Query psy8246
Match_columns 527
No_of_seqs 398 out of 2972
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:27:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 5.1E-35 1.7E-39 286.8 23.1 222 272-506 7-233 (243)
2 1tvc_A Methane monooxygenase c 100.0 3.1E-34 1.1E-38 282.6 22.1 233 272-518 6-247 (250)
3 2r6h_A NADH:ubiquinone oxidore 100.0 6.8E-34 2.3E-38 286.1 23.4 224 275-506 8-277 (290)
4 4eh1_A Flavohemoprotein; struc 100.0 6.8E-34 2.3E-38 278.7 22.7 225 275-518 2-238 (243)
5 1fdr_A Flavodoxin reductase; f 100.0 1E-33 3.4E-38 278.4 23.2 219 275-506 3-229 (248)
6 1umk_A B5R, NADH-cytochrome B5 100.0 1.1E-33 3.8E-38 282.5 23.1 223 272-506 12-265 (275)
7 4fk8_A Ferredoxin--NADP reduct 100.0 8.1E-34 2.8E-38 283.0 20.3 219 274-506 17-250 (271)
8 2qdx_A Ferredoxin reductase; o 100.0 3.1E-33 1.1E-37 276.6 21.3 218 275-506 2-234 (257)
9 4g1v_A Flavohemoglobin; three 100.0 7.2E-33 2.5E-37 291.4 24.1 222 275-518 148-393 (399)
10 1gvh_A Flavohemoprotein; oxido 100.0 7E-33 2.4E-37 291.1 23.2 232 275-517 151-392 (396)
11 2cnd_A NADH-dependent nitrate 100.0 8.5E-33 2.9E-37 275.2 22.5 225 273-506 9-259 (270)
12 1qfj_A Protein (flavin reducta 100.0 5.4E-33 1.8E-37 270.5 20.5 219 277-513 3-227 (232)
13 1cqx_A Flavohemoprotein; globi 100.0 1.6E-32 5.4E-37 289.1 25.4 231 275-517 153-398 (403)
14 3vo2_A Putative uncharacterize 100.0 8.2E-33 2.8E-37 281.4 22.4 228 274-507 31-285 (310)
15 2bgi_A Ferredoxin-NADP(H) redu 100.0 1.4E-32 4.8E-37 274.4 23.3 217 276-506 16-248 (272)
16 1krh_A Benzoate 1,2-dioxygenas 100.0 1.6E-32 5.3E-37 282.5 21.4 214 275-506 107-323 (338)
17 3lo8_A Ferredoxin--NADP reduct 100.0 4.6E-32 1.6E-36 275.8 22.5 228 273-507 25-286 (311)
18 2pia_A Phthalate dioxygenase r 100.0 1E-31 3.5E-36 274.6 23.1 221 272-518 4-228 (321)
19 1fnb_A Ferredoxin-NADP+ reduct 100.0 2E-31 6.9E-36 271.5 22.9 228 274-507 35-289 (314)
20 1ep3_B Dihydroorotate dehydrog 100.0 1.1E-31 3.6E-36 266.6 19.5 206 277-506 6-212 (262)
21 3jqq_A Ferredoxin NADP reducta 100.0 9.2E-32 3.1E-36 274.4 18.7 220 276-507 15-301 (316)
22 2b5o_A FNR, ferredoxin--NADP r 100.0 6.4E-31 2.2E-35 276.7 23.2 227 275-506 121-376 (402)
23 2bmw_A Ferredoxin--NADP reduct 100.0 6.7E-31 2.3E-35 266.3 22.5 227 275-506 20-278 (304)
24 2rc5_A Ferredoxin-NADP reducta 100.0 1.7E-30 6E-35 264.5 21.2 226 275-506 20-289 (314)
25 2gpj_A Siderophore-interacting 99.9 3.9E-27 1.3E-31 232.6 16.6 204 274-506 6-214 (252)
26 1ddg_A Sulfite reductase (NADP 99.9 2.9E-26 9.8E-31 238.7 12.4 185 305-506 145-344 (374)
27 3lf5_A Cytochrome B5 reductase 99.9 1E-24 3.6E-29 178.9 4.2 80 46-125 3-83 (88)
28 1f20_A Nitric-oxide synthase; 99.9 6.1E-23 2.1E-27 217.7 16.9 177 322-506 208-403 (435)
29 3ner_A Cytochrome B5 type B; h 99.9 5.4E-24 1.8E-28 176.2 6.7 81 47-127 8-89 (92)
30 4dql_A Bifunctional P-450/NADP 99.9 2.2E-22 7.5E-27 210.5 17.1 184 306-506 157-361 (393)
31 1cyo_A Cytochrome B5; electron 99.9 1.1E-23 3.9E-28 174.8 5.7 78 50-127 7-84 (93)
32 1hko_A Cytochrome B5; electron 99.9 2.3E-23 7.9E-28 176.1 6.6 78 50-127 11-88 (104)
33 2ibj_A Cytochrome B5, CYTB5; F 99.9 2.5E-23 8.6E-28 171.3 5.7 77 50-126 9-85 (88)
34 2qtl_A MSR;, methionine syntha 99.9 2.4E-22 8.2E-27 217.8 14.5 179 322-506 289-508 (539)
35 1tll_A Nitric-oxide synthase, 99.9 9.7E-22 3.3E-26 219.3 17.5 176 323-506 430-624 (688)
36 1x3x_A Cytochrome B5; hemoprot 99.9 5.9E-23 2E-27 166.7 5.1 73 50-123 6-82 (82)
37 3qfs_A CPR, P450R, NADPH--cyto 99.9 1.6E-21 5.3E-26 207.2 17.0 174 320-506 230-427 (458)
38 1cxy_A Cytochrome B5; helix, b 99.9 1.5E-22 5E-27 167.3 6.9 75 50-124 10-88 (90)
39 1mj4_A Sulfite oxidase; cytoch 99.9 2.2E-22 7.7E-27 163.2 4.4 72 50-122 7-82 (82)
40 3qe2_A CPR, P450R, NADPH--cyto 99.8 3.7E-21 1.3E-25 212.2 15.1 173 321-506 391-587 (618)
41 2bpo_A CPR, P450R, NADPH-cytoc 99.8 3E-22 1E-26 223.3 4.2 186 306-506 414-652 (682)
42 2keo_A Probable E3 ubiquitin-p 99.8 1.5E-22 5.1E-27 172.8 -0.1 79 48-126 23-102 (112)
43 3lrx_A Putative hydrogenase; a 99.8 4.7E-20 1.6E-24 168.9 9.6 133 363-506 1-135 (158)
44 3lyu_A Putative hydrogenase; t 99.8 9.4E-19 3.2E-23 157.4 8.7 131 369-511 3-135 (142)
45 3a1f_A Cytochrome B-245 heavy 99.8 1.3E-18 4.3E-23 162.4 9.0 137 369-507 1-170 (186)
46 1kbi_A Cytochrome B2, L-LCR; f 99.7 1.7E-17 5.7E-22 178.5 6.8 78 50-127 11-89 (511)
47 1sox_A Sulfite oxidase; oxidor 99.7 3.4E-17 1.2E-21 173.5 7.3 77 50-127 7-87 (466)
48 1j03_A Putative steroid bindin 99.5 1.1E-14 3.9E-19 122.2 4.9 56 50-107 5-64 (102)
49 1wh0_A Ubiquitin carboxyl-term 96.9 0.0049 1.7E-07 53.9 9.6 84 170-255 20-121 (134)
50 2xcm_C SGT1-like protein, cyto 96.8 0.0051 1.8E-07 49.7 8.3 83 170-253 3-89 (92)
51 1rl1_A Suppressor of G2 allele 96.3 0.014 4.7E-07 49.3 8.4 83 170-253 10-96 (114)
52 1x5m_A Calcyclin-binding prote 95.9 0.062 2.1E-06 46.3 10.5 84 169-254 20-113 (127)
53 2kmw_A Uncharacterized protein 93.6 0.17 5.7E-06 45.0 7.3 82 169-253 4-89 (150)
54 2o30_A Nuclear movement protei 91.1 0.69 2.4E-05 39.8 8.0 82 169-253 4-88 (131)
55 1ejf_A Progesterone receptor P 90.3 0.93 3.2E-05 38.7 8.0 80 171-253 5-90 (125)
56 1wgv_A KIAA1068 protein; CS do 87.6 2.9 9.9E-05 35.4 9.2 84 169-253 19-109 (124)
57 2cg9_X CO-chaperone protein SB 82.9 0.96 3.3E-05 39.1 3.9 82 169-253 6-107 (134)
58 2rh0_A NUDC domain-containing 79.4 6.2 0.00021 34.9 8.0 81 169-252 13-100 (157)
59 3qor_A Nuclear migration prote 77.0 8.4 0.00029 32.4 7.9 82 169-253 16-105 (121)
60 1wfi_A Nuclear distribution ge 75.9 5.4 0.00018 34.0 6.4 82 169-253 7-96 (131)
61 3s2u_A UDP-N-acetylglucosamine 60.6 5.5 0.00019 40.0 3.7 34 387-421 3-38 (365)
62 3ddy_A Lumazine protein, LUMP; 31.1 2E+02 0.007 25.8 8.7 77 278-372 105-181 (186)
63 2brj_A Arabidopsis thaliana ge 29.2 19 0.00067 32.0 1.4 49 343-398 69-121 (188)
64 2f23_A Anti-cleavage anti-GREA 24.8 21 0.00072 31.3 0.9 66 306-379 83-148 (156)
65 2pn0_A Prokaryotic transcripti 24.8 57 0.0019 28.0 3.7 61 306-376 57-117 (141)
66 2p4v_A Transcription elongatio 22.2 37 0.0013 29.8 2.0 63 306-379 85-147 (158)
67 3bmb_A Regulator of nucleoside 20.8 1.1E+02 0.0039 25.8 4.8 63 306-378 54-117 (136)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=5.1e-35 Score=286.83 Aligned_cols=222 Identities=24% Similarity=0.384 Sum_probs=181.4
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
.+..|+.++|++++.++++++.|+|+.+... ...++|||||.|+++.+|....|+|||++.+. +.+.++|+||+
T Consensus 7 ~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-----~~~~~~l~vk~ 81 (243)
T 2eix_A 7 NPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDD-----EKGYFDLIIKV 81 (243)
T ss_dssp CSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTT-----CCSEEEEEEEC
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCC-----CCCEEEEEEEE
Confidence 3456889999999999999999999988643 34599999999999888888899999999763 57899999999
Q ss_pred eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchh
Q psy8246 351 YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDI 428 (527)
Q Consensus 351 y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di 428 (527)
+++|.+|+||+++++||+|.|.||+|.|.+.. +..++++|||||||||||++|++++.... ..+++|+|++|+.+|+
T Consensus 82 ~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~-~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~~~ 160 (243)
T 2eix_A 82 YEKGQMSQYIDHLNPGDFLQVRGPKGQFDYKP-NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDI 160 (243)
T ss_dssp CTTCHHHHHHHTCCTTCEEEEEEEECSCCCCT-TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGC
T ss_pred cCCCCcchHhhcCCCCCEEEEECCeEEEEeCC-CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHh
Confidence 98999999999999999999999999998765 35689999999999999999999998752 5799999999999999
Q ss_pred hhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC--CCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 429 IWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS--NSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 429 ~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~--~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++++||+++++++++++++...+++..+..+ ..+++.. ..+.+.+.. ....+|+|||++|++++++.|+++
T Consensus 161 ~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g---~~g~v~~----~~l~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 161 LLRTELDDMAKKYSNFKVYYVLNNPPAGWTG---GVGFVSA----DMIKQHFSPPSSDIKVMMCGPPMMNKAMQGHLETL 233 (243)
T ss_dssp TTHHHHHHHHHHCTTEEEEEEEEECCTTCCS---EESSCCH----HHHHHHSCCTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeEEEEEeCCCCccccC---cCCccCH----HHHHHhcCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 9999999998877788887655432211111 1233322 123333322 345688999999999999999875
No 2
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=3.1e-34 Score=282.64 Aligned_cols=233 Identities=18% Similarity=0.169 Sum_probs=185.6
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEe-C-CCc--CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEY-T-SPM--FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFL 347 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~-p-~~~--~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~ 347 (527)
....++.++|++++.+++++++|+|+. + ... ...|+|||||.|+++ +....|+|||++.+. +.+.++|+
T Consensus 6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~-----~~~~l~i~ 78 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIP--GTDVSRSYSPANLPN-----PEGRLEFL 78 (250)
T ss_dssp CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTT--SCSSSEEECCBCCSS-----SSCCEEEE
T ss_pred CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeC--CCccccccccCCCCC-----CCCeEEEE
Confidence 344578899999999999999999998 7 542 446999999999874 445789999999763 47889999
Q ss_pred EEEeCCCCchHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCC
Q psy8246 348 IKSYEDGLLSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTE 425 (527)
Q Consensus 348 IK~y~~G~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~ 425 (527)
||++++|.+|+||+ ++++||.|.|.||+|.|.+.. ...++++|||||||||||++|++++...+ ..+++|+|++|+.
T Consensus 79 vk~~~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r~~ 157 (250)
T 1tvc_A 79 IRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKE-RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTE 157 (250)
T ss_dssp ECCCTTSSSHHHHHHHSSSSSEEEEEEEECCCSCCC-CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSS
T ss_pred EEECCCCCchHHHHhcCCCCCEEEEEcCccccccCc-cCCceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeCCH
Confidence 99999999999996 799999999999999998765 34589999999999999999999999875 5799999999999
Q ss_pred chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHH
Q psy8246 426 QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 426 ~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
+|++|+++|++++++.++|+++...+++..+..+ ..+++.+.+.+ .+.+. .....+|+|||++|++++++.|++
T Consensus 158 ~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g---~~g~v~~~l~~-~~~~~--~~~~~vyvCGp~~m~~~v~~~l~~ 231 (250)
T 1tvc_A 158 PELFYIDELKSLERSMRNLTVKACVWHPSGDWEG---EQGSPIDALRE-DLESS--DANPDIYLCGPPGMIDAACELVRS 231 (250)
T ss_dssp TTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSS---SSSSSSHHHHH-HHHHS--SSSSEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCC---ccceehHHHHh-hhhcc--cCCcEEEEeCCHHHHHHHHHHHHH
Confidence 9999999999998777789988766654221111 23344333321 22221 134678899999999999999988
Q ss_pred h---hhhcCCCCCCCC
Q psy8246 506 M---ENKMNPEIPPNN 518 (527)
Q Consensus 506 l---~~~m~~~~~~~~ 518 (527)
+ ..++..|.+.++
T Consensus 232 ~G~~~~~i~~e~F~~~ 247 (250)
T 1tvc_A 232 RGIPGEQVFFEKFLPS 247 (250)
T ss_dssp HCCCCSEEEECCCSSS
T ss_pred cCCCHHHEEEEeccCc
Confidence 6 456777777543
No 3
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=6.8e-34 Score=286.09 Aligned_cols=224 Identities=15% Similarity=0.205 Sum_probs=177.4
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEe-----------------------------CCeeeee
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIV-----------------------------NDVDISK 325 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-----------------------------~g~~~~R 325 (527)
.++.++|++++.+++++++|+|+.++...+.++|||||.|+++. .+....|
T Consensus 8 ~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R 87 (290)
T 2r6h_A 8 KEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVR 87 (290)
T ss_dssp CEEEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEE
T ss_pred eEEEEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcce
Confidence 45679999999999999999999987555569999999999863 2346789
Q ss_pred eeeccCCCCCCCCCCCCEEEEEEEE---------------eCCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEE
Q psy8246 326 PYTPVEPLQAAPLSYSNTLTFLIKS---------------YEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLV 390 (527)
Q Consensus 326 ~YT~~s~~~~~~~~~~~~l~l~IK~---------------y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~iv 390 (527)
+|||++.+. +.+.++|+||+ ++.|.+|+||+++++||+|.|.||+|.|.+.. ..++++
T Consensus 88 ~ySi~s~~~-----~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~--~~~~~v 160 (290)
T 2r6h_A 88 AYSMANYPA-----EGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQD--TDAEML 160 (290)
T ss_dssp EEECCSCTT-----CCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCCS--SSCEEE
T ss_pred eeeccCCCC-----CCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCCC--CCCeEE
Confidence 999999863 56899999997 45789999999999999999999999998753 578999
Q ss_pred EEEecCCchhHHHHHHHHHHhC--CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhh
Q psy8246 391 LLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIR 468 (527)
Q Consensus 391 lIAgGtGItP~l~ll~~l~~~~--~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~ 468 (527)
|||||||||||++|+++++... ..+++|+|++|+.+|++|++||+++++++++++++...+++... .+.....+++.
