-----HIAEVL-LAATEAYLCGPPAMIDAAIAVLRAL 215 (227)
T ss_pred HHHHhccCCeEEEEEecCCCCCC-CccCCcccHHH-----HHHhhc-cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 99976 57888776554432110 00011222322 222222 2346788999999999999999886
No 28
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=2.1e-32 Score=289.83 Aligned_cols=232 Identities=15% Similarity=0.212 Sum_probs=181.3
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC-----------------------------Ceeeeee
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-----------------------------DVDISKP 326 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-----------------------------g~~~~R~ 326 (527)
.++++|++++.++++++.|+|+.++...+.|+|||||.|+++.. +....|+
T Consensus 133 ~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 212 (409)
T PRK05464 133 KWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRA 212 (409)
T ss_pred EEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeee
Confidence 34699999999999999999999865455699999999998631 2356899
Q ss_pred eeccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCC
Q psy8246 327 YTPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTG 397 (527)
Q Consensus 327 YT~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtG 397 (527)
||+++.+. +.+.++|+||++ ++|.+|.||+++++||.|.|.||+|.|.+.. ..++++|||||||
T Consensus 213 ySias~p~-----~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--~~~~ivlIAgGtG 285 (409)
T PRK05464 213 YSMANYPE-----EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD--TDAEMVFIGGGAG 285 (409)
T ss_pred eccCCCCC-----CCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcEecC--CCceEEEEEeccC
Confidence 99999863 567999999974 6799999999999999999999999997753 4689999999999
Q ss_pred chhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhH
Q psy8246 398 LTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVE 475 (527)
Q Consensus 398 ItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~ 475 (527)
||||++|++++++.. ..+++|+|++|+.+|+++.++|++++.++++|+++...+++... .+.....+++.+.+....
T Consensus 286 IaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~-~~~~g~~G~v~~~l~~~~ 364 (409)
T PRK05464 286 MAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPE-DNWTGYTGFIHNVLYENY 364 (409)
T ss_pred hhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCC-CCCCCccceeCHHHHHhh
Confidence 999999999887763 46899999999999999999999999888889887665543211 011112344444333333
Q ss_pred HHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCCCC
Q psy8246 476 LEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPEIP 515 (527)
Q Consensus 476 l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~~~ 515 (527)
+.+........+|+|||++|++++.+.|++. .+++..|.+
T Consensus 365 l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 407 (409)
T PRK05464 365 LKDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDF 407 (409)
T ss_pred hhhcCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEccc
Confidence 3222222346788999999999999999886 555555554
No 29
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=7.3e-32 Score=264.62 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=171.8
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
.+++|++++.++++++.|+|+.++. +.|+||||++|+++. ...|+||+++.+. +.+.|+|.||.+++|..
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~--~~~~pGQ~v~l~~~~---~~~r~ySias~p~-----~~~~l~~~v~~~~~~~~ 72 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAP--FSFRAGQYLMVVMGE---KDKRPFSIASTPR-----EKGFIELHIGASELNLY 72 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCC--CccCCCCEEEEEcCC---CcceeecccCCCC-----CCCcEEEEEEEcCCCcc
Confidence 4689999999999999999987653 459999999999853 3579999999763 56789999999887877
Q ss_pred hHhh-hcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHH
Q psy8246 357 SPLL-CGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQL 434 (527)
Q Consensus 357 S~~L-~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL 434 (527)
+.++ .++++||+|.|.||+|.|.+.. ...++++||||||||||+++|+++++..+ ..+++|+|++|+.+|++|.+||
T Consensus 73 ~~~~~~~l~~G~~v~v~gP~G~~~~~~-~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el 151 (232)
T PRK08051 73 AMAVMERILKDGEIEVDIPHGDAWLRE-ESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGREEDHLYDLDEL 151 (232)
T ss_pred hHHHHHHcCCCCEEEEEcCCCceEccC-CCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHhhhhHHH
Confidence 6555 5699999999999999987754 34578999999999999999999998876 6789999999999999999999
Q ss_pred HHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHH-HHh---hhhc
Q psy8246 435 DTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKM-TGM---ENKM 510 (527)
Q Consensus 435 ~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L-~~l---~~~m 510 (527)
++|++++++|+++...++......+ ..+++.+.+ ++.+.+.....+|+|||++|++++.+.| +++ +.++
T Consensus 152 ~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~v~~~l----~~~~~~~~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i 224 (232)
T PRK08051 152 EALALKHPNLHFVPVVEQPEEGWQG---KTGTVLTAV----MQDFGSLAEYDIYIAGRFEMAKIARELFCRERGAREEHL 224 (232)
T ss_pred HHHHHHCCCcEEEEEeCCCCCCccc---ceeeehHHH----HhhccCcccCEEEEECCHHHHHHHHHHHHHHcCCCHHHe
Confidence 9999887888887655543221111 123332222 2222222335788999999999999999 776 3444
Q ss_pred CCC
Q psy8246 511 NPE 513 (527)
Q Consensus 511 ~~~ 513 (527)
..|
T Consensus 225 ~~e 227 (232)
T PRK08051 225 FGD 227 (232)
T ss_pred ecc
Confidence 444
No 30
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=4.4e-32 Score=265.87 Aligned_cols=219 Identities=20% Similarity=0.245 Sum_probs=171.0
Q ss_pred EEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhh
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLL 360 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L 360 (527)
|++++.+++|++.|+|+.+.. ..|+||||+.|+++ +....|+|||++.+. +.+.++|+||.+++|.+|.+|
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~--~~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~-----~~~~~~~~vk~~~~G~~s~~l 71 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP--ADFLPGQYALLALP--GVEGARAYSMANLAN-----ASGEWEFIIKRKPGGAASNAL 71 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc--cccCCCCEEEEECC--CCCcccCccCCcCCC-----CCCEEEEEEEEcCCCcchHHH
Confidence 467889999999999998764 35999999999986 333679999998763 568999999999889999999
Q ss_pred hc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh--C-CCcEEEEEEeCCCchhhhHHHHHH
Q psy8246 361 CG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS--Q-RQSVQLVFFNRTEQDIIWRDQLDT 436 (527)
Q Consensus 361 ~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~--~-~~~v~L~~~~r~~~di~~~~eL~~ 436 (527)
++ +++||+|.|+||+|.|.+.. ...++++|||||||||||++|++++... . ..+++|+|++|+.+|++++++|++
T Consensus 72 ~~~~~~g~~v~v~gP~G~~~~~~-~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~ 150 (232)
T cd06190 72 FDNLEPGDELELDGPYGLAYLRP-DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSA 150 (232)
T ss_pred hhcCCCCCEEEEECCcccceecC-CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHHHHH
Confidence 87 79999999999999987654 3467999999999999999999999986 2 579999999999999999999999
Q ss_pred HHhcCCCCeEeccCCCCCCcc-cccccccchhhhhhchhHHHhhhc--CCCcEEEEcCchHHHHHHHHHHHHh----hhh
Q psy8246 437 FASKNSKPSSPRNPSTEIKPL-KNIISFLMRIRTTLKRVELEDLLN--SNSLVYSQLNLPYAVAAVADKMTGM----ENK 509 (527)
Q Consensus 437 l~~~~~~~~~~~~~s~~~~~~-~g~~~~~~ri~~~~~~~~l~~l~~--~~~~~~yiCGPp~m~~~v~~~L~~l----~~~ 509 (527)
|++..++|+++...+++.... .......+++.+ .+.+.+. .....+|+|||++|++++.+.|.+. .++
T Consensus 151 l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~-----~l~~~~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~ 225 (232)
T cd06190 151 LVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHE-----VVEATLGDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQ 225 (232)
T ss_pred HHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHH-----HHHhhccCCccccEEEEECCHHHHHHHHHHHHHhCCCChHh
Confidence 998877888776544332110 000011233322 2222222 2346788999999999999999876 455
Q ss_pred cCCCC
Q psy8246 510 MNPEI 514 (527)
Q Consensus 510 m~~~~ 514 (527)
+..|-
T Consensus 226 i~~e~ 230 (232)
T cd06190 226 IHFDR 230 (232)
T ss_pred eeecc
Confidence 55554
No 31
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=3.5e-32 Score=287.74 Aligned_cols=233 Identities=14% Similarity=0.198 Sum_probs=181.6
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC-----------------------------Ceeeeee
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-----------------------------DVDISKP 326 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-----------------------------g~~~~R~ 326 (527)
..+++|++++.++++++.++|+.++...+.|+||||+.|+++.. +....|+
T Consensus 129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 208 (405)
T TIGR01941 129 KWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRA 208 (405)
T ss_pred eeeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcccee
Confidence 34689999999999999999999865555799999999998632 2356799
Q ss_pred eeccCCCCCCCCCCCCEEEEEEEE---------eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCC
Q psy8246 327 YTPVEPLQAAPLSYSNTLTFLIKS---------YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTG 397 (527)
Q Consensus 327 YT~~s~~~~~~~~~~~~l~l~IK~---------y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtG 397 (527)
||+++.+. +.+.++|+||+ +++|.+|.||+++++||.|.|.||+|.|.+.. ..++++|||||||
T Consensus 209 ySias~p~-----~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~--~~~~lvlIAgGtG 281 (405)
T TIGR01941 209 YSMANYPA-----EKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD--TDAEMVFIGGGAG 281 (405)
T ss_pred ecCCCCCC-----CCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC--CCCCEEEEecCcC
Confidence 99999863 56899999997 57899999999999999999999999998754 4578999999999
Q ss_pred chhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhH
Q psy8246 398 LTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVE 475 (527)
Q Consensus 398 ItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~ 475 (527)
||||++|+++++... ..+++|+|++|+.+|+++.++|+++++++++|+++...++.... .+.....+++...+....
T Consensus 282 IaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~-~~~~g~~G~v~~~l~~~~ 360 (405)
T TIGR01941 282 MAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPE-DNWTGYTGFIHNVLYENY 360 (405)
T ss_pred cchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCcc-CCCCCccceeCHHHHHhh
Confidence 999999999877643 56899999999999999999999999888889887665542211 011112344443333322
Q ss_pred HHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCCCCC
Q psy8246 476 LEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPEIPP 516 (527)
Q Consensus 476 l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~~~~ 516 (527)
+.+........+|+|||++|++++.+.|+++ .+++..|.+.
T Consensus 361 l~~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F~ 404 (405)
T TIGR01941 361 LKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDDFG 404 (405)
T ss_pred hcccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeccC
Confidence 3322222346788999999999999999887 5566555543
No 32
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=1.3e-31 Score=261.04 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=168.0
Q ss_pred EEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhh
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLL 360 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L 360 (527)
|+++++++++++.|+|+.+.. ..|+||||+.|+++..+ ...|+|||++.+. +.+.++|+||.+++|.+|++|
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~--~~~~pGq~i~l~~~~~~-~~~r~ysi~s~~~-----~~~~~~~~i~~~~~G~~s~~l 72 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP--LPFWAGQYVNVTVPGRP-RTWRAYSPANPPN-----EDGEIEFHVRAVPGGRVSNAL 72 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC--CCcCCCceEEEEcCCCC-CcceeccccCCCC-----CCCEEEEEEEeCCCCcchHHH
Confidence 467899999999999998875 45999999999986432 3689999999763 458899999998889999999
Q ss_pred hc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHHH
Q psy8246 361 CG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFA 438 (527)
Q Consensus 361 ~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l~ 438 (527)
++ +++||.|.|.||+|.|.+.. ...++++|||||||||||++|++++.... ..+++|+|++|+.+|+++.++|++++
T Consensus 73 ~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l~~~~ 151 (224)
T cd06187 73 HDELKVGDRVRLSGPYGTFYLRR-DHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALA 151 (224)
T ss_pred hhcCccCCEEEEeCCccceEecC-CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHHHHHH
Confidence 98 99999999999999988754 34689999999999999999999999865 57999999999999999999999998
Q ss_pred hcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 439 SKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.+++++++....+++.....+ ..+++...+.+ ...+.....+|+|||++|++++++.|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~----~~~~~~~~~v~vcGp~~~~~~v~~~l~~~ 212 (224)
T cd06187 152 ARHPWLRVVPVVSHEEGAWTG---RRGLVTDVVGR----DGPDWADHDIYICGPPAMVDATVDALLAR 212 (224)
T ss_pred HhCCCeEEEEEeCCCCCccCC---CcccHHHHHHH----hccccccCEEEEECCHHHHHHHHHHHHHc
Confidence 887888876554443211011 12333322211 11122346788999999999999999886
No 33
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1.6e-31 Score=270.21 Aligned_cols=225 Identities=18% Similarity=0.215 Sum_probs=172.3
Q ss_pred eEEEEEEEEEEec-----CCEEEEEEEeCCCcCcccCCccEEEEEEEe----CCe-eeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 276 FNTMRLLHQEQVT-----HNVVLITLEYTSPMFFYVPVGHHVFIKFIV----NDV-DISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 276 ~~~~~v~~~~~vs-----~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~----~g~-~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
...++|++++.++ ++++.|+|+.+. .+.|.|||||.|.++. +|. ...|+|||++.+... ..+.+.++
T Consensus 8 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~-~~~~~~l~ 84 (286)
T cd06208 8 PLIGKVVSNTRLTGPDAPGEVCHIVIDHGG--KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGD-DGDGKTLS 84 (286)
T ss_pred CeEEEEEeceeccCCCCCcceEEEEEeCCC--cccccCCceEEEECCCcchhcCCCCCceeeEecCCcccc-CCCCCEEE
Confidence 4569999999999 699999999743 3469999999998642 122 347999999976210 00247899
Q ss_pred EEEEEeCC----------CCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh----
Q psy8246 346 FLIKSYED----------GLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS---- 411 (527)
Q Consensus 346 l~IK~y~~----------G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~---- 411 (527)
|+||+.++ |.+|.||+++++||.|.|.||+|.|.+.+....++++|||||||||||++|+++++..
T Consensus 85 l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 164 (286)
T cd06208 85 LCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD 164 (286)
T ss_pred EEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc
Confidence 99999865 9999999999999999999999997664423457899999999999999999999875
Q ss_pred -C-CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcE
Q psy8246 412 -Q-RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLV 486 (527)
Q Consensus 412 -~-~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~ 486 (527)
. ..+++|+|++|+.+|+++.++|++|+++++ +|+++...+++.....+ ..+++++.+.. ..+.+.+......
T Consensus 165 ~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g---~~g~v~~~i~~~~~~l~~~l~~~~~~ 241 (286)
T cd06208 165 YKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADG---GKMYVQDRIAEYAEEIWNLLDKDNTH 241 (286)
T ss_pred cCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCC---CceehhhHHHHhHHHHHHHHhcCCcE
Confidence 2 468999999999999999999999998754 78887766654321111 12344433332 2233334434457
Q ss_pred EEEcCchHHHHHHHHHHHHh
Q psy8246 487 YSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 487 ~yiCGPp~m~~~v~~~L~~l 506 (527)
+|+|||++|++++.+.|.++
T Consensus 242 vYiCGp~~m~~~v~~~L~~~ 261 (286)
T cd06208 242 VYICGLKGMEPGVDDALTSV 261 (286)
T ss_pred EEEeCCchHHHHHHHHHHHH
Confidence 88999999999999999986
No 34
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1e-31 Score=263.13 Aligned_cols=216 Identities=28% Similarity=0.463 Sum_probs=173.0
Q ss_pred EEEEEEEEecCCEEEEEEEeCCC-cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~-~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
++|++++.+++++..|+|+.+.. ....++|||||.|+++..+....|+|||++.+. +.+.++|+||.+++|.+|
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-----~~~~~~~~v~~~~~G~~s 75 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-----DKGYFDLLIKIYPGGKMS 75 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-----cCCEEEEEEEECCCCcch
Confidence 37899999999999999998764 234599999999999876777899999999763 466899999999899999
Q ss_pred HhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 358 PLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
.+|+++++||+|.|+||+|.|.+......++++||||||||||+++++++++... ..+++|+|++|+.+++++.++|+
T Consensus 76 ~~l~~~~~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~~~~l~ 155 (234)
T cd06183 76 QYLHSLKPGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELD 155 (234)
T ss_pred hHHhcCCCCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhhHHHHH
Confidence 9999999999999999999998765222279999999999999999999998763 47999999999999999999999
Q ss_pred HHHhc-CCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc---CCCcEEEEcCchHHHH-HHHHHHHHh
Q psy8246 436 TFASK-NSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN---SNSLVYSQLNLPYAVA-AVADKMTGM 506 (527)
Q Consensus 436 ~l~~~-~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~---~~~~~~yiCGPp~m~~-~v~~~L~~l 506 (527)
+++.. .+++++....++......+ ..+++.. ..+...+. .....+|+|||++|++ ++++.|++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~----~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~ 224 (234)
T cd06183 156 ELAKKHPDRFKVHYVLSRPPEGWKG---GVGFITK----EMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKEL 224 (234)
T ss_pred HHHHhCcccEEEEEEEcCCCcCCcc---ccceECH----HHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 99877 4678876555443211111 1233322 22333332 2346788999999999 999999875
No 35
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=273.77 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=171.6
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
+++|++++++++|++.|+|+.+. .+.|+||||+.|+++ + ...|+||+++.+. +.+.++|+||++++|.+|
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~--~~~~~~GQfv~l~~~--~-~~~R~ySias~p~-----~~~~l~~~I~~~~~G~~s 162 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPER--PLRYRAGQHLVLWTA--G-GVARPYSLASLPG-----EDPFLEFHIDCSRPGAFC 162 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCC--cCCcCCCCEEEEecC--C-CcccccccCcCCC-----CCCeEEEEEEEcCCCccc
Confidence 59999999999999999999754 346999999999874 3 3689999999763 568899999999999999
Q ss_pred HhhhcCCCCCEEEEecccc-ccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 358 PLLCGLREGQELEVSSPEG-KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~GP~G-~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
.+|+++++||+|.+.+|.| .|.+......++++|||||||||||++|++++++.+ ..+++|+|++|+.+|++++++|+
T Consensus 163 ~~l~~l~~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~ 242 (312)
T PRK05713 163 DAARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLAEPLA 242 (312)
T ss_pred hhhhcCCCCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHhhhHHHHH
Confidence 9999999999999999997 465553224579999999999999999999998876 57899999999999999999999
Q ss_pred HHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHHHHHHHHHh---hhhcC
Q psy8246 436 TFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAAVADKMTGM---ENKMN 511 (527)
Q Consensus 436 ~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~ 511 (527)
+|++++++|++....+.. +.. .+.++. ......+|+|||++|++++.+.|+++ .+++.
T Consensus 243 ~l~~~~~~~~~~~~~~~~-------------~~~-----~l~~~~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~ 304 (312)
T PRK05713 243 ALAGRHPQLSVELVTAAQ-------------LPA-----ALAELRLVSRQTMALLCGSPASVERFARRLYLAGLPRNQLL 304 (312)
T ss_pred HHHHHCCCcEEEEEECcc-------------hhh-----hhhhccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHee
Confidence 999888888887544321 111 111221 11236788999999999999999887 67677
Q ss_pred CCCCC
Q psy8246 512 PEIPP 516 (527)
Q Consensus 512 ~~~~~ 516 (527)
.|.+.
T Consensus 305 ~e~F~ 309 (312)
T PRK05713 305 ADVFL 309 (312)
T ss_pred ecccc
Confidence 76654
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.8e-31 Score=270.10 Aligned_cols=216 Identities=15% Similarity=0.242 Sum_probs=165.9
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCC---cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSP---MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~---~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
.++.++|++++++++|+..|+|++..+ ..+.|+||||+.|+++..+ .||||+++.+. +.+.|+|+||..
T Consensus 4 ~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-----~~~~l~l~Ik~~ 75 (289)
T PRK08345 4 ALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-----RKGFFELCIRRA 75 (289)
T ss_pred CceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-----CCCEEEEEEEeC
Confidence 467899999999999988888876443 2345999999999986433 37999998763 568999999974
Q ss_pred CCCCchHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchh
Q psy8246 352 EDGLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDI 428 (527)
Q Consensus 352 ~~G~~S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di 428 (527)
|.+|++|+++++||+|.|+||+|. |.+.. ...++++|||||||||||++|+++++... ..+++|+|++|+.+|+
T Consensus 76 --G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~-~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~ 152 (289)
T PRK08345 76 --GRVTTVIHRLKEGDIVGVRGPYGNGFPVDE-MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDL 152 (289)
T ss_pred --ChHHHHHHhCCCCCEEEEeCCCCCCCCccc-ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHh
Confidence 999999999999999999999998 65533 23468999999999999999999988765 4799999999999999
Q ss_pred hhHHHHHHHHhcCCCCeEeccCCCCCC--cc----ccccc--ccchhhhhhchhHHHh-hhcCCCcEEEEcCchHHHHHH
Q psy8246 429 IWRDQLDTFASKNSKPSSPRNPSTEIK--PL----KNIIS--FLMRIRTTLKRVELED-LLNSNSLVYSQLNLPYAVAAV 499 (527)
Q Consensus 429 ~~~~eL~~l~~~~~~~~~~~~~s~~~~--~~----~g~~~--~~~ri~~~~~~~~l~~-l~~~~~~~~yiCGPp~m~~~v 499 (527)
+|++||++|+++.++|+++...+++.. .. .++.. ..+++.. .+.+ ..+.....+|+|||++|++++
T Consensus 153 ~~~deL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~v~~-----~~~~~~~~~~~~~vyiCGP~~m~~~v 227 (289)
T PRK08345 153 LFYDELIKDLAEAENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTD-----LFREANTDPKNTYAAICGPPVMYKFV 227 (289)
T ss_pred hHHHHHHHHHhcCCCEEEEEEecCCCCCcCccccccccccccccCchhh-----hhhhcCCCccccEEEEECCHHHHHHH
Confidence 999999999887888888766554321 10 00000 0122211 1111 122233578899999999999
Q ss_pred HHHHHHh
Q psy8246 500 ADKMTGM 506 (527)
Q Consensus 500 ~~~L~~l 506 (527)
.+.|+++
T Consensus 228 ~~~L~~~ 234 (289)
T PRK08345 228 FKELINR 234 (289)
T ss_pred HHHHHHc
Confidence 9999876
No 37
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=2.7e-31 Score=271.03 Aligned_cols=223 Identities=13% Similarity=0.176 Sum_probs=169.4
Q ss_pred eEEEEEEEEEEec-----CCEEEEEEEeCCCcCcccCCccEEEEEEEe-----CCe-eeeeeeeccCCCCCCCCCCCCEE
Q psy8246 276 FNTMRLLHQEQVT-----HNVVLITLEYTSPMFFYVPVGHHVFIKFIV-----NDV-DISKPYTPVEPLQAAPLSYSNTL 344 (527)
Q Consensus 276 ~~~~~v~~~~~vs-----~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-----~g~-~~~R~YT~~s~~~~~~~~~~~~l 344 (527)
...++|++++.++ ++++.|+|+.+.. +.|.||||+.|.++. +|. ...|+|||+|.+..+. .+...|
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~--~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~-~~~~~l 100 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDD-FDGKTA 100 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecCCC--CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcC-CCCCEE
Confidence 4479999999999 9999999998754 459999999997652 122 2479999999862100 012379
Q ss_pred EEEEEEe-------------CCCCchHhhhcCCCCCEEEEeccccccccCCC-CCCccEEEEEecCCchhHHHHHHHHHH
Q psy8246 345 TFLIKSY-------------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLI-GKRNKLVLLAAGTGLTPMIPVINWSIQ 410 (527)
Q Consensus 345 ~l~IK~y-------------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~-~~~~~ivlIAgGtGItP~l~ll~~l~~ 410 (527)
+|+||+. ++|.+|.||+++++||.|.|+||+|.|.+.+. +..++++|||||||||||++|+++++.
T Consensus 101 el~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~ 180 (307)
T PLN03116 101 SLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFM 180 (307)
T ss_pred EEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHh
Confidence 9999987 68999999999999999999999999876331 345799999999999999999998876
Q ss_pred hC------CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhh---h
Q psy8246 411 SQ------RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL---L 480 (527)
Q Consensus 411 ~~------~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l---~ 480 (527)
.. ..+++|+|++|+.+|++|.+||++|+++++ +|+++...+++.....+. .+++.+.+.. .+.++ .