T Consensus 161 liagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~-~~~~g~~g~v~ 239 (290)
T 2r6h_A 161 YIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPE-DNWTGYVGFIH 239 (290)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGG-GCCCSCBSCHH
T ss_pred EEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcc-cCCCCeeEecC
Confidence 9999999999999999988763 57999999999999999999999998777788887766654211 01111234444
Q ss_pred hhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 469 TTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 469 ~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
..+....+.+........+|+|||++|++++++.|+++
T Consensus 240 ~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 240 QVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENL 277 (290)
T ss_dssp HHHHHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHc
Confidence 33322222221112245788999999999999999876
No 4
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=6.8e-34 Score=278.65 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=181.1
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCee--eeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDVD--ISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~~--~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
.|++++|++++.+++++++|+|+.++... ..|+|||||.|+++..+.. ..|+|||++.+ +.+.++|.||.+
T Consensus 2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~------~~~~~~i~vk~~ 75 (243)
T 4eh1_A 2 DGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHAS------NGREYRISVKRE 75 (243)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCC------CSSCEEEEEECT
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCC------CCCeEEEEEEEe
Confidence 47899999999999999999999987543 4599999999999876653 57999999976 567899999998
Q ss_pred -----CCCCchHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCC
Q psy8246 352 -----EDGLLSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTE 425 (527)
Q Consensus 352 -----~~G~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~ 425 (527)
++|.+|+||+ ++++||.|.|.||+|.|.+. ...++++|||||||||||++|++++......+++|+|++|+.
T Consensus 76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~--~~~~~~vliagGtGitp~~~~l~~l~~~~~~~v~l~~~~r~~ 153 (243)
T 4eh1_A 76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV--ERERPVVLISAGVGATPMQAILHTLAKQNKSGVTYLYACNSA 153 (243)
T ss_dssp TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC--CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEEESSG
T ss_pred ecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC--CCCCCEEEEEccccHHHHHHHHHHHHHcCCCeEEEEEEeCCh
Confidence 7799999997 59999999999999999876 367899999999999999999999998762239999999999
Q ss_pred chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHH
Q psy8246 426 QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTG 505 (527)
Q Consensus 426 ~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~ 505 (527)
+|+++.++|++++++. +++++...++..... . ..+++..... . +......+|+|||++|++++++.|++
T Consensus 154 ~~~~~~~el~~l~~~~-~~~~~~~~s~~~~~~--~--~~g~~~~~~~-----~-~~~~~~~vyvCGp~~m~~~v~~~l~~ 222 (243)
T 4eh1_A 154 KEHTFAQETAQLIAQQ-GWMQQVWYRDESADD--V--LQGEMQLAEL-----I-LPIEDGDFYLCGPIGFMQYVVKQLLA 222 (243)
T ss_dssp GGCTTHHHHHHHHHHH-TCEEEEEESSCCCTT--C--EESSCCCTTS-----C-CCTTTCEEEEEECHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhC-CeEEEEEEccCCCcc--c--ccCCccHHHe-----e-ccCCCcEEEEECCHHHHHHHHHHHHH
Confidence 9999999999998776 788766554432110 0 2233332221 1 12245678899999999999999998
Q ss_pred h---hhhcCCCCCCCC
Q psy8246 506 M---ENKMNPEIPPNN 518 (527)
Q Consensus 506 l---~~~m~~~~~~~~ 518 (527)
+ ..++..|.+.+.
T Consensus 223 ~g~~~~~i~~E~F~~~ 238 (243)
T 4eh1_A 223 LGVDKARIHYEVFGPH 238 (243)
T ss_dssp HTCCGGGEEEEECCC-
T ss_pred cCCCHHHEEEeccCCc
Confidence 7 566777777554
No 5
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=1e-33 Score=278.45 Aligned_cols=219 Identities=19% Similarity=0.264 Sum_probs=174.9
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.|+.++|++++.++++++.|+|+ +.. +.|+|||||.|+++.+|....|+|||++.+ ..+.++|+||.+++|
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~~--~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~------~~~~l~~~v~~~~~G 73 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-APV--LPFTAGQFTKLGLEIDGERVQRAYSYVNSP------DNPDLEFYLVTVPDG 73 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CCC--CCCCTTCEEEEEECC---CEEEEEECCSCT------TCSSEEEEEECCTTC
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CCC--CCcCCCCcEEEEccCCCCeeeeeecccCCC------CCCcEEEEEEEeCCC
Confidence 47889999999999999999997 432 459999999999986677789999999976 457899999999899
Q ss_pred CchHhhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|+||+++++||+|.|. ||+|.|.+......++++|||||||||||++|++++...+ ..+++|+|++|+.+|+++.+
T Consensus 74 ~~s~~l~~l~~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~ 153 (248)
T 1fdr_A 74 KLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLP 153 (248)
T ss_dssp SSHHHHHTCCTTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGGCTTHH
T ss_pred chhhHHHhCCCcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHhhHHH
Confidence 999999999999999999 9999998765223689999999999999999999987544 57899999999999999999
Q ss_pred HHHHHHhcC-CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhh----hcCCCcEEEEcCchHHHHHHHHHH-HHh
Q psy8246 433 QLDTFASKN-SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL----LNSNSLVYSQLNLPYAVAAVADKM-TGM 506 (527)
Q Consensus 433 eL~~l~~~~-~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l----~~~~~~~~yiCGPp~m~~~v~~~L-~~l 506 (527)
+|+++++++ ++|+++...+++... ....+++...+.+..+.+. .+.....+|+|||++|++++++.| +++
T Consensus 154 el~~l~~~~~~~~~~~~~~s~~~~~----~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 154 LMQELEKRYEGKLRIQTVVSRETAA----GSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETR 229 (248)
T ss_dssp HHHHHHHHTTTSEEEEEEESSSCCT----TEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcEEEEEEEecCCCC----CCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 999998764 588887665554311 0123455444433223322 223456788999999999999999 775
No 6
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=1.1e-33 Score=282.49 Aligned_cols=223 Identities=22% Similarity=0.348 Sum_probs=178.9
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
.+..|+.++|++++.++++++.|+|+.+... ...|.|||||.|+++.+|....|+|||++.+. +.+.++|+||+
T Consensus 12 ~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-----~~~~~~l~vk~ 86 (275)
T 1umk_A 12 SPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDD-----DKGFVDLVIKV 86 (275)
T ss_dssp CTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTT-----CCSEEEEEEEC
T ss_pred CCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccC-----CCCeEEEEEEE
Confidence 4466899999999999999999999987643 34599999999999888888999999999763 57899999999
Q ss_pred e---------CCCCchHhhhcCCCCCEEEEeccccccccCC--------C-------CCCccEEEEEecCCchhHHHHHH
Q psy8246 351 Y---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGL--------I-------GKRNKLVLLAAGTGLTPMIPVIN 406 (527)
Q Consensus 351 y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~--------~-------~~~~~ivlIAgGtGItP~l~ll~ 406 (527)
+ ++|.+|+||+++++||+|.|+||+|.|.+.. . ...++++|||||||||||++|++
T Consensus 87 ~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~ 166 (275)
T 1umk_A 87 YFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIR 166 (275)
T ss_dssp CCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHH
T ss_pred eccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHH
Confidence 8 7799999999999999999999999986421 0 13579999999999999999999
Q ss_pred HHHHh-C-CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC-
Q psy8246 407 WSIQS-Q-RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS- 482 (527)
Q Consensus 407 ~l~~~-~-~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~- 482 (527)
+++.. . ..+++|+|++|+.+|++|++||++++++++ +++++...+++.....+ ..+++...+ +.+.+..
T Consensus 167 ~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~---~~g~v~~~~----l~~~l~~~ 239 (275)
T 1umk_A 167 AIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDY---GQGFVNEEM----IRDHLPPP 239 (275)
T ss_dssp HHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSS---EESSCCHHH----HHHHSCCG
T ss_pred HHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccC---ccCccCHHH----HHHhcCCC
Confidence 99876 2 579999999999999999999999987754 68877655553221111 234443322 2222221
Q ss_pred -CCcEEEEcCchHHHH-HHHHHHHHh
Q psy8246 483 -NSLVYSQLNLPYAVA-AVADKMTGM 506 (527)
Q Consensus 483 -~~~~~yiCGPp~m~~-~v~~~L~~l 506 (527)
....+|+|||++|++ ++++.|+++
T Consensus 240 ~~~~~vyvCGp~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 240 EEEPLVLMCGPPPMIQYACLPNLDHV 265 (275)
T ss_dssp GGCCEEEEESCHHHHHHTTHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 246788999999999 999999876
No 7
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=8.1e-34 Score=283.01 Aligned_cols=219 Identities=18% Similarity=0.206 Sum_probs=178.0
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
..|+.++|++++.+++++++|+|+.+.. ..|+|||||.|+++..|....|+|||++.+ ..+.++|+||.+++
T Consensus 17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~------~~~~~~~~v~~~~~ 88 (271)
T 4fk8_A 17 SKFDTATVLSVHHWTDTLFSFTCTRDQA--LRFNNGEFTMVGLEVDGKPLTRAYSIVSPN------YEEHLEFFSIKVQN 88 (271)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEECCCTT--CCCCTTCEEEEEEEETTEEEEEEEECCSCT------TSSSEEEEEECCTT
T ss_pred ccceeEEEEEEEEcCCCEEEEEEEcCCC--CCcCCCCEEEEEccCCCceeeeeEeccCCC------CCCcEEEEEEEECC
Confidence 4588999999999999999999998763 459999999999998888889999999976 56789999999989
Q ss_pred CCchHhhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhH
Q psy8246 354 GLLSPLLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWR 431 (527)
Q Consensus 354 G~~S~~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~ 431 (527)
|.+|++|+++++||.|.|. ||+|.|.+......++++|||||||||||+++++++.... ..+++|+|++|+.+|+++.
T Consensus 89 G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~ 168 (271)
T 4fk8_A 89 GPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYM 168 (271)
T ss_dssp CTTHHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHCSEEEEEECCCSHHHHHHH
T ss_pred CchhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHH
Confidence 9999999999999999999 9999998765335789999999999999999999988655 5899999999999999999
Q ss_pred HHHHHHHhcCC--------CCeEeccCCCCCCcccccccccchhhhhhchhHHHhh-----hcCCCcEEEEcCchHHHHH
Q psy8246 432 DQLDTFASKNS--------KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL-----LNSNSLVYSQLNLPYAVAA 498 (527)
Q Consensus 432 ~eL~~l~~~~~--------~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l-----~~~~~~~~yiCGPp~m~~~ 498 (527)
++|++++++++ +++++...+++..+ ..+++.+.+.+..+.+. .+.....+|+|||++|+++
T Consensus 169 ~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~------~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~~~ 242 (271)
T 4fk8_A 169 DYIKHDLPGHEYLGDVIREKLVYYPTVTREEFE------NEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKD 242 (271)
T ss_dssp HHHHTCCTTCTTHHHHHHHHEEEEECC-------------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHHHH
T ss_pred HHHHHHHHhCccccccccceEEEEEEecCCccc------cccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHHHH
Confidence 99999887654 56777766665432 23455444433222221 1234567889999999999
Q ss_pred HHHHHHHh
Q psy8246 499 VADKMTGM 506 (527)
Q Consensus 499 v~~~L~~l 506 (527)
+++.|+++
T Consensus 243 v~~~l~~~ 250 (271)
T 4fk8_A 243 TTELLKKA 250 (271)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999877
No 8
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=3.1e-33 Score=276.61 Aligned_cols=218 Identities=21% Similarity=0.237 Sum_probs=176.9
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.|+.++|++++.++++++.|+|+.+.. +.|+|||||.|+++..|....|+|||++.+ ..+.++|+||.+++|
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~--~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~------~~~~~~~~i~~~~~G 73 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG--LRFKTGQFVMIGLEVDGRPLMRAYSIASPN------YEEHLEFFSIKVPDG 73 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT--CCCCTTCEEEEEEEETTEEEEEEEECCSCT------TSSEEEEEEECCTTC
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC--CccCCCCEEEEEecCCCCceeeeeEeecCC------CCCeEEEEEEEeCCC
Confidence 478899999999999999999998764 359999999999987787889999999976 458999999999899
Q ss_pred CchHhhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|++|+++++||.|.|. ||+|.|.+......++++|||||||||||++|++++...+ ..+++|+|++|+.+|++|.+
T Consensus 74 ~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~ 153 (257)
T 2qdx_A 74 PLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYAD 153 (257)
T ss_dssp TTHHHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGGCTTHH
T ss_pred cchhHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCCCeEEEEEEcCCHHHhHhHH
Confidence 999999999999999999 9999998764223689999999999999999999987654 57999999999999999999
Q ss_pred HHH-HHHh-----cC--CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-----cCCCcEEEEcCchHHHHHH
Q psy8246 433 QLD-TFAS-----KN--SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-----NSNSLVYSQLNLPYAVAAV 499 (527)
Q Consensus 433 eL~-~l~~-----~~--~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-----~~~~~~~yiCGPp~m~~~v 499 (527)
+|+ ++++ ++ ++|+++...+++..+ ..+++.+.+....+.+.+ +.....+|+|||++|++++
T Consensus 154 el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~------~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v 227 (257)
T 2qdx_A 154 FITKVLPEHEYFGDQVKEKLIYYPLVTREPFR------NQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEET 227 (257)
T ss_dssp HHHTTGGGCTTTHHHHHHHEEEEEEESSSCCS------SBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHHHH
T ss_pred HHHHHHHhchhhhccCCCcEEEEEEecCCCcc------cCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHHHH
Confidence 999 8875 22 467776655554321 134444444332222221 2245678899999999999
Q ss_pred HHHHHHh
Q psy8246 500 ADKMTGM 506 (527)
Q Consensus 500 ~~~L~~l 506 (527)
++.|+++
T Consensus 228 ~~~l~~~ 234 (257)
T 2qdx_A 228 SAVLDSF 234 (257)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999875
No 9
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=7.2e-33 Score=291.43 Aligned_cols=222 Identities=16% Similarity=0.224 Sum_probs=186.1
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcCc-----ccCCccEEEEEEEeC--Ce--eeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMFF-----YVPVGHHVFIKFIVN--DV--DISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~-----~~~pGQ~v~l~~~~~--g~--~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
.|++++|++++.++++++.|+|+.+++..+ .|+|||||.|+++.+ +. ...|+|||++.+ +.+.++
T Consensus 148 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p------~~~~~~ 221 (399)
T 4g1v_A 148 GWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAS------TKNGLR 221 (399)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSC------CTTCEE
T ss_pred cceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCC------CCCeEE
Confidence 588999999999999999999999876544 689999999998655 43 578999999976 567899
Q ss_pred EEEEEe------CCCCchHhhh-cCCCCCEEEEeccccccccCCCC----CCccEEEEEecCCchhHHHHHHHHHHhC-C
Q psy8246 346 FLIKSY------EDGLLSPLLC-GLREGQELEVSSPEGKFDVGLIG----KRNKLVLLAAGTGLTPMIPVINWSIQSQ-R 413 (527)
Q Consensus 346 l~IK~y------~~G~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~----~~~~ivlIAgGtGItP~l~ll~~l~~~~-~ 413 (527)
|.||++ ++|.+|+||+ ++++||.|.|.||+|.|.++. . ..++++|||||||||||++|+++++..+ .