T Consensus 181 ~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~---~g~v~~~l~~-~~~~~~~~~ 256 (307)
T PLN03116 181 EDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGG---KMYVQDKIEE-YSDEIFKLL 256 (307)
T ss_pred hccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCC---ccchhhHHHH-HHHHHHhhh
Confidence 43 257999999999999999999999998865 788877666543221111 2233332222 12221 2
Q ss_pred cCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 481 NSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 481 ~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
. ....+|+|||++|++++.+.|.++
T Consensus 257 ~-~~~~vYiCGp~~mv~~v~~~L~~~ 281 (307)
T PLN03116 257 D-NGAHIYFCGLKGMMPGIQDTLKRV 281 (307)
T ss_pred c-CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 2 246788999999999999999887
No 38
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.98 E-value=4.7e-31 Score=256.85 Aligned_cols=207 Identities=21% Similarity=0.216 Sum_probs=164.3
Q ss_pred EEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhh
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLL 360 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L 360 (527)
|++++.++++++.|+|+.+.. ..|+|||||.|+++. ...|+|||++.+. +.+.++|+||.+++|.+|.+|
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~--~~~~pGQ~v~l~~~~---~~~r~ySi~s~~~-----~~~~~~~~i~~~~~G~~s~~l 70 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP--LPYLPGQYVNLRRAG---GLARSYSPTSLPD-----GDNELEFHIRRKPNGAFSGWL 70 (222)
T ss_pred CceeeecCCCEEEEEEecCCC--CCcCCCCEEEEEcCC---CCceeeecCCCCC-----CCCEEEEEEEeccCCccchHH
Confidence 467889999999999998754 459999999999853 3569999999863 447899999999889999999
Q ss_pred hc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHHH
Q psy8246 361 CG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFA 438 (527)
Q Consensus 361 ~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l~ 438 (527)
.+ +++||.|.|.||+|.|.+......++++|||||||||||++++++++..+ ..+++|+|++|+.+++++++||++|+
T Consensus 71 ~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~ 150 (222)
T cd06194 71 GEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLA 150 (222)
T ss_pred HhccCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHHHHH
Confidence 98 79999999999999987654235679999999999999999999998766 67899999999999999999999999
Q ss_pred hcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 439 SKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++++++++....++..... ... ..+++. ..+.. ......+|+|||++|++++++.|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-----~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~ 209 (222)
T cd06194 151 REHPNFRYIPCVSEGSQGD-PRV-RAGRIA-----AHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLA 209 (222)
T ss_pred HHCCCeEEEEEEccCCCCC-ccc-ccchhh-----hhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 8777888776555432110 000 001110 01111 12246788999999999999999886
No 39
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.98 E-value=6.5e-31 Score=271.78 Aligned_cols=224 Identities=19% Similarity=0.213 Sum_probs=172.4
Q ss_pred EEEEEEEEEEecC-----CEEEEEEEeCCCcCcccCCccEEEEEEEe---CCee-eeeeeeccCCCCCCCCCCCCEEEEE
Q psy8246 277 NTMRLLHQEQVTH-----NVVLITLEYTSPMFFYVPVGHHVFIKFIV---NDVD-ISKPYTPVEPLQAAPLSYSNTLTFL 347 (527)
Q Consensus 277 ~~~~v~~~~~vs~-----d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~---~g~~-~~R~YT~~s~~~~~~~~~~~~l~l~ 347 (527)
..++|++...++. +++.|+|+.+. .+.|.+||||.|..+. +|.. ..|+|||+|.+..+ .++.+.|+|+
T Consensus 91 ~~~~v~~n~~i~~~~~~~~v~~l~l~~~~--~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~-~~~~~~l~L~ 167 (367)
T PLN03115 91 YTGRCLLNTKITGDDAPGETWHMVFSTEG--EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGD-FGDSKTVSLC 167 (367)
T ss_pred eEEEEEeecccccCCCCCceEEEEEcCCC--CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCccc-CCCCCEEEEE
Confidence 5689999999977 89999998654 3559999999998752 2333 57999999976210 0135689999
Q ss_pred EEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC------
Q psy8246 348 IKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ------ 412 (527)
Q Consensus 348 IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~------ 412 (527)
||+. ..|.+|+||++|++||.|.|.||+|.|.+.+.+...+++|||||||||||++++++++...
T Consensus 168 Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~ 247 (367)
T PLN03115 168 VKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKF 247 (367)
T ss_pred EEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccC
Confidence 9974 3689999999999999999999999976543234568999999999999999999875432
Q ss_pred CCcEEEEEEeCCCchhhhHHHHHHHHhcC-CCCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEE
Q psy8246 413 RQSVQLVFFNRTEQDIIWRDQLDTFASKN-SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQ 489 (527)
Q Consensus 413 ~~~v~L~~~~r~~~di~~~~eL~~l~~~~-~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yi 489 (527)
..+++|||++|+.+|++|++||++|++++ .+|+++...+++.....|. .+++++.+.. +.+.++++.....+|+
T Consensus 248 ~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~---kgyVqd~i~e~~e~l~~~l~~~~~~vYi 324 (367)
T PLN03115 248 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGE---KMYIQTRMAEYAEELWELLKKDNTYVYM 324 (367)
T ss_pred CCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCc---ceeehhHHHHHHHHHHhhcccCCeEEEE
Confidence 24799999999999999999999998875 4899988887764322221 2344444432 2233344444567889
Q ss_pred cCchHHHHHHHHHHHHh
Q psy8246 490 LNLPYAVAAVADKMTGM 506 (527)
Q Consensus 490 CGPp~m~~~v~~~L~~l 506 (527)
|||++|++.|.++|.++
T Consensus 325 CGp~~M~~~V~~~l~~l 341 (367)
T PLN03115 325 CGLKGMEKGIDDIMVSL 341 (367)
T ss_pred eCCHHHHHHHHHHHHHH
Confidence 99999999999999998
No 40
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.97 E-value=9.2e-31 Score=264.87 Aligned_cols=213 Identities=16% Similarity=0.259 Sum_probs=169.9
Q ss_pred CCceEEEEEEEEEEec----CCEEEEEEEeCCC-----cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCE
Q psy8246 273 VSKFNTMRLLHQEQVT----HNVVLITLEYTSP-----MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNT 343 (527)
Q Consensus 273 ~~~~~~~~v~~~~~vs----~d~~~~~~~~p~~-----~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~ 343 (527)
...+++++|++++.++ ++++.|+|++++. ....|+|||||.|+. +|....|+|||++.+ ..+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~--~g~~~~R~YSias~p------~~g~ 113 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILP--PGSDVPRFYSLASSS------SDGF 113 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEec--CCCCCCceEecCCCC------CCCe
Confidence 4568889999999999 6999999998763 134599999999975 455678999999976 5689
Q ss_pred EEEEEEEeCCCCchHhhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEe
Q psy8246 344 LTFLIKSYEDGLLSPLLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFN 422 (527)
Q Consensus 344 l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~ 422 (527)
++|+||.+++|.+|.||+++++||+|.+. +|.|.|.+.. ..++++|||||||||||++|+++.. . ..+++|+|++
T Consensus 114 l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~~--~~~~lvlIAgGtGIaP~~s~l~~~~-~-~~~v~L~~g~ 189 (289)
T cd06201 114 LEICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPAK--GAAPVILIGAGTGIAPLAGFIRANA-A-RRPMHLYWGG 189 (289)
T ss_pred EEEEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccCCC--CCCCEEEEecCcCHHHHHHHHHhhh-c-cCCEEEEEEe
Confidence 99999999999999999999999999998 5888998743 4679999999999999999999863 2 3689999999
Q ss_pred CCCc-hhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhc--hhHHHhhhcCCCcEEEEcCchHHHHHH
Q psy8246 423 RTEQ-DIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLPYAVAAV 499 (527)
Q Consensus 423 r~~~-di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp~m~~~v 499 (527)
|+.+ |++|++||++|+++.++++++...+++.. .++ +++.+. ...+..+... ...+|+|||++|++++
T Consensus 190 r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~~--~g~------v~~~l~~~~~~l~~~~~~-~~~vyiCGp~~M~~~v 260 (289)
T cd06201 190 RDPASDFLYEDELDQYLADGRLTQLHTAFSRTPD--GAY------VQDRLRADAERLRRLIED-GAQIMVCGSRAMAQGV 260 (289)
T ss_pred cCcccchHHHHHHHHHHHcCCCceEEEEECCCCC--ccc------chhHHHHhHHHHHHHHHC-CcEEEEECCHHHHHHH
Confidence 9984 99999999999888777777665555321 122 221111 1223333332 4678899999999999
Q ss_pred HHHHHHh
Q psy8246 500 ADKMTGM 506 (527)
Q Consensus 500 ~~~L~~l 506 (527)
.+.|+++
T Consensus 261 ~~~L~~i 267 (289)
T cd06201 261 AAVLEEI 267 (289)
T ss_pred HHHHHHH
Confidence 9999997
No 41
>KOG0536|consensus
Probab=99.97 E-value=3e-32 Score=231.99 Aligned_cols=108 Identities=60% Similarity=1.070 Sum_probs=103.2
Q ss_pred CccccCCCCCCcchhhhhccCCCCCCCCCCCcccCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccc
Q psy8246 17 RNKTALKPGHSLMDWIRLGNSGVNLSGIQGRILVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMD 96 (527)
Q Consensus 17 ~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D 96 (527)
|+|+++.||+++|+|.+++.+++++++......++.+||++|++.+|||++|+|+|||||.||++||||.+.|++++|+|
T Consensus 37 R~K~~l~PG~s~mdW~rL~~s~~~lag~~~~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD 116 (145)
T KOG0536|consen 37 RTKVALAPGHSQMDWSRLTASGKNLAGVESPIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRD 116 (145)
T ss_pred cceeecCCCcchhhHHHHhccCcccccccCCCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcc
Confidence 69999999999999999999999999997333499999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCchhHHHhhhcCeeeEeCC
Q psy8246 97 ATELFNKVHPWVNYESILQKCIVGKMGS 124 (527)
Q Consensus 97 ~T~~f~~~h~~~~~~~~l~~~~vG~l~~ 124 (527)
+|..|+.+|.|.|.++||+.|+||.|.+
T Consensus 117 ~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 117 ATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred hHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 9999999999999999999999999864
No 42
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.97 E-value=6.7e-30 Score=253.92 Aligned_cols=206 Identities=20% Similarity=0.321 Sum_probs=162.5
Q ss_pred EEEEEEecCCEEEEEEEeCCCc--CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPM--FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~--~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
|++++.+++++..|+|+++.+. .+.|+||||+.|+++..+ .|+||+++.+. +.+.++|.||.. |.+|+
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-----~~~~l~~~Ik~~--G~~S~ 70 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-----RRGPLELTIRRV--GRVTE 70 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-----CCCeEEEEEEeC--ChhhH
Confidence 4678999999999999987653 356999999999987544 38999999763 468999999974 89999
Q ss_pred hhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHH
Q psy8246 359 LLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 359 ~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
+|+++++||+|.|.||+|. |.+.. ...++++||||||||||+++|+++++... ..+++|+|++|+.+|++++++|+
T Consensus 71 ~L~~l~~G~~v~i~gP~G~~f~~~~-~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~ 149 (253)
T cd06221 71 ALHELKPGDTVGLRGPFGNGFPVEE-MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELK 149 (253)
T ss_pred HHHcCCCCCEEEEECCcCCCccccc-ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHH
Confidence 9999999999999999999 54432 24689999999999999999999999763 47899999999999999999999
Q ss_pred HHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhh-hcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 436 TFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL-LNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 436 ~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l-~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|+++ ++|++....+++.....+ ..+++.+. +.+. .......||+|||++|++++.+.|++.
T Consensus 150 ~l~~~-~~~~~~~~~s~~~~~~~~---~~g~v~~~-----l~~~~~~~~~~~vyicGp~~mv~~~~~~L~~~ 212 (253)
T cd06221 150 EWAKR-SDVEVILTVDRAEEGWTG---NVGLVTDL-----LPELTLDPDNTVAIVCGPPIMMRFVAKELLKL 212 (253)
T ss_pred HHHhc-CCeEEEEEeCCCCCCccC---Cccccchh-----HHhcCCCcCCcEEEEECCHHHHHHHHHHHHHc
Confidence 99987 778876555443211111 12333222 2222 122346788999999999999999876
No 43
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.97 E-value=8.3e-30 Score=247.13 Aligned_cols=204 Identities=19% Similarity=0.286 Sum_probs=158.6
Q ss_pred ecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhh-cCCC
Q psy8246 287 VTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLC-GLRE 365 (527)
Q Consensus 287 vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~-~l~~ 365 (527)
.+.+++.|+|+.+... +.|+|||||.|+++..+....|+|||++.+. +.+.++|+||.+ |.+|++|. ++++
T Consensus 5 ~~~~~~~i~l~~~~~~-~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-----~~~~l~l~vk~~--G~~t~~l~~~l~~ 76 (216)
T cd06198 5 EVRPTTTLTLEPRGPA-LGHRAGQFAFLRFDASGWEEPHPFTISSAPD-----PDGRLRFTIKAL--GDYTRRLAERLKP 76 (216)
T ss_pred EecceEEEEEeeCCCC-CCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-----CCCeEEEEEEeC--ChHHHHHHHhCCC
Confidence 4567888999876643 4599999999999765567889999999763 557999999985 88999999 7999
Q ss_pred CCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCC
Q psy8246 366 GQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKP 444 (527)
Q Consensus 366 Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~ 444 (527)
||.|.|+||+|.|.+.. ..++++||||||||||+++++++++... ..+++|+|++|+.+|++|+++|++|.++. ++
T Consensus 77 G~~v~i~gP~G~~~~~~--~~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~~ 153 (216)
T cd06198 77 GTRVTVEGPYGRFTFDD--RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAA-GV 153 (216)
T ss_pred CCEEEEECCCCCCcccc--cCceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhc-Ce
Confidence 99999999999998765 3689999999999999999999998766 57999999999999999999999998776 66
Q ss_pred eEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCC
Q psy8246 445 SSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPE 513 (527)
Q Consensus 445 ~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~ 513 (527)
.++...+... +....... . . ..........+|+|||+.|++++++.|++. .+++..|
T Consensus 154 ~~~~~~~~~~----~~~~~~~~----~-~---~~~~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E 213 (216)
T cd06198 154 VLHVIDSPSD----GRLTLEQL----V-R---ALVPDLADADVWFCGPPGMADALEKGLRALGVPARRFHYE 213 (216)
T ss_pred EEEEEeCCCC----cccchhhh----h-h---hcCCCcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchh
Confidence 6655433221 11000000 0 0 111122346788999999999999999886 4444444
No 44
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=1.3e-29 Score=251.26 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=170.8
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|.+++.+++++++++|+.+... +.++|||||.|+.+. ...||||+++.+. +.+.++|.|+++..|.+|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~-~~~~pGQfv~l~~~~---~~~~P~si~~~~~-----~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA-LTFKPGQFVMLRVPG---GVRRPYSLASAPD-----DKGELELHIRVYEVGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc-cccCCCcEEEEEeCC---CcEEEeeeccCCC-----cCCcEEEEEEEEeCChHH
Confidence 5899999999999999999998876 679999999999974 6789999999874 678999999999999999
Q ss_pred HhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHH
Q psy8246 358 PLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDT 436 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~ 436 (527)
.++..+++||.|.|+||+|++.... +..+++++||||||++|++++++++.+.+ ..+|+++|++|+++|+++.++|++
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~~-~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~ 158 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLRE-KIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEE 158 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCcccc-ccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHH
Confidence 9999999999999999999966554 24556999999999999999999999864 579999999999999999999999
Q ss_pred HHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHhh
Q psy8246 437 FASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 437 l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l~ 507 (527)
++.+ +++...+.+|.+.+|+. ..+.+.++...+...+|+|||+.|++++.+.+.+..
T Consensus 159 ~~~~----~~~~~~~~~~~G~~G~v----------~~~~~~~~~~~~~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 159 LAEK----EVHPVTDDGWKGRKGFV----------TTDVLKELLDLEVDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred hhcC----cEEEEECCCCCccCcce----------eHHHHhhhccccCCEEEEECCHHHHHHHHHHHHhcC
Confidence 9865 34444445565544432 112333444334466779999999999999998873
No 45
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.97 E-value=1.3e-29 Score=253.62 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=162.6
Q ss_pred CCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC---------CCchHh
Q psy8246 289 HNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED---------GLLSPL 359 (527)
Q Consensus 289 ~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~---------G~~S~~ 359 (527)
++++.|+|+.+.+....|+||||+.|+++ +....|+|||++.+.. ..+.++|+||..+. |.+|.+
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySias~p~~----~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~ 88 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPP--NPLQPRYYSIASSPDV----DPGEVHLCVRVVSYEAPAGRIRKGVCSNF 88 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecC--CCCCCeeEeecCCCCC----CCCEEEEEEEEEEEecCCCCeeccchhHH
Confidence 47889999988534456999999999875 4556899999998631 35899999999755 999999
Q ss_pred hhcCCCCCEEEEecccc-ccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh----C-CCcEEEEEEeCCC-chhhhHH
Q psy8246 360 LCGLREGQELEVSSPEG-KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS----Q-RQSVQLVFFNRTE-QDIIWRD 432 (527)
Q Consensus 360 L~~l~~Gd~v~i~GP~G-~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~----~-~~~v~L~~~~r~~-~di~~~~ 432 (527)
|+++++||.|.|.||+| .|.+.. +..++++|||||||||||++|+++++.. . ..+++|+|++|+. +|+++.+
T Consensus 89 L~~lk~Gd~v~v~~p~G~~f~l~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~d 167 (267)
T cd06182 89 LAGLQLGAKVTVFIRPAPSFRLPK-DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYRE 167 (267)
T ss_pred HhhCCCCCEEEEEEecCCcccCCC-CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHH
Confidence 99999999999999999 799865 3468999999999999999999999873 2 5799999999999 9999999
Q ss_pred HHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhc--hhHHHhhhcCCCcEEEEcCchH-HHHHHHHHHHHh
Q psy8246 433 QLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLPY-AVAAVADKMTGM 506 (527)
Q Consensus 433 eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp~-m~~~v~~~L~~l 506 (527)
+|++|+++..+|+++...+++.... .+++.+.+. .+.+.+++.. ...||+|||+. |++++.+.|.++
T Consensus 168 el~~~~~~~~~~~~~~~~S~~~~~~------~~~v~~~l~~~~~~l~~~l~~-~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 168 ELQEALKDGALTRLDVAFSREQAEP------KVYVQDKLKEHAEELRRLLNE-GAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred HHHHHHhCCCcceEEEEEccCCCCC------ceehHHHHHHhHHHHHHHHhc-CCEEEEECCcccchHHHHHHHHHH
Confidence 9999998777888887777654321 122222221 1223333432 34788999999 999999999998
No 46
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.97 E-value=2e-29 Score=251.81 Aligned_cols=202 Identities=15% Similarity=0.229 Sum_probs=157.1
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
+++|+++++++++++.|+|+.+ ..|+||||+.|+++..+ .|+||+++. +.+.++|+||.. |.+|
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~----~~~~pGQfi~l~~~~~~---~~pySi~~~-------~~~~~~~~Ik~~--G~~S 72 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD----GPVKPGQFFEVSLPKVG---EAPISVSDY-------GDGYIDLTIRRV--GKVT 72 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC----CCCCCCceEEEEeCCCC---cceeeccCC-------CCCEEEEEEEeC--Cchh
Confidence 4899999999999999999975 25899999999987443 389999875 356899999975 9999
Q ss_pred HhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHH
Q psy8246 358 PLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQL 434 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL 434 (527)
++|+++++||+|.|+||+|. |.+.. ...++++|||||||||||++++++++... ..+++|+|++|+.+|++++++|
T Consensus 73 ~~L~~l~~Gd~v~v~gP~G~~f~~~~-~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~el 151 (263)
T PRK08221 73 DEIFNLKEGDKLFLRGPYGNGFPVDT-YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKEDL 151 (263)
T ss_pred hHHHhCCCCCEEEEECCCCCCcccCc-cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHH
Confidence 99999999999999999998 77654 34579999999999999999999998764 3699999999999999999999
Q ss_pred HHHHhcCCCCeEecc-CCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 435 DTFASKNSKPSSPRN-PSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 435 ~~l~~~~~~~~~~~~-~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++|+++. ++.+... ....|.+ ..+++...+.+.. +.+.....+|+|||++|++++.+.|+++
T Consensus 152 ~~~~~~~-~~~~~~~~~~~~~~~------~~G~v~~~l~~~~---~~~~~~~~vylCGp~~mv~~~~~~L~~~ 214 (263)
T PRK08221 152 KRWREKI-NLILTLDEGEEGYRG------NVGLVTKYIPELT---LKDIDNMQVIVVGPPIMMKFTVLEFLKR 214 (263)
T ss_pred HHHhhcC-cEEEEecCCCCCCcc------CccccChhhHhcc---CCCcCCeEEEEECCHHHHHHHHHHHHHc
Confidence 9998653 2333221 1111211 1234432221100 1122356789999999999999999876
No 47
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.97 E-value=3.4e-29 Score=247.39 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=155.4
Q ss_pred EEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhh
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLL 360 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L 360 (527)
|++++.++++++.|+|+.|.. ...|+||||++|+++..+....|+||+++.+. +.+.++|+||.. |.+|++|
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-----~~~~l~l~i~~~--G~~t~~l 72 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA-ARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-----EEGTISLLVEIR--GPKTKLI 72 (243)
T ss_pred CceEEEecCCEEEEEEEccch-hhcCCCCCeEEEecCCCCCceeeeeEeeecCC-----CCCEEEEEEEEc--CchHHHH
Confidence 467899999999999998754 34599999999998654556789999999763 578999999974 8899999
Q ss_pred hcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHHhc
Q psy8246 361 CGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASK 440 (527)
Q Consensus 361 ~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~~ 440 (527)
.++++||+|.|+||+|+|.... ...++++|||||||||||++|++++...+ .+++|+|++|+.+|+++.++|+++.
T Consensus 73 ~~~~~G~~l~i~gP~G~~~~~~-~~~~~~lliagGtGiap~~~~l~~~~~~~-~~v~l~~~~r~~~d~~~~~el~~~~-- 148 (243)
T cd06192 73 AELKPGEKLDVMGPLGNGFEGP-KKGGTVLLVAGGIGLAPLLPIAKKLAANG-NKVTVLAGAKKAKEEFLDEYFELPA-- 148 (243)
T ss_pred HhCCCCCEEEEEccCCCCCccC-CCCCEEEEEeCcccHHHHHHHHHHHHHCC-CeEEEEEecCcHHHHHHHHHHHhhc--
Confidence 9999999999999999976544 24679999999999999999999998765 7999999999999999999999873
Q ss_pred CCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 441 NSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 441 ~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.+.+.. ....+.+. .+++... ...+ .......+|+|||++|++++++.|+++
T Consensus 149 --~~~~~~-~~~~~~~~------~g~v~~~--~~~~---~~~~~~~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 149 --DVEIWT-TDDGELGL------EGKVTDS--DKPI---PLEDVDRIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred --CeEEEE-ecCCCCcc------ceeechh--hhhh---hcccCCEEEEECCHHHHHHHHHHHHhh
Confidence 222222 12223222 2222211 0011 111234688999999999999999876
No 48
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.97 E-value=7e-29 Score=262.11 Aligned_cols=220 Identities=18% Similarity=0.237 Sum_probs=165.1
Q ss_pred EEEEEEEEEEec-----CCEEEEEEEeCCCcCcccCCccEEEEEEEe---CCe-eeeeeeeccCCCCCCCCCCCCEEEEE
Q psy8246 277 NTMRLLHQEQVT-----HNVVLITLEYTSPMFFYVPVGHHVFIKFIV---NDV-DISKPYTPVEPLQAAPLSYSNTLTFL 347 (527)
Q Consensus 277 ~~~~v~~~~~vs-----~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~---~g~-~~~R~YT~~s~~~~~~~~~~~~l~l~ 347 (527)
..++|++++.++ ++++.|+|+.++. .+.|.|||||.|+++. .|. ...|+|||++.+..+ .+..+.|+|+
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~-~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~-~~~~~~l~l~ 220 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSH-PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGE-RPGYNNLALT 220 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCC-cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCcc-CCCCCEEEEE
Confidence 569999999995 4999999998653 3459999999998763 233 367999999975210 0123579999
Q ss_pred EEEeC--------CCCchHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHh---C-CC
Q psy8246 348 IKSYE--------DGLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS---Q-RQ 414 (527)
Q Consensus 348 IK~y~--------~G~~S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~---~-~~ 414 (527)
||+++ +|.+|+||+++++||+|.|+||+|. |.+.. ...++++|||||||||||++|++++... + ..
T Consensus 221 Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~-~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~ 299 (411)
T TIGR03224 221 VKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN-HPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGG 299 (411)
T ss_pred EEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCC-CCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCC
Confidence 99985 5999999999999999999999998 54433 2357999999999999999999998763 2 47
Q ss_pred cEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCc
Q psy8246 415 SVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNL 492 (527)
Q Consensus 415 ~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGP 492 (527)
+++|+|++|+.+|++|.++|++|.+.+.++++ ..++..... .+++++.+.. ..+.+++......+|+|||
T Consensus 300 ~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~--~~sr~~~~~------~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp 371 (411)
T TIGR03224 300 KLMLFFGARTKEELPYFGPLQKLPKDFIDINF--AFSRTPEQP------KRYVQDAIRERAADVAALLKDPNTYIYICGL 371 (411)
T ss_pred CEEEEEecCccccchHHHHHHHHHhcCceEEE--EeccCCccC------cccHhhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 99999999999999999999999865544443 334432211 2333333321 2233334333467889999
Q ss_pred hHHHHHHHHHHHHhh
Q psy8246 493 PYAVAAVADKMTGME 507 (527)
Q Consensus 493 p~m~~~v~~~L~~l~ 507 (527)
++|++++.+.|.++.
T Consensus 372 ~~M~~~v~~~L~~~~ 386 (411)
T TIGR03224 372 KGMEEGVLDAFRDVC 386 (411)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998873
No 49
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.97 E-value=3.3e-29 Score=250.00 Aligned_cols=202 Identities=17% Similarity=0.257 Sum_probs=156.7
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|+++.+++++++.|+|..+ ..|+||||+.|+++..+ .|+||+++. +.+.++|+||.+ |.+|
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~----~~~~pGQ~v~l~~~~~~---~~pySi~~~-------~~~~l~~~Vk~~--G~~S 70 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD----GPVKPGQFFEVSLPKYG---EAPISVSGI-------GEGYIDLTIRRV--GKVT 70 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC----CCCCCCcEEEEEecCCC---ccceecCCC-------CCCeEEEEEEeC--chhh
Confidence 4899999999999999999764 34899999999987533 489999873 467899999985 8999
Q ss_pred HhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHH
Q psy8246 358 PLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQL 434 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL 434 (527)
.+|+++++||+|.|+||+|. |.+.. ...++++|||||||||||++|++++++.. ..+++|+|++|+.+|+++++||
T Consensus 71 ~~L~~l~~Gd~v~i~gP~G~~f~~~~-~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~eL 149 (261)
T TIGR02911 71 DEVFTLKEGDNLFLRGPYGNGFDVDN-YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDI 149 (261)
T ss_pred HHHHcCCCCCEEEEecCCCCCcccCc-cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHHH
Confidence 99999999999999999999 76654 34679999999999999999999998764 4689999999999999999999
Q ss_pred HHHHhcCCCCeEeccCC-CCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 435 DTFASKNSKPSSPRNPS-TEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 435 ~~l~~~~~~~~~~~~~s-~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++|+.+. ++.+..... ..+.+ ..+++...+.... +.+.....+|+|||++|++++++.|++.
T Consensus 150 ~~l~~~~-~~~~~~~~~~~~~~~------~~g~v~~~l~~~~---~~~~~~~~v~lCGp~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 150 AEWKGNI-NLTLTLDEAEEDYKG------NIGLVTKYIPELT---LKDIEEVQAIVVGPPIMMKFTVQELLKK 212 (261)
T ss_pred HHHHhcC-cEEEEEcCCCCCCcC------CeeccCHhHHhcc---CCCccceEEEEECCHHHHHHHHHHHHHc
Confidence 9998653 344333211 11211 2233332221111 1122245788999999999999999886
No 50
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.97 E-value=4.9e-29 Score=240.70 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=158.7
Q ss_pred EEEEecCCEEEEEEEeCCCcCc-ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC-chHhh
Q psy8246 283 HQEQVTHNVVLITLEYTSPMFF-YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL-LSPLL 360 (527)
Q Consensus 283 ~~~~vs~d~~~~~~~~p~~~~~-~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~-~S~~L 360 (527)
+++.++++++.|+|+.+....+ .|+||||+.|+++. ...|+|||++.+. +.+.++|+||.+++|. +|.||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-----~~~~l~~~v~~~~~g~~~s~~l 73 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-----DRDRYRIAVLREPASRGGSRYM 73 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-----CCCEEEEEEEeccCCCchHHHH
Confidence 5789999999999999876643 59999999999863 4679999999763 4589999999998765 89999
Q ss_pred hc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHHh
Q psy8246 361 CG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFAS 439 (527)
Q Consensus 361 ~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~ 439 (527)
.+ +++||+|.|.||+|.|.+.. ..++++||||||||||++++++++.+.. .+++|+|++|+.+|+++.++|++++
T Consensus 74 ~~~~~~Gd~v~i~gP~g~f~~~~--~~~~~v~ia~GtGiap~~~il~~~~~~~-~~v~l~~~~r~~~~~~~~~~l~~~~- 149 (211)
T cd06185 74 HELLRVGDELEVSAPRNLFPLDE--AARRHLLIAGGIGITPILSMARALAARG-ADFELHYAGRSREDAAFLDELAALP- 149 (211)
T ss_pred HhcCCCCCEEEEcCCccCCcCCC--CCCcEEEEeccchHhHHHHHHHHHHhCC-CCEEEEEEeCCCcchhHHHHHhhhc-
Confidence 76 89999999999999998754 4679999999999999999999998765 7899999999999999999999987
Q ss_pred cCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh---hhhcCCC
Q psy8246 440 KNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM---ENKMNPE 513 (527)
Q Consensus 440 ~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l---~~~m~~~ 513 (527)
..++++.... +. +. ..+ .+.+.+.. ....+|+|||+.|++++++.|++. .+++..|
T Consensus 150 -~~~~~~~~~~--~~----~~----~~~-----~~~~~~~~--~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e 208 (211)
T cd06185 150 -GDRVHLHFDD--EG----GR----LDL-----AALLAAPP--AGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFE 208 (211)
T ss_pred -CCcEEEEECC--CC----Cc----cCH-----HHHhccCC--CCCEEEEECCHHHHHHHHHHHHHcCCChhheEee
Confidence 3456655321 11 11 011 11122211 246788999999999999999887 3444444
No 51
>PRK05802 hypothetical protein; Provisional
Probab=99.97 E-value=6.6e-29 Score=254.02 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=161.9
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
..+..+.++|++++.++++++.|+|+.|.... ..++|||||+|+++..+....||||+++.+. +.+.|+|+||+
T Consensus 60 ~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-----~~g~l~l~ik~ 134 (320)
T PRK05802 60 EGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-----EENIIKVAIEI 134 (320)
T ss_pred CccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-----CCCEEEEEEEe
Confidence 44556789999999999999999999876422 2379999999998765556789999998763 67899999998
Q ss_pred eCCCCchHhhhcCCCCCEEEEeccccc--cccCC--CCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCc
Q psy8246 351 YEDGLLSPLLCGLREGQELEVSSPEGK--FDVGL--IGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQ 426 (527)
Q Consensus 351 y~~G~~S~~L~~l~~Gd~v~i~GP~G~--f~~~~--~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~ 426 (527)
.|.+|++|+++++||+|.|+||+|+ |.+.. ....+++++||||+||||+++++++++.++ .+++|+|++|+.+
T Consensus 135 --~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-~~v~li~g~r~~~ 211 (320)
T PRK05802 135 --RGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-NKIIVIIDKGPFK 211 (320)
T ss_pred --cChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-CcEEEEEeCCCHH
Confidence 5999999999999999999999965 65531 123568999999999999999999998876 6899999999999
Q ss_pred hhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC-CCcEEEEcCchHHHHHHHHHHHH
Q psy8246 427 DIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS-NSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 427 di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~-~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
|++++++|++++.+...+++. +.... +. ...+ .+.+++.. ....+|+|||+.|++++.+.|.+
T Consensus 212 ~~~~~~el~~~~~~~~~~~~~---ddG~~---~~-~~~g---------~v~~~l~~~~~~~vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 212 NNFIKEYLELYNIEIIELNLL---DDGEL---SE-EGKD---------ILKEIIKKEDINLIHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred HHHHHHHHHHhhCceEEEEec---ccCCC---Cc-cccc---------hHHHHhcCCCCCEEEEECCHHHHHHHHHHHhh
Confidence 999999999987542222211 11110 00 0011 12222221 12567899999999999999987
Q ss_pred h
Q psy8246 506 M 506 (527)
Q Consensus 506 l 506 (527)
+
T Consensus 276 ~ 276 (320)
T PRK05802 276 L 276 (320)
T ss_pred h
Confidence 4
No 52
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.96 E-value=8.4e-29 Score=245.05 Aligned_cols=199 Identities=19% Similarity=0.260 Sum_probs=156.5
Q ss_pred EEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEe-CCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHh
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIV-NDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~ 359 (527)
|++++.++++++.|+|+.+.. ...|+||||+.|+++. .+....|+||+++.+. +.+.++|+||.+ |.+|.+
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-----~~~~l~l~v~~~--G~~s~~ 72 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI-AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-----EEGTITLLYKVV--GKGTRL 72 (246)
T ss_pred CcceeEecCCeEEEEEeCcch-hccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-----CCCEEEEEEEEE--CcchHH
Confidence 467899999999999998763 3459999999999975 3346789999999763 578999999986 888999
Q ss_pred hhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHH
Q psy8246 360 LCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFA 438 (527)
Q Consensus 360 L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~ 438 (527)
|+++++||+|.|.||+|. |.+.. ..++++||||||||||+++|++++.... .+++|+|++|+.+|++++++|++|.
T Consensus 73 l~~l~~Gd~v~i~gP~G~~~~~~~--~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~v~l~~~~r~~~d~~~~~eL~~l~ 149 (246)
T cd06218 73 LSELKAGDELDVLGPLGNGFDLPD--DDGKVLLVGGGIGIAPLLFLAKQLAERG-IKVTVLLGFRSADDLFLVEEFEALG 149 (246)
T ss_pred HhcCCCCCEEEEEecCCCCcCCCC--CCCcEEEEecccCHHHHHHHHHHHHhcC-CceEEEEEccchhhhhhHHHHHhhC
Confidence 999999999999999997 65543 5689999999999999999999998765 7999999999999999999999985
Q ss_pred hcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 439 SKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
. ++.+. ....+.+ ..+++.+. +.+... .....+|+|||++|++++++.|++.
T Consensus 150 ~---~~~~~--~~~~~~~------~~g~v~~~-----l~~~~~~~~~~~vyiCGp~~mv~~~~~~L~~~ 202 (246)
T cd06218 150 A---EVYVA--TDDGSAG------TKGFVTDL-----LKELLAEARPDVVYACGPEPMLKAVAELAAER 202 (246)
T ss_pred C---cEEEE--cCCCCCC------cceehHHH-----HHHHhhccCCCEEEEECCHHHHHHHHHHHHhc
Confidence 3 22222 1222211 12233322 222221 1246788999999999999999886
No 53
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.96 E-value=8.1e-29 Score=249.79 Aligned_cols=199 Identities=18% Similarity=0.225 Sum_probs=154.9
Q ss_pred EEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
++|+++++++++++.|+|+.|... ..++||||++|+++..+ ..||||+++.+. +.+.++|+||.. |.+|.
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~-~~~~pGQfv~l~~~~~~--~~rpySias~~~-----~~~~i~l~vk~~--G~~T~ 71 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVA-KKAKPGQFVIVRIDEKG--ERIPLTIADYDR-----EKGTITIVFQAV--GKSTR 71 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhh-ccCCCCeEEEEEeCCCC--CceeeEeeEEcC-----CCCEEEEEEEeC--CcHHH
Confidence 579999999999999999976532 34899999999986433 368999998652 578999999985 99999
Q ss_pred hhhcCCCCCEE-EEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHH
Q psy8246 359 LLCGLREGQEL-EVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTF 437 (527)
Q Consensus 359 ~L~~l~~Gd~v-~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l 437 (527)
+|+++++||+| .|.||+|+|.... ..++++|||||+||||++++++++.+.+ .+++++|++|+.+|+++.++|+++
T Consensus 72 ~L~~l~~Gd~v~~i~GP~G~~~~~~--~~~~~llIaGGiGiaPl~~l~~~l~~~~-~~v~l~~g~r~~~d~~~~~el~~~ 148 (281)
T PRK06222 72 KLAELKEGDSILDVVGPLGKPSEIE--KFGTVVCVGGGVGIAPVYPIAKALKEAG-NKVITIIGARNKDLLILEDEMKAV 148 (281)
T ss_pred HHhcCCCCCEEeeEEcCCCCCcccC--CCCeEEEEeCcCcHHHHHHHHHHHHHCC-CeEEEEEecCCHHHhhcHHHHHhh
Confidence 99999999999 7999999965433 3579999999999999999999988766 689999999999999999999988
Q ss_pred HhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc-CC-CcEEEEcCchHHHHHHHHHHHHh
Q psy8246 438 ASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN-SN-SLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~-~~-~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+.+ +.+ .....+.+. .+++.+. +.++.. .. ...+|+|||++|++++.+.|++.
T Consensus 149 ~~~---~~v--~~~d~~~g~------~G~v~~~-----l~~~~~~~~~~~~vy~CGP~~M~~~v~~~l~~~ 203 (281)
T PRK06222 149 SDE---LYV--TTDDGSYGR------KGFVTDV-----LKELLESGKKVDRVVAIGPVIMMKFVAELTKPY 203 (281)
T ss_pred CCe---EEE--EcCCCCcCc------ccchHHH-----HHHHhhcCCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 742 222 122223221 2333322 222221 11 34678999999999999999765
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.96 E-value=7.5e-29 Score=245.68 Aligned_cols=199 Identities=18% Similarity=0.223 Sum_probs=155.1
Q ss_pred EEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
++|++++++++|++.|+|+.+.. ...|+||||++|++...+ ..|+||+++.+. +.+.++|+||.. |.+|.
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~-~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~-----~~~~~~~~vk~~--G~~t~ 70 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI-AKKAKPGQFVIVRADEKG--ERIPLTIADWDP-----EKGTITIVVQVV--GKSTR 70 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh-hccCCCCcEEEEEcCCCC--CccceEeEEEcC-----CCCEEEEEEEeC--CchHH
Confidence 47899999999999999998753 235899999999986433 468999999752 578999999985 88999
Q ss_pred hhhcCCCCCEE-EEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHH
Q psy8246 359 LLCGLREGQEL-EVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTF 437 (527)
Q Consensus 359 ~L~~l~~Gd~v-~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l 437 (527)
+|.++++||.+ .|+||+|.|.+.. ..++++|||||||||||+++++++.+.. .+++|+|++|+.+|+++.+||++|
T Consensus 71 ~l~~l~~G~~v~~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~l~~~~~~~-~~v~l~~~~r~~~~~~~~~el~~l 147 (248)
T cd06219 71 ELATLEEGDKIHDVVGPLGKPSEIE--NYGTVVFVGGGVGIAPIYPIAKALKEAG-NRVITIIGARTKDLVILEDEFRAV 147 (248)
T ss_pred HHHhcCCCCEeeeeecCCCCCeecC--CCCeEEEEeCcccHHHHHHHHHHHHHcC-CeEEEEEEcCCHHHhhhHHHHHhh
Confidence 99999999999 6999999976543 3679999999999999999999988766 789999999999999999999999
Q ss_pred HhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc--CCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 438 ASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN--SNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~--~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+.+ +.+. ....+.+. .+++.. .+.++.. .....+|+|||++|++++.+.|++.
T Consensus 148 ~~~---~~~~--~~~~~~~~------~g~v~~-----~l~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~ 202 (248)
T cd06219 148 SDE---LIIT--TDDGSYGE------KGFVTD-----PLKELIESGEKVDLVIAIGPPIMMKAVSELTRPY 202 (248)
T ss_pred cCe---EEEE--eCCCCCCc------cccchH-----HHHHHHhccCCccEEEEECCHHHHHHHHHHHHHc
Confidence 743 1111 12222211 222222 2222321 1234688999999999999999864
No 55
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=5.6e-29 Score=242.20 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=145.3
Q ss_pred EEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeC----------------CeeeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 283 HQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVN----------------DVDISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 283 ~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~----------------g~~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
+++.+++|++.|+|+.+.+. .+.|+|||||.|+++.. ++...|+|||+|.+... +..+.|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~--~~~~~l~ 79 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHD--PATDEFE 79 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccC--CCCCEEE
Confidence 46789999999999998752 24599999999998641 22467999999987310 0137999
Q ss_pred EEEEEeCCCCchHhhhcCC--C---CCEEEEeccccccccCCC--CCCccEEEEEecCCchhHHHHHHHHHHhC--CCcE
Q psy8246 346 FLIKSYEDGLLSPLLCGLR--E---GQELEVSSPEGKFDVGLI--GKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSV 416 (527)
Q Consensus 346 l~IK~y~~G~~S~~L~~l~--~---Gd~v~i~GP~G~f~~~~~--~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v 416 (527)
|.||.. |.+|++|.++. . |+.|.|.||+|.|.+... ...++++|||||||||||++|+++++... ..++
T Consensus 80 l~vk~~--G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v 157 (220)
T cd06197 80 ITVRKK--GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDI 157 (220)
T ss_pred EEEEeC--CCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccCCCcE
Confidence 999986 99999998843 3 999999999999987541 24678999999999999999999998753 4799
Q ss_pred EEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHH
Q psy8246 417 QLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAV 496 (527)
Q Consensus 417 ~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~ 496 (527)
+|+|++|+.+|+++.+||.++.. +.+.... . . . ..+|+|||++|+
T Consensus 158 ~l~~~~r~~~~~~~~~el~~~~~----~~~~~~~---------~--~-----------------~---~~v~~CGP~~m~ 202 (220)
T cd06197 158 TLLWSLREDDLPLVMDTLVRFPG----LPVSTTL---------F--I-----------------T---SEVYLCGPPALE 202 (220)
T ss_pred EEEEEecchhhHHHHHHHHhccC----CceEEEE---------E--E-----------------e---ccEEEECcHHHH
Confidence 99999999999999999987652 2111100 0 0 0 147799999999
Q ss_pred HHHHHHHHHh
Q psy8246 497 AAVADKMTGM 506 (527)
Q Consensus 497 ~~v~~~L~~l 506 (527)
+++.+.+++.
T Consensus 203 ~~~~~~~~~~ 212 (220)
T cd06197 203 KAVLEWLEGK 212 (220)
T ss_pred HHHHHHhhhc
Confidence 9999999875
No 56
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.96 E-value=2.2e-28 Score=241.91 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=152.7
Q ss_pred CEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC-----CCchHhhhc-C
Q psy8246 290 NVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED-----GLLSPLLCG-L 363 (527)
Q Consensus 290 d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~-----G~~S~~L~~-l 363 (527)
+++.|+|+.++ ....|+||||+.|+++ +....|+|||+|.+ ..+.++|+||++++ |.+|.+|++ +
T Consensus 17 ~v~~l~l~~~~-~~~~f~pGQ~v~l~~~--~~~~~R~YSIas~p------~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~ 87 (245)
T cd06200 17 PLWRLRLTPPD-AGAQWQAGDIAEIGPR--HPLPHREYSIASLP------ADGALELLVRQVRHADGGLGLGSGWLTRHA 87 (245)
T ss_pred ceEEEEEecCC-CCCCccCCcEEEecCC--CCCCCcceEeccCC------CCCEEEEEEEEeccCCCCCeeechhhhhCC
Confidence 58899998864 2345999999999964 23567999999986 56789999999876 789999987 6
Q ss_pred CCCCEEEEecccc-ccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCC-chhhhHHHHHHHHhcC
Q psy8246 364 REGQELEVSSPEG-KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTE-QDIIWRDQLDTFASKN 441 (527)
Q Consensus 364 ~~Gd~v~i~GP~G-~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~-~di~~~~eL~~l~~~~ 441 (527)
++||+|.|.||.| .|.+.. ..++++|||||||||||++|+++++.....+++|+|++|+. +|++|.+||++++++.
T Consensus 88 ~~Gd~v~i~gp~gg~F~~~~--~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~ 165 (245)
T cd06200 88 PIGASVALRLRENPGFHLPD--DGRPLILIGNGTGLAGLRSHLRARARAGRHRNWLLFGERQAAHDFFCREELEAWQAAG 165 (245)
T ss_pred CCCCEEEEEecCCCcccCCC--CCCCEEEEecCcChHHHHHHHHHHHhccCCCeEEEEecCCccccHhHHHHHHHHHHCC
Confidence 9999999999765 687643 45799999999999999999999986554579999999998 5999999999999887
Q ss_pred CCCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 442 SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 442 ~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
+++++....+++... .+++.+.+.. ..+.++... ...+|+|||+ +|++++++.|.++
T Consensus 166 ~~~~~~~~~s~~~~~-------~~~v~~~l~~~~~~~~~~~~~-~~~vy~CGp~~~m~~~v~~~l~~~ 225 (245)
T cd06200 166 HLARLDLAFSRDQAQ-------KRYVQDRLRAAADELRAWVAE-GAAIYVCGSLQGMAPGVDAVLDEI 225 (245)
T ss_pred CcceEEEEEccCCCC-------CcchHHHHHHhHHHHHHHHHC-CcEEEEECCchhhhHHHHHHHHHH
Confidence 777776655554311 1222222221 112222322 3578899999 9999999999887
No 57
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.96 E-value=2.5e-28 Score=242.22 Aligned_cols=200 Identities=18% Similarity=0.264 Sum_probs=158.3
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.|+.++|++++++++|++.|+|+.+ ..+.|+||||+.|+++..+....|+||+++.+ .+.++|.||. .|
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~--~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-------~~~l~l~Vk~--~G 71 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGE--KVFDMKPGQFVMVWVPGVEPLLERPISISDID-------KNEITILYRK--VG 71 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCc--cccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-------CCEEEEEEEE--cC
Confidence 4678999999999999999999965 33459999999999976555678999999863 5689999997 48
Q ss_pred CchHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHH
Q psy8246 355 LLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQ 433 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~e 433 (527)
.+|.+|+++++||+|.|.||+|. |.+.. ..++++||||||||||++++++++.... .+++|+|++|+.+|++++++
T Consensus 72 ~~t~~l~~l~~G~~v~i~gP~G~~f~l~~--~~~~~vlIagG~GiaP~~s~l~~~~~~~-~~v~l~~~~r~~~d~~~~~e 148 (250)
T PRK00054 72 EGTKKLSKLKEGDELDIRGPLGNGFDLEE--IGGKVLLVGGGIGVAPLYELAKELKKKG-VEVTTVLGARTKDEVIFEEE 148 (250)
T ss_pred hHHHHHhcCCCCCEEEEEcccCCCCCCCC--CCCeEEEEeccccHHHHHHHHHHHHHcC-CcEEEEEEcCCHHHhhhHHH
Confidence 99999999999999999999998 77643 5579999999999999999999998766 78999999999999999999
Q ss_pred HHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 434 LDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 434 L~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
|+++++ +.+. ....+.+. .+++...+ .+.. .....+|+|||++|++++.+.|++.
T Consensus 149 l~~~~~----~~~~--~~~~~~~~------~g~v~~~l-----~~~~-~~~~~vyvCGp~~m~~~v~~~l~~~ 203 (250)
T PRK00054 149 FAKVGD----VYVT--TDDGSYGF------KGFVTDVL-----DELD-SEYDAIYSCGPEIMMKKVVEILKEK 203 (250)
T ss_pred HHhcCC----EEEE--ecCCCCCc------ccchhHhH-----hhhc-cCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 998542 2221 11222111 22332222 2222 1234678999999999999999875
No 58
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.96 E-value=4.3e-28 Score=285.27 Aligned_cols=221 Identities=18% Similarity=0.279 Sum_probs=175.8
Q ss_pred CCCceEEEEEEEEE---EecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEE
Q psy8246 272 PVSKFNTMRLLHQE---QVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFL 347 (527)
Q Consensus 272 ~~~~~~~~~v~~~~---~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~ 347 (527)
+...|.+++|++++ +++++++.|+|++|+... +.|+|||||.|+++.+|....|+|||++.+. +.+.|+|+
T Consensus 910 ~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-----~~~~i~l~ 984 (1167)
T PTZ00306 910 SKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-----DLGVISIL 984 (1167)
T ss_pred CCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-----CCCeEEEE
Confidence 45689999999997 569999999999987533 4699999999998877878899999999763 56889999
Q ss_pred EEEeCCCCchHhhhcCCCCCEEEEeccccc----------cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC----C
Q psy8246 348 IKSYEDGLLSPLLCGLREGQELEVSSPEGK----------FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ----R 413 (527)
Q Consensus 348 IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~----------f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~----~ 413 (527)
||. ++|.+|.+|+++++||+|+|+||.|. |.+.. ...++++|||||||||||++|+++++.++ .