T Consensus 222 i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~-~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~ 300 (399)
T 4g1v_A 222 FAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINK-ELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN 300 (399)
T ss_dssp EEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCT-TTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT
T ss_pred EEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCc-ccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC
Confidence 999995 5899999997 699999999999999998865 2 4789999999999999999999999876 6
Q ss_pred CcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCch
Q psy8246 414 QSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLP 493 (527)
Q Consensus 414 ~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp 493 (527)
.+++|+|++|+.+|++|+++|++++++.++++++...++.. | ++. ...+.+.... ...+|+|||+
T Consensus 301 ~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~----g------~~~----~~~l~~~~~~-~~~vyvCGp~ 365 (399)
T 4g1v_A 301 RPIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE----P------LIN----AAFLKEKSPA-HADVYTCGSL 365 (399)
T ss_dssp SCEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS----C------CCC----HHHHHHHSCS-SCEEEEEECH
T ss_pred CCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC----C------ccc----HHHHHhhCCC-CCEEEEECCH
Confidence 89999999999999999999999998888888877665543 2 221 2233334333 5678899999
Q ss_pred HHHHHHHHHHHHh---hhhcCCCCCCCC
Q psy8246 494 YAVAAVADKMTGM---ENKMNPEIPPNN 518 (527)
Q Consensus 494 ~m~~~v~~~L~~l---~~~m~~~~~~~~ 518 (527)
+|++++++.|+++ ..++..|.++++
T Consensus 366 ~m~~~v~~~L~~~Gv~~~~i~~E~Fgp~ 393 (399)
T 4g1v_A 366 AFMQAMIGHLKELEHRDDMIHYEPFGPK 393 (399)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESSCG
T ss_pred HHHHHHHHHHHHcCCCHHHeeeeccCCc
Confidence 9999999999987 677888877653
No 10
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=7e-33 Score=291.13 Aligned_cols=232 Identities=12% Similarity=0.130 Sum_probs=185.4
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCe--eeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDV--DISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~--~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
.|++++|++++.++++++.|+|+.+++.. ..|+|||||.|+++.+|. ...|+|||++.+ ..+.++|.||++
T Consensus 151 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p------~~~~~~i~Vk~~ 224 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKP------DGKGYRIAVKRE 224 (396)
T ss_dssp SEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCC------CSSCEEEEEECC
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCC------CCCeEEEEEEEc
Confidence 58899999999999999999999987543 359999999999985453 578999999976 567899999998
Q ss_pred CCCCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhh
Q psy8246 352 EDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDII 429 (527)
Q Consensus 352 ~~G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~ 429 (527)
++|.+|+||++ +++||.|.|+||+|.|.+.. +..++++|||||||||||++|++++...+ ..+++|+|++|+.+|++
T Consensus 225 ~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~-~~~~~~vlIagGtGitP~~s~l~~l~~~~~~~~v~l~~~~r~~~~~~ 303 (396)
T 1gvh_A 225 EGGQVSNWLHNHANVGDVVKLVAPAGDFFMAV-ADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHA 303 (396)
T ss_dssp TTCHHHHHHHHTCCTTCEEEEEEEECSCCCCC-CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCTTTCC
T ss_pred CCCcchHHHHhcCCCCCEEEEEcCCcceECCC-CCCCCEEEEecchhHhHHHHHHHHHHhcCCCCcEEEEEEeCCHHHhh
Confidence 88999999997 99999999999999998864 35789999999999999999999999876 68999999999999999
Q ss_pred hHHHHHHHHhcCCCCeEeccCCCCCCccc-c-cccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh-
Q psy8246 430 WRDQLDTFASKNSKPSSPRNPSTEIKPLK-N-IISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM- 506 (527)
Q Consensus 430 ~~~eL~~l~~~~~~~~~~~~~s~~~~~~~-g-~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l- 506 (527)
|+++|+++++++++++++...++...... + .....+++... .+.+........+|+|||++|++++++.|+++
T Consensus 304 ~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~----~l~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 304 FADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLS----KLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLG 379 (396)
T ss_dssp SHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGG----GSSSCCCCTTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHH----HHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 99999999988778888765555321100 0 00112333221 12221011146788999999999999999987
Q ss_pred --hhhcCCCCCCC
Q psy8246 507 --ENKMNPEIPPN 517 (527)
Q Consensus 507 --~~~m~~~~~~~ 517 (527)
..++..|.+++
T Consensus 380 v~~~~i~~E~F~~ 392 (396)
T 1gvh_A 380 VKQENIHYECFGP 392 (396)
T ss_dssp CCGGGEEEECSSS
T ss_pred CCHHHEEEeccCC
Confidence 56788888854
No 11
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=8.5e-33 Score=275.24 Aligned_cols=225 Identities=22% Similarity=0.374 Sum_probs=174.2
Q ss_pred CCceEEEEEEEEEEecCCEEEEEEEeCCCc-CcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 273 VSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 273 ~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~-~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
+..++.++|++++.++++++.|+|+.+... ...++|||||+|+++.+|....|+|||++.+. +.+.++|+||++
T Consensus 9 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-----~~~~~~l~vk~~ 83 (270)
T 2cnd_A 9 PRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD-----EIGHFDLLVKVY 83 (270)
T ss_dssp --CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTT-----CCSEEEEEEECC
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCcc-----CCCEEEEEEEEe
Confidence 345788999999999999999999988753 34599999999999888888899999999763 568999999986
Q ss_pred ---------CCCCchHhhhcCCCCCEEEEecccccc--------ccCCC-CCCccEEEEEecCCchhHHHHHHHHHHhC-
Q psy8246 352 ---------EDGLLSPLLCGLREGQELEVSSPEGKF--------DVGLI-GKRNKLVLLAAGTGLTPMIPVINWSIQSQ- 412 (527)
Q Consensus 352 ---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f--------~~~~~-~~~~~ivlIAgGtGItP~l~ll~~l~~~~- 412 (527)
++|.+|+||+++++||.|.|.||+|.| .+... ...++++|||||||||||++|+++++...
T Consensus 84 ~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~ 163 (270)
T 2cnd_A 84 FKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP 163 (270)
T ss_dssp CSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT
T ss_pred ccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC
Confidence 468899999999999999999999984 33320 14689999999999999999999999862
Q ss_pred --CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcC--CCcEE
Q psy8246 413 --RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNS--NSLVY 487 (527)
Q Consensus 413 --~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~--~~~~~ 487 (527)
..+++|+|++|+.+|++|++||++++++++ +++++...++......+.....+++...+ +.+.+.. ....+
T Consensus 164 ~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~----l~~~l~~~~~~~~v 239 (270)
T 2cnd_A 164 EDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAV----LREHVPEGGDDTLA 239 (270)
T ss_dssp TCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHH----HHHHSCCCSSSEEE
T ss_pred CCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHH----HHHhcCCCcCCEEE
Confidence 479999999999999999999999987754 68776655442111011111234443322 2333322 24568
Q ss_pred EEcCchHHHHH-HHHHHHHh
Q psy8246 488 SQLNLPYAVAA-VADKMTGM 506 (527)
Q Consensus 488 yiCGPp~m~~~-v~~~L~~l 506 (527)
|+|||++|+++ +++.|+++
T Consensus 240 yvCGp~~m~~~~~~~~L~~~ 259 (270)
T 2cnd_A 240 LACGPPPMIQFAISPNLEKM 259 (270)
T ss_dssp EEECCHHHHHTTTHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHHc
Confidence 89999999997 58888875
No 12
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=5.4e-33 Score=270.50 Aligned_cols=219 Identities=12% Similarity=0.114 Sum_probs=169.0
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
+.++|++++.++++++.|+|+.+. .+.|+|||||.|+++. ...|+|||++.+. +.+.++|.||++++|.+
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~--~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~-----~~~~l~l~i~~~~~G~~ 72 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDA--AFSFRAGQYLMVVMDE---RDKRPFSMASTPD-----EKGFIELHIGASEINLY 72 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESS--CCCCCTTCEEEEESSS---SCEEEEECCSCTT-----STTCEEEEEC------C
T ss_pred eEEEEEEEEecCCCEEEEEEecCC--CCCcCCCCEEEEECCC---CceeeeecCCCCC-----CCCcEEEEEEEccCCch
Confidence 569999999999999999999875 3469999999999852 4789999999863 46799999999988887
Q ss_pred hHh-hhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHHHH
Q psy8246 357 SPL-LCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQL 434 (527)
Q Consensus 357 S~~-L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~eL 434 (527)
|.+ +.++++||+|.|.||+|.|.+.. ...++++|||||||||||++|+++++..+ ..+++|+|++|+.+|++++++|
T Consensus 73 s~~~~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~el 151 (232)
T 1qfj_A 73 AKAVMDRILKDHQIVVDIPHGEAWLRD-DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCEL 151 (232)
T ss_dssp CHHHHHHHHHHSEEEEEEEECSCCCCS-CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTHHHH
T ss_pred hHHHHHhCCCCCEEEEeCCccceEeCC-CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhhhHHHH
Confidence 775 56699999999999999998765 35689999999999999999999999876 6799999999999999999999
Q ss_pred HHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHH-HHh---hhhc
Q psy8246 435 DTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKM-TGM---ENKM 510 (527)
Q Consensus 435 ~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L-~~l---~~~m 510 (527)
+++++++++++++...++...+..+ ..+++.+.+. +.+.+.....+|+|||++|++++++.| +++ ..++
T Consensus 152 ~~l~~~~~~~~~~~~~s~~~~~~~g---~~g~v~~~~~----~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i 224 (232)
T 1qfj_A 152 EALSLKHPGLQVVPVVEQPEAGWRG---RTGTVLTAVL----QDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRL 224 (232)
T ss_dssp HHHHHHCTTEEEEEEESSCCTTCCS---EESCHHHHHH----HHCSCCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGE
T ss_pred HHHHHHCCCeEEEEEEcCCCCCcCC---ceeeHHHHHH----HhcCCccccEEEEECCHHHHHHHHHHHHHHcCCCHHHE
Confidence 9998877788887655443321111 2344433222 222233346788999999999999999 765 3444
Q ss_pred CCC
Q psy8246 511 NPE 513 (527)
Q Consensus 511 ~~~ 513 (527)
..|
T Consensus 225 ~~E 227 (232)
T 1qfj_A 225 FGD 227 (232)
T ss_dssp ECT
T ss_pred EEe
Confidence 444
No 13
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=1.6e-32 Score=289.10 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=184.4
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCCcC-cccCCccEEEEEEEeCCe--eeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSPMF-FYVPVGHHVFIKFIVNDV--DISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~~~-~~~~pGQ~v~l~~~~~g~--~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
.|++++|++++.++++++.|+|+.+++.. ..|+|||||.|+++.++. ...|+|||++.+ ..+.++|.||++
T Consensus 153 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p------~~~~~~i~Vk~~ 226 (403)
T 1cqx_A 153 GWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMP------NGRTYRISVKRE 226 (403)
T ss_dssp SCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCC------CSSCEEEEEECC
T ss_pred cceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCC------CCCeEEEEEEEC
Confidence 47899999999999999999999987543 359999999999986553 578999999976 567899999998
Q ss_pred C-----CCCchHhhhc-CCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCC
Q psy8246 352 E-----DGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRT 424 (527)
Q Consensus 352 ~-----~G~~S~~L~~-l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~ 424 (527)
+ +|.+|+||++ +++||.|.|+||+|.|.+.. +..++++|||||||||||++|++++.. . ..+++|+|++|+
T Consensus 227 ~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~-~~~~~~vlIagGtGitP~~s~l~~l~~-~~~~~v~l~~~~r~ 304 (403)
T 1cqx_A 227 GGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDV-DAKTPIVLISGGVGLTPMVSMLKVALQ-APPRQVVFVHGARN 304 (403)
T ss_dssp CBTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCT-TCCSCEEEEESSCCHHHHHHHHHHHTC-SSCCCEEEEEEESC
T ss_pred CCCCCCCCeehHHHhhCCCCCCEEEEecCccCcccCC-CCCCCEEEEEecccHhhHHHHHHHHHh-CCCCcEEEEEEeCC
Confidence 6 6999999995 99999999999999998854 357899999999999999999999987 3 479999999999
Q ss_pred CchhhhHHHHHHHHhcCCCCeEeccCCCCCCccc-c-cccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHH
Q psy8246 425 EQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLK-N-IISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADK 502 (527)
Q Consensus 425 ~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~-g-~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~ 502 (527)
.+|++|+++|+++++++++++++...++...... + .....+++... .+.+........+|+|||++|++++++.
T Consensus 305 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~----~l~~~~~~~~~~vyvCGp~~m~~~v~~~ 380 (403)
T 1cqx_A 305 SAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVK----QIEKSILLPDADYYICGPIPFMRMQHDA 380 (403)
T ss_dssp SSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGG----GSHHHHCCTTCEEEEESSHHHHHHHHHH
T ss_pred hhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHH----HHhhccCCCCCEEEEeCCHHHHHHHHHH
Confidence 9999999999999988778887655544321100 0 00112344322 1222111114678899999999999999
Q ss_pred HHHh---hhhcCCCCCCC
Q psy8246 503 MTGM---ENKMNPEIPPN 517 (527)
Q Consensus 503 L~~l---~~~m~~~~~~~ 517 (527)
|+++ ..++..|.+.+
T Consensus 381 L~~~Gv~~~~i~~E~F~~ 398 (403)
T 1cqx_A 381 LKNLGIHEARIHYEVFGP 398 (403)
T ss_dssp HHHTTCCGGGEEECCCSS
T ss_pred HHHcCCCHHHeEEeeecC
Confidence 9987 67788888865
No 14
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=8.2e-33 Score=281.37 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=177.3
Q ss_pred CceEEEEEEEEEEecCC-----EEEEEEEeCCCcCcccCCccEEEEEEEe---CCee-eeeeeeccCCCCCCCCCCCCEE
Q psy8246 274 SKFNTMRLLHQEQVTHN-----VVLITLEYTSPMFFYVPVGHHVFIKFIV---NDVD-ISKPYTPVEPLQAAPLSYSNTL 344 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d-----~~~~~~~~p~~~~~~~~pGQ~v~l~~~~---~g~~-~~R~YT~~s~~~~~~~~~~~~l 344 (527)
.....++|++++.++++ ++.|+|+.+. .+.|.|||||.|+++. +|.. ..|+|||++.+..+ ..+.+.+
T Consensus 31 ~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~-~~~~~~~ 107 (310)
T 3vo2_A 31 KEPYVGRCLSNTRITGDDAPGETWHMVFSTEG--EIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGD-FGDSKTV 107 (310)
T ss_dssp TBCEEEEEEEEEECSCSSSSSCEEEEEEECTT--CCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTT-TTSSSEE
T ss_pred CCCEEEEEEEEEEccCCCCCccEEEEEEeCCC--CCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCccc-CCCCCEE
Confidence 34578999999999998 9999999764 3459999999999853 2332 58999999986310 0036799
Q ss_pred EEEEEEeC---------CCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC---
Q psy8246 345 TFLIKSYE---------DGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--- 412 (527)
Q Consensus 345 ~l~IK~y~---------~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--- 412 (527)
+|+||+++ +|.+|+||+++++||.|.|.||+|.|.+.+....++++|||||||||||++|+++++...
T Consensus 108 ~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 187 (310)
T 3vo2_A 108 SLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHED 187 (310)
T ss_dssp EEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTT
T ss_pred EEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhccc
Confidence 99999873 699999999999999999999999976544245689999999999999999999998653
Q ss_pred ---CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcE
Q psy8246 413 ---RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLV 486 (527)
Q Consensus 413 ---~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~ 486 (527)
..+++|+|++|+.+|++|++||++++++++ +|+++...+++.....+. .+++++.+.. ..+.+.+......
T Consensus 188 ~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~---~~~v~~~l~~~~~~l~~~l~~~~~~ 264 (310)
T 3vo2_A 188 YKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGE---KMYIQTRMAEYREELWELLKKDNTY 264 (310)
T ss_dssp CCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCC---BCCHHHHHHTTHHHHHHHHTSTTEE
T ss_pred ccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCc---ceehHHHHHHHHHHHHHhcccCCcE
Confidence 268999999999999999999999998764 889887776654321111 2233333322 2233344444678
Q ss_pred EEEcCchHHHHHHHHHHHHhh
Q psy8246 487 YSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 487 ~yiCGPp~m~~~v~~~L~~l~ 507 (527)
+|+|||++|+++++++|.++.
T Consensus 265 vyvCGp~~M~~~v~~~L~~~~ 285 (310)
T 3vo2_A 265 VYMCGLKGMEKGIDDIMLNLA 285 (310)
T ss_dssp EEEEESTTHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHH
Confidence 889999999999999999883
No 15
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=1.4e-32 Score=274.41 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=176.4
Q ss_pred eEEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEe-CCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCC
Q psy8246 276 FNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIV-NDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDG 354 (527)
Q Consensus 276 ~~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G 354 (527)
.+.++|++++.+++++++|+|+.+.. +.|+|||||.|+++. +|....|+|||++.+ ..+.++|+||.+++|
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~~~--~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~------~~~~~~l~v~~~~~G 87 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRPQT--LRFRSGEFVMIGLLDDNGKPIMRAYSIASPA------WDEELEFYSIKVPDG 87 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCTT--CCCCTTCEEEEEEECTTSCEEEEEEECCSCT------TCSEEEEEEECCTTC
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCCCC--CccCCCCEEEEEeccCCCCeeeeeeeeccCC------CCCeEEEEEEEccCC
Confidence 46799999999999999999998754 359999999999984 566789999999976 458999999999899
Q ss_pred CchHhhhcCCCCCEEEEe-ccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhHH
Q psy8246 355 LLSPLLCGLREGQELEVS-SPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRD 432 (527)
Q Consensus 355 ~~S~~L~~l~~Gd~v~i~-GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~~ 432 (527)
.+|+||+++++||.|.|. ||+|.|.+......++++|||||||||||++|++++...+ ..+++|+|++|+.+|++|++
T Consensus 88 ~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~ 167 (272)
T 2bgi_A 88 PLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVAELEYGR 167 (272)
T ss_dssp TTHHHHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSGGGHHHH
T ss_pred CchhHHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcCCCCcEEEEEEeCCHHHhhHHH
Confidence 999999999999999999 9999998765223689999999999999999999987664 57999999999999999999
Q ss_pred HHH-HHHh-----cC--CCCeEeccCCCCCCcccccccccchhhhhhchhHHHhh-----hcCCCcEEEEcCchHHHHHH
Q psy8246 433 QLD-TFAS-----KN--SKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDL-----LNSNSLVYSQLNLPYAVAAV 499 (527)
Q Consensus 433 eL~-~l~~-----~~--~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l-----~~~~~~~~yiCGPp~m~~~v 499 (527)
+|+ +|++ ++ ++|+++...+++..+ ..+++...+....+.+. .+.....+|+|||++|++++
T Consensus 168 el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~~------~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~~v 241 (272)
T 2bgi_A 168 QLVEALQEDPLIGELVEGKLKYYPTTTREEFH------HMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFNVDV 241 (272)
T ss_dssp HHHHHHHHCTTTTTTSTTTEEEEEEESSSCCS------SBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHHHHH
T ss_pred HHHHHHHhcchhhcccCCcEEEEEEecCCccc------cCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHHHHH
Confidence 999 9986 43 688877666655322 13445444433222222 12235678899999999999
Q ss_pred HHHHHHh
Q psy8246 500 ADKMTGM 506 (527)
Q Consensus 500 ~~~L~~l 506 (527)
++.|+++
T Consensus 242 ~~~l~~~ 248 (272)
T 2bgi_A 242 MKVLESY 248 (272)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 9999875
No 16
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=1.6e-32 Score=282.50 Aligned_cols=214 Identities=15% Similarity=0.168 Sum_probs=176.0
Q ss_pred ceEEEEEEEEEEecCCEEEEEEEeCCC-cCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC
Q psy8246 275 KFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED 353 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d~~~~~~~~p~~-~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~ 353 (527)
.++.++|++++.+++++++|+|+.+.. ....|.|||||.|+++ +....|+||+++.+ ..+.++|+||++++
T Consensus 107 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~------~~~~l~~~vk~~~~ 178 (338)
T 1krh_A 107 HHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLP--GTTETRSYSFSSQP------GNRLTGFVVRNVPQ 178 (338)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECT--TSSCEEEEECCSCT------TCSEEEEEEECCTT
T ss_pred eEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcC--CCCccccccccCCC------CCCeEEEEEEEcCC
Confidence 467899999999999999999999864 2345999999999875 43578999999976 57899999999999
Q ss_pred CCchHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCCchhhhH
Q psy8246 354 GLLSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWR 431 (527)
Q Consensus 354 G~~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~~di~~~ 431 (527)
|.+|+||+ ++++||.|.|.||+|.|.+.. ..++++|||||||||||++|++++...+ ..+++|+|++|+.+|++|.
T Consensus 179 G~~S~~L~~~l~~Gd~v~v~gP~G~f~~~~--~~~~~vliagGtGiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~~~~ 256 (338)
T 1krh_A 179 GKMSEYLSVQAKAGDKMSFTGPFGSFYLRD--VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVAL 256 (338)
T ss_dssp CHHHHHHHTTCCTTCEEEEEEEECSCSCCC--CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCH
T ss_pred CCchhhHhhccCCCCEEEEECCccceEeCC--CCceEEEEEccccHhHHHHHHHHHHHcCCCCeEEEEEEeCCHHHhhhH
Confidence 99999996 699999999999999998765 2489999999999999999999999876 5799999999999999999
Q ss_pred HHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 432 DQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 432 ~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++|++++++.++|+++...+++.... ...+++.+.+....+.+ ....+|+|||++|++++++.|+++
T Consensus 257 ~el~~l~~~~~~~~~~~~~s~~~~~~----~~~g~v~~~l~~~~~~~----~~~~vy~CGp~~m~~~v~~~l~~~ 323 (338)
T 1krh_A 257 EQLDALQQKLPWFEYRTVVAHAESQH----ERKGYVTGHIEYDWLNG----GEVDVYLCGPVPMVEAVRSWLDTQ 323 (338)
T ss_dssp HHHHHHHHHCTTEEEEEEETTCCSSS----SEESCSGGGCCGGGGGG----GCSEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEEecCCCCC----CccCccCHHHHHhhccc----CCcEEEEECCHHHHHHHHHHHHHc
Confidence 99999988777888876655533210 12344544443322222 235688999999999999999876
No 17
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=4.6e-32 Score=275.79 Aligned_cols=228 Identities=13% Similarity=0.157 Sum_probs=175.8
Q ss_pred CCceEEEEEEEEEEec-----CCEEEEEEEeCCCcCcccCCccEEEEEEEeC-----Ce-eeeeeeeccCCCCCCCCCCC
Q psy8246 273 VSKFNTMRLLHQEQVT-----HNVVLITLEYTSPMFFYVPVGHHVFIKFIVN-----DV-DISKPYTPVEPLQAAPLSYS 341 (527)
Q Consensus 273 ~~~~~~~~v~~~~~vs-----~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~-----g~-~~~R~YT~~s~~~~~~~~~~ 341 (527)
+...+.++|++++.++ ++++.|+|+.+.. +.|+|||||.|+++.. |. ...|+|||++.+..+ ..+.
T Consensus 25 ~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~-~~~~ 101 (311)
T 3lo8_A 25 PKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD-NFDG 101 (311)
T ss_dssp TTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS--SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT-TTSS
T ss_pred CCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC--CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc-CCCC
Confidence 4457789999999999 9999999998754 4599999999998753 22 478999999986310 0024
Q ss_pred CEEEEEEEEe-------------CCCCchHhhhcCCCCCEEEEeccccccccCC-CCCCccEEEEEecCCchhHHHHHHH
Q psy8246 342 NTLTFLIKSY-------------EDGLLSPLLCGLREGQELEVSSPEGKFDVGL-IGKRNKLVLLAAGTGLTPMIPVINW 407 (527)
Q Consensus 342 ~~l~l~IK~y-------------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~-~~~~~~ivlIAgGtGItP~l~ll~~ 407 (527)
+.++|+||++ ++|.+|+||+++++||.|.|.||+|.|.+.. ....++++|||||||||||++|+++
T Consensus 102 ~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~ 181 (311)
T 3lo8_A 102 RTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRR 181 (311)
T ss_dssp SEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHH
T ss_pred CEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHH
Confidence 7999999987 6799999999999999999999999987543 1357899999999999999999999
Q ss_pred HHHhC------CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhchh--HHHh
Q psy8246 408 SIQSQ------RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKRV--ELED 478 (527)
Q Consensus 408 l~~~~------~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~--~l~~ 478 (527)
++... ..+++|+|++|+.+|++|+++|++++++.+ +|+++...+++.....+ ..+++++.+... .+.+
T Consensus 182 ~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g---~~~~v~~~l~~~~~~~~~ 258 (311)
T 3lo8_A 182 MFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSG---GKMYVQDKIEEYSDEIFK 258 (311)
T ss_dssp HHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC----------CCHHHHHHHTHHHHHH
T ss_pred HHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCC---CcceehHHHHHHHHHHHH
Confidence 98654 157999999999999999999999998764 88888776665422111 122333333221 1222
Q ss_pred hhcCCCcEEEEcCchHHHHHHHHHHHHhh
Q psy8246 479 LLNSNSLVYSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 479 l~~~~~~~~yiCGPp~m~~~v~~~L~~l~ 507 (527)
+.. ....+|+|||++|++++++.|+++.
T Consensus 259 ~~~-~~~~vyvCGp~~m~~~v~~~L~~~~ 286 (311)
T 3lo8_A 259 LLD-GGAHIYFCGLKGMMPGIQDTLKKVA 286 (311)
T ss_dssp HHH-TTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred hhc-CCcEEEEECCHHHHHHHHHHHHHHH
Confidence 222 3467789999999999999999984
No 18
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=1e-31 Score=274.63 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=176.0
Q ss_pred CCCceEEEEEEEEEEecCCEEEEEEEeCCCcCc-ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEE
Q psy8246 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPMFF-YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKS 350 (527)
Q Consensus 272 ~~~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~-~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~ 350 (527)
++..|+.++|++++.++++++.|+|+.++...+ .|+|||||.|+++ ++ ..|+||+++.+. +.+.++|.||+
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~-----~~~~l~i~Vk~ 75 (321)
T 2pia_A 4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP-NG--SRRTYSLCNDSQ-----ERNRYVIAVKR 75 (321)
T ss_dssp TTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECT-TS--CEEEEECCSCTT-----CCSEEEEEEEC
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECC-CC--CcEEEEeCCCCC-----CCCeEEEEEEE
Confidence 345689999999999999999999999876443 5999999999986 33 889999999763 56899999999
Q ss_pred eCCCC-chHhhh-cCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchh
Q psy8246 351 YEDGL-LSPLLC-GLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDI 428 (527)
Q Consensus 351 y~~G~-~S~~L~-~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di 428 (527)
+++|. +|+||+ ++++||.|.|.||+|.|.+.. ..++++|||||||||||++|++++...+..+++|+|++|+.+|+
T Consensus 76 ~~~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~--~~~~~vliagG~GItP~~s~l~~l~~~~~~~v~l~~~~r~~~~~ 153 (321)
T 2pia_A 76 DSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDK--RAKSFILVAGGIGITPMLSMARQLRAEGLRSFRLYYLTRDPEGT 153 (321)
T ss_dssp CTTSCSHHHHHHHSCCTTCEEEECCCBCCSCCCT--TCSEEEEEEEGGGHHHHHHHHHHHHHHCSSEEEEEEEESCGGGC
T ss_pred ecCCcchhHHHHhcCCCCCEEEEeCCccccccCC--CCCCEEEEEecccHhHHHHHHHHHHHcCCCcEEEEEEECChhhh
Confidence 98898 999999 799999999999999998865 36899999999999999999999987643689999999999999
Q ss_pred hhHHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh-h
Q psy8246 429 IWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM-E 507 (527)
Q Consensus 429 ~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l-~ 507 (527)
+|+++|++++ ..++++++... +... ++. .+.. .+... .....+|+|||++|++++++.|+++ .