T Consensus 985 Vr~-~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~-~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~ 1062 (1167)
T PTZ00306 985 ARG-DKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRG-HVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSI 1062 (1167)
T ss_pred EEc-CCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeecc-CCCceEEEEECCccHhHHHHHHHHHHhCcccCCC
Confidence 984 68999999999999999999998773 44433 34578999999999999999999998754 3
Q ss_pred CcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc--CCCcEEEEc
Q psy8246 414 QSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN--SNSLVYSQL 490 (527)
Q Consensus 414 ~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~--~~~~~~yiC 490 (527)
.+++|+|++|+.+|++|++||++|+++++ +|+++...++......+ ..+++.. ..+++++. .....+|+|
T Consensus 1063 ~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~---~~G~i~~----~~l~~~l~~~~~~~~vyiC 1135 (1167)
T PTZ00306 1063 ESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTD---GVGFVDR----ALLQSALQPPSKDLLVAIC 1135 (1167)
T ss_pred ceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCC---CCCCCCH----HHHHHhcCCCCCCeEEEEe
Confidence 58999999999999999999999998765 68887665542211111 1233322 23334332 134668899
Q ss_pred CchHHHHHHHHHHHHh
Q psy8246 491 NLPYAVAAVADKMTGM 506 (527)
Q Consensus 491 GPp~m~~~v~~~L~~l 506 (527)
||++|++++.+.|+++
T Consensus 1136 GP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1136 GPPVMQRAVKADLLAL 1151 (1167)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999886
No 59
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.7e-28 Score=240.32 Aligned_cols=204 Identities=21% Similarity=0.268 Sum_probs=168.8
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeC-CeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-DVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL 355 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~ 355 (527)
+.++|+..++.+.++..++.....+.. +++|||.+|+++.. +....|||||+++. +..+++|.||. -|.
T Consensus 216 y~~~vt~~~r~~~~t~eit~~l~~~~~--~qaGQFAfLk~~~~~~~~~~HPFTIa~s~------~~sel~FsIK~--LGD 285 (438)
T COG4097 216 YLGKVTAPQRGNVDTLEITIGLQGPWL--YQAGQFAFLKIEIEEFRMRPHPFTIACSH------EGSELRFSIKA--LGD 285 (438)
T ss_pred cceEEechhhcCcchheeecccCCccc--ccCCceEEEEeccccccCCCCCeeeeeCC------CCceEEEEehh--hhh
Confidence 468999999999999888888765544 89999999999863 34668999999976 45579999996 599
Q ss_pred chHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHH
Q psy8246 356 LSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQ 433 (527)
Q Consensus 356 ~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~e 433 (527)
+|+-|.+ |++|+++++.||||.|.++. ...+.|+||||+||||++++++.+.... ...|+|+|+.|+.++.+|.+|
T Consensus 286 ~Tk~l~dnLk~G~k~~vdGPYG~F~~~~--g~~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~e 363 (438)
T COG4097 286 FTKTLKDNLKVGTKLEVDGPYGKFDFER--GLNTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEE 363 (438)
T ss_pred hhHHHHHhccCCceEEEecCcceeeccc--CCcccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchhHHHHH
Confidence 9999988 99999999999999999876 2344999999999999999999999855 799999999999999999999
Q ss_pred HHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCC-CcEEEEcCchHHHHHHHHHHHHh
Q psy8246 434 LDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSN-SLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 434 L~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~-~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
|++++++.+++.++...+.+. +. +..+.++...+.+ ...+|+|||++|++++++.|+..
T Consensus 364 Lr~~~qkl~~~~lHiiDSs~~----g~----------l~~e~ler~~~~~~~~sv~fCGP~~m~dsL~r~l~~~ 423 (438)
T COG4097 364 LRALAQKLPNVVLHIIDSSKD----GY----------LDQEDLERYPDRPRTRSVFFCGPIKMMDSLRRDLKKQ 423 (438)
T ss_pred HHHHHhcCCCeEEEEecCCCC----Cc----------cCHHHhhccccccCcceEEEEcCHHHHHHHHHHHHHc
Confidence 999999889999887544433 22 1222333332222 34678999999999999999987
No 60
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.95 E-value=2.1e-27 Score=233.11 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=147.8
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHh
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~ 359 (527)
+|++++++++|++.|+|+.+. .|+||||+.|+++.. ..|+||+++. . +.++|+||.. |.+|+|
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~----~~~pGQ~v~l~~~~~---~~~~~Si~s~-------~-~~l~~~v~~~--G~~s~~ 64 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWDF----DFKPGQFVMVWVPGV---DEIPMSLSYI-------D-GPNSITVKKV--GEATSA 64 (233)
T ss_pred EEEEEEEEcCCEEEEEEecCC----CCCCCceEEEEeCCC---CcceeEEecC-------C-CeEEEEEEec--ChHHHH
Confidence 789999999999999999752 589999999998532 2489999985 3 6899999985 899999
Q ss_pred hhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHH
Q psy8246 360 LCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFA 438 (527)
Q Consensus 360 L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~ 438 (527)
|+++++||.|.|.||+|. |.+. .++++|||||||||||++|+++++.. .+++|+|++|+.+|++++++|+++
T Consensus 65 L~~l~~Gd~v~i~gP~G~~f~~~----~~~~vliAgGtGitP~~sil~~~~~~--~~i~l~~~~r~~~d~~~~~eL~~~- 137 (233)
T cd06220 65 LHDLKEGDKLGIRGPYGNGFELV----GGKVLLIGGGIGIAPLAPLAERLKKA--ADVTVLLGARTKEELLFLDRLRKS- 137 (233)
T ss_pred HHhcCCCCEEEEECcCCCCccCC----CCeEEEEecCcChHHHHHHHHHHHhc--CCEEEEEecCChHHChhHHHHhhC-
Confidence 999999999999999998 7653 57999999999999999999999875 689999999999999999999982
Q ss_pred hcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 439 SKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 439 ~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.++.+.. ...+.+ ..+++.+. +.++.......+|+|||++|++++.+.|++.
T Consensus 138 ---~~~~~~~--~~~~~~------~~g~~~~~-----l~~~~~~~~~~vyicGp~~m~~~~~~~L~~~ 189 (233)
T cd06220 138 ---DELIVTT--DDGSYG------FKGFVTDL-----LKELDLEEYDAIYVCGPEIMMYKVLEILDER 189 (233)
T ss_pred ---CcEEEEE--eCCCCc------ccceehHH-----HhhhcccCCCEEEEECCHHHHHHHHHHHHhc
Confidence 2333322 122221 12333322 2222222234688999999999999999876
No 61
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.94 E-value=1.6e-26 Score=227.28 Aligned_cols=198 Identities=14% Similarity=0.024 Sum_probs=149.9
Q ss_pred EEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCC-------------------eeeeeeeeccCCCCCCCCCC
Q psy8246 281 LLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVND-------------------VDISKPYTPVEPLQAAPLSY 340 (527)
Q Consensus 281 v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g-------------------~~~~R~YT~~s~~~~~~~~~ 340 (527)
|++++++++++++|+|+.+.... ..+.|||||.|+++..+ ....|+||+++.+. +
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-----~ 75 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-----E 75 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-----C
Confidence 56889999999999999987532 35899999999987653 46789999999753 5
Q ss_pred CCEEEEEEEEeCC-CCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEE
Q psy8246 341 SNTLTFLIKSYED-GLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLV 419 (527)
Q Consensus 341 ~~~l~l~IK~y~~-G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~ 419 (527)
.+.++|.||.+++ |.+|+||+++++||+|.|.||+|.|.+.. ..++++||||||||||+++|++++... .+++++
T Consensus 76 ~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~--~~~~~vlia~GtGi~p~~~il~~~~~~--~~~~~~ 151 (235)
T cd06193 76 AGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFLPPP--DADWYLLAGDETALPAIAAILEELPAD--ARGTAL 151 (235)
T ss_pred CCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCCCCC--CcceEEEEeccchHHHHHHHHHhCCCC--CeEEEE
Confidence 7899999999887 99999999999999999999999998754 467999999999999999999988653 689999
Q ss_pred EEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHH
Q psy8246 420 FFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAA 498 (527)
Q Consensus 420 ~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~ 498 (527)
|++++.+|++..++ .+++++....+.+... +. .... .+..+. ......+|+|||++|+++
T Consensus 152 ~~~~~~~d~~~l~~-------~~~~~~~~~~~~~~~~--~~---~~~~-------~~~~~~~~~~~~~vyicGp~~mv~~ 212 (235)
T cd06193 152 IEVPDAADEQPLPA-------PAGVEVTWLHRGGAEA--GE---LALL-------AVRALAPPAGDGYVWIAGEAGAVRA 212 (235)
T ss_pred EEECCHHHccccCC-------CCCcEEEEEeCCCCCc--ch---hHHH-------HHhcccCCCCCeEEEEEccHHHHHH
Confidence 99999977643222 2345554433222110 10 0000 111111 123467889999999999
Q ss_pred HHHHHHHh
Q psy8246 499 VADKMTGM 506 (527)
Q Consensus 499 v~~~L~~l 506 (527)
+++.|++.
T Consensus 213 v~~~l~~~ 220 (235)
T cd06193 213 LRRHLREE 220 (235)
T ss_pred HHHHHHHc
Confidence 99999763
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=3.7e-25 Score=251.42 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=156.4
Q ss_pred EEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
++|++++.++++++.|+|+.|... ..++||||++|+++..+ ..||||+++.+. +.+.|+|+||.. |.+|.
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~-~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-----~~g~i~~~vk~v--G~~T~ 71 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIA-KSRKPGQFVIVRVGEKG--ERIPLTIADADP-----EKGTITLVIQEV--GLSTT 71 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchh-ccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-----CCCEEEEEEEEc--CchHH
Confidence 479999999999999999976432 24899999999986444 368999998763 678999999986 99999
Q ss_pred hhhcCCCCCEE-EEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHH
Q psy8246 359 LLCGLREGQEL-EVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTF 437 (527)
Q Consensus 359 ~L~~l~~Gd~v-~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l 437 (527)
+|+++++||.| .|.||+|+|.... ..++++|||||+|||||+++++++.+.+ .+++|+|++|+.+|++|.++|+++
T Consensus 72 ~L~~l~~Gd~v~~v~GP~G~~~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~~~-~~v~l~~g~r~~~~l~~~~el~~~ 148 (752)
T PRK12778 72 KLCELNEGDYITDVVGPLGNPSEIE--NYGTVVCAGGGVGVAPMLPIVKALKAAG-NRVITILGGRSKELIILEDEMRES 148 (752)
T ss_pred HHhcCCCCCEeCeEeCCCCCCccCC--CCCeEEEEECCEeHHHHHHHHHHHHHCC-CeEEEEeccCCHHHhhhHHHHHhh
Confidence 99999999999 7999999976543 3479999999999999999999998876 789999999999999999999998
Q ss_pred HhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC--CCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 438 ASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS--NSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 438 ~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~--~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+.+ +.+.. ...+.+. .+++.+. +.++... ....+|+|||++|++++.+.|++.
T Consensus 149 ~~~---~~~~t--~dg~~g~------~G~v~~~-----l~~~~~~~~~~~~vy~CGP~~M~~~v~~~l~~~ 203 (752)
T PRK12778 149 SDE---VIIMT--DDGSYGR------KGLVTDG-----LEEVIKRETKVDKVFAIGPAIMMKFVCLLTKKY 203 (752)
T ss_pred cCe---EEEEE--CCCCCCC------cccHHHH-----HHHHhhcCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 643 22222 2223222 2333222 2222221 124578999999999999999764
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=1.6e-24 Score=248.96 Aligned_cols=214 Identities=14% Similarity=0.139 Sum_probs=160.6
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.+..++|++++.++++++.|+|+.|... ..++||||++|++...+ ..||||+++.+. +.+.|+|+||.+ |
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~-~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-----~~g~i~l~Vk~v--G 716 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVA-RSAQAGQFVRVLPWEKG--ELIPLTLADWDA-----EKGTIDLVVQGM--G 716 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCcc-ccCCCCceEEEEeCCCC--CEEeEEccCCCC-----CCCEEEEEEEee--c
Confidence 5789999999999999999999987532 24899999999976455 358999998653 578999999986 8
Q ss_pred CchHhhhcCCCCCEEE-Eeccccccc-cCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCGLREGQELE-VSSPEGKFD-VGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~-i~GP~G~f~-~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~ 432 (527)
..|.+|+++++||.|. |.||+|+|. +......++++|||||+||||+++|++++++.+ .+++|+|++|+.+++++.+
T Consensus 717 ~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-~~V~li~G~Rs~edl~~~d 795 (944)
T PRK12779 717 TSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-NHVTLISGFRAKEFLFWTG 795 (944)
T ss_pred cHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-CCEEEEEEeCCHHHhhhHH
Confidence 8899999999999995 999999964 322112368999999999999999999998876 7899999999999999877
Q ss_pred HH---HHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhc---CCCcEEEEcCchHHHHHHHHHHHH
Q psy8246 433 QL---DTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLN---SNSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 433 eL---~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~---~~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
++ ++|++.++ .+.++......+.+. .+++...+. ..+.+... .....+|+|||++||+++.+.|++
T Consensus 796 el~~L~~la~~~~~~~~v~~ttddgs~G~------~G~Vt~~l~-~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~ 868 (944)
T PRK12779 796 DDERVGKLKAEFGDQLDVIYTTNDGSFGV------KGFVTGPLE-EMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKP 868 (944)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCCCC------ccccChHHH-HHHHhcccccccCCcEEEEECCHHHHHHHHHHHHH
Confidence 65 55655544 455554433333322 233332221 11222110 012467899999999999999977
Q ss_pred h
Q psy8246 506 M 506 (527)
Q Consensus 506 l 506 (527)
.
T Consensus 869 ~ 869 (944)
T PRK12779 869 Y 869 (944)
T ss_pred c
Confidence 5
No 64
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.92 E-value=4.8e-25 Score=211.40 Aligned_cols=222 Identities=15% Similarity=0.202 Sum_probs=185.2
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEe-----------------------------CCeeeeeee
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIV-----------------------------NDVDISKPY 327 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-----------------------------~g~~~~R~Y 327 (527)
.+|+|++...+.-=+..+.++.|++....|++|-|+.|.++. ..+...|+|
T Consensus 135 WectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAY 214 (410)
T COG2871 135 WECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAY 214 (410)
T ss_pred eeEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHh
Confidence 358999988888888899999999988889999999997751 123467999
Q ss_pred eccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCc
Q psy8246 328 TPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGL 398 (527)
Q Consensus 328 T~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGI 398 (527)
|+++-|. +.+.|.|-||+. +-|.||+|+..|++||.|.|+||+|.|.... ....++||+||.|.
T Consensus 215 SmAsYPe-----E~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd--tdaemvFigGGAGm 287 (410)
T COG2871 215 SMASYPE-----EKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD--TDAEMVFIGGGAGM 287 (410)
T ss_pred hhhcChh-----hcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc--CCCceEEEecCcCc
Confidence 9999874 789999999986 4699999999999999999999999977654 56899999999999
Q ss_pred hhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHH
Q psy8246 399 TPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVEL 476 (527)
Q Consensus 399 tP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l 476 (527)
+||.+-+-+.+.+. .+++.+.|++|+..+.+|.+++++|+++++||+.+...+.... +.+.....+-+...+....+
T Consensus 288 apmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplp-EDnW~g~TgFihnv~~en~L 366 (410)
T COG2871 288 APMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLP-EDNWDGYTGFIHNVLYENYL 366 (410)
T ss_pred CchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCC-cCCcccchhHHHHHHHhhhh
Confidence 99999888777765 8999999999999999999999999999999999876554321 11222334445555666667
Q ss_pred HhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 477 EDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 477 ~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.++..+.+..||+||||-|+.++.++|+++
T Consensus 367 k~h~aPEDceyYmCGPp~mNasvikmL~dl 396 (410)
T COG2871 367 KDHEAPEDCEYYMCGPPLMNASVIKMLKDL 396 (410)
T ss_pred hcCCCchheeEEeeCcchhhHHHHHHHHhc
Confidence 777777789999999999999999999998
No 65
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.92 E-value=3e-24 Score=207.12 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=139.4
Q ss_pred EEEEec-CCEEEEEEEeCCCcCcccCCccEEEEEEEeC-CeeeeeeeeccCCCCCCCCCC-CCEEEEEEEEeCCCCchHh
Q psy8246 283 HQEQVT-HNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-DVDISKPYTPVEPLQAAPLSY-SNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 283 ~~~~vs-~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-g~~~~R~YT~~s~~~~~~~~~-~~~l~l~IK~y~~G~~S~~ 359 (527)
.++.+. ++++.++|..+. ...+.||||++|+++.. +....||||+++.+. + .+.++|+||.+ +|..+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~--~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~-----~~~~~i~~~vk~~-~G~~t~~ 74 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPK--PFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPE-----DEQDTLSLIIRAK-KGFTTRL 74 (210)
T ss_pred EEEEecCCCEEEEEEecCC--CCccCCCCEEEEEeCCCCCCcccCCcEeeeCCC-----CCCCEEEEEEEec-CChHHHH
Confidence 345555 899999999874 34599999999999865 557889999999862 2 48999999986 4777787
Q ss_pred hhcCC------CCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-----CCcEEEEEEeCCCchh
Q psy8246 360 LCGLR------EGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-----RQSVQLVFFNRTEQDI 428 (527)
Q Consensus 360 L~~l~------~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-----~~~v~L~~~~r~~~di 428 (527)
+..+. .|+.+.|.||+|.+.... ..+++++|||||+||||+++++++++... ..+++|+|++|+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~v~v~GP~G~~~~~~-~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~ 153 (210)
T cd06186 75 LRKALKSPGGGVSLKVLVEGPYGSSSEDL-LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDL 153 (210)
T ss_pred HHHHHhCcCCCceeEEEEECCCCCCccCh-hhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHh
Confidence 77776 899999999999986332 35789999999999999999999998762 4789999999999995
Q ss_pred -hhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHH
Q psy8246 429 -IWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 429 -~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
++.++|.+..+.....++....++ +|+|||.+|++.+++.+.+
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~i~~T~----------------------------------v~~CGp~~~~~~~~~~~~~ 197 (210)
T cd06186 154 EWFLDELRAAQELEVDGEIEIYVTR----------------------------------VVVCGPPGLVDDVRNAVAK 197 (210)
T ss_pred HHHHHHHHhhhhccCCceEEEEEee----------------------------------EEEECchhhccHHHHHHhh
Confidence 788998761111111111111000 5699999999999998875
No 66
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.91 E-value=1.7e-23 Score=219.97 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=140.0
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEE
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVL 391 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivl 391 (527)
....|+|||+|.+.. +.+.++|+||+. ..|.+|+||+++++||.|.|.+|.|.|.++. +...+++|
T Consensus 161 ~l~~R~YSIaSsp~~----~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~-~~~~plIm 235 (382)
T cd06207 161 LIKPRYYSISSSPLK----NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPK-DPKKPIIM 235 (382)
T ss_pred CCCCceeeecCCCcC----CCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCCC-CCCCCEEE
Confidence 457899999998731 358899999986 4699999999999999999999999998865 34679999
Q ss_pred EEecCCchhHHHHHHHHHHh----C-CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccc
Q psy8246 392 LAAGTGLTPMIPVINWSIQS----Q-RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLM 465 (527)
Q Consensus 392 IAgGtGItP~l~ll~~l~~~----~-~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ 465 (527)
||||||||||++++++.... . ..+++|+|++|+. +|++|++||+++++....++++...+++... .+
T Consensus 236 Ia~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~~-------~~ 308 (382)
T cd06207 236 VGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQPK-------KV 308 (382)
T ss_pred EcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCCC-------ce
Confidence 99999999999999987643 2 5799999999998 9999999999999877778888877775421 12
Q ss_pred hhhhhhch--hHHHhhhcCCCcEEEEcCchH-HHHHHHHHHHHh
Q psy8246 466 RIRTTLKR--VELEDLLNSNSLVYSQLNLPY-AVAAVADKMTGM 506 (527)
Q Consensus 466 ri~~~~~~--~~l~~l~~~~~~~~yiCGPp~-m~~~v~~~L~~l 506 (527)
++++.+.. ..+.+++......||||||+. |+++|++.|.++
T Consensus 309 yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~ 352 (382)
T cd06207 309 YVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEI 352 (382)
T ss_pred EhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHH
Confidence 33333322 334455544444788999998 999999999988
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.90 E-value=6.2e-23 Score=237.74 Aligned_cols=199 Identities=13% Similarity=0.195 Sum_probs=154.1
Q ss_pred EEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchH
Q psy8246 279 MRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSP 358 (527)
Q Consensus 279 ~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~ 358 (527)
++|+++++++++++.++|..|... ..++|||||+|++...+ ..||||+++.+. +.+.|+|.||.. |..|+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a-~~~~PGQFV~l~~~~~~--errplSIa~~~~-----~~g~i~l~vk~v--G~~T~ 71 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVA-ASAEPGHFVMLRLYEGA--ERIPLTVADFDR-----KKGTITMVVQAL--GKTTR 71 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcc-cCCCCCeeEEEEeCCCC--eeEEEEecCcCC-----CCCEEEEEEEec--CcHHH
Confidence 479999999999999999988753 35899999999986443 368999998653 678999999984 89999
Q ss_pred hh-hcCCCCCEE-EEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHH
Q psy8246 359 LL-CGLREGQEL-EVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDT 436 (527)
Q Consensus 359 ~L-~~l~~Gd~v-~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~ 436 (527)
+| .++++||.| .+.||+|.+.... ..++++|||||+||||+++|++++.+.+ .+++++|++|+.+++++.++|..
T Consensus 72 ~L~~~lk~Gd~l~~v~GPlG~~~~~~--~~~~vllVaGGiGIAPl~s~~r~l~~~g-~~v~li~g~R~~~~l~~~del~~ 148 (1006)
T PRK12775 72 EMMTKFKAGDTFEDFVGPLGLPQHID--KAGHVVLVGGGLGVAPVYPQLRAFKEAG-ARTTGIIGFRNKDLVFWEDKFGK 148 (1006)
T ss_pred HHHhcCCCCCEEeeeecCCCCCCCCC--CCCeEEEEEEhHHHHHHHHHHHHHHhCC-CcEEEEEeCCChHHcccHHHHHh
Confidence 98 479999999 7999999865433 3578999999999999999999998776 77999999999999999999987
Q ss_pred HHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC-CCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 437 FASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS-NSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 437 l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~-~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+.. ++.+.. ...+.+. .+++.+. +.+++.. ....+|+|||+.||+++.+.+++.
T Consensus 149 ~~~---~~~v~t--ddgs~G~------~G~vt~~-----l~~~l~~~~~d~vy~CGP~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 149 YCD---DLIVCT--DDGSYGK------PGFVTAA-----LKEVCEKDKPDLVVAIGPLPMMNACVETTRPF 203 (1006)
T ss_pred hcC---cEEEEE--CCCCCCC------CCChHHH-----HHHHhccCCCCEEEEECCHHHHHHHHHHHHHC
Confidence 753 333322 2223222 2333222 2233221 123578999999999999999764
No 68
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.90 E-value=1.9e-23 Score=217.71 Aligned_cols=186 Identities=13% Similarity=0.191 Sum_probs=145.5
Q ss_pred cccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe--------CCCCchHhhhc-CCCCCEEEEecc
Q psy8246 304 FYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY--------EDGLLSPLLCG-LREGQELEVSSP 374 (527)
Q Consensus 304 ~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--------~~G~~S~~L~~-l~~Gd~v~i~GP 374 (527)
..+++||++.+..+ ...|+|||+|.+.. ..+.++|+|++. ..|.+|.||++ +++||.|.|.+|
T Consensus 130 ~~~~~gq~l~l~~~----~~~R~YSIaSsp~~----~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~ 201 (360)
T cd06199 130 ARLTAEELLDLLRP----LQPRLYSIASSPKA----VPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQ 201 (360)
T ss_pred CCCCHHHHHHhCcC----CCCcceeeccCccc----CCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEe
Confidence 34889999998643 35799999998731 357899999976 57999999998 569999999974
Q ss_pred -ccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCC
Q psy8246 375 -EGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPS 451 (527)
Q Consensus 375 -~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s 451 (527)
.|.|.+.. ....+++|||+|||||||++++++.+... ..+++|+|++|+. +|++|++||+++++....++++...+
T Consensus 202 ~~~~F~lp~-~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 202 PNPHFRLPE-DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred cCCCcCCCC-CCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 45798865 34679999999999999999999887654 5789999999997 79999999999998777788887777
Q ss_pred CCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 452 TEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 452 ~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
++... .+++++.+.. ..+.+++.. ...+|||||+ .|+++|+++|.++
T Consensus 281 r~~~~-------~~yVq~~l~~~~~~~~~~~~~-~~~vYvCG~~~~M~~~V~~~L~~i 330 (360)
T cd06199 281 RDQAE-------KVYVQDRMREQGAELWAWLEE-GAHFYVCGDAKRMAKDVDAALLDI 330 (360)
T ss_pred cCCCC-------CccHHHHHHHhHHHHHHHHhC-CCEEEEECCCccccHHHHHHHHHH
Confidence 75421 1233333322 223333433 3678899999 8999999999998
No 69
>KOG0537|consensus
Probab=99.89 E-value=3.7e-24 Score=187.06 Aligned_cols=79 Identities=37% Similarity=0.659 Sum_probs=76.0
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSLPD 128 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~~~ 128 (527)
|+.+|+++||+.+||||+|+|+|||||.|+++||||.++|+.+||+|||+.|+..+|+..|++||++|+||.+...+..