T Consensus 154 ~~~~el~~l~-~~~~~~~~~~~--~~~~--g~~----~~~~-----ll~~~--~~~~~vyvCGP~~m~~~v~~~l~~~~~ 217 (321)
T 2pia_A 154 AFFDELTSDE-WRSDVKIHHDH--GDPT--KAF----DFWS-----VFEKS--KPAQHVYCCGPQALMDTVRDMTGHWPS 217 (321)
T ss_dssp TTHHHHHSTT-TTTTEEEEECT--TCTT--SCC----CHHH-----HHSSC--CTTEEEEEESCHHHHHHHHHHTTTSCT
T ss_pred HHHHHHhcCc-cCCeEEEEECC--Cccc--Ccc----CHHH-----Hhccc--CCCCEEEEECCHHHHHHHHHHHHhCCH
Confidence 9999999886 34577776422 1110 110 1111 11111 1346788999999999999999875 4
Q ss_pred hhcCCCCCCCC
Q psy8246 508 NKMNPEIPPNN 518 (527)
Q Consensus 508 ~~m~~~~~~~~ 518 (527)
.++..|.+.++
T Consensus 218 ~~i~~E~F~~~ 228 (321)
T 2pia_A 218 GTVHFESFGAT 228 (321)
T ss_dssp TCEEEECCCCC
T ss_pred hhEEEEecCCC
Confidence 55666666544
No 19
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.98 E-value=2e-31 Score=271.50 Aligned_cols=228 Identities=17% Similarity=0.197 Sum_probs=173.7
Q ss_pred CceEEEEEEEEEEecC-----CEEEEEEEeCCCcCcccCCccEEEEEEEeC---Ce-eeeeeeeccCCCCCCCCCCCCEE
Q psy8246 274 SKFNTMRLLHQEQVTH-----NVVLITLEYTSPMFFYVPVGHHVFIKFIVN---DV-DISKPYTPVEPLQAAPLSYSNTL 344 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~-----d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~---g~-~~~R~YT~~s~~~~~~~~~~~~l 344 (527)
..+..++|++++.+++ +++.|+|+.+.. +.|+|||||.|+++.. |. ...|+|||++.+... ..+.+.+
T Consensus 35 ~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~-~~~~~~~ 111 (314)
T 1fnb_A 35 KTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE--IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGD-FGDAKSV 111 (314)
T ss_dssp TBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC--CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCT-TSSSCEE
T ss_pred CCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC--CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCccc-CCCCCEE
Confidence 4467899999999998 899999998764 4599999999987642 22 468999999976210 0025899
Q ss_pred EEEEEEe---------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC---
Q psy8246 345 TFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--- 412 (527)
Q Consensus 345 ~l~IK~y---------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--- 412 (527)
+|+||+. ++|.+|+||+++++||.|.|.||+|.|...+....++++|||||||||||++|+++++...
T Consensus 112 ~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 191 (314)
T 1fnb_A 112 SLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDD 191 (314)
T ss_dssp EEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTT
T ss_pred EEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhcccc
Confidence 9999974 4689999999999999999999999975433234689999999999999999999998653
Q ss_pred ---CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcE
Q psy8246 413 ---RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLV 486 (527)
Q Consensus 413 ---~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~ 486 (527)
..+++|+|++|+.+|++|++||++++++.+ +|+++...+++..+..+ ..+++++.+.. ..+.+.+......
T Consensus 192 ~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g---~~~~v~~~l~~~~~~~~~~~~~~~~~ 268 (314)
T 1fnb_A 192 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKG---EKMYIQTRMAQYAVELWEMLKKDNTY 268 (314)
T ss_dssp BCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTC---CBCCHHHHHHTTHHHHHHHTTSTTEE
T ss_pred ccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCC---CceechHHHHHhHHHHHHHHhcCCeE
Confidence 268999999999999999999999987754 78887766654322111 12233333322 1122223223567
Q ss_pred EEEcCchHHHHHHHHHHHHhh
Q psy8246 487 YSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 487 ~yiCGPp~m~~~v~~~L~~l~ 507 (527)
+|+|||++|++++++.|+++.
T Consensus 269 vyvCGp~~m~~~v~~~L~~~~ 289 (314)
T 1fnb_A 269 VYMCGLKGMEKGIDDIMVSLA 289 (314)
T ss_dssp EEEEECTTHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHH
Confidence 889999999999999999873
No 20
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.98 E-value=1.1e-31 Score=266.61 Aligned_cols=206 Identities=14% Similarity=0.145 Sum_probs=165.2
Q ss_pred EEEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCc
Q psy8246 277 NTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLL 356 (527)
Q Consensus 277 ~~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~ 356 (527)
..++|++++.+++++++|+|+.+.. ...|+|||||.|+++..+....|+|||++.+. +.+.++|+||.++.|.+
T Consensus 6 ~~~~V~~~~~~t~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-----~~~~l~~~vk~~~~G~~ 79 (262)
T 1ep3_B 6 EMMTVVSQREVAYNIFEMVLKGTLV-DEMDLPGQFLHLAVPNGAMLLRRPISISSWDK-----RAKTCTILYRIGDETTG 79 (262)
T ss_dssp EEEEEEEEEEEETTEEEEEEESGGG-GGCCSTTCEEEECCSCTTCCSCEEEECCEEET-----TTTEEEEEEECCCTTSH
T ss_pred cceEEEEEEEecCCEEEEEEEcCcc-cccCCCCceEEEEcCCCCceeeEEEEeeeecC-----CCCEEEEEEEEecCCch
Confidence 4799999999999999999998752 33589999999998755567899999999763 57899999999889999
Q ss_pred hHhhhcCCCCCEEEEeccccc-cccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHH
Q psy8246 357 SPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLD 435 (527)
Q Consensus 357 S~~L~~l~~Gd~v~i~GP~G~-f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~ 435 (527)
|+||+++++||+|.|.||+|+ |.+......++++|||||||||||++|++++...+ .+++|+|++|+.+|++|+++|+
T Consensus 80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-~~v~l~~~~r~~~~~~~~~el~ 158 (262)
T 1ep3_B 80 TYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-CQMTILLGFASENVKILENEFS 158 (262)
T ss_dssp HHHHHTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-CEEEEEEEESSGGGCCCHHHHH
T ss_pred HHHHhcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-CeEEEEEEcCCHHHhhhHHHHh
Confidence 999999999999999999999 98765213689999999999999999999999876 7999999999999999999999
Q ss_pred HHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 436 TFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 436 ~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
+|+.. ++.+. ....+.+ ..+++.+ .+.+.... ...+|+|||++|++++++ |+++
T Consensus 159 ~l~~~--~~~~~--~~~~~~~------~~g~v~~-----~l~~~~~~-~~~vyvCGp~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 159 NLKNV--TLKIA--TDDGSYG------TKGHVGM-----LMNEIDFE-VDALYTCGAPAMLKAVAK-KYDQ 212 (262)
T ss_dssp TSTTE--EEEEE--ETTCSSS------EESCHHH-----HHHHCCSC-CSEEEEESCHHHHHHHHH-HTTT
T ss_pred hhccC--cEEEE--ECCCCCc------ceeehHH-----HHHhhccC-CCEEEEECCHHHHHHHHH-HHhC
Confidence 87532 33322 2222221 1233433 23333332 457889999999999999 8654
No 21
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.98 E-value=9.2e-32 Score=274.40 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=171.7
Q ss_pred eEEEEEEEEEEec-----CCEEEEEEEeCCCcCcccCCccEEEEEEEe--------------------------------
Q psy8246 276 FNTMRLLHQEQVT-----HNVVLITLEYTSPMFFYVPVGHHVFIKFIV-------------------------------- 318 (527)
Q Consensus 276 ~~~~~v~~~~~vs-----~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~-------------------------------- 318 (527)
-..|+|++++.++ ++++.++|+.+.. +.|.+|||+.|..+.
T Consensus 15 p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 92 (316)
T 3jqq_A 15 PLKCKIVDKINLVRPNSPNEVYHLEINHNGL--FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALS 92 (316)
T ss_dssp CEEEEEEEEEECSCTTCSCCEEEEEEECTTC--CCCCTTCEEEECTTCC-------------------------------
T ss_pred CEEEEEEeeEEccCCCCCCceEEEEEeCCCC--cceecCcEeEEECCCcccccccccccccccccccccccccccccccc
Confidence 4579999999998 8999999998653 569999999997643
Q ss_pred --CCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe------------CCCCchHhhhcCCCCCEEEEeccccccccCCCC
Q psy8246 319 --NDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY------------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIG 384 (527)
Q Consensus 319 --~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y------------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~ 384 (527)
+|....|+|||+|.+ ..+.++|+||+. ++|.+|+||+++++||.|.|.||+|.|.+....
T Consensus 93 ~~~g~~~~R~ySIaS~p------~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~l~~~~ 166 (316)
T 3jqq_A 93 HIKKQRCARLYSISSSN------NMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDA 166 (316)
T ss_dssp ----CCCCEEEEBCSCT------TSSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECCCCCCTTH
T ss_pred cCCCcccceeeecccCC------CCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCceEcCCcc
Confidence 244689999999986 457899999974 569999999999999999999999999876510
Q ss_pred --CCccEEEEEecCCchhHHHHHHHHHHhC-----------CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccC
Q psy8246 385 --KRNKLVLLAAGTGLTPMIPVINWSIQSQ-----------RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNP 450 (527)
Q Consensus 385 --~~~~ivlIAgGtGItP~l~ll~~l~~~~-----------~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~ 450 (527)
..++++|||||||||||++|+++++... ..+++|+|++|+.+|++|+++|++|+++.+ +|+++...
T Consensus 167 ~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~~~~~~ 246 (316)
T 3jqq_A 167 IQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVF 246 (316)
T ss_dssp HHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred cCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999999999999999999998653 268999999999999999999999998764 78887665
Q ss_pred CCCCCcccccccccchhhhhhchh--HHHhhhcCCCcEEEEcCchHHHHHHHHHHHHhh
Q psy8246 451 STEIKPLKNIISFLMRIRTTLKRV--ELEDLLNSNSLVYSQLNLPYAVAAVADKMTGME 507 (527)
Q Consensus 451 s~~~~~~~g~~~~~~ri~~~~~~~--~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l~ 507 (527)
+++.. .....+++++.+... .+.+++......+|+|||++|+++++++|+++.
T Consensus 247 s~~~~----~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G 301 (316)
T 3jqq_A 247 SYKQN----SDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHD 301 (316)
T ss_dssp GGGCC-------CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC--
T ss_pred CCCcc----cCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 55421 011123444433321 233344334567889999999999999998763
No 22
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.97 E-value=6.4e-31 Score=276.68 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=174.4
Q ss_pred ceEEEEEEEEEEecC-----CEEEEEEEeCCCcCcccCCccEEEEEEEe---CCe-eeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 275 KFNTMRLLHQEQVTH-----NVVLITLEYTSPMFFYVPVGHHVFIKFIV---NDV-DISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~-----d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~---~g~-~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
.+..++|++++.+++ +++.|+|+.+.. .+.|.|||||.|+++. +|. ...|+|||++.+..+ ..+.+.|+
T Consensus 121 ~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~-~~~~~~l~ 198 (402)
T 2b5o_A 121 TPFLGKCIENYELVDEGGSGTVRHVTFDISEG-DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGD-MEDNKTVS 198 (402)
T ss_dssp SCEEEEEEEEEECSCTTCCSCEEEEEEECTTS-CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTT-TTSSCEEE
T ss_pred CCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC-CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccc-cCCCCEEE
Confidence 457899999999999 999999998754 3569999999998753 233 478999999976310 00268999
Q ss_pred EEEEEe----------CCCCchHhhhcCCCC-CEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC--
Q psy8246 346 FLIKSY----------EDGLLSPLLCGLREG-QELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-- 412 (527)
Q Consensus 346 l~IK~y----------~~G~~S~~L~~l~~G-d~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-- 412 (527)
|+||+. +.|.+|+||+++++| |.|.|.||+|.|...+....++++|||||||||||++|+++++...
T Consensus 199 l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~ 278 (402)
T 2b5o_A 199 LCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHE 278 (402)
T ss_dssp EEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCS
T ss_pred EEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccc
Confidence 999982 368899999999999 9999999999975433234689999999999999999999998653
Q ss_pred ----CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCc
Q psy8246 413 ----RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSL 485 (527)
Q Consensus 413 ----~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~ 485 (527)
..+++|+|++|+.+|++|++||++|+++++ +|+++...+++..+..+ ..+++++.+.. ..+.+++.....
T Consensus 279 ~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g---~~~~v~~~l~~~~~~l~~~l~~~~~ 355 (402)
T 2b5o_A 279 DYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADG---GKVYVQSRVSEYADELFEMIQKPNT 355 (402)
T ss_dssp SCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTS---CBCCHHHHHHHTHHHHHHHHTSTTE
T ss_pred cccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCC---CccchHHHHHHhHHHHHHHhccCCc
Confidence 268999999999999999999999988765 88887766655322111 12233333322 123333433356
Q ss_pred EEEEcCchHHHHHHHHHHHHh
Q psy8246 486 VYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 486 ~~yiCGPp~m~~~v~~~L~~l 506 (527)
.+|+|||++|+++++++|.++
T Consensus 356 ~vyvCGP~~M~~~v~~~L~~~ 376 (402)
T 2b5o_A 356 HVYMCGLKGMQPPIDETFTAE 376 (402)
T ss_dssp EEEEEECGGGHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHH
Confidence 788999999999999999987
No 23
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.97 E-value=6.7e-31 Score=266.31 Aligned_cols=227 Identities=18% Similarity=0.183 Sum_probs=171.7
Q ss_pred ceEEEEEEEEEEecC-----CEEEEEEEeCCCcCcccCCccEEEEEEEeC---Ce-eeeeeeeccCCCCCCCCCCCCEEE
Q psy8246 275 KFNTMRLLHQEQVTH-----NVVLITLEYTSPMFFYVPVGHHVFIKFIVN---DV-DISKPYTPVEPLQAAPLSYSNTLT 345 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~-----d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~---g~-~~~R~YT~~s~~~~~~~~~~~~l~ 345 (527)
....++|++++.+++ +++.|+|+.+... +.|+|||||.|+++.. |. ...|+|||++.+..+ ..+.+.++
T Consensus 20 ~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~-~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~-~~~~~~l~ 97 (304)
T 2bmw_A 20 APFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN-LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGD-DVDDKTIS 97 (304)
T ss_dssp BCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC-CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTT-TTSSSEEE
T ss_pred CCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc-cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCccc-CCCCCEEE
Confidence 356799999999999 8999999987542 4699999999987642 33 467999999976210 00368999
Q ss_pred EEEEE--e--------CCCCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC---
Q psy8246 346 FLIKS--Y--------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ--- 412 (527)
Q Consensus 346 l~IK~--y--------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~--- 412 (527)
|+||+ | ..|.+|+||+++++||.|.|.||+|.|...+....++++|||||||||||++++++++...
T Consensus 98 l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 177 (304)
T 2bmw_A 98 LCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERA 177 (304)
T ss_dssp EEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHH
T ss_pred EEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhh
Confidence 99998 3 2588999999999999999999999965333234689999999999999999999987532
Q ss_pred -------CCcEEEEEEeCCCchhhhHHHHHHHHhcCC-CCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcC
Q psy8246 413 -------RQSVQLVFFNRTEQDIIWRDQLDTFASKNS-KPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNS 482 (527)
Q Consensus 413 -------~~~v~L~~~~r~~~di~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~ 482 (527)
..+++|+|++|+.+|++|++||++++++++ +|+++...+++.....+. .+.+++.+.. ..+.+++..