T Consensus 7 ~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~~~~ 85 (124)
T KOG0537|consen 7 YTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTTARP 85 (124)
T ss_pred ccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999888999999999999999877653
No 70
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.88 E-value=1.4e-22 Score=223.53 Aligned_cols=185 Identities=12% Similarity=0.156 Sum_probs=145.0
Q ss_pred ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe--------CCCCchHhhhc-CCCCCEEEEeccc
Q psy8246 305 YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY--------EDGLLSPLLCG-LREGQELEVSSPE 375 (527)
Q Consensus 305 ~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--------~~G~~S~~L~~-l~~Gd~v~i~GP~ 375 (527)
.+++|||+.+..+ ...|+|||+|++.. ..+.++|+|++. ..|.+|.||.+ +++||+|.|.+|.
T Consensus 368 ~~~~gq~v~ll~~----~~~R~YSIaSsp~~----~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~ 439 (597)
T TIGR01931 368 DLDAEQLISLLRP----LTPRLYSISSSQSE----VGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEP 439 (597)
T ss_pred CCCHHHHHHhCcc----cCCceeeeccCccc----CCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEee
Confidence 4899999998764 36799999998731 467899999864 57999999998 9999999999755
Q ss_pred -cccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCC-CchhhhHHHHHHHHhcCCCCeEeccCCC
Q psy8246 376 -GKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRT-EQDIIWRDQLDTFASKNSKPSSPRNPST 452 (527)
Q Consensus 376 -G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~-~~di~~~~eL~~l~~~~~~~~~~~~~s~ 452 (527)
|.|.++. +...+++|||+|||||||+++++++.... ..+++|+|++|+ .+|++|.+||+++.+....+++....++
T Consensus 440 ~~~F~lp~-~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR 518 (597)
T TIGR01931 440 NDNFRLPE-DPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR 518 (597)
T ss_pred CCcccCCC-CCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence 5798865 35579999999999999999999988766 678999999999 7899999999999877656666666666
Q ss_pred CCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcC-chHHHHHHHHHHHHh
Q psy8246 453 EIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLN-LPYAVAAVADKMTGM 506 (527)
Q Consensus 453 ~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCG-Pp~m~~~v~~~L~~l 506 (527)
+. .. .+++++.+.. ..+.+++.. ...+|||| |+.|+++|.++|.++
T Consensus 519 d~-~~------k~yVqd~l~e~~~~~~~~l~~-~a~vYvCG~~~~M~~~V~~~L~~i 567 (597)
T TIGR01931 519 DQ-AE------KIYVQHRIREQGAELWQWLQE-GAHIYVCGDAKKMAKDVHQALLDI 567 (597)
T ss_pred CC-CC------CccHHHHHHHhHHHHHHHHhC-CcEEEEECCCccccHHHHHHHHHH
Confidence 42 11 2334433332 223334443 46788999 889999999999988
No 71
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.88 E-value=2e-22 Score=211.92 Aligned_cols=185 Identities=18% Similarity=0.196 Sum_probs=141.2
Q ss_pred ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeC----------CCCchHhhhcCCCCCEEEE--e
Q psy8246 305 YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYE----------DGLLSPLLCGLREGQELEV--S 372 (527)
Q Consensus 305 ~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~----------~G~~S~~L~~l~~Gd~v~i--~ 372 (527)
.++.||++.+.. ....|+|||+|.+.. ..+.++|.|+++. .|.+|+||+++++||.|.+ +
T Consensus 146 ~~~~~~~l~~~p----~l~~R~YSIaSsp~~----~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~ 217 (384)
T cd06206 146 ALPLATFLAMLP----PMRPRQYSISSSPLV----DPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVR 217 (384)
T ss_pred CCCHHHHHHhCc----ccCCcceeeccCccC----CCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEe
Confidence 367899988863 246799999998631 3566777777642 6889999999999999985 5
Q ss_pred ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh---C--CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeE
Q psy8246 373 SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS---Q--RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSS 446 (527)
Q Consensus 373 GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~---~--~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~ 446 (527)
+|.|.|.+.. +..++++|||||||||||++++++.... + ..+++|+|++|+. +|++|.+||++|++ ..++++
T Consensus 218 ~p~g~F~l~~-~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~~~l 295 (384)
T cd06206 218 PSHSAFRPPS-DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGVVSV 295 (384)
T ss_pred cCCCccCCCC-CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCCeEE
Confidence 8999998865 3568999999999999999999987653 2 3589999999999 89999999999987 467888
Q ss_pred eccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 447 PRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 447 ~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+...+++.... .+++++.+.. +.+.+++.. ...+|||||++|+++|++.|.++
T Consensus 296 ~~a~Sr~~~~~------~~yVq~~i~~~~~~~~~~~~~-~~~vyiCGp~~M~~~v~~~L~~i 350 (384)
T cd06206 296 RRAYSRPPGGG------CRYVQDRLWAEREEVWELWEQ-GARVYVCGDGRMAPGVREVLKRI 350 (384)
T ss_pred EEEecccCCCC------CEechhhHHhhHHHHHHHHHC-CcEEEEECCCchHHHHHHHHHHH
Confidence 87777654321 1233333321 223334432 46678999999999999999988
No 72
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.87 E-value=1.5e-21 Score=206.45 Aligned_cols=174 Identities=15% Similarity=0.155 Sum_probs=133.7
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe-----------CCCCchHhhhcCCCCCEEEEeccc-cccccCCCCCCccE
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY-----------EDGLLSPLLCGLREGQELEVSSPE-GKFDVGLIGKRNKL 389 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y-----------~~G~~S~~L~~l~~Gd~v~i~GP~-G~f~~~~~~~~~~i 389 (527)
...|+|||+|.+.. ..+.++|+|++. ..|.+|+||+++++||.|.|.++. |.|.++. +...++
T Consensus 175 l~pR~YSIsSsp~~----~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~-~~~~pi 249 (406)
T cd06202 175 LQPRYYSISSSPDM----YPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE-DPSVPV 249 (406)
T ss_pred cCCcccccCCCccC----CCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC-CCCCCE
Confidence 46899999998731 356677777663 258899999999999999998754 4688765 356899
Q ss_pred EEEEecCCchhHHHHHHHHHHh--------C-CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccc
Q psy8246 390 VLLAAGTGLTPMIPVINWSIQS--------Q-RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKN 459 (527)
Q Consensus 390 vlIAgGtGItP~l~ll~~l~~~--------~-~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g 459 (527)
+|||+|||||||++++++.... . ..+++|+|++|+. +|++|++||+++.+....++++...+++....
T Consensus 250 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~~-- 327 (406)
T cd06202 250 IMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKP-- 327 (406)
T ss_pred EEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCCC--
Confidence 9999999999999999976421 1 4799999999999 89999999999998777778888778764321
Q ss_pred cccccchhhhhhc--hhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 460 IISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 460 ~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.+++++.+. .+.+.+++......+|||||+.|+++|++.|.++
T Consensus 328 ----k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~i 372 (406)
T cd06202 328 ----KTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQRI 372 (406)
T ss_pred ----CeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHHH
Confidence 133443333 2334445434457788999999999999999987
No 73
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.87 E-value=1.7e-21 Score=205.70 Aligned_cols=178 Identities=18% Similarity=0.214 Sum_probs=137.3
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC---CCchHhhhcCC-----CCCEEEEec-cccccccCCCCCCccEEE
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED---GLLSPLLCGLR-----EGQELEVSS-PEGKFDVGLIGKRNKLVL 391 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~---G~~S~~L~~l~-----~Gd~v~i~G-P~G~f~~~~~~~~~~ivl 391 (527)
....|+|||+|.+.. ..+.++|+|+++.. |.+|.||+++. +||+|.+.+ |.|.|.++..+...+++|
T Consensus 171 ~~~~R~YSIsSsp~~----~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piIm 246 (398)
T cd06203 171 RLQPRPYSIASSPLE----GPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIM 246 (398)
T ss_pred cCCCcceeecCCccc----CCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEE
Confidence 356799999998731 35889999999864 99999999987 999999998 678898865214579999
Q ss_pred EEecCCchhHHHHHHHHHHh------C-CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccc
Q psy8246 392 LAAGTGLTPMIPVINWSIQS------Q-RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISF 463 (527)
Q Consensus 392 IAgGtGItP~l~ll~~l~~~------~-~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~ 463 (527)
||+|||||||++++++.... . ..+++|+|++|+. +|++|++||+++++....+++....+++.... + .
T Consensus 247 Ia~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g---~ 322 (398)
T cd06203 247 VGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-S---T 322 (398)
T ss_pred EcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-C---C
Confidence 99999999999999987651 2 5789999999999 79999999999998777777877777754321 1 1
Q ss_pred cchhhhhhch--hHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 464 LMRIRTTLKR--VELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 464 ~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
.+++++.+.. ..+.+++......+|||||+ .|.++|+++|.++
T Consensus 323 k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i 368 (398)
T cd06203 323 PKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDI 368 (398)
T ss_pred ceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHH
Confidence 2344443322 23444444345778899995 7999999999886
No 74
>PLN02292 ferric-chelate reductase
Probab=99.87 E-value=3.8e-21 Score=212.33 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=125.5
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
..+++.+++.+++|+.+++|..+.. ..+.||||++|+++..+...+||||+++.+.+ +++.++|+||. .|.+
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~--~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~----~~~~l~l~IK~--~G~~ 396 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM--LMYSPTSIMFVNIPSISKLQWHPFTITSSSKL----EPEKLSVMIKS--QGKW 396 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC--CCcCCCCeEEEEEccCCccceeeeEeeccCCC----CCCEEEEEEEc--CCch
Confidence 4588999999999999999987753 35999999999998656678999999987521 46789999996 4889
Q ss_pred hHhhhc-CCCCCE-----EEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC------CCcEEEEEEeCC
Q psy8246 357 SPLLCG-LREGQE-----LEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ------RQSVQLVFFNRT 424 (527)
Q Consensus 357 S~~L~~-l~~Gd~-----v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~------~~~v~L~~~~r~ 424 (527)
|++|.+ ++.||. |.+.||+|.+.... ...++++|||||+||||+++++++++++. .+++.|+|++|+
T Consensus 397 T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~ 475 (702)
T PLN02292 397 STKLYHMLSSSDQIDRLAVSVEGPYGPASTDF-LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKN 475 (702)
T ss_pred hHHHHHhCCCCCccccceEEEECCccCCcccc-ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECC
Confidence 999987 789984 57999999876433 34689999999999999999999998753 168999999999
Q ss_pred CchhhhHHHHH
Q psy8246 425 EQDIIWRDQLD 435 (527)
Q Consensus 425 ~~di~~~~eL~ 435 (527)
.+|+.+.+++.
T Consensus 476 ~~Dl~~ld~l~ 486 (702)
T PLN02292 476 SSDLSMLDLIL 486 (702)
T ss_pred HHHhhHHHHHH
Confidence 99999887654
No 75
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.86 E-value=3e-21 Score=204.78 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=135.3
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC---------CCchHhhhcCC---------------------CCCEEE
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED---------GLLSPLLCGLR---------------------EGQELE 370 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~---------G~~S~~L~~l~---------------------~Gd~v~ 370 (527)
....|.|||+|++.. +.+.++|+|++... |..|+||+++. +||.|.
T Consensus 175 ~~~pR~YSIsSsp~~----~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 250 (416)
T cd06204 175 RLQPRYYSISSSSKV----HPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVP 250 (416)
T ss_pred cCCCcceeeccCccC----CCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEE
Confidence 357899999998731 46789999987643 89999999966 899999
Q ss_pred EeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh---C--CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCC
Q psy8246 371 VSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS---Q--RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKP 444 (527)
Q Consensus 371 i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~---~--~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~ 444 (527)
+..|.|.|.++. +...+++|||||||||||++++++.... . ..+++|+|++|+. +|++|++||++|++...++
T Consensus 251 v~~~~g~F~lp~-~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~ 329 (416)
T cd06204 251 VFVRRSNFRLPT-KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLL 329 (416)
T ss_pred EEEecCCCCCCC-CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCce
Confidence 999999998865 3468999999999999999999986532 1 3589999999998 7999999999998877788
Q ss_pred eEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCchH-HHHHHHHHHHHh
Q psy8246 445 SSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLPY-AVAAVADKMTGM 506 (527)
Q Consensus 445 ~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp~-m~~~v~~~L~~l 506 (527)
+++...+++.. . .+++++.+.. ..+.+++.. ...+|+|||++ |+++|++.|.++
T Consensus 330 ~l~~a~Sr~~~-~------k~yVq~~i~~~~~~~~~~l~~-~~~vYvCGp~~~M~~~V~~~L~~i 386 (416)
T cd06204 330 ELVTAFSREQP-K------KVYVQHRLAEHAEQVWELINE-GAYIYVCGDAKNMARDVEKTLLEI 386 (416)
T ss_pred EEEEEECcCCC-C------CcchHHHHHHhHHHHHHHHHc-CCEEEEECCcccchHHHHHHHHHH
Confidence 88887776542 1 1233333321 233333433 36678999998 999999999998
No 76
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.85 E-value=4.6e-21 Score=210.67 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=143.2
Q ss_pred ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe--------CCCCchHhhhc-CCCCCEEEEeccc
Q psy8246 305 YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY--------EDGLLSPLLCG-LREGQELEVSSPE 375 (527)
Q Consensus 305 ~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--------~~G~~S~~L~~-l~~Gd~v~i~GP~ 375 (527)
.+++||++.+..+ ...|+|||+|++.. ..+.++|+|++. ..|.+|.||.+ +++||.|.|.+|.
T Consensus 371 ~~~~~q~l~ll~~----l~pR~YSIaSsp~~----~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~ 442 (600)
T PRK10953 371 QLDAEQLIGLLRP----LTPRLYSIASSQAE----VENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEH 442 (600)
T ss_pred CCCHHHHHHhCCC----CCCeeeecccCCCC----CCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEecc
Confidence 4889999988654 35799999998731 456788877553 36889999986 9999999999977
Q ss_pred c-ccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCC-CchhhhHHHHHHHHhcCCCCeEeccCCC
Q psy8246 376 G-KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRT-EQDIIWRDQLDTFASKNSKPSSPRNPST 452 (527)
Q Consensus 376 G-~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~-~~di~~~~eL~~l~~~~~~~~~~~~~s~ 452 (527)
| .|.++. +...++||||+|||||||++++++..... ..+++|||++|+ ..|++|++||+++.+.....++....+|
T Consensus 443 ~~~F~lp~-~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR 521 (600)
T PRK10953 443 NDNFRLPA-NPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR 521 (600)
T ss_pred CCcccCCC-CCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence 5 698865 35689999999999999999999988765 679999999998 7899999999999987555556677777
Q ss_pred CCCcccccccccchhhhhhc--hhHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 453 EIKPLKNIISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 453 ~~~~~~g~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
+... ..++++.+. ...+.+++.. ...|||||+. .|.++|+++|.++
T Consensus 522 d~~~-------k~YVQ~~l~e~~~~l~~~l~~-ga~~YVCG~~~~M~~~V~~~L~~i 570 (600)
T PRK10953 522 DQKE-------KIYVQDKLREQGAELWRWIND-GAHIYVCGDANRMAKDVEQALLEV 570 (600)
T ss_pred CCCC-------CCcHHHHHHHHHHHHHHHHHC-CcEEEEECCCccchHHHHHHHHHH
Confidence 6421 123333332 2345555543 4678899997 5889999999988
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.84 E-value=4.4e-20 Score=199.15 Aligned_cols=171 Identities=14% Similarity=0.219 Sum_probs=128.5
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe--------CCCCchHhhh-cCCCCCEEEEec--cccccccCCCCCCccEE
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY--------EDGLLSPLLC-GLREGQELEVSS--PEGKFDVGLIGKRNKLV 390 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--------~~G~~S~~L~-~l~~Gd~v~i~G--P~G~f~~~~~~~~~~iv 390 (527)
...|+|||+|.+.. ..+.|+|+||+. ..|.+|+||+ ++++||.|.|.+ |.| |.+.. +...++|
T Consensus 314 l~pR~YSISSsP~~----~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~-~~~~PiI 387 (530)
T PRK06214 314 LQPRLYSISSSPKA----TPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPA-DPNTPII 387 (530)
T ss_pred CCcEEEEeccCCcC----CCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCC-CCCCCEE
Confidence 57899999998731 467899999865 4699999998 499999998864 555 88764 3457999
Q ss_pred EEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCC-CchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhh
Q psy8246 391 LLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRT-EQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIR 468 (527)
Q Consensus 391 lIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~-~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~ 468 (527)
|||+|||||||++++++.+... ..+++|||++|. ..|++|++||++|.+....+++....+++... ..+++
T Consensus 388 mIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~~-------k~YVQ 460 (530)
T PRK06214 388 MVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGEE-------KTYVQ 460 (530)
T ss_pred EEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCCC-------CCchh
Confidence 9999999999999999876554 578999999955 77999999999999776666666666665311 12233
Q ss_pred hhhch--hHHHhhhcCCCcEEEEcCchH-HHHHHHHHHHHh
Q psy8246 469 TTLKR--VELEDLLNSNSLVYSQLNLPY-AVAAVADKMTGM 506 (527)
Q Consensus 469 ~~~~~--~~l~~l~~~~~~~~yiCGPp~-m~~~v~~~L~~l 506 (527)
+.+.. ..+.+++. +...||||||.. |.++|++.|.++
T Consensus 461 ~~L~e~~~~l~~~l~-~~a~iYVCGp~~~M~~~V~~~L~~i 500 (530)
T PRK06214 461 DRMRENGAELWKWLE-EGAHFYVCGDAKRMAKDVERALVDI 500 (530)
T ss_pred hHHHHHHHHHHhhhc-CCcEEEEeCChHHHHHHHHHHHHHH
Confidence 33321 23333443 346788999976 559999999887
No 78
>PLN02631 ferric-chelate reductase
Probab=99.82 E-value=1.8e-19 Score=198.67 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=133.7
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
..+++++++.+++|+..+++..+.. ..+.||||++|+++..+...+||||+++.+.+ +++.++|.||. .|.+
T Consensus 308 ~~~~lv~~~~l~~d~l~l~~~~~~~--~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~----~~~~L~~~IK~--~Gg~ 379 (699)
T PLN02631 308 KRSRLVSARILPSDNLELTFSKTPG--LHYTPTSILFLHVPSISKLQWHPFTITSSSNL----EKDTLSVVIRR--QGSW 379 (699)
T ss_pred ceEEEEEEEEeCCCeEEEEEEcCCC--CcCCCCceEEEEeccCCccceEEEEEeccCCC----CCCEEEEEEEc--CChH
Confidence 3478888888999999999986543 35999999999998766778999999997521 46789999996 5899
Q ss_pred hHhhhc-CCC-CC--EEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC------CCcEEEEEEeCCCc
Q psy8246 357 SPLLCG-LRE-GQ--ELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ------RQSVQLVFFNRTEQ 426 (527)
Q Consensus 357 S~~L~~-l~~-Gd--~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~------~~~v~L~~~~r~~~ 426 (527)
|++|.+ ++. || +|.+.||||.+..+. ...++++|||||+||||+++++++++.+. ..+++|+|++|+.+
T Consensus 380 T~~L~~~l~~~g~~i~V~VeGPYG~~~~~~-~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~ 458 (699)
T PLN02631 380 TQKLYTHLSSSIDSLEVSTEGPYGPNSFDV-SRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH 458 (699)
T ss_pred HHHHHHhhhcCCCeeEEEEECCCCCCCCCc-CCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH
Confidence 999977 654 45 677889999876443 35789999999999999999999998653 13799999999999
Q ss_pred hhhhHHHHHHHHh-----cCCCCeEeccCCCC
Q psy8246 427 DIIWRDQLDTFAS-----KNSKPSSPRNPSTE 453 (527)
Q Consensus 427 di~~~~eL~~l~~-----~~~~~~~~~~~s~~ 453 (527)
|+.+.|||+.++. +..++++....+|+
T Consensus 459 dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~ 490 (699)
T PLN02631 459 DLAFLDLIFPLDISVSDISRLNLRIEAYITRE 490 (699)
T ss_pred HhhhHHHHhhhccchhhhhcCceEEEEEEcCC
Confidence 9999999987311 12367765555553
No 79
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.81 E-value=1.5e-18 Score=192.49 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=142.1
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHh
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL 359 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~ 359 (527)
.+++++..++++..+++..+. .+.|.||||++|+++..+...+||||++|.+.. +++.++|.||.. |.+|+.
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~~--~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~----~~~~l~~~IK~~--gG~T~~ 386 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKDP--GLKYAPTSVIFMKIPSISRFQWHPFSITSSSNI----DDHTMSVIIKCE--GGWTNS 386 (722)
T ss_pred EEEEEEEecCCEEEEEEECCC--CCCcCCCeeEEEEECCCCceeEEEEEeecCCCC----CCCeEEEEEEeC--CCchHH
Confidence 455667778888777776654 345999999999998767778999999996521 567899999984 666766
Q ss_pred hhc-----CCCC------CEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC------CCcEEEEEEe
Q psy8246 360 LCG-----LREG------QELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ------RQSVQLVFFN 422 (527)
Q Consensus 360 L~~-----l~~G------d~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~------~~~v~L~~~~ 422 (527)
|.+ +++| .++.|.||+|.+..+. ...++++|||||+||||++++++++.... ..++.|+|++
T Consensus 387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~-~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~v 465 (722)
T PLN02844 387 LYNKIQAELDSETNQMNCIPVAIEGPYGPASVDF-LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVV 465 (722)
T ss_pred HHHHHHhhccCCCCcccceEEEEECCccCCCCCc-cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEE
Confidence 643 3345 3789999999986544 35689999999999999999999998653 2589999999
Q ss_pred CCCchhhhHHHHHHHH-h---cCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhh--hcCCCcEEEEcCchHH
Q psy8246 423 RTEQDIIWRDQLDTFA-S---KNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL--LNSNSLVYSQLNLPYA 495 (527)
Q Consensus 423 r~~~di~~~~eL~~l~-~---~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l--~~~~~~~~yiCGPp~m 495 (527)
|+.+|+.+.+++.... + +..+++++...+++... ..++.+.+....+.+- .+.+...+.+|||...