T Consensus 178 ~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~v~~~l~~~~~~l~~~~~~ 254 (304)
T 2bmw_A 178 ANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGG---RMYIQDRVAEHADQLWQLIKN 254 (304)
T ss_dssp HCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSS---BCCHHHHHHHTHHHHHHHHTS
T ss_pred cccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCC---cceehHHHHHhHHHHHHHhhc
Confidence 257999999999999999999999987764 888877666653211111 1223333321 223333333
Q ss_pred CCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 483 NSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 483 ~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
....+|+|||++|+++++++|.++
T Consensus 255 ~~~~vyvCGp~~m~~~v~~~l~~~ 278 (304)
T 2bmw_A 255 QKTHTYICGPPPMEEGIDAALSAA 278 (304)
T ss_dssp TTEEEEEEECTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHH
Confidence 456788999999999999999876
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.97 E-value=1.7e-30 Score=264.51 Aligned_cols=226 Identities=18% Similarity=0.202 Sum_probs=171.0
Q ss_pred ceEEEEEEEEEEecCC--------------EEEEEEEeCCCcCcccCCccEEEEEEEeC---Ce--------eeeeeeec
Q psy8246 275 KFNTMRLLHQEQVTHN--------------VVLITLEYTSPMFFYVPVGHHVFIKFIVN---DV--------DISKPYTP 329 (527)
Q Consensus 275 ~~~~~~v~~~~~vs~d--------------~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~---g~--------~~~R~YT~ 329 (527)
....++|++++.++++ ++.|+|..+.. .+.|.|||||.|+++.. |. ...|+|||
T Consensus 20 ~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~-~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi 98 (314)
T 2rc5_A 20 NPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS-AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSI 98 (314)
T ss_dssp BCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT-TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEEC
T ss_pred CCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC-cCcccCCCEEEEECCCCccccCccchhhcCCCceeeec
Confidence 4567999999999998 99999998753 34699999999987642 22 36799999
Q ss_pred cCCCCCCCCCCCCEEEEEEEEe----------CCCCchHhhhcCCCCCEEEEeccccccccCCC-CCCccEEEEEecCCc
Q psy8246 330 VEPLQAAPLSYSNTLTFLIKSY----------EDGLLSPLLCGLREGQELEVSSPEGKFDVGLI-GKRNKLVLLAAGTGL 398 (527)
Q Consensus 330 ~s~~~~~~~~~~~~l~l~IK~y----------~~G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~-~~~~~ivlIAgGtGI 398 (527)
++.+... ..+.+.++|+||++ ++|.+|+||+++++||.|.|.||+|.|...+. ...++++||||||||
T Consensus 99 ~s~p~~~-~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGI 177 (314)
T 2rc5_A 99 ASPSYSF-GMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGI 177 (314)
T ss_dssp CSCTTCG-GGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGG
T ss_pred cCCcccc-CCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCCCCCCCEEEEECCccH
Confidence 9976200 00367999999996 35889999999999999999999999754331 246899999999999
Q ss_pred hhHHHHHHHHHHhC----CCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEeccCCCCCCcc-cccccccchhhhhhch
Q psy8246 399 TPMIPVINWSIQSQ----RQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPL-KNIISFLMRIRTTLKR 473 (527)
Q Consensus 399 tP~l~ll~~l~~~~----~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~-~g~~~~~~ri~~~~~~ 473 (527)
|||++|++++.... ..+++|+|++|+.+|++|+++|++++++.++++++...+++.... .+ ..+++++.+..
T Consensus 178 aP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g---~~~~v~~~l~~ 254 (314)
T 2rc5_A 178 APFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDG---GRMYISHRVRE 254 (314)
T ss_dssp HHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTS---SBCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCC---CceehhHHHHH
Confidence 99999999998653 368999999999999999999999987656888877666553211 11 12233333322
Q ss_pred --hHHHhhhcCCCcEEEEc-CchHHHHHHHHHHHHh
Q psy8246 474 --VELEDLLNSNSLVYSQL-NLPYAVAAVADKMTGM 506 (527)
Q Consensus 474 --~~l~~l~~~~~~~~yiC-GPp~m~~~v~~~L~~l 506 (527)
..+.+.+...... |+| ||++|++++++.|.++
T Consensus 255 ~~~~l~~~~~~~~~~-yvCGGp~~m~~~v~~~L~~~ 289 (314)
T 2rc5_A 255 QAEAVKKILNGGGRF-YICGGPKGMEKGVIEEIQKI 289 (314)
T ss_dssp THHHHHHHHHHTCEE-EEEESSTTTHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCeE-EEeCCcHHHHHHHHHHHHHH
Confidence 1232223222344 899 9999999999999887
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.95 E-value=3.9e-27 Score=232.57 Aligned_cols=204 Identities=12% Similarity=0.018 Sum_probs=154.5
Q ss_pred CceEEEEEEEEEEecCCEEEEEEEeCCCcCc-ccCCccEEEEEEEe-CCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe
Q psy8246 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFF-YVPVGHHVFIKFIV-NDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY 351 (527)
Q Consensus 274 ~~~~~~~v~~~~~vs~d~~~~~~~~p~~~~~-~~~pGQ~v~l~~~~-~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y 351 (527)
..|+.++|++++.+++++++|+|+.++...+ .+.|||||.|+++. .+....|+||+++.+ . +.++|.|+++
T Consensus 6 ~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~------~-~~~~i~~~~~ 78 (252)
T 2gpj_A 6 PAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQR------D-DEIDVDFVLH 78 (252)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEE------T-TEEEEEEECC
T ss_pred CCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccC------C-CEEEEEEEEe
Confidence 3578899999999999999999998765444 38999999999985 355789999999864 4 7899999987
Q ss_pred CC-CCchHhhhcCCCCCEEEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhh
Q psy8246 352 ED-GLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIW 430 (527)
Q Consensus 352 ~~-G~~S~~L~~l~~Gd~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~ 430 (527)
.+ |.+|+||+++++||+|.|.||.|.|.+.. ..++++|||||||||||++|++++.. . .++++++.+++.+|+..
T Consensus 79 ~~~G~~S~~l~~l~~Gd~l~v~gP~G~f~l~~--~~~~~lliagGtGitPi~s~l~~l~~-~-~~~~~~~~~~~~~d~~~ 154 (252)
T 2gpj_A 79 DTDGPASSWAKTAQVGELIQIGGPGLKKLINF--EADWFLLAGDMTALPAISVNLAKLPN-N-AVGYAVIEVLSEADIQP 154 (252)
T ss_dssp SSCCHHHHHHHHCCTTCEEEEEEEECCCCCCS--SSSEEEEEEEGGGHHHHHHHHHHSCT-T-CEEEEEEEESSGGGCCC
T ss_pred CCCCcHHHHHhhCCCCCEEEEecCCCCCcCCC--CCceEEEEcchhhHHHHHHHHHhCCC-C-CcEEEEEEECCHHHhhc
Confidence 66 89999999999999999999999998865 35789999999999999999999843 2 57888999999888753
Q ss_pred HHHHHHHHhcCCCCeEeccCCCCCCcccccccccchhhhhhchhHHHhhh-cCCCcEEEEcCchHHHHHHHHHHH-Hh
Q psy8246 431 RDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-NSNSLVYSQLNLPYAVAAVADKMT-GM 506 (527)
Q Consensus 431 ~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~~~l~~l~-~~~~~~~yiCGPp~m~~~v~~~L~-~l 506 (527)
. . ..++++++...+..... .++ ...+.+.++. ......+|+|||++||+++++.|+ ++
T Consensus 155 l------~-~~~~~~v~~~~~~~~~~-------~g~----~~~~~l~~~~~~~~~~~vy~CGP~~m~~av~~~l~~~~ 214 (252)
T 2gpj_A 155 L------V-HPEHVELHWVINPEADP-------EGR----PLVERIAQLPWLAGEPAVWIACEFNSMRALRRHFKQAH 214 (252)
T ss_dssp C------C-CCTEEEEEEEECSSCCT-------TCH----HHHHHHTTSCCCSSCEEEEEEEEHHHHHHHHHHHHHHC
T ss_pred c------c-CCCCcEEEEEeCCCCCc-------ccH----HHHHHHHhccCCCCCcEEEEEcCHHHHHHHHHHHHHhc
Confidence 2 1 23355554333222100 011 0111222221 123467889999999999999998 54
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.93 E-value=2.9e-26 Score=238.67 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=148.7
Q ss_pred ccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe--------CCCCchHhhhc-CCCCCEEEEec-c
Q psy8246 305 YVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY--------EDGLLSPLLCG-LREGQELEVSS-P 374 (527)
Q Consensus 305 ~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y--------~~G~~S~~L~~-l~~Gd~v~i~G-P 374 (527)
.+++|||+.+..+ ...|+|||+|.+.. ..+.++|+||++ .+|.+|+||++ +++||.|.|.| |
T Consensus 145 ~~~~Gq~v~l~~~----~~~R~YSIaSsp~~----~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~ 216 (374)
T 1ddg_A 145 QLDAEALINLLRP----LTPRLYSIASSQAE----VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEH 216 (374)
T ss_dssp CCCHHHHHHHSCB----CCCEEEEBCCCTTT----SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEEC
T ss_pred CCCHHHHHhhccC----CCCccceecCCCCC----CCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEee
Confidence 4899999998654 47899999998631 368999999997 57999999999 99999999998 5
Q ss_pred ccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCC
Q psy8246 375 EGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPST 452 (527)
Q Consensus 375 ~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~ 452 (527)
.|.|.++. +..++++|||||||||||+++++++.... ..+++|+|++|+. +|++|++||+++++....++++...++
T Consensus 217 ~g~F~lp~-~~~~piimIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr 295 (374)
T 1ddg_A 217 NDNFRLPA-NPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSR 295 (374)
T ss_dssp CTTSCCCS-STTSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETT
T ss_pred CCCccCCC-CCCCCEEEEECCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEEec
Confidence 66898865 35689999999999999999999998876 6799999999997 799999999999887767788777777
Q ss_pred CCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcC-chHHHHHHHHHHHHh
Q psy8246 453 EIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLN-LPYAVAAVADKMTGM 506 (527)
Q Consensus 453 ~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCG-Pp~m~~~v~~~L~~l 506 (527)
+... + +++++.+.. ..+.++++. ...+|||| |++|+++|.++|.++
T Consensus 296 d~~~-k------~yVq~~l~~~~~~l~~~l~~-~~~vYvCG~p~~M~~~V~~~L~~i 344 (374)
T 1ddg_A 296 DQKE-K------VYVQDKLREQGAELWRWIND-GAHIYVCGDANRMAKDVEQALLEV 344 (374)
T ss_dssp SSSS-C------CCHHHHHHHTHHHHHHHHHT-TCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCC-C------ccHHHHHHHhHHHHHHHHhC-CcEEEEECCCHHHHHHHHHHHHHH
Confidence 5421 1 223333321 234445443 46788999 999999999999988
No 27
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.90 E-value=1e-24 Score=178.95 Aligned_cols=80 Identities=60% Similarity=1.240 Sum_probs=76.0
Q ss_pred CCcc-cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCC
Q psy8246 46 GRIL-VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGS 124 (527)
Q Consensus 46 ~~~~-~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~ 124 (527)
++++ ||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|+.+||+.+++++|++|+||+|+.
T Consensus 3 ~~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l~~ 82 (88)
T 3lf5_A 3 GRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAI 82 (88)
T ss_dssp CSSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEECC
T ss_pred CCCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEeCC
Confidence 4566 999999999999999999999999999999999999999999999999999999999988988999999999976
Q ss_pred C
Q psy8246 125 S 125 (527)
Q Consensus 125 ~ 125 (527)
+
T Consensus 83 ~ 83 (88)
T 3lf5_A 83 K 83 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 28
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.89 E-value=6.1e-23 Score=217.70 Aligned_cols=177 Identities=15% Similarity=0.115 Sum_probs=134.1
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe----C-------CCCchHhhhcCCCCCEEEEec-cccccccCCCCCCccE
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY----E-------DGLLSPLLCGLREGQELEVSS-PEGKFDVGLIGKRNKL 389 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y----~-------~G~~S~~L~~l~~Gd~v~i~G-P~G~f~~~~~~~~~~i 389 (527)
...|+|||+|.+.. ..+.++|+|+++ + .|.+|+||+++++||.|.|.| |.|.|.+.. +..+++
T Consensus 208 l~~R~YSIsSsp~~----~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~-~~~~pi 282 (435)
T 1f20_A 208 LQPRYYSISSSPDM----YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR-NPQVPC 282 (435)
T ss_dssp CCCEEEECCSCTTT----STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCS-CTTSCE
T ss_pred CCCccccccCCccc----CCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCC-CCCCCE
Confidence 46899999998631 257899999864 2 278999999999999999999 677998865 356899
Q ss_pred EEEEecCCchhHHHHHHHHHHh-----C-CCcEEEEEEeCCCc-hhhhHHHHHHHHhcCCCCeEeccCCCCCCccccccc
Q psy8246 390 VLLAAGTGLTPMIPVINWSIQS-----Q-RQSVQLVFFNRTEQ-DIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIIS 462 (527)
Q Consensus 390 vlIAgGtGItP~l~ll~~l~~~-----~-~~~v~L~~~~r~~~-di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~ 462 (527)
+|||||||||||++|+++++.. . ..+++|+|++|+.+ |++|++||+++.+....++++...+++....+++
T Consensus 283 ilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~~k~y-- 360 (435)
T 1f20_A 283 ILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKY-- 360 (435)
T ss_dssp EEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCC--
T ss_pred EEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCCCCcc--
Confidence 9999999999999999998763 2 57899999999997 8999999999987766667777777664221221
Q ss_pred ccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 463 FLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 463 ~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
...++...+.. .+.+++......+|||||++|+++|.++|.++
T Consensus 361 Vq~~l~~~l~~-~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i 403 (435)
T 1f20_A 361 VQDVLQEQLAE-SVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 403 (435)
T ss_dssp HHHHHHHHSHH-HHHHHHHTSCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhHH-HHHHHHhcCCcEEEEeCChhHHHHHHHHHHHH
Confidence 12222221111 22223322346788999999999999999988
No 29
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.89 E-value=5.4e-24 Score=176.19 Aligned_cols=81 Identities=32% Similarity=0.604 Sum_probs=75.4
Q ss_pred Ccc-cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCC
Q psy8246 47 RIL-VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSS 125 (527)
Q Consensus 47 ~~~-~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~ 125 (527)
..+ ||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++|+.++++||++|+||+|.++
T Consensus 8 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~ 87 (92)
T 3ner_A 8 SVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 87 (92)
T ss_dssp CSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECGG
T ss_pred CCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEEChH
Confidence 345 9999999999999999999999999999999999999999999999999999998788889899999999999876
Q ss_pred CC
Q psy8246 126 LP 127 (527)
Q Consensus 126 ~~ 127 (527)
+.
T Consensus 88 ~~ 89 (92)
T 3ner_A 88 DL 89 (92)
T ss_dssp GS
T ss_pred hc
Confidence 53
No 30
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.88 E-value=2.2e-22 Score=210.54 Aligned_cols=184 Identities=15% Similarity=0.238 Sum_probs=140.1
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCC----------CCchHhhhcCCCCCEEE--Eec
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYED----------GLLSPLLCGLREGQELE--VSS 373 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~----------G~~S~~L~~l~~Gd~v~--i~G 373 (527)
++++|++.+ ++ ....|+|||+|++.. ..+.++|+|++++. |.+|+||+++++||.|. |+|
T Consensus 157 ~p~~~~l~~-lp---~l~~R~YSIsSsp~~----~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~ 228 (393)
T 4dql_A 157 MKFSEFIAL-LP---SIRPRYYSISSSPRV----DEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFIST 228 (393)
T ss_dssp CCHHHHHHT-SC---BCCCEEEECCSCTTT----CTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEEC
T ss_pred CCHHHHHHh-CC---CCcceeeeccccccc----cCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEc
Confidence 677887665 22 357899999998731 35889999998732 88999999999999998 779
Q ss_pred cccccccCCCCCCccEEEEEecCCchhHHHHHHHHH---HhC--CCcEEEEEEeCC-CchhhhHHHHHHHHhcCCCCeEe
Q psy8246 374 PEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSI---QSQ--RQSVQLVFFNRT-EQDIIWRDQLDTFASKNSKPSSP 447 (527)
Q Consensus 374 P~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~---~~~--~~~v~L~~~~r~-~~di~~~~eL~~l~~~~~~~~~~ 447 (527)
|+|.|.++. +..++++|||||||||||++++++.. ..+ ..+++|+|++|+ .+|++|++||+++.+. ++++++
T Consensus 229 P~g~F~lp~-~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l~l~ 306 (393)
T 4dql_A 229 PQSEFTLPK-DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GIITLH 306 (393)
T ss_dssp CSSCCCCCS-STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSCEEE
T ss_pred CCCCcccCc-cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCeEEE
Confidence 999999865 35679999999999999999999853 222 358999999999 6899999999999865 678888
Q ss_pred ccCCCCCCcccccccccchhhhhhc--hhHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 448 RNPSTEIKPLKNIISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 448 ~~~s~~~~~~~g~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
...+++....++ ++++.+. ...+.+++.. ...+|||||. .|.++|+++|.++
T Consensus 307 ~a~Sr~~~~~k~------yVq~~l~~~~~~l~~~l~~-~~~vYvCGp~~~M~~~V~~~L~~i 361 (393)
T 4dql_A 307 TAFSRMPNQPKT------YVQHVMEQDGKKLIELLDQ-GAHFYICGDGSQMAPAVEATLMKS 361 (393)
T ss_dssp EEESSCTTSCCC------CHHHHHHHTHHHHHHHHHT-TCEEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCc------chhhHHHhCHHHHHHHHhC-CcEEEEECCchhhHHHHHHHHHHH
Confidence 877774432222 2333322 2234444443 4677899995 6778999999987
No 31
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.88 E-value=1.1e-23 Score=174.82 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=73.9
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSLP 127 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~~ 127 (527)
||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.+||+..++++|++|+||+|.+.+.
T Consensus 7 ~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~~~~ 84 (93)
T 1cyo_A 7 YTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR 84 (93)
T ss_dssp ECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECGGGG
T ss_pred cCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEecCccc
Confidence 999999999999999999999999999999999999999999999999999999888888889999999999976543
No 32
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.88 E-value=2.3e-23 Score=176.08 Aligned_cols=78 Identities=28% Similarity=0.524 Sum_probs=74.2
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSLP 127 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~~ 127 (527)
||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.+||+.+++++|++|+||+|.+.+.
T Consensus 11 ~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~ 88 (104)
T 1hko_A 11 YTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR 88 (104)
T ss_dssp ECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEECTTSS
T ss_pred cCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEECCccc
Confidence 999999999999999999999999999999999999999999999999999999888888989999999999986543
No 33
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.88 E-value=2.5e-23 Score=171.30 Aligned_cols=77 Identities=34% Similarity=0.605 Sum_probs=73.2
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSL 126 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~ 126 (527)
||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.+||+.+++++|++|+||+|.+++
T Consensus 9 ~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~~~ 85 (88)
T 2ibj_A 9 FTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEE 85 (88)
T ss_dssp ECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEEECGGG
T ss_pred cCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEEeCccc
Confidence 99999999999999999999999999999999999999999999999999999987888888999999999997654
No 34
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.87 E-value=2.4e-22 Score=217.82 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=132.7
Q ss_pred eeeeeeeccCCCCCCCCCCCCEEEEEEEEe-----------CCCCchHhhhcC-----------CCCC-------EEEEe
Q psy8246 322 DISKPYTPVEPLQAAPLSYSNTLTFLIKSY-----------EDGLLSPLLCGL-----------REGQ-------ELEVS 372 (527)
Q Consensus 322 ~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y-----------~~G~~S~~L~~l-----------~~Gd-------~v~i~ 372 (527)
...|+|||+|.+.. +.+.++|+||++ ..|.+|+||+++ ++|| .|.|.
T Consensus 289 l~~R~YSIsSsp~~----~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~ 364 (539)
T 2qtl_A 289 LQPRPYSCASSSLF----HPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIF 364 (539)
T ss_dssp CCCEEEECCSCTTT----STTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEE
T ss_pred CcceEEeecCCccC----CCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEE
Confidence 47899999998621 368999999987 458899999996 9999 99999
Q ss_pred cccc-ccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh-------CCCcEEEEEEeCCC-chhhhHHHHHHHHhcCCC
Q psy8246 373 SPEG-KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS-------QRQSVQLVFFNRTE-QDIIWRDQLDTFASKNSK 443 (527)
Q Consensus 373 GP~G-~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~-------~~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~ 443 (527)
+|.| .|.+.. +...+++|||||||||||++|+++.... ...+++|||++|+. +|++|++||+++++....
T Consensus 365 ~p~g~~F~Lp~-~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~ 443 (539)
T 2qtl_A 365 PRTTNSFHLPD-DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL 443 (539)
T ss_dssp ECSCCCCCCCS-STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS
T ss_pred eeeCCCccCCc-cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC
Confidence 9986 798865 3568999999999999999999985431 14789999999999 799999999999987777
Q ss_pred CeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 444 PSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 444 ~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
++++...+++.... +.....+++++.+.. ..+.+++......+|||||+ +|+++|.++|.++
T Consensus 444 ~~l~~afSRd~~~~-~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~i 508 (539)
T 2qtl_A 444 THLKVSFSRDAPVG-EEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQI 508 (539)
T ss_dssp CEEEEEESSSCC-------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccCCCcc-ccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 88887777764210 000112344443332 23334442234678899997 9999999999988
No 35
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.87 E-value=9.7e-22 Score=219.27 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=133.5
Q ss_pred eeeeeeccCCCCCCCCCCCCEEEEEEEEe----C-------CCCchHhhhcCCCCCEEEEec-cccccccCCCCCCccEE
Q psy8246 323 ISKPYTPVEPLQAAPLSYSNTLTFLIKSY----E-------DGLLSPLLCGLREGQELEVSS-PEGKFDVGLIGKRNKLV 390 (527)
Q Consensus 323 ~~R~YT~~s~~~~~~~~~~~~l~l~IK~y----~-------~G~~S~~L~~l~~Gd~v~i~G-P~G~f~~~~~~~~~~iv 390 (527)
..|+|||+|.+.. ..+.++|+|+++ + .|.+|+||+++++||.|.|.+ |.|.|.+.. +..++++
T Consensus 430 ~~R~YSIsSsp~~----~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~-~~~~piI 504 (688)
T 1tll_A 430 QPRYYSISSSPDM----YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR-NPQVPCI 504 (688)
T ss_dssp CCEEEEBCSCTTT----STTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCS-CTTSCEE
T ss_pred ceeEEeecCCccc----CCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCc-CCCCCEE
Confidence 5799999998631 257899999864 2 278999999999999999999 677898865 3468999
Q ss_pred EEEecCCchhHHHHHHHHHHh-----C-CCcEEEEEEeCCCc-hhhhHHHHHHHHhcCCCCeEeccCCCCCCcccccccc
Q psy8246 391 LLAAGTGLTPMIPVINWSIQS-----Q-RQSVQLVFFNRTEQ-DIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISF 463 (527)
Q Consensus 391 lIAgGtGItP~l~ll~~l~~~-----~-~~~v~L~~~~r~~~-di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g~~~~ 463 (527)
|||||||||||++|+++++.. . ..+++|+|++|+.+ |++|++||+++.+....++++...+++....+++ .
T Consensus 505 lIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~y--V 582 (688)
T 1tll_A 505 LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKY--V 582 (688)
T ss_dssp EEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCC--H
T ss_pred EEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccc--h
Confidence 999999999999999998874 2 57899999999997 8999999999987766677777777664221121 2
Q ss_pred cchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 464 LMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 464 ~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
..++...+.. .+..++......+|||||++|+++|.+.|.++
T Consensus 583 q~~l~~~l~~-~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 583 QDVLQEQLAE-SVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp HHHHHHSSHH-HHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHH-HHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 2222221111 22222322346788999999999999999886
No 36
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.87 E-value=5.9e-23 Score=166.73 Aligned_cols=73 Identities=30% Similarity=0.524 Sum_probs=70.9
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchh--hhccC--CchhHHHhhhcCeeeEeC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATEL--FNKVH--PWVNYESILQKCIVGKMG 123 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~--f~~~h--~~~~~~~~l~~~~vG~l~ 123 (527)
||++||++|++.++|||+|+|+|||||+|+..|||| +.|+.++|+|+|+. |+.+| |+..++++|++|+||+|.
T Consensus 6 ~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~l~ 82 (82)
T 1x3x_A 6 YTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGKVK 82 (82)
T ss_dssp ECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEEEC
T ss_pred cCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceEeC
Confidence 999999999999999999999999999999999999 99999999999999 99999 999999999999999984
No 37
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.87 E-value=1.6e-21 Score=207.19 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=134.0
Q ss_pred CeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe---------CCCCchHhhhcCCCCC------EEEEeccccccccCCCC
Q psy8246 320 DVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQ------ELEVSSPEGKFDVGLIG 384 (527)
Q Consensus 320 g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y---------~~G~~S~~L~~l~~Gd------~v~i~GP~G~f~~~~~~ 384 (527)
+....|+|||+|++.. ..+.++|+|++. ..|.+|+||+++.+|+ .|.|.+|.|.|.++. +
T Consensus 230 p~l~pR~YSIsSsp~~----~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~-~ 304 (458)
T 3qfs_A 230 PRLQARYYSIASSSKV----HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPF-K 304 (458)
T ss_dssp CBCCCEEEECCSCTTT----CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCS-S
T ss_pred CCCcceeEeeccCccc----CCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCC-C
Confidence 3467899999998731 368899988652 3588999999977765 699999999999865 3
Q ss_pred CCccEEEEEecCCchhHHHHHHHHH---HhC--CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCccc
Q psy8246 385 KRNKLVLLAAGTGLTPMIPVINWSI---QSQ--RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLK 458 (527)
Q Consensus 385 ~~~~ivlIAgGtGItP~l~ll~~l~---~~~--~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~ 458 (527)
...+++|||||||||||++|+++.. ..+ ..+++|||++|+. +|++|++||++|++....++++...+++.. .
T Consensus 305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~-~- 382 (458)
T 3qfs_A 305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-H- 382 (458)
T ss_dssp TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS-S-
T ss_pred CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCC-C-
Confidence 5689999999999999999999854 222 3689999999995 899999999999887655677777777642 1
Q ss_pred ccccccchhhhhhch--hHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 459 NIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 459 g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
.+++++.+.. ..+.+++. ....+|||||+ .|+++|+++|.++
T Consensus 383 -----k~yVqd~l~~~~~~l~~~l~-~~~~vYvCGp~~~M~~~V~~~L~~i 427 (458)
T 3qfs_A 383 -----KVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDVQNTFYDI 427 (458)
T ss_dssp -----CCCHHHHHHHTHHHHHHHHH-TTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred -----cccHhHHHHHhHHHHHHHhc-CCCEEEEECCCHHHHHHHHHHHHHH
Confidence 2333333322 33445553 35678899996 7999999999998
No 38
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.86 E-value=1.5e-22 Score=167.30 Aligned_cols=75 Identities=31% Similarity=0.542 Sum_probs=69.3
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhh----ccCCchhHHHhhhcCeeeEeCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFN----KVHPWVNYESILQKCIVGKMGS 124 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~----~~h~~~~~~~~l~~~~vG~l~~ 124 (527)
||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|+ ..+|+.+++++|++|+||+|++
T Consensus 10 ~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~IG~l~~ 88 (90)
T 1cxy_A 10 FTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGTLEE 88 (90)
T ss_dssp CCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEEEC--
T ss_pred cCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCceeEeCC
Confidence 99999999999999999999999999999999999999999999999999999 4566678888999999999964
No 39
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.85 E-value=2.2e-22 Score=163.23 Aligned_cols=72 Identities=29% Similarity=0.612 Sum_probs=66.2
Q ss_pred cCHHHHhcccCCCC-eEEEEcCEEEecccCcccccccccccccccccccchhhhc---cCCchhHHHhhhcCeeeEe
Q psy8246 50 VSKAQLAEHNKEDD-MWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNK---VHPWVNYESILQKCIVGKM 122 (527)
Q Consensus 50 ~t~~e~~~h~~~~~-~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~---~h~~~~~~~~l~~~~vG~l 122 (527)
||++||++|++.++ |||+|+|+|||||+|+..||||.+.|+.++|+| |+.|++ .||+..+++||++|+||+|
T Consensus 7 ~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~IG~l 82 (82)
T 1mj4_A 7 YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKIGEL 82 (82)
T ss_dssp CCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEEEEC
T ss_pred cCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCcceeC
Confidence 99999999999998 999999999999999999999988899999999 678886 5688899999999999986
No 40
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.85 E-value=3.7e-21 Score=212.24 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=132.3
Q ss_pred eeeeeeeeccCCCCCCCCCCCCEEEEEEEE--e-------CCCCchHhhhcCCC-CC-----EEEEeccccccccCCCCC
Q psy8246 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKS--Y-------EDGLLSPLLCGLRE-GQ-----ELEVSSPEGKFDVGLIGK 385 (527)
Q Consensus 321 ~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~--y-------~~G~~S~~L~~l~~-Gd-----~v~i~GP~G~f~~~~~~~ 385 (527)
....|+|||+|++.. ..+.++|+|++ | ..|.+|+||+++.+ || .|.|.+|.|.|.++. +.
T Consensus 391 ~l~pR~YSIsSsp~~----~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~F~lp~-~~ 465 (618)
T 3qe2_A 391 RLQARYYSIASSSKV----HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPF-KA 465 (618)
T ss_dssp BCCCEEEECCSCTTT----CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCSCCCCS-ST
T ss_pred ccccceeccccCCcC----CCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCcccCCC-CC
Confidence 457899999998731 35778887754 2 34889999999877 88 999999999999865 35
Q ss_pred CccEEEEEecCCchhHHHHHHHHHHh---C--CCcEEEEEEeCCC-chhhhHHHHHHHHhcCCCCeEeccCCCCCCcccc
Q psy8246 386 RNKLVLLAAGTGLTPMIPVINWSIQS---Q--RQSVQLVFFNRTE-QDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKN 459 (527)
Q Consensus 386 ~~~ivlIAgGtGItP~l~ll~~l~~~---~--~~~v~L~~~~r~~-~di~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~g 459 (527)
..+++|||||||||||++++++.+.. + ..+++|+|++|+. +|++|++||+++.+....++++...+++...