T Consensus 466 R~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~-------~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~ 537 (722)
T PLN02844 466 KKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKP-------NATLRELLNQFSQVQTVNFSTKCSRYAIHGLESF 537 (722)
T ss_pred CCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCC-------CCchhhHhhccchhhhcCCCCCCCceEEeCCCch
Confidence 9999999999986321 1 11356666666766532 1144444433222111 2334444669999873
No 80
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.80 E-value=6.7e-19 Score=149.38 Aligned_cols=98 Identities=26% Similarity=0.500 Sum_probs=88.5
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
+++|++++.++++++.|+|+++++.. +.|.|||||.|+++.+|....|+|||++.+. +.+.++|+||.+++|.+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-----~~~~~~~~ik~~~~G~~ 75 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-----DKGYLEFAIKRYPNGRV 75 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-----SSSEEEEEEEECTTSHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-----CCCcEEEEEEeccCCHH
Confidence 48999999999999999999986543 5699999999999988889999999999874 67899999999999999
Q ss_pred hHhhhcCCCCCEEEEecccccccc
Q psy8246 357 SPLLCGLREGQELEVSSPEGKFDV 380 (527)
Q Consensus 357 S~~L~~l~~Gd~v~i~GP~G~f~~ 380 (527)
|+||+++++||.|.|+||+|+|.|
T Consensus 76 S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 76 SRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp HHHHHTSCTTSEEEEEEEESSEEE
T ss_pred HHHHHhCCCCCEEEEEEcccccCC
Confidence 999999999999999999999964
No 81
>KOG3378|consensus
Probab=99.79 E-value=3.2e-19 Score=170.39 Aligned_cols=222 Identities=18% Similarity=0.191 Sum_probs=149.8
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcC--cccCCccEEEEEEEeCCe----eeeeeeeccCCCCCCCCCCCCEEEEEE
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMF--FYVPVGHHVFIKFIVNDV----DISKPYTPVEPLQAAPLSYSNTLTFLI 348 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~--~~~~pGQ~v~l~~~~~g~----~~~R~YT~~s~~~~~~~~~~~~l~l~I 348 (527)
.|.+++|++.+.++.|+..|++.+..+.. ....|||||.+.....|. ...|.||..+.. -.+.|+|.|
T Consensus 148 G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t------~rN~~R~sV 221 (385)
T KOG3378|consen 148 GEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDT------CRNQFRISV 221 (385)
T ss_pred CccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhh------hccceeEEE
Confidence 46789999999999999999999766532 348899999998877664 234556665543 567899999
Q ss_pred EEeCCCCchHhhhc-CCCCCEEEEeccccccccCC--CCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCC
Q psy8246 349 KSYEDGLLSPLLCG-LREGQELEVSSPEGKFDVGL--IGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTE 425 (527)
Q Consensus 349 K~y~~G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~--~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~ 425 (527)
|+..+|.+|+|+|+ +++||.|.++.|-|+|.+.. .+...+++++|||+||||+++|++..+.-. .+|
T Consensus 222 r~~A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~--------~~R-- 291 (385)
T KOG3378|consen 222 RRVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY--------SSR-- 291 (385)
T ss_pred eehhchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC--------CCC--
Confidence 99999999999998 99999999999999999864 245689999999999999999999876432 333
Q ss_pred chhhhHHHHHHHHhcC-CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHH
Q psy8246 426 QDIIWRDQLDTFASKN-SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMT 504 (527)
Q Consensus 426 ~di~~~~eL~~l~~~~-~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~ 504 (527)
.++..++++..++ .+.+.....+.+....+..+ ........+..+.++.+-. ...++|.|||-.+|+++...|.
T Consensus 292 ---P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~I-V~~~~~~iI~~~~L~~~~~-s~~DiY~~G~~~~M~~~~~~L~ 366 (385)
T KOG3378|consen 292 ---PFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQI-VDEVMTRIINEEDLEKLDL-SECDIYMLGPNNYMRFVKQELV 366 (385)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh-hhhhhhhhcCHHHhhhcCh-hhCceeeeCcHHHHHHHHHHHH
Confidence 2333333333221 12222111111111100000 0000111233334443322 2356779999999999999999
Q ss_pred Hh---hhhcCCCCCCC
Q psy8246 505 GM---ENKMNPEIPPN 517 (527)
Q Consensus 505 ~l---~~~m~~~~~~~ 517 (527)
++ .+++..|-+++
T Consensus 367 ~L~~~~~~v~~E~FGP 382 (385)
T KOG3378|consen 367 KLGVEPNKVQSEFFGP 382 (385)
T ss_pred HhcCCccceeccccCC
Confidence 99 55556665543
No 82
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.77 E-value=2.1e-19 Score=145.06 Aligned_cols=73 Identities=42% Similarity=0.672 Sum_probs=67.2
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhh-hccCCchhHHHhhhc-CeeeEeC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELF-NKVHPWVNYESILQK-CIVGKMG 123 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f-~~~h~~~~~~~~l~~-~~vG~l~ 123 (527)
||++||++|+..++|||+|+|+|||||+|+..||||...|..++|+|+|+.| ...|+ ..++++|++ |+||+|+
T Consensus 2 ~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~-~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 2 YTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHS-WWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHH-HHHHHHHHGCGEEEEE-
T ss_pred CCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCc-HHHHHHccCCCEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999 66666 677789998 9999984
No 83
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.76 E-value=5.4e-19 Score=158.79 Aligned_cols=111 Identities=29% Similarity=0.513 Sum_probs=101.3
Q ss_pred CCCccccCCCCCCcchhhhhccCCCCCCCCCCCcccCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccc
Q psy8246 15 NPRNKTALKPGHSLMDWIRLGNSGVNLSGIQGRILVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAG 94 (527)
Q Consensus 15 ~~~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG 94 (527)
.+++++..-++++...|..+....+++...+....++.+|+.+|++.++|||+|+|+|||||.|+.+||||.++|+.++|
T Consensus 17 ~~~~~~~~~~d~~~~~~~~~~~~~~di~~~~~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g 96 (164)
T COG5274 17 KYTNKLYAGKDHAALDWDSLVQEHADILNDESPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAG 96 (164)
T ss_pred CcceeeecCccHHHHhHHHhhcchhhhccCCccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccC
Confidence 34999999999999999988888788877664444999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCchhHHHhhhcCeeeEeCCC
Q psy8246 95 MDATELFNKVHPWVNYESILQKCIVGKMGSS 125 (527)
Q Consensus 95 ~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~ 125 (527)
+|+|+.|...||+..+.++|+.++||.+...
T Consensus 97 ~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 97 KDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred chhhhhhcccccchhHHhhhhceeeecccCc
Confidence 9999999999998888889999999998655
No 84
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.9e-18 Score=182.81 Aligned_cols=174 Identities=14% Similarity=0.182 Sum_probs=139.1
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe--C------CCCchHhhhcCCC-CCEEEEecccc-ccccCCCCCCccEEE
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY--E------DGLLSPLLCGLRE-GQELEVSSPEG-KFDVGLIGKRNKLVL 391 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--~------~G~~S~~L~~l~~-Gd~v~i~GP~G-~f~~~~~~~~~~ivl 391 (527)
...|-|||+|++.- ..+.++|+|.+. . .|..|.||.++.. ||.|.|....+ +|.++.. ..+++||
T Consensus 371 lkPR~YSIsSs~~~----~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~-~~~PiIM 445 (587)
T COG0369 371 LKPRLYSIASSPGV----SPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPED-PETPIIM 445 (587)
T ss_pred CCCeeeEeccCCCC----CCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCCC-CCCceEE
Confidence 46799999998741 456677766664 2 4779999999655 99999996665 7988773 4499999
Q ss_pred EEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCC-CchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhh
Q psy8246 392 LAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRT-EQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRT 469 (527)
Q Consensus 392 IAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~-~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~ 469 (527)
|+.|||||||.+++++..... ..+++||||+|+ ..|++|++|++++.+....+++....+|+... ..+.+.++.
T Consensus 446 IG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~---KiYVQd~lr- 521 (587)
T COG0369 446 IGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEE---KIYVQDRLR- 521 (587)
T ss_pred EcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCC---CccHHHHHH-
Confidence 999999999999999999887 568999999999 88999999999988776678888888887632 233333331
Q ss_pred hhchhHHHhhhcCCCcEEEEcC-chHHHHHHHHHHHHh
Q psy8246 470 TLKRVELEDLLNSNSLVYSQLN-LPYAVAAVADKMTGM 506 (527)
Q Consensus 470 ~~~~~~l~~l~~~~~~~~yiCG-Pp~m~~~v~~~L~~l 506 (527)
...+.+.++++.+ ..+|||| ...|.+.|.++|.++
T Consensus 522 -e~~del~~~l~~g-a~~YVCGd~~~Ma~dV~~AL~~i 557 (587)
T COG0369 522 -EQADELWEWLEEG-AHIYVCGDAKGMAKDVEEALLDI 557 (587)
T ss_pred -HhHHHHHHHHHCC-CEEEEeCCCccchHHHHHHHHHH
Confidence 2345678888877 7788999 999999999999998
No 85
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.74 E-value=9.7e-18 Score=144.37 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=80.4
Q ss_pred EEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHHHHHHhcCCC-CeEeccCCCCCCcccccccccchhh
Q psy8246 391 LLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFASKNSK-PSSPRNPSTEIKPLKNIISFLMRIR 468 (527)
Q Consensus 391 lIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~-~~~~~~~s~~~~~~~g~~~~~~ri~ 468 (527)
|||||||||||+++++++++.+ ..+++|+|++|+.+|++|+++|++++++.++ |.+........ +.....+++.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~ 76 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYVSSPDD----GWDGFKGRVT 76 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEETTTTS----STTSEESSHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhccccccccccccccc----ccCCceeehh
Confidence 7999999999999999999876 7899999999999999999999999987654 66654422221 1112345565
Q ss_pred hhhchhHHHhhhcCCCcEEEEcCchHHHHHHHH
Q psy8246 469 TTLKRVELEDLLNSNSLVYSQLNLPYAVAAVAD 501 (527)
Q Consensus 469 ~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~ 501 (527)
..+....+....+.....+|+|||++|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 77 DLLLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred HHHHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 555443333233345678889999999999875
No 86
>KOG1158|consensus
Probab=99.66 E-value=6.3e-16 Score=167.93 Aligned_cols=177 Identities=17% Similarity=0.231 Sum_probs=132.0
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC--------CCchHhhhcCCCCCEEEEeccccc--cccCCCCCCccEE
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED--------GLLSPLLCGLREGQELEVSSPEGK--FDVGLIGKRNKLV 390 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~--------G~~S~~L~~l~~Gd~v~i~GP~G~--f~~~~~~~~~~iv 390 (527)
....|.|||+|++.- .++.-.+.+.|..|.. |..|+||.++++|+.+..-+|.+. |.++. +...+++
T Consensus 419 ~L~pR~YSIssS~~~--~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~-dp~~PiI 495 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKV--HPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPS-DPSTPII 495 (645)
T ss_pred cccccccccccCccc--CCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceecCC-CCCCcEE
Confidence 457899999997731 1134445555544433 778999999999999886666666 44443 4568999
Q ss_pred EEEecCCchhHHHHHHHHHHhC------CCcEEEEEEeCCCchh-hhHHHHHHHHhcCCCCeEeccCCCCCCcccccccc
Q psy8246 391 LLAAGTGLTPMIPVINWSIQSQ------RQSVQLVFFNRTEQDI-IWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISF 463 (527)
Q Consensus 391 lIAgGtGItP~l~ll~~l~~~~------~~~v~L~~~~r~~~di-~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~ 463 (527)
|||.|||||||+++++..+... ..-++||+|+|+.++. +|++|++++.+....+++....||+..+.
T Consensus 496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~------ 569 (645)
T KOG1158|consen 496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPK------ 569 (645)
T ss_pred EEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCC------
Confidence 9999999999999999988763 2228999999997755 99999999976667788888888886321
Q ss_pred cchhhhhh--chhHHHhhhcCCCcEEEEcCchH-HHHHHHHHHHHh
Q psy8246 464 LMRIRTTL--KRVELEDLLNSNSLVYSQLNLPY-AVAAVADKMTGM 506 (527)
Q Consensus 464 ~~ri~~~~--~~~~l~~l~~~~~~~~yiCGPp~-m~~~v~~~L~~l 506 (527)
..++++.+ ..+.+.+++..+...+||||... |.++|.++|.++
T Consensus 570 k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i 615 (645)
T KOG1158|consen 570 KIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRI 615 (645)
T ss_pred ceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHH
Confidence 12233322 23456677766567788999999 999999999998
No 87
>KOG0039|consensus
Probab=99.64 E-value=3.5e-15 Score=165.68 Aligned_cols=220 Identities=13% Similarity=0.174 Sum_probs=153.5
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL 355 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~ 355 (527)
....++.+..-+..|+..+++..|.. +.+.||||++|.++.-....+||||++|.+ +++.+.++||. .|.
T Consensus 354 ~~~~~i~~~~llp~~vi~L~~~Kp~~--f~y~~Gqyifv~~p~ls~~qwHPFTItSsp------~dd~lsvhIk~--~g~ 423 (646)
T KOG0039|consen 354 QKNVKIAKVVLLPSDVLELIMSKPPG--FKYKPGQYIFVNCPSLSKLEWHPFTITSAP------EDDFLSVHIKA--LGD 423 (646)
T ss_pred hcCceEEEEEEcCCCeEEEEEeCCCC--CCCCCCCEEEEECccccccccCCceeecCC------CCCEEEEEEEe--cCc
Confidence 34589999999999999999998854 449999999999988788999999999987 78999999997 599
Q ss_pred chHhhhc-CC------------CCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC----------
Q psy8246 356 LSPLLCG-LR------------EGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ---------- 412 (527)
Q Consensus 356 ~S~~L~~-l~------------~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~---------- 412 (527)
+|+.|.+ +. ..-.+.|.||||.-..+- ..++.++||+||+|+||+++++++++.+.
T Consensus 424 wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~-~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~ 502 (646)
T KOG0039|consen 424 WTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDV-FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTS 502 (646)
T ss_pred HHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhh-hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccc
Confidence 9988876 33 134789999999866333 46789999999999999999999998754
Q ss_pred -------CCcEEEEEEeCCCchhhh-HHHHHHHHhc--CCCCeEeccCCC----CCCc-------------cccccccc-
Q psy8246 413 -------RQSVQLVFFNRTEQDIIW-RDQLDTFASK--NSKPSSPRNPST----EIKP-------------LKNIISFL- 464 (527)
Q Consensus 413 -------~~~v~L~~~~r~~~di~~-~~eL~~l~~~--~~~~~~~~~~s~----~~~~-------------~~g~~~~~- 464 (527)
..++.++|.+|...+..| .+.+.++... .+-..++...+. .+.. ..+.....
T Consensus 503 ~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g 582 (646)
T KOG0039|consen 503 DYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTG 582 (646)
T ss_pred cccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccccc
Confidence 246889999888877754 4444444432 111222111110 0000 00000000
Q ss_pred chhhhhhchhHHHhhhcC----C---CcEEEEcCchHHHHHHHHHHHHh
Q psy8246 465 MRIRTTLKRVELEDLLNS----N---SLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 465 ~ri~~~~~~~~l~~l~~~----~---~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
.+.....+++++.++... . ...++.|||+.|.+.+++.+.+.
T Consensus 583 ~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~ 631 (646)
T KOG0039|consen 583 LKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDF 631 (646)
T ss_pred ceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 112223344444443321 1 14667999999999999999885
No 88
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.61 E-value=6.5e-16 Score=166.52 Aligned_cols=80 Identities=25% Similarity=0.492 Sum_probs=71.5
Q ss_pred CCCcc-cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeC
Q psy8246 45 QGRIL-VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMG 123 (527)
Q Consensus 45 ~~~~~-~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~ 123 (527)
+++++ +|++|+++|++++||||+|+|+|||||+|+ .||||. +|+.++|+|+|+.|+++|+. .++++|++|+||+|.
T Consensus 20 ~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~-~~~~~l~~~~iG~l~ 96 (485)
T PLN03199 20 AEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAP-GSQALMKKFYIGDLI 96 (485)
T ss_pred CccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCH-HHHHHHHhccccccc
Confidence 34555 999999999999999999999999999997 899997 88899999999999999875 467799999999997
Q ss_pred CCCC
Q psy8246 124 SSLP 127 (527)
Q Consensus 124 ~~~~ 127 (527)
+++.
T Consensus 97 ~~~~ 100 (485)
T PLN03199 97 PEST 100 (485)
T ss_pred cccc
Confidence 6544
No 89
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.59 E-value=5.4e-16 Score=167.59 Aligned_cols=75 Identities=31% Similarity=0.526 Sum_probs=69.7
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSL 126 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~ 126 (527)
||++|+++|++.+||||+|+|+|||||+|++.||||. .|..++|+|+|+.|+++|+... .++|++|+||+|++.+
T Consensus 106 ~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H~~~~-~~~l~~~~IG~l~~~~ 180 (526)
T PLN03198 106 HLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFHAAST-WKILQDFYIGDVDNVE 180 (526)
T ss_pred CCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhcCHHH-HHHHhhCcceecCCcc
Confidence 9999999999999999999999999999999999997 8999999999999999998654 5699999999997643
No 90
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.52 E-value=3.4e-13 Score=152.41 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=103.2
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCC--e-eeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVND--V-DISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g--~-~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
..++|++++.++++++.+++..|.... .++|||||+|+.+..+ . ...||+|+++.+. +.+.++|+++..
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~iA~-~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-----e~g~It~i~rvV-- 862 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLAAK-NFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-----EKGLISFIVFEV-- 862 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcchhh-cCCCCceEEEEeCCCCCccccCceeEEeeccCC-----CCCEEEEEEEEE--
Confidence 578999999999999999998875322 3789999999974323 2 2456899988753 678999999986
Q ss_pred CCchHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEE
Q psy8246 354 GLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVF 420 (527)
Q Consensus 354 G~~S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~ 420 (527)
|..|..|+++++||.|.|.||+|+ |.... .+++++||||+|++| +++++.+.+ .+|..+.
T Consensus 863 GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~~---~k~vLLVgGGVGiAp---Lak~Lk~~G-~~V~~~~ 923 (1028)
T PRK06567 863 GKSTSLCKTLSENEKVVLMGPTGSPLEIPQ---NKKIVIVDFEVGNIG---LLKVLKENN-NEVIFVT 923 (1028)
T ss_pred ChHHHHHhcCCCCCEEEEEcccCCCCCCCC---CCeEEEEEccccHHH---HHHHHHHCC-CeEEEEE
Confidence 999999999999999999999998 66532 468999999999997 556665554 4555444
No 91
>KOG1159|consensus
Probab=99.50 E-value=1.9e-13 Score=140.70 Aligned_cols=169 Identities=17% Similarity=0.250 Sum_probs=126.7
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEE
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLL 392 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlI 392 (527)
...|.|||+|.+ ..-.++|+|-++ ..|..|+||.+|++|++|.+.--.|.+.++. ....+++||
T Consensus 366 IrPR~fSIas~~------~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p~-~~~~PlImV 438 (574)
T KOG1159|consen 366 IRPRAFSIASSP------GAHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFPS-DLNKPLIMV 438 (574)
T ss_pred cccceeeeccCC------CCCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccCC-CCCCCeEEE
Confidence 467999999987 334488766654 3799999999999999999887778877655 356899999
Q ss_pred EecCCchhHHHHHHHHHHhCCCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhh
Q psy8246 393 AAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTL 471 (527)
Q Consensus 393 AgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~ 471 (527)
+-||||||+.+++++..........|||++|+. .|++|.++..++.+. ..+...+|+... ....+..+ ..
T Consensus 439 GPGTGvAPfRa~i~er~~q~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~----~~~~AFSRDqe~---kvYVQh~i--~e 509 (574)
T KOG1159|consen 439 GPGTGVAPFRALIQERIYQGDKENVLFFGCRNKDKDFLYEDEWTELNKR----AFHTAFSRDQEQ---KVYVQHKI--RE 509 (574)
T ss_pred cCCCCcccHHHHHHHHHhhccCCceEEEecccCCccccccchhhhhhcc----hhhhhccccccc---ceeHHHHH--HH
Confidence 999999999999998885444566889999996 488999877776533 234456666531 12222222 11
Q ss_pred chhHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 472 KRVELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 472 ~~~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
....+.+++...++.|||||+. .|-.+|+.+|.++
T Consensus 510 ~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI 545 (574)
T KOG1159|consen 510 NGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEI 545 (574)
T ss_pred hhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHH
Confidence 2345667777778889999988 6999999999998
No 92
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.31 E-value=2.9e-12 Score=117.54 Aligned_cols=118 Identities=21% Similarity=0.335 Sum_probs=68.1
Q ss_pred CccEEEEEecCCchhHHHHHHHHHHhC------CCcEEEEEEeCCCchhh-hHHHHHHHHhcC--CCCeEeccCCCCCCc
Q psy8246 386 RNKLVLLAAGTGLTPMIPVINWSIQSQ------RQSVQLVFFNRTEQDII-WRDQLDTFASKN--SKPSSPRNPSTEIKP 456 (527)
Q Consensus 386 ~~~ivlIAgGtGItP~l~ll~~l~~~~------~~~v~L~~~~r~~~di~-~~~eL~~l~~~~--~~~~~~~~~s~~~~~ 456 (527)
+++++|||||+||||+++++++++... .++|+|+|.+|+.+++. +.++|+++.... .++++....+++...
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 468999999999999999999998653 57999999999999885 555666555431 356554433322111
Q ss_pred ccccc---c---------cc---------chhhhhhchhHHHhhhc-------CCCcEEEEcCchHHHHHHHHHH
Q psy8246 457 LKNII---S---------FL---------MRIRTTLKRVELEDLLN-------SNSLVYSQLNLPYAVAAVADKM 503 (527)
Q Consensus 457 ~~g~~---~---------~~---------~ri~~~~~~~~l~~l~~-------~~~~~~yiCGPp~m~~~v~~~L 503 (527)
..... . .. ..+.....+..+.+++. .....+++|||++|+++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 00000 0 00 01222334445544432 1245667999999999999875
No 93
>KOG4232|consensus
Probab=99.26 E-value=1.6e-12 Score=132.70 Aligned_cols=78 Identities=29% Similarity=0.622 Sum_probs=71.3
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchh-HHHhhhcCeeeEeCCCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVN-YESILQKCIVGKMGSSLPD 128 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~-~~~~l~~~~vG~l~~~~~~ 128 (527)
++++++.+|++.++.|++|+| |||+|+|+..||||...|..++|+|||+.|.++|...+ +...|+..++|...++.+.
T Consensus 10 ~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~~~~pe~~~ 88 (430)
T KOG4232|consen 10 FSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIGELSPEIPS 88 (430)
T ss_pred eeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcCCcCccccc
Confidence 999999999999999999999 99999999999999999999999999999999997654 4568888999998877553
No 94
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.2e-09 Score=107.15 Aligned_cols=206 Identities=14% Similarity=0.064 Sum_probs=146.7
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCcCc-c-cCCccEEEEEEEeCCe--------------------eeeeeeec
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPMFF-Y-VPVGHHVFIKFIVNDV--------------------DISKPYTP 329 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~-~-~~pGQ~v~l~~~~~g~--------------------~~~R~YT~ 329 (527)
...+++.++|+.++.+|++..+|+|..+....+ . ...+|||.|-++.++. ...|.|||
T Consensus 13 ~~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTi 92 (265)
T COG2375 13 LGPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTI 92 (265)
T ss_pred ccccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccccee
Confidence 345678999999999999999999999876553 2 3455599999876433 34899999
Q ss_pred cCCCCCCCCCCCCEEEEEEEEe-CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHH
Q psy8246 330 VEPLQAAPLSYSNTLTFLIKSY-EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWS 408 (527)
Q Consensus 330 ~s~~~~~~~~~~~~l~l~IK~y-~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l 408 (527)
...+. +.++|.+-+-.. ++|..|.|..++++||+|.|.||.|.+.... ....++||+--|++-.|..+|+.+
T Consensus 93 R~~d~-----~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~~--~~~~~lLigDetAlPAIa~iLE~l 165 (265)
T COG2375 93 RAVDA-----AAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLVPPE--AADWYLLIGDETALPAIARILETL 165 (265)
T ss_pred eeecc-----cccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCCCCC--CcceEEEeccccchHHHHHHHHhC
Confidence 86643 677777766665 7899999999999999999999999966554 678999999999999999999887
Q ss_pred HHhCCCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCC-CcEE
Q psy8246 409 IQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSN-SLVY 487 (527)
Q Consensus 409 ~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~-~~~~ 487 (527)
-.. .+.+.+....+..|. .++ . ..+.+.+.-....... ...+....+.+..... ...+
T Consensus 166 p~~--~~~~a~lev~d~ad~---~~l---~-~~~~l~~~Wl~r~~~~------------~~~ll~~a~~~~~~P~~~~~v 224 (265)
T COG2375 166 PAD--TPAEAFLEVDDAADR---DEL---P-SPDDLELEWLARDDAP------------TEQLLAAALAQAALPAGDYYV 224 (265)
T ss_pred CCC--CceEEEEEeCChHHh---hcc---C-CCCceeEEEecCCCcc------------chHHHHHHHhcccCCCCceEE
Confidence 644 456777777777664 111 1 1234444322111110 0111222233322222 3567
Q ss_pred EEcCchHHHHHHHHHHHH
Q psy8246 488 SQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 488 yiCGPp~m~~~v~~~L~~ 505 (527)
+|.|-.++++++++.|++
T Consensus 225 wiagE~~~v~~~Rk~L~~ 242 (265)
T COG2375 225 WIAGEASAVKAIRKFLRN 242 (265)
T ss_pred EEeccHHHHHHHHHHHhh
Confidence 799999999999999987
No 95
>KOG4576|consensus
Probab=99.17 E-value=1.5e-11 Score=105.62 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=63.1
Q ss_pred cCHHHHhcccCCCC-eEEEEcCEEEecccCccccccccccccccccc--ccchhhhccCCchhHHHhhhcCeeeEeCCCC
Q psy8246 50 VSKAQLAEHNKEDD-MWMCIRGVVYNVTRYMDFHPGGREELMRGAGM--DATELFNKVHPWVNYESILQKCIVGKMGSSL 126 (527)
Q Consensus 50 ~t~~e~~~h~~~~~-~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~--D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~ 126 (527)
|+.+|+++|++.++ -||.+...|||||+|.+.||||.+ |+..||. |-...+.+.|......++|+.|+||.|.+.+
T Consensus 82 Y~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdK-illAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L~~~d 160 (167)
T KOG4576|consen 82 YTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDK-ILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGELNPED 160 (167)
T ss_pred hhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcce-eeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccCChhh
Confidence 99999999998665 999999999999999999999955 5555555 3333344568777888899999999999876
Q ss_pred C
Q psy8246 127 P 127 (527)
Q Consensus 127 ~ 127 (527)
.
T Consensus 161 v 161 (167)
T KOG4576|consen 161 V 161 (167)
T ss_pred c
Confidence 5
No 96
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.88 E-value=2.2e-10 Score=98.35 Aligned_cols=91 Identities=24% Similarity=0.283 Sum_probs=6.2
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCC--eeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCC
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVND--VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGL 355 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g--~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~ 355 (527)
.+++.+++.+..|++.+++..+... +.|.|||||+|+++..+ ...+||||+++.+ +.+.+.|+||.+ |.
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~-~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~------~~~~i~l~ik~~--g~ 73 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSP-FKWKPGQYVFLSFPSISKWFWQWHPFTIASSP------EDNSITLIIKAR--GG 73 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCC-CCCCCceEEEEEEcCcCcCcccccccEeeccC------CCCEEEEEEEeC--CC
Confidence 3577888889999999999987642 45999999999998666 4589999999987 688999999974 88
Q ss_pred chHhhhcC--------CCCCEEEEeccccc
Q psy8246 356 LSPLLCGL--------REGQELEVSSPEGK 377 (527)
Q Consensus 356 ~S~~L~~l--------~~Gd~v~i~GP~G~ 377 (527)
+|+.|.+. ..+-.+.|.||||.
T Consensus 74 ~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 74 WTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp -----------------------TTSTTSH
T ss_pred chHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 89888763 23346788899996
No 97
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.79 E-value=2.2e-08 Score=87.62 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=63.6
Q ss_pred EEEEEEEecCCEEEEEEEeCCCcCcc-cCCccEEEEEEEeCCee---------------------eeeeeeccCCCCCCC
Q psy8246 280 RLLHQEQVTHNVVLITLEYTSPMFFY-VPVGHHVFIKFIVNDVD---------------------ISKPYTPVEPLQAAP 337 (527)
Q Consensus 280 ~v~~~~~vs~d~~~~~~~~p~~~~~~-~~pGQ~v~l~~~~~g~~---------------------~~R~YT~~s~~~~~~ 337 (527)
+|++++.+++++++++|..++...+. ..+||||.|.++.++.. ..|.||+...+.
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~--- 77 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP--- 77 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET---
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC---
Confidence 58999999999999999987755543 57999999999875542 689999988763
Q ss_pred CCCCCEEEEEEEEeCC-CCchHhhhcCCCCCEEEEecccccc
Q psy8246 338 LSYSNTLTFLIKSYED-GLLSPLLCGLREGQELEVSSPEGKF 378 (527)
Q Consensus 338 ~~~~~~l~l~IK~y~~-G~~S~~L~~l~~Gd~v~i~GP~G~f 378 (527)
+.++|.|-+-...+ |..+.|+.++++||.|.|.||.|.|
T Consensus 78 --~~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 78 --ETGELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp --T--EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred --CCCEEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 67888887776655 8899999999999999999999987
No 98
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=98.67 E-value=1.3e-07 Score=78.22 Aligned_cols=82 Identities=32% Similarity=0.690 Sum_probs=65.1
Q ss_pred cceEeecCcEEEEEEecc--C-CCceEEecCCCceEEEEEEcCeeeee--eccCCcccceeEEEeeeeeEEEEEEccccc
Q psy8246 172 MDWFQQLNFICFVFYLKS--S-CPKVLITLNENNTDLSLLINERSLLL--HLEQPVKWPCQVKINLNVGKLQLQLNKEEA 246 (527)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (527)
+||+|+++.|+|.+|++. . ...+.++..++++++++.+++..|.+ +|.+.+.+.+.+++....+|+|+.|.|.++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPCEVRISTETGKIELVLKKKEP 80 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCcEEEEcccCceEEEEEEcCCC
Confidence 599999999999999986 2 34456667767888887776655544 588888765567777778999999999988
Q ss_pred ccccccC
Q psy8246 247 KLWKHHS 253 (527)
Q Consensus 247 ~~w~~~~ 253 (527)
..|.++|
T Consensus 81 ~~W~~Lg 87 (87)
T cd06490 81 EKWTSLG 87 (87)
T ss_pred CccccCc
Confidence 9998875
No 99
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.48 E-value=2.4e-07 Score=70.75 Aligned_cols=73 Identities=25% Similarity=0.441 Sum_probs=55.1
Q ss_pred cCHHHHhcccCCC-CeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcC-eeeEeCCC
Q psy8246 50 VSKAQLAEHNKED-DMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKC-IVGKMGSS 125 (527)
Q Consensus 50 ~t~~e~~~h~~~~-~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~-~vG~l~~~ 125 (527)
||++|+.+.|.++ ..+|.++|+||||+.-..+-- |...-++-+|+|.|++|++.|.- .+ ++|+.| .||.|..+
T Consensus 4 fTLEELs~ynG~nGpaYiA~~G~VYDvS~s~~W~d-GtHqglhsaG~DLs~~~~~~aph-g~-eil~~~PvVG~L~k~ 78 (81)
T COG4892 4 FTLEELSKYNGENGPAYIAVNGTVYDVSLSPSWGD-GTHQGLHSAGKDLSSEFNSCAPH-GM-EILTSLPVVGALIKE 78 (81)
T ss_pred ecHHHHHhhcCCCCCeEEEECCEEEeeccCcccCC-CccccccccchhHHHHHhhcCCc-hh-HHHhcCchhheeecc
Confidence 8999999999755 599999999999997643322 32333455899999999976652 33 588888 78988654
No 100
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.70 E-value=0.0002 Score=59.09 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=59.4
Q ss_pred ccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEcC-eeeee--eccCCcccceeEEEeeeeeEEEEEEccccc
Q psy8246 171 SMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLINE-RSLLL--HLEQPVKWPCQVKINLNVGKLQLQLNKEEA 246 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (527)
|+||+|+++.|+|.+|.+. .++.+.+...++++.+.+.+++ ..|.+ +|.+++... ..+......++++.|.|.++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~-~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVE-KSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChh-HcEEEecCcEEEEEEEeCCC
Confidence 6899999999999999987 6666666777777777665543 23444 577777522 24555666899999999887
Q ss_pred cccccc
Q psy8246 247 KLWKHH 252 (527)
Q Consensus 247 ~~w~~~ 252 (527)
..|.++
T Consensus 81 ~~W~~L 86 (87)
T cd06488 81 GSWAKL 86 (87)
T ss_pred CcCccC
Confidence 888753
No 101
>KOG1110|consensus
Probab=96.88 E-value=0.0024 Score=58.75 Aligned_cols=51 Identities=31% Similarity=0.466 Sum_probs=41.4
Q ss_pred cCHHHHhcccCCC---CeEEEEcCEEEecccCcc-cccccccccccccccccchhhh
Q psy8246 50 VSKAQLAEHNKED---DMWMCIRGVVYNVTRYMD-FHPGGREELMRGAGMDATELFN 102 (527)
Q Consensus 50 ~t~~e~~~h~~~~---~~wvii~g~VYDvt~f~~-~HPGG~~~l~~~aG~D~T~~f~ 102 (527)
||.+||++.+... .-++.|+|+|||||.=-. +-|||.- -.+||+||+....
T Consensus 58 fT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La 112 (183)
T KOG1110|consen 58 FTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLA 112 (183)
T ss_pred cCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHH
Confidence 9999999988655 488999999999996433 5899975 5579999998653
No 102
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.86 E-value=0.0048 Score=50.11 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=56.3
Q ss_pred ceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc-Ceeee--eeccCCcccceeEEEeeeeeEEEEEEccccccc
Q psy8246 173 DWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN-ERSLL--LHLEQPVKWPCQVKINLNVGKLQLQLNKEEAKL 248 (527)
Q Consensus 173 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (527)
||+|+.+.++|.++.+. .+..+.+...++.+.+.+..+ +..|. +.|.+.|... ..+.....+++++.|.|.++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~-~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPE-QSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCch-hcEEEEeCeEEEEEEEcCCCCC
Confidence 79999999999999876 444455566667777776654 43444 3477777532 3455566688999999987788
Q ss_pred cccc
Q psy8246 249 WKHH 252 (527)
Q Consensus 249 w~~~ 252 (527)
|.++
T Consensus 80 W~~L 83 (84)
T cd06466 80 WPSL 83 (84)
T ss_pred CccC
Confidence 8765
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.82 E-value=0.0032 Score=65.87 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=62.1
Q ss_pred CCccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEcCe-eeee--eccCCcc-cceeEEEeeeeeEEEEEEcc
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLINER-SLLL--HLEQPVK-WPCQVKINLNVGKLQLQLNK 243 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~l~~~~~-~~~~~~~~~~~~~~~~~l~~ 243 (527)
.+|+||+|+++.|+|.+|.+. .++.+.+++.++++.+.+.+.+. .|.+ +|.+.|. +.|.+++ ...|++|.|.|
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v--~~~Kiei~l~K 233 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEV--LSTKIEIRLAK 233 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEE--ecceEEEEEec
Confidence 379999999999999999998 66777788888888887766432 3444 5777775 3344444 44599999999
Q ss_pred cccccccccC
Q psy8246 244 EEAKLWKHHS 253 (527)
Q Consensus 244 ~~~~~w~~~~ 253 (527)
.++..|.++-
T Consensus 234 ~~~~~W~~L~ 243 (356)
T PLN03088 234 AEPITWASLE 243 (356)
T ss_pred CCCCCccccc
Confidence 8888998753
No 104
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.52 E-value=0.011 Score=48.31 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=54.5
Q ss_pred ceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc-Ceeeee--eccCCcccceeEEEeeeeeEEEEEEccccccc
Q psy8246 173 DWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN-ERSLLL--HLEQPVKWPCQVKINLNVGKLQLQLNKEEAKL 248 (527)
Q Consensus 173 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (527)
||+|+.+.++|.+|.+. .+..+.+.+.++++.+.+... +..|.| +|-+.+... ...+.....++++.|.|.++..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~-~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPE-QSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecch-hcEEEEeCcEEEEEEEcCCCCC
Confidence 79999999999999876 445566677778877766543 223444 466776422 1233334578999999987778
Q ss_pred cccc
Q psy8246 249 WKHH 252 (527)
Q Consensus 249 w~~~ 252 (527)
|.++
T Consensus 80 W~~L 83 (84)
T cd06489 80 WSKL 83 (84)
T ss_pred CccC
Confidence 8764
No 105
>KOG1309|consensus
Probab=95.53 E-value=0.037 Score=51.02 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=57.3
Q ss_pred CccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc-C--eeeeeeccCCcccceeEEEeeeeeEEEEEEcccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN-E--RSLLLHLEQPVKWPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
+|+||+|+..+++|.+|.+. ..+.+.+.+.++.|.+.+-.. | |.+.+.|.++|. |-...+-..+.|+||.|.+.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~-pe~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEII-PEKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhccccc-ccceeeEeeeeeEEEEecccc
Confidence 68999999999999999988 345566666666665444442 2 333344666664 222344555679999999988
Q ss_pred cccccccC
Q psy8246 246 AKLWKHHS 253 (527)
Q Consensus 246 ~~~w~~~~ 253 (527)
...|.++-
T Consensus 83 ~irW~~Le 90 (196)
T KOG1309|consen 83 IIRWESLE 90 (196)
T ss_pred chhhhhhh
Confidence 89998754
No 106
>KOG1108|consensus
Probab=94.83 E-value=0.031 Score=53.26 Aligned_cols=53 Identities=30% Similarity=0.443 Sum_probs=42.6
Q ss_pred ccCHHHHhcccCCCC---eEEEEcCEEEecccCcccccccccccccccccccchhhh
Q psy8246 49 LVSKAQLAEHNKEDD---MWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFN 102 (527)
Q Consensus 49 ~~t~~e~~~h~~~~~---~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~ 102 (527)
.||.+||++.|..++ .++.|=|.||||+.=. .|=|--..-.++||+||+.+|-
T Consensus 61 lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk-~hYgsG~sYnhFaGRDASrAFv 116 (281)
T KOG1108|consen 61 LFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGK-KHYGSGCSYNHFAGRDASRAFV 116 (281)
T ss_pred eeCHHHHhhccCCCCCCceeeeeeceeeeccCCe-eeeCCCCCcccccccccchhee
Confidence 499999999997554 8899999999999864 4444334578999999999884
No 107
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=93.69 E-value=0.38 Score=41.12 Aligned_cols=81 Identities=14% Similarity=0.234 Sum_probs=52.6
Q ss_pred CccceEeecCcEEEEEEeccCCCceEEecCCCceEEEEEEc--Ceee--eeeccCCcc-cceeEEEeeeeeEEEEEEccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKSSCPKVLITLNENNTDLSLLIN--ERSL--LLHLEQPVK-WPCQVKINLNVGKLQLQLNKE 244 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~ 244 (527)
|.++|+|+...|+|.++.+.. ..+.+.+.++++.+.+... +..| .++|-+.|. +.+..+ ....++++.|.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~-~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~--v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA-KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYK--VTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC-CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEE--ecCCeEEEEEEEC
Confidence 358999999999999987753 3344566666666555432 2223 335666664 223333 3447899999998
Q ss_pred c-cccccccC
Q psy8246 245 E-AKLWKHHS 253 (527)
Q Consensus 245 ~-~~~w~~~~ 253 (527)
+ +..|.++-
T Consensus 78 ~~~~~W~~L~ 87 (108)
T cd06465 78 EAGEYWPRLT 87 (108)
T ss_pred CCCCCCcccc
Confidence 7 77888753
No 108
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=93.55 E-value=0.52 Score=38.89 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=52.9
Q ss_pred ccceEeecCcEEEEEEecc-CC---CceEEecCCCceEEEEEE-cCeeeee--e-ccCCcccceeEEEeeeeeEEEEEEc
Q psy8246 171 SMDWFQQLNFICFVFYLKS-SC---PKVLITLNENNTDLSLLI-NERSLLL--H-LEQPVKWPCQVKINLNVGKLQLQLN 242 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~~~~~~--~-l~~~~~~~~~~~~~~~~~~~~~~l~ 242 (527)
+|+|+|+...|+|.++.+. .. ..+.+.+.++++.+.+.. .+..|.+ . |.+.+.-. .........++++.|.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e-~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPE-KSSFKVKTDRIVITLA 81 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCcc-ccEEEEeCCEEEEEEE
Confidence 5899999999999998876 32 456667777777666543 2333333 2 55665321 1233344578999999
Q ss_pred cccccccccc
Q psy8246 243 KEEAKLWKHH 252 (527)
Q Consensus 243 ~~~~~~w~~~ 252 (527)
|.++..|.++
T Consensus 82 K~~~~~W~~L 91 (92)
T cd06468 82 KKKEKKWESL 91 (92)
T ss_pred eCCCCccCcc
Confidence 9877778653
No 109
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=93.53 E-value=0.76 Score=36.13 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=45.2
Q ss_pred CccceEeecCcEEEEEEecc-C--CCceEEecCCCceEEEEEEcC-eeee--eeccCCcccceeEEEeeeeeEEEEEEc
Q psy8246 170 YSMDWFQQLNFICFVFYLKS-S--CPKVLITLNENNTDLSLLINE-RSLL--LHLEQPVKWPCQVKINLNVGKLQLQLN 242 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~l~ 242 (527)
|+|+|.|+...+++.++.+. . +..+.+.+.++.+.+.+..++ ..+. ++|-+.+.... .......+++++.|.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~-s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDE-STWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCC-EEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchh-cEEEEECCEEEEEEE
Confidence 57999999999999999855 2 566777788788877766543 3333 34666664322 233333346666664
No 110
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=93.48 E-value=0.44 Score=37.88 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=52.6
Q ss_pred eEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc---CeeeeeeccCCcccceeEEEeeeeeEEEEEEccccc-cc
Q psy8246 174 WFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN---ERSLLLHLEQPVKWPCQVKINLNVGKLQLQLNKEEA-KL 248 (527)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 248 (527)
|+|+...++|.++.+. .+..+.+.+.++.+.+.+... .+...++|.+.+... .+......+++++.|.|.+. ..
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~-~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPE-ESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchh-hcEEEEeCCEEEEEEEECCCCCC
Confidence 8899999999999877 445555667767777666542 233344577777532 13444455889999999776 78
Q ss_pred cccc
Q psy8246 249 WKHH 252 (527)
Q Consensus 249 w~~~ 252 (527)
|.++
T Consensus 80 W~~l 83 (84)
T cd06463 80 WPRL 83 (84)
T ss_pred Cccc
Confidence 8753
No 111
>KOG1667|consensus
Probab=92.59 E-value=0.38 Score=46.76 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEcC--eeee--eeccCCcccceeEEEeeeeeEEEEEEccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLINE--RSLL--LHLEQPVKWPCQVKINLNVGKLQLQLNKE 244 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (527)
-|.||+|+.+.|+|.+|.+. -|+...+..+...|++.+..+. ..+. +.|-+.|- .....+..-..|+||.|.+.
T Consensus 215 cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvn-ve~s~v~m~~tkVEIsl~k~ 293 (320)
T KOG1667|consen 215 CRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVN-VEESSVVMGETKVEISLKKA 293 (320)
T ss_pred chhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeec-hhhceEEeecceEEEEEecc
Confidence 48999999999999999987 4555444444445666655522 2222 22333221 11122222335899999999
Q ss_pred ccccccccCcc
Q psy8246 245 EAKLWKHHSTK 255 (527)
Q Consensus 245 ~~~~w~~~~~~ 255 (527)
++..|.++--.
T Consensus 294 ep~sWa~Le~p 304 (320)
T KOG1667|consen 294 EPGSWARLEFP 304 (320)
T ss_pred CCCCcccccCC
Confidence 99999886533
No 112
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=91.11 E-value=1.2 Score=35.32 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred eEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEcCeeeeeeccCCcccceeEEEeeeeeEEEEEEccccccccccc
Q psy8246 174 WFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLINERSLLLHLEQPVKWPCQVKINLNVGKLQLQLNKEEAKLWKHH 252 (527)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~ 252 (527)
|+|+...+.|.++.+. .+..+.....+..+.+.. ..+...++|.+.+. +-.+.+....+++++.|.|.+...|.++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~-~e~~~~~~~~~~l~i~L~K~~~~~W~~L 77 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPID-DEKSSAKIGNGVLVFTLVKKEPGIWEAL 77 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC--CCEEEEEeCccccc-ccccEEEEeCCEEEEEEEeCCCCccccc
Confidence 8899999999888765 333333344444333322 33444445666663 2223444555889999999877778753
No 113
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=87.12 E-value=3.4 Score=33.24 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=45.7
Q ss_pred cceEeecCcEEEEEEecc--CCCceEEecCCCceEEEEEEcCeeeeeeccCCcccceeEEEeeee-eEEEEEEccccc-c
Q psy8246 172 MDWFQQLNFICFVFYLKS--SCPKVLITLNENNTDLSLLINERSLLLHLEQPVKWPCQVKINLNV-GKLQLQLNKEEA-K 247 (527)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~ 247 (527)
|+|.|+...+++.+.... .+..+...+.++++.+.+..........|.+.+.... ....... .++++.|.|.++ .
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~-s~w~~~~~~~v~i~L~K~~~~~ 79 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDE-STWTLEDGKLLEITLEKRNEGE 79 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcC-CEEEEeCCCEEEEEEEECCCCc
Confidence 589999999999876533 4555555666666654432111111113555553221 1222333 578899998776 6
Q ss_pred ccccc
Q psy8246 248 LWKHH 252 (527)
Q Consensus 248 ~w~~~ 252 (527)
.|.++
T Consensus 80 ~W~~L 84 (85)
T cd06467 80 WWPSL 84 (85)
T ss_pred ccccc
Confidence 78653
No 114
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=81.53 E-value=10 Score=30.77 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=42.6
Q ss_pred cceEeecCcEEEEEEecc--CCCceEEecCCCceEEEEEEcCeee-eeeccCCcccceeEEEeeeee-EEEEEEcccc-c
Q psy8246 172 MDWFQQLNFICFVFYLKS--SCPKVLITLNENNTDLSLLINERSL-LLHLEQPVKWPCQVKINLNVG-KLQLQLNKEE-A 246 (527)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~-~ 246 (527)
|+|+|+...+++.++... .+..+.+.+.++++.+.+. ++..+ ...|-+.+-... .....+.+ ++++.|.|.+ +
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~-~~~~~~~g~L~~~I~~d~-Stw~i~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK-DQAPLLEGKLYSSIDHES-STWIIKENKSLEVSLIKKDEG 78 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC-CCCeEEeCcccCcccccC-cEEEEeCCCEEEEEEEECCCC
Confidence 689999999999988743 3444555666566544321 11111 112444442111 12222223 4889998875 4
Q ss_pred ccccc
Q psy8246 247 KLWKH 251 (527)
Q Consensus 247 ~~w~~ 251 (527)
.-|..
T Consensus 79 ~~W~~ 83 (85)
T cd06493 79 PTWPE 83 (85)
T ss_pred ccccc
Confidence 47764
No 115
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=79.32 E-value=16 Score=30.49 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCccceEeecCcEEEEEEecc--CCCceEEecCCCceEEEEEEcCeeeee--eccCCcccceeEEEeeeeeE-EEEEEcc
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS--SCPKVLITLNENNTDLSLLINERSLLL--HLEQPVKWPCQVKINLNVGK-LQLQLNK 243 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~-~~~~l~~ 243 (527)
.+.|+|.|+...+++.+-... .+..+.+.+..+++.+.+ .+.. .+ .|-+.+.... ..-..+-++ +++.|.|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~--~g~~-~l~G~L~~~I~~de-stWtled~k~l~I~L~K 80 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV--KGQE-VLKGKLFDSVVADE-CTWTLEDRKLIRIVLTK 80 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE--CCEE-EEcCcccCccCccc-CEEEEECCcEEEEEEEe
Confidence 367999999999999885433 344455556656554432 3322 12 1334442111 122234467 5889988
Q ss_pred cccc---cccc
Q psy8246 244 EEAK---LWKH 251 (527)
Q Consensus 244 ~~~~---~w~~ 251 (527)
.+.. -|.+
T Consensus 81 ~~~~~~~~W~s 91 (93)
T cd06494 81 SNRDAGNCWKS 91 (93)
T ss_pred CCCCCCccccc
Confidence 6544 6764
No 116
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=73.23 E-value=2 Score=35.68 Aligned_cols=17 Identities=29% Similarity=0.874 Sum_probs=13.9
Q ss_pred eEEEEcCEEEecccCcc
Q psy8246 64 MWMCIRGVVYNVTRYMD 80 (527)
Q Consensus 64 ~wvii~g~VYDvt~f~~ 80 (527)
.+...+|+|||+|+|+.
T Consensus 57 yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 57 YYACMDGKVYDITEWAT 73 (94)
T ss_pred EEEEcCceEEehhhhhh
Confidence 45568999999999963
No 117
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=73.21 E-value=25 Score=30.03 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=47.4
Q ss_pred CccceEeecCcEEEEEEeccCCCceEEecCCCceEEEEEE-cCeeeee--eccCCcc-cceeEEEeeeeeEEEEEEcccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKSSCPKVLITLNENNTDLSLLI-NERSLLL--HLEQPVK-WPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
|.++|+|.+..|.|-++.+. +..+.+.+.++++.+.... .|..|.+ +|-++|. +.+ ......-++++.|.|.+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d-~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~S--k~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED-SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDS--KHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCC-CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccC--eEEeCCceEEEEEEeCC
Confidence 45899999998777666543 3344456666666555422 2333443 4556653 222 23334457888998865
Q ss_pred c-ccccccC
Q psy8246 246 A-KLWKHHS 253 (527)
Q Consensus 246 ~-~~w~~~~ 253 (527)
. ..|.++-
T Consensus 79 ~~~~WprL~ 87 (106)
T cd00237 79 EGVAWPRLT 87 (106)
T ss_pred CCCCCchhh
Confidence 3 3687654
No 118
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=63.24 E-value=24 Score=30.62 Aligned_cols=99 Identities=13% Similarity=0.021 Sum_probs=57.3
Q ss_pred ccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccch
Q psy8246 387 NKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMR 466 (527)
Q Consensus 387 ~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~r 466 (527)
+.++|+|--|++..+..+|+++-. ..+++++.-+.+.+|... |.. ...+++.-...... . .. ...
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~--~~~~~v~iev~~~~d~~~---l~~----~~~~~v~wv~r~~~-~--~~---~~~ 66 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPA--DAPGTVFIEVPDEADRQP---LPA----PAGVEVTWVPRDGP-A--AQ---GSA 66 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-T--T-EEEEEEEESSGGG--------------TEEEEEEEE-SS-----TT----HH
T ss_pred ceEEEEeccccHHHHHHHHHhCCC--CCeEEEEEEECChHhccc---CCC----CCCCEEEEEeCCCC-C--ch---HHH
Confidence 578999999999999999998842 368888888888877432 222 23444432211111 0 00 001
Q ss_pred hhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHH
Q psy8246 467 IRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 467 i~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
+ .+.+.++.. .....++++|-..+++++++.|++
T Consensus 67 l-----~~al~~~~~~~~~~~vW~AgE~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 L-----ADALRDLPLPAGDGYVWVAGEASAVRALRRHLRE 101 (119)
T ss_dssp H-----HHHHTTS---SS-EEEEEEEEHHHHHHHHHHHHH
T ss_pred H-----HHHHHHhhccCCCeEEEEEecHHHHHHHHHHHHH
Confidence 1 112222221 235667799999999999999984
No 119
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=59.55 E-value=36 Score=27.72 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=48.7
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|.+++.. ++.++++++.|......+..|..|.+ +|. ..|+... ..+.|+|.+-.. -.-.
T Consensus 7 ~g~I~~i~~~-~~~~~~~i~~~~~~~~~~~~g~SIav----nGv----cLTV~~~-------~~~~f~~~l~~e--Tl~~ 68 (85)
T PF00677_consen 7 TGKIISIEKN-GDSQRLRIEIPDKILSDLKIGGSIAV----NGV----CLTVTDI-------NEDWFEVDLIPE--TLRR 68 (85)
T ss_dssp EEEEEEEEEE-SSEEEEEEEESTGGGGTG-TTSEEEE----TTE----EEEEEEE-------ETTEEEEEEEHH--HHHC
T ss_pred EEEEEEEEEC-CCCEEEEEEcCHHHHhhCccCcEEEE----CCe----eeEEEEe-------cCCEEEEechHH--Hhhh
Confidence 3677777755 66889999998544445888987776 453 4566654 456777766532 1112
Q ss_pred HhhhcCCCCCEEEEe
Q psy8246 358 PLLCGLREGQELEVS 372 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~ 372 (527)
..|..+++||.|.+.
T Consensus 69 T~l~~~~~G~~VNlE 83 (85)
T PF00677_consen 69 TTLGNLKVGDRVNLE 83 (85)
T ss_dssp SSGGG--TTSEEEEE
T ss_pred chhccCCCCCEEEEe
Confidence 446779999999874
No 120
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=48.79 E-value=82 Score=23.61 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=24.6
Q ss_pred eEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEE
Q psy8246 174 WFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLI 209 (527)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 209 (527)
|+|+.+.+.+.++... .++.+.+...++.+.+....
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~ 37 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKR 37 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEE
Confidence 7888888888888776 44445556666666665544
No 121
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=44.02 E-value=26 Score=36.56 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=25.3
Q ss_pred ccEEEEEecCC--chhHHHHHHHHHHhCCCcEEEE
Q psy8246 387 NKLVLLAAGTG--LTPMIPVINWSIQSQRQSVQLV 419 (527)
Q Consensus 387 ~~ivlIAgGtG--ItP~l~ll~~l~~~~~~~v~L~ 419 (527)
+++++.||||| |.|.+++++.+.+.+ .+|.++
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g-~~v~~v 35 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDN-WDISYI 35 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCC-CEEEEE
Confidence 47999999999 899999999998754 344333
No 122
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=43.09 E-value=17 Score=41.61 Aligned_cols=25 Identities=8% Similarity=-0.169 Sum_probs=21.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHHhhh
Q psy8246 484 SLVYSQLNLPYAVAAVADKMTGMEN 508 (527)
Q Consensus 484 ~~~~yiCGPp~m~~~v~~~L~~l~~ 508 (527)
+..++||||++|.++|.+.++....
T Consensus 675 ~vgvlv~gp~~~~~~va~~~~~~~~ 699 (722)
T PLN02844 675 DIGVLVCGPETMKESVASMCRLKSQ 699 (722)
T ss_pred ceeEEEeCchHHHHHHHHHHHhccc
Confidence 4567799999999999999988744
No 123
>PLN02292 ferric-chelate reductase
Probab=38.91 E-value=23 Score=40.49 Aligned_cols=23 Identities=13% Similarity=-0.167 Sum_probs=19.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHHh
Q psy8246 484 SLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 484 ~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+..++||||++|.+.|.+.|++-
T Consensus 666 ~vgvlv~gp~~~~~~va~~c~s~ 688 (702)
T PLN02292 666 SVGVLVCGPKKMRQKVAKICSSG 688 (702)
T ss_pred ceeEEEECcHHHHHHHHHHHhcC
Confidence 45677999999999999998764
No 124
>KOG0720|consensus
Probab=34.01 E-value=21 Score=38.15 Aligned_cols=16 Identities=31% Similarity=0.928 Sum_probs=13.8
Q ss_pred eEEEEcCEEEecccCc
Q psy8246 64 MWMCIRGVVYNVTRYM 79 (527)
Q Consensus 64 ~wvii~g~VYDvt~f~ 79 (527)
.+++-||+|||+|+|.
T Consensus 379 yy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWA 394 (490)
T ss_pred eeeecCCceEeehhhh
Confidence 5567899999999995
No 125
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=33.89 E-value=2.9e+02 Score=28.79 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCe------eeeeeeeccCCCCCCCCCCCCEEEE
Q psy8246 273 VSKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDV------DISKPYTPVEPLQAAPLSYSNTLTF 346 (527)
Q Consensus 273 ~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~------~~~R~YT~~s~~~~~~~~~~~~l~l 346 (527)
.-...+++|++++.+.-.-+.+ ++.-+ .+.+|+=+.+--...|. ...-||....+-. . +.|-+.-
T Consensus 164 ~l~L~~a~Vt~V~~vG~GdRVC-VDtcs----ll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFR--V--NAGaVha 234 (344)
T PRK02290 164 KLELVPATVTRVEPVGMGDRVC-VDTCS----LMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFR--V--NAGAVHA 234 (344)
T ss_pred cceeEEEEEEEEEEcCCccEEE-EEccc----cCCCCceEEEcccCCcEEEEecccccCCCccCCCee--E--ecCccee
Confidence 3457889999999997654332 22111 14455544432222222 2222333222100 0 5566777
Q ss_pred EEEEeCCCCchHhhhcCCCCCEEEEeccccccccC-----CCCCCccEEEEEec
Q psy8246 347 LIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVG-----LIGKRNKLVLLAAG 395 (527)
Q Consensus 347 ~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~-----~~~~~~~ivlIAgG 395 (527)
.|+. .|.-|+||..|+.||+|.+....|+-.-. +. ..+++++|-+-
T Consensus 235 Yv~~--pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKI-E~RPL~lIeAe 285 (344)
T PRK02290 235 YVRV--PGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKI-EKRPLLLIEAE 285 (344)
T ss_pred EEEc--CCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEE-eeccEEEEEEE
Confidence 7776 36679999999999999999888874321 11 34678887663
No 126
>PLN02631 ferric-chelate reductase
Probab=33.05 E-value=44 Score=38.24 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=19.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHHh
Q psy8246 484 SLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 484 ~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+..++||||+.|...|.+.|+.-
T Consensus 663 ~vgvlv~gp~~~~~~va~~c~s~ 685 (699)
T PLN02631 663 DVGVMVCGPRKMRHEVAKICSSG 685 (699)
T ss_pred ceeEEEECcHHHHHHHHHHHhcC
Confidence 56677999999999999998764
No 127
>PLN02343 allene oxide cyclase
Probab=32.85 E-value=49 Score=31.32 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=28.1
Q ss_pred EEEEEEEEeCCCCchHhh--hcCCCCC--EEEEeccccccccCCCCCCccEEEEEecCCch
Q psy8246 343 TLTFLIKSYEDGLLSPLL--CGLREGQ--ELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLT 399 (527)
Q Consensus 343 ~l~l~IK~y~~G~~S~~L--~~l~~Gd--~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGIt 399 (527)
-|+++|+.++.-+.-+|= ...--|| .|.+.|||=.| .+..+.|.||+||-
T Consensus 111 G~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpylty-------eDt~LaiTGGsGiF 164 (229)
T PLN02343 111 GLCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY-------EDTYLAITGGSGIF 164 (229)
T ss_pred eeEEEEEeccccCCceeEEEEEEEecCcceeEEecccccc-------ccceEEeecCccee
Confidence 477888877532222211 1123344 34444555333 35789999999983
No 128
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.98 E-value=2e+02 Score=29.99 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=62.7
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEE------eCCeeeeeeeeccCCCCCCCCCCCCEEEEE
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFI------VNDVDISKPYTPVEPLQAAPLSYSNTLTFL 347 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~------~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~ 347 (527)
....+++|++++.+.-.-+.+ ++.-+ .+.+|+=+.+--. ...+....||...-+-.- +.|-+.-.
T Consensus 175 l~L~~a~Vt~V~~vGmGdRVC-VDtcs----ll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRV----NAGaVHaY 245 (354)
T PF01959_consen 175 LELVPATVTRVEPVGMGDRVC-VDTCS----LLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRV----NAGAVHAY 245 (354)
T ss_pred ceeEEEEEEEEEEcCCccEEE-EEccc----cCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceE----ecCcceeE
Confidence 457889999999986543322 22211 1344443332111 112233334444321100 55667777
Q ss_pred EEEeCCCCchHhhhcCCCCCEEEEecccccccc---C--CCCCCccEEEEEec
Q psy8246 348 IKSYEDGLLSPLLCGLREGQELEVSSPEGKFDV---G--LIGKRNKLVLLAAG 395 (527)
Q Consensus 348 IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~---~--~~~~~~~ivlIAgG 395 (527)
|.. .|.-|+||..|+.||+|.+....|.-.. . +. ..+++++|=+-
T Consensus 246 v~~--pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKI-E~RPLllIeA~ 295 (354)
T PF01959_consen 246 VLM--PGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKI-ERRPLLLIEAE 295 (354)
T ss_pred EEc--CCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEE-eecceEEEEEE
Confidence 775 3667999999999999999988887331 1 11 24677777543
No 129
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=30.88 E-value=34 Score=31.05 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=27.5
Q ss_pred EEEEEEEeCCCCchHhh--hcCCCCC--EEEEeccccccccCCCCCCccEEEEEecCCch
Q psy8246 344 LTFLIKSYEDGLLSPLL--CGLREGQ--ELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLT 399 (527)
Q Consensus 344 l~l~IK~y~~G~~S~~L--~~l~~Gd--~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGIt 399 (527)
+++.|+.++.-...+|= ..+--|| .|.+.||+=.+ .+..+.|.|||||=
T Consensus 61 ~Cvliq~~p~k~GdryEaiySfyfGdyGhISvqGpy~t~-------eDtyLAVTGGtGiF 113 (176)
T PF06351_consen 61 ICVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTY-------EDTYLAVTGGTGIF 113 (176)
T ss_dssp EEEEEEEECCCTEEEEEEEEEEE-GGGEEEEEEEEEETT-------S-EEEEEEEEEETT
T ss_pred EEEEEEeccccCCceEEEEEEEEecccceEEEecccccc-------cceeEEEeccCcee
Confidence 66777766533222221 1234455 45566766443 35789999999983
No 130
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=30.00 E-value=4.4e+02 Score=26.88 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccc
Q psy8246 340 YSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGK 377 (527)
Q Consensus 340 ~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~ 377 (527)
+.|.+.-.||+ | |.-|+||+.|+.||+|.|.--.|.
T Consensus 260 NAG~VhaYi~v-P-g~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 260 NAGAVHAYIRV-P-GGKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred cccceeEEEEc-C-CCceEEhhhhcCCCeEEEEecCCc
Confidence 56778889997 3 566899999999999998865554
No 131
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=29.61 E-value=1e+02 Score=28.23 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=44.0
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEecccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDV 380 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~ 380 (527)
+..|..|.|.. .+| ....|+++..... .+..+.|.+ .-++-+.|-..++||+|.+..|.|...+
T Consensus 86 V~~Gs~V~l~d-~~~--~~~~~~iVgp~e~--d~~~~~IS~------~SPlG~ALlGk~vGd~v~v~~p~g~~~~ 149 (157)
T PRK01885 86 VFFGAWVEIEN-EDG--EEKRFRIVGPDEI--DGRKGYISI------DSPMARALLKKEVGDEVTVNTPAGEAEW 149 (157)
T ss_pred EEeCCEEEEEE-CCC--CEEEEEEEChHHh--CcCCCeEec------cCHHHHHHhCCCCCCEEEEEcCCCcEEE
Confidence 56788888875 344 4557888875421 113444433 3667788999999999999999997543
No 132
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=29.46 E-value=40 Score=32.49 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=16.3
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
....|.|||+|++.. ..+.++|+|.+.
T Consensus 176 ~l~PR~YSIsSS~~~----~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLV----HPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTT----STTEEEEEEEE-
T ss_pred CCCCcceeecccccC----CCCEEEEEEEEE
Confidence 356899999998732 567888888875
No 133
>PHA02099 hypothetical protein
Probab=29.22 E-value=79 Score=24.62 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=33.6
Q ss_pred EEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecC
Q psy8246 343 TLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGT 396 (527)
Q Consensus 343 ~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGt 396 (527)
+|.++||....|...+|+.+|+.-++| ||-|. +.+-.....-.++|-|.|-
T Consensus 2 efkiiv~s~~~gpid~yi~~lkn~~rv---~pg~~emhilr~~~g~diifha~gy 53 (84)
T PHA02099 2 EFKIIVKSSAKGPVDQYIANLKNAGRV---GPGESEMHILRNFEGVDIVFHAEGY 53 (84)
T ss_pred ceEEEEecccCCCHHHHHHhhhccCcc---CCCCcEEEEEeecCCccEEEEcCCC
Confidence 378888988899999999998876654 55554 3322212345666666653
No 134
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=27.31 E-value=99 Score=24.44 Aligned_cols=64 Identities=31% Similarity=0.363 Sum_probs=40.3
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFD 379 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~ 379 (527)
+.+|..|.++....+ ..+.|+++..... .++.+ ++-..-++...|-..++||.+.+..|.|...
T Consensus 6 V~~Gs~V~l~~~~~~--~~~~~~lv~~~~~--~~~~~------~IS~~SPLG~ALlG~~~Gd~v~~~~~~g~~~ 69 (77)
T PF01272_consen 6 VTIGSTVTLKDLDDG--EEETYTLVGPDEA--DPDNG------KISIDSPLGKALLGKKVGDEVEVELPGGERK 69 (77)
T ss_dssp -STTEEEEEEETTTT--EEEEEEEE-GGG---BSTST------EEETTSHHHHHHTT-BTT-EEEEEETTBEEE
T ss_pred EEeCCEEEEEECCCC--CEEEEEEEeEhHh--CCcee------EEEecCHHHHHhcCCCCCCEEEEEeCCceEE
Confidence 678998888764344 4567888765411 11334 2334566778888999999999999988643
No 135
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=26.89 E-value=4.3e+02 Score=28.09 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=25.2
Q ss_pred EEEEEEEEEe-cC--CEEEEEEEeCCCcCcccCCccEEEEEEEe
Q psy8246 278 TMRLLHQEQV-TH--NVVLITLEYTSPMFFYVPVGHHVFIKFIV 318 (527)
Q Consensus 278 ~~~v~~~~~v-s~--d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~ 318 (527)
.++|..+... ++ .++.+++.++.+. ..++||+|+.+++..
T Consensus 279 ~g~v~~i~p~vd~~trt~~vrv~l~N~~-~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 279 TIRKWTLLPSVDAATRTLQLRLEVDNAD-EALKPGMNAWLQLNT 321 (409)
T ss_pred EEEEEEEccccCCCCcEEEEEEEEeCCC-CccCCCCEEEEEEec
Confidence 4566655443 22 4556666665542 248999999998864
No 136
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=25.89 E-value=4.2e+02 Score=25.68 Aligned_cols=41 Identities=7% Similarity=-0.009 Sum_probs=25.7
Q ss_pred EEEEEEEEEEecC---CEEEEEEEeCCCcCcccCCccEEEEEEEe
Q psy8246 277 NTMRLLHQEQVTH---NVVLITLEYTSPMFFYVPVGHHVFIKFIV 318 (527)
Q Consensus 277 ~~~~v~~~~~vs~---d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~ 318 (527)
..++|..+..... .++.+++.++.+. ..+.+|+++.+.+..
T Consensus 155 ~~g~v~~I~~~~~~~~~~~~v~~~~~~~~-~~l~~G~~v~v~i~~ 198 (265)
T TIGR00999 155 LPARVDYVGPEVDGSSRTAKVRVLIKNEN-LTLKPGLFVQVRVET 198 (265)
T ss_pred EEEEEEEEccccCCCCceEEEEEEEeCCC-CccCCCCEEEEEEec
Confidence 4567766664332 3455666665432 237899999998865
No 137
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=25.07 E-value=1.3e+02 Score=27.37 Aligned_cols=64 Identities=27% Similarity=0.388 Sum_probs=43.2
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFD 379 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~ 379 (527)
+..|..|.+.....| ..+.|+++.....+ +..+.|. -.-++.+.|-..++||.+.+.+|-|...
T Consensus 79 V~~Gs~V~~~~~~~g--e~~~~~iVg~~ead--~~~~~IS------~~SPig~aLlGk~vGd~v~v~~p~g~~~ 142 (151)
T COG0782 79 VTFGSTVTLENLDDG--EEVTYTIVGPDEAD--PAKGKIS------VDSPLGRALLGKKVGDTVEVNTPGGEKE 142 (151)
T ss_pred EecCCEEEEEECCCC--CEEEEEEEcccccc--cccCcee------ccCHHHHHHhCCCCCCEEEEecCCceEE
Confidence 567998888765444 56799999865210 1222221 2356778899999999999999955543
No 138
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=24.96 E-value=1.8e+02 Score=27.83 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=27.8
Q ss_pred ceEEEEEEEEEEecC-----CEEEEEEEeCCCcCcccCCccEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTH-----NVVLITLEYTSPMFFYVPVGHHVFIKFIV 318 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~-----d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~ 318 (527)
.-..++|++.+.++. +++.+.|++++. .+.|+||.|+.|....
T Consensus 7 ~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~-~l~Y~pGD~l~V~P~N 54 (219)
T PF00667_consen 7 NPFPATVLENRRLTSPGSDRSTRHIELDLSDS-GLSYQPGDHLGVYPPN 54 (219)
T ss_dssp B-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS-TG---TT-EEEEE-SS
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC-CCcccCCCEEEEEccC
Confidence 346799999999986 588899988654 4569999999998653
No 139
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=24.56 E-value=1.2e+02 Score=27.73 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=42.2
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFD 379 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~ 379 (527)
+..|..|.++....| ....|+++... +.+.-.. ++-..-++.+.|-..++||.|.+..|.|...
T Consensus 86 V~~Gs~V~l~~~~~~--~~~~~~lvg~~------e~d~~~~--~IS~~SPlG~aLlGk~~Gd~v~~~~p~g~~~ 149 (157)
T PRK00226 86 VKFGSTVTLKDLDTD--EEETYQIVGSD------EADPKQG--KISIESPIARALIGKKVGDTVEVTTPGGEYE 149 (157)
T ss_pred EecCCEEEEEECCCC--CEEEEEEEChh------hcCccCC--eeccCChHHHHHhCCCCCCEEEEEcCCCcEE
Confidence 667888888754333 35578888653 1221111 2223466778888999999999999998643
No 140
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=23.89 E-value=2.6e+02 Score=26.93 Aligned_cols=83 Identities=10% Similarity=0.092 Sum_probs=53.1
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|.+++.. ++...++|+.|....-.+.++..|.+. |. +.|+... +.+.|++.+- |.-.-.
T Consensus 106 ~~~i~~i~~~-~~~~~~~i~~~~~~~~~i~~kgSIaid----Gv----sLTV~~v-------~~~~f~v~lI--p~Tl~~ 167 (206)
T PRK13020 106 TATVVEISDT-EENYDIRFRVPPEWMKYIFAKGFIGVN----GC----SLTVGEV-------DESEFEVHLI--PETLRA 167 (206)
T ss_pred EEEEEEEEEc-CCCEEEEEEEChHHhcccccCCEEEEe----eE----EEEEEeE-------cCCEEEEEEe--HHHHhh
Confidence 4788888865 567788999886533336677777663 43 5566664 3456777655 322223
Q ss_pred HhhhcCCCCCEEEEe-cccccc
Q psy8246 358 PLLCGLREGQELEVS-SPEGKF 378 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~-GP~G~f 378 (527)
.-|..+++||.|.+. -..|++
T Consensus 168 T~l~~~k~G~~VNiE~D~~~k~ 189 (206)
T PRK13020 168 TNLGAKKVGDLVNIEIDSQTQV 189 (206)
T ss_pred cccccCCCCCEEEEeEeccchH
Confidence 346779999999887 345543
No 141
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.84 E-value=4.9e+02 Score=25.92 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=27.7
Q ss_pred EEEEEEEEEEecC---CEEEEEEEeCCCcCcccCCccEEEEEEEe
Q psy8246 277 NTMRLLHQEQVTH---NVVLITLEYTSPMFFYVPVGHHVFIKFIV 318 (527)
Q Consensus 277 ~~~~v~~~~~vs~---d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~ 318 (527)
..++|..+..... ..+.+++.++.. ...+.+|+++.+.+..
T Consensus 203 ~~g~I~~I~~~~~~~~~~~~v~~~~~~~-~~~l~~G~~v~v~i~~ 246 (322)
T TIGR01730 203 FKGKLRFIDPRVDSGTGTVRVRATFPNP-DGRLLPGMFGRVTISL 246 (322)
T ss_pred EeEEEEEEeccccCCCCeEEEEEEEcCC-CCcCCCCCEEEEEEec
Confidence 3466766655443 466777777654 3348999999998865
No 142
>KOG2596|consensus
Probab=22.47 E-value=2.7e+02 Score=29.53 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=43.7
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhc-CCCCCEEEEecc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCG-LREGQELEVSSP 374 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~-l~~Gd~v~i~GP 374 (527)
|.||.=+.+-....+....|-- |.|... ..+++++.|..|.+|.+..|+++ |.++-+|.++-+
T Consensus 82 y~pgnGf~iigaHtDSpcLrlK-P~Sk~s-----~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~ 145 (479)
T KOG2596|consen 82 YVPGNGFSIIGAHTDSPCLRLK-PVSKRS-----AEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEA 145 (479)
T ss_pred ccCCCceeEEEecCCCcceeec-cccccc-----ccceEEEEEeecCCccchhhccccccccceEEEEec
Confidence 7788766664443333222221 122221 68999999999999999999988 999999988854
No 143
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=21.35 E-value=4.3e+02 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=32.0
Q ss_pred ecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEE
Q psy8246 287 VTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIK 349 (527)
Q Consensus 287 vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK 349 (527)
+.+..+++|++.-.+ -++||||.++-.. .....+||+... ..+.|.+.|.
T Consensus 14 l~~~~~~~R~AK~TP----~K~G~FVt~Wkr~-~~g~~~Pf~~~d--------~~d~liI~v~ 63 (123)
T PF08877_consen 14 LNGKTIRFRLAKKTP----KKPGQFVTFWKRD-ENGKNQPFDEED--------SFDFLIINVI 63 (123)
T ss_pred ECCcEEEEEecccCC----CcccEEEEEEEEC-CCCCccCCcccc--------CCCEEEEEEE
Confidence 556667777765433 4699999998764 234567888655 3455666555
Done!