T Consensus 466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~--- 542 (618)
T 3qe2_A 466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSH--- 542 (618)
T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSS---
T ss_pred CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCC---
Confidence 67999999999999999999998743 1 3689999999998 6999999999998776556888777776521
Q ss_pred cccccchhhhhhc--hhHHHhhhcCCCcEEEEcCch-HHHHHHHHHHHHh
Q psy8246 460 IISFLMRIRTTLK--RVELEDLLNSNSLVYSQLNLP-YAVAAVADKMTGM 506 (527)
Q Consensus 460 ~~~~~~ri~~~~~--~~~l~~l~~~~~~~~yiCGPp-~m~~~v~~~L~~l 506 (527)
.+++++.+. ...+.+++. ....+|||||+ .|+++|.++|.++
T Consensus 543 ----k~yVqd~l~~~~~~l~~~l~-~~a~vYvCGp~~~M~~~V~~~L~~i 587 (618)
T 3qe2_A 543 ----KVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDVQNTFYDI 587 (618)
T ss_dssp ----CCCHHHHHHHTHHHHHHHHH-HTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHhHHHHHHHHh-CCcEEEEECCchHHHHHHHHHHHHH
Confidence 123333332 223444443 34678899997 9999999999998
No 41
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.84 E-value=3e-22 Score=223.26 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=140.7
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEe------------CCCCchHhhhcCCC--------
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSY------------EDGLLSPLLCGLRE-------- 365 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y------------~~G~~S~~L~~l~~-------- 365 (527)
-.|+||+...++ ....|+|||+|++.. ..+.++|+|++. ..|.+|+||+++++
T Consensus 414 ~~p~~~l~~~lp---~l~~R~YSIsSsp~~----~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~ 486 (682)
T 2bpo_A 414 TVPMQFLVESVP---QMTPRYYSISSSSLS----EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIA 486 (682)
T ss_dssp TSCHHHHHHHSC---BCCCEEEEBCSCTTT----CTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTT
T ss_pred CCCHHHHHHhCc---ccccccccccCCccc----CCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccc
Confidence 357887766554 357899999998731 357899987542 35889999998776
Q ss_pred ----CCEEEEecccccc--------------ccCCCCCCccEEEEEecCCchhHHHHHHHHHHhC-----------CCcE
Q psy8246 366 ----GQELEVSSPEGKF--------------DVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-----------RQSV 416 (527)
Q Consensus 366 ----Gd~v~i~GP~G~f--------------~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~-----------~~~v 416 (527)
|+.|.|.||+|.| .++. +...+++|||||||||||+++++++.... ..++
T Consensus 487 ~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~-~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~ 565 (682)
T 2bpo_A 487 ETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPS-NPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKH 565 (682)
T ss_dssp TSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCS-STTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCE
T ss_pred ccccccceeeccCcCcccCceEEEEEecCcccCCC-CCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCE
Confidence 9999999999997 2222 23579999999999999999999987532 3689
Q ss_pred EEEEEeCCCchhhhHHHHHHHHhc-CCCCeEeccCCCCCCcccccccccchhhhhhch--hHHHhhhcCCCcEEEEcCc-
Q psy8246 417 QLVFFNRTEQDIIWRDQLDTFASK-NSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKR--VELEDLLNSNSLVYSQLNL- 492 (527)
Q Consensus 417 ~L~~~~r~~~di~~~~eL~~l~~~-~~~~~~~~~~s~~~~~~~g~~~~~~ri~~~~~~--~~l~~l~~~~~~~~yiCGP- 492 (527)
+|||++|+.+|++|++||++++.+ ..+++++...+++..+. .+++++.+.. ..+.++++ ....+|||||
T Consensus 566 ~L~fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~------k~yVqd~l~e~~~~l~~~l~-~~~~vYvCGpa 638 (682)
T 2bpo_A 566 ILFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTK------KVYVQDKLKDYEDQVFEMIN-NGAFIYVCGDA 638 (682)
T ss_dssp EEEEEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTTSC------CCCHHHHHHHTHHHHHHHHT-TTCEEEEEECS
T ss_pred EEEEecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCCCC------CcchHHHHHhhHHHHHHHHh-CCcEEEEeCCc
Confidence 999999999999999999999644 46788888777743222 2334444432 34445554 3567889999
Q ss_pred hHHHHHHHHHHHHh
Q psy8246 493 PYAVAAVADKMTGM 506 (527)
Q Consensus 493 p~m~~~v~~~L~~l 506 (527)
++|+++|.++|.++
T Consensus 639 ~~M~~~V~~~L~~i 652 (682)
T 2bpo_A 639 KGMAKGVSTALVGI 652 (682)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHH
Confidence 79999999999998
No 42
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-22 Score=172.81 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=72.8
Q ss_pred cc-cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhhhcCeeeEeCCCC
Q psy8246 48 IL-VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESILQKCIVGKMGSSL 126 (527)
Q Consensus 48 ~~-~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l~~~~vG~l~~~~ 126 (527)
.+ ||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|+.++|+..++++|++|+||.|...+
T Consensus 23 ~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~e 102 (112)
T 2keo_A 23 VTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQYLEPD 102 (112)
T ss_dssp CCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEECCHH
T ss_pred CCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEeeCCcc
Confidence 34 99999999999999999999999999999999999999999999999999999975567778899999999997543
No 43
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.81 E-value=4.7e-20 Score=168.95 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=86.0
Q ss_pred CCCCCE-EEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHHhcC
Q psy8246 363 LREGQE-LEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441 (527)
Q Consensus 363 l~~Gd~-v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~~~ 441 (527)
|++||+ +.|+||+|+|.... ..++++|||||||||||++|++++.+.+ .+++|+ ++|+.+|++|++||++++.
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~--~~~~~llIaGG~GItPl~sm~~~l~~~~-~~v~l~-g~r~~~d~~~~~el~~l~~-- 74 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-NDVTTL-HVTFEPMVILKEELEKAVT-- 74 (158)
T ss_dssp -----------CCCCCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHHT-CEEEEE-EECBGGGCCSHHHHHHHSS--
T ss_pred CcCCCEeeEEECCCCCCCccC--CCCeEEEEEccCcHHHHHHHHHHHHhcC-CcEEEE-EeCCHHHhhHHHHHHHHHh--
Confidence 579999 69999999965433 4689999999999999999999998876 789999 9999999999999999864
Q ss_pred CCCeEeccCCCCCC-cccccccccchhhhhhchhHHHhhhcCCCcEEEEcCchHHHHHHHHHHHHh
Q psy8246 442 SKPSSPRNPSTEIK-PLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAVADKMTGM 506 (527)
Q Consensus 442 ~~~~~~~~~s~~~~-~~~g~~~~~~ri~~~~~~~~l~~l~~~~~~~~yiCGPp~m~~~v~~~L~~l 506 (527)
++.+....+.... ...+.....+++.+.+ ...+.+ .....+|+|||++|++++.+.|+++
T Consensus 75 -~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l-~~~l~~---~~~~~vy~CGP~~mm~~v~~~l~~~ 135 (158)
T 3lrx_A 75 -RHIVEPVPLNPNQDFLANMKNVSQRLKEKV-RELLES---EDWDLVFMVGPVGDQKQVFEVVKEY 135 (158)
T ss_dssp -EEEECCBCCCTTSCHHHHHHHHHHHHHHHH-HHHHHH---SCCSEEEEESCHHHHHHHHHHHGGG
T ss_pred -ceEEEEeeccccccCCCCCCCCcccccHHH-HHhhcc---CCCCEEEEECCHHHHHHHHHHHHHc
Confidence 3343322222110 0011112234444322 112222 1335688999999999999999875
No 44
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.76 E-value=9.4e-19 Score=157.39 Aligned_cols=131 Identities=17% Similarity=0.150 Sum_probs=89.5
Q ss_pred EEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHhCCCcEEEEEEeCCCchhhhHHHHHHHHhcCCCCeEec
Q psy8246 369 LEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPR 448 (527)
Q Consensus 369 v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~~~~~v~L~~~~r~~~di~~~~eL~~l~~~~~~~~~~~ 448 (527)
++|.||+|+|.... ..++++|||||+||||+++|++++.+.+ .+++|+ ++|+.+|+++++||++++.+ +.+..
T Consensus 3 ~~v~GP~G~~~~~~--~~~~~llIaGG~GiaPl~sm~~~l~~~~-~~v~l~-g~R~~~~~~~~~el~~l~~~---~~~~~ 75 (142)
T 3lyu_A 3 LNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-NDVTTL-HVTFEPMVILKEELEKAVTR---HIVEP 75 (142)
T ss_dssp ----CCCSCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHTT-CEEEEE-EEEEGGGCCSHHHHHTTSSE---EEEEE
T ss_pred eeeeCCCCCCccCC--CCCeEEEEECcCcHHHHHHHHHHHHhcC-CcEEEE-EeCCHHHhhHHHHHHHHHhh---eEEEE
Confidence 57899999976544 4689999999999999999999998876 789999 99999999999999988643 33332
Q ss_pred cCCCCCC-cccccccccchhhhhhchhHHHhhhc-CCCcEEEEcCchHHHHHHHHHHHHhhhhcC
Q psy8246 449 NPSTEIK-PLKNIISFLMRIRTTLKRVELEDLLN-SNSLVYSQLNLPYAVAAVADKMTGMENKMN 511 (527)
Q Consensus 449 ~~s~~~~-~~~g~~~~~~ri~~~~~~~~l~~l~~-~~~~~~yiCGPp~m~~~v~~~L~~l~~~m~ 511 (527)
..+.... ...+.....+++.+. +.+++. .....+|+|||++|++++.+.+++..-+|.
T Consensus 76 ~~~~~~~~~~d~~~g~~G~v~~~-----l~~~~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~~~~ 135 (142)
T 3lyu_A 76 VPLNPNQDFLANMKNVSQRLKEK-----VRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGVPML 135 (142)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHH-----HHHHHHSSCCSEEEEESCHHHHHHHHHHHHHHTCCBC
T ss_pred eecccccCCCCCCCCCccchhHH-----HHHhcccCCCCEEEEECCHHHHHHHHHHHHHcCCchh
Confidence 2222110 000111123444322 333322 234568899999999999999999865654
No 45
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=162.44 Aligned_cols=137 Identities=11% Similarity=0.091 Sum_probs=93.6
Q ss_pred EEEeccccccccCCCCCCccEEEEEecCCchhHHHHHHHHHHh--------CCCcEEEEEEeCCCchhh-hHHHHHHHHh
Q psy8246 369 LEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQS--------QRQSVQLVFFNRTEQDII-WRDQLDTFAS 439 (527)
Q Consensus 369 v~i~GP~G~f~~~~~~~~~~ivlIAgGtGItP~l~ll~~l~~~--------~~~~v~L~~~~r~~~di~-~~~eL~~l~~ 439 (527)
|.|.||+|.|.+.. ...++++|||||||||||++|+++++.. ...+|+|+|++|+.++++ |+++|+++++
T Consensus 1 v~v~GP~G~~~~~~-~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~ 79 (186)
T 3a1f_A 1 IAVDGPFGTASEDV-FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLES 79 (186)
T ss_dssp CCTTSTTSHHHHHH-TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CeEECCCCCCccCh-hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHH
Confidence 45789999987643 3578999999999999999999999875 157899999999999998 9999999987
Q ss_pred c------CCCCeEeccCCCCCCc---------------cccc--ccccchhhhh-hchhHHHhhhcCCCcEEEEcCchHH
Q psy8246 440 K------NSKPSSPRNPSTEIKP---------------LKNI--ISFLMRIRTT-LKRVELEDLLNSNSLVYSQLNLPYA 495 (527)
Q Consensus 440 ~------~~~~~~~~~~s~~~~~---------------~~g~--~~~~~ri~~~-~~~~~l~~l~~~~~~~~yiCGPp~m 495 (527)
+ ..+|+++...+++... ..+. ....+|++.. +.+....++ ......+|+|||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~-~~~~~~v~~CGP~~m 158 (186)
T 3a1f_A 80 QMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQH-PNTRIGVFLCGPEAL 158 (186)
T ss_dssp HHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHS-TTCEEEEEEESCHHH
T ss_pred HHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhC-CCCcEEEEEeCCHHH
Confidence 5 2367776555543110 0000 0001232211 111111111 112467889999999
Q ss_pred HHHHHHHHHHhh
Q psy8246 496 VAAVADKMTGME 507 (527)
Q Consensus 496 ~~~v~~~L~~l~ 507 (527)
++++++.|.++.
T Consensus 159 ~~~v~~~l~~~g 170 (186)
T 3a1f_A 159 AETLSKQSISNS 170 (186)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999998873
No 46
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.68 E-value=1.7e-17 Score=178.54 Aligned_cols=78 Identities=36% Similarity=0.691 Sum_probs=72.9
Q ss_pred cCHHHHhcccCCCCeEEEEcCEEEecccCcccccccccccccccccccchhhhccCCchhHHHhh-hcCeeeEeCCCCC
Q psy8246 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNYESIL-QKCIVGKMGSSLP 127 (527)
Q Consensus 50 ~t~~e~~~h~~~~~~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~h~~~~~~~~l-~~~~vG~l~~~~~ 127 (527)
||++||++||+.++|||+|+|+|||||+|+.+||||.++|+.++|+|+|+.|+.+|++..++++| ++|+||+|.+.+.
T Consensus 11 ~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~H~~~~~~~~l~~~~~iG~l~~~~~ 89 (511)
T 1kbi_A 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLGPLQGSMP 89 (511)
T ss_dssp BCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGGSCTTHHHHHSCGGGEEEEBCSCCC
T ss_pred cCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhcCCHHHHHHhhccccEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999987776655 7899999987654
No 47
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.67 E-value=3.4e-17 Score=173.50 Aligned_cols=77 Identities=25% Similarity=0.514 Sum_probs=71.9
Q ss_pred cCHHHHhcccCCCC-eEEEEcCEEEecccCcccccccccccccccccccchhhhc---cCCchhHHHhhhcCeeeEeCCC
Q psy8246 50 VSKAQLAEHNKEDD-MWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNK---VHPWVNYESILQKCIVGKMGSS 125 (527)
Q Consensus 50 ~t~~e~~~h~~~~~-~wvii~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~---~h~~~~~~~~l~~~~vG~l~~~ 125 (527)
||++||++|++.++ |||+|+|+|||||+|+..||||.+.|+.++|+| |+.|+. .||+..++++|++|+||.|.++
T Consensus 7 ~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG~l~~~ 85 (466)
T 1sox_A 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVGELSPD 85 (466)
T ss_dssp ECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEEEECCC
T ss_pred eCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceEEeccc
Confidence 99999999999999 999999999999999999999999999999999 999986 5678888899999999999876
Q ss_pred CC
Q psy8246 126 LP 127 (527)
Q Consensus 126 ~~ 127 (527)
+.
T Consensus 86 ~~ 87 (466)
T 1sox_A 86 EA 87 (466)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 48
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.50 E-value=1.1e-14 Score=122.23 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=51.4
Q ss_pred cCHHHHhcccCCC---CeEEEEcCEEEecccCcc-cccccccccccccccccchhhhccCCc
Q psy8246 50 VSKAQLAEHNKED---DMWMCIRGVVYNVTRYMD-FHPGGREELMRGAGMDATELFNKVHPW 107 (527)
Q Consensus 50 ~t~~e~~~h~~~~---~~wvii~g~VYDvt~f~~-~HPGG~~~l~~~aG~D~T~~f~~~h~~ 107 (527)
||++||++||+.+ +|||+|+|+|||||.|.. +||||. +..+||+|||+.|...+|+
T Consensus 5 ~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~~~ 64 (102)
T 1j03_A 5 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMSKN 64 (102)
T ss_dssp CCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTCCC
T ss_pred cCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcCCC
Confidence 9999999999876 799999999999999977 799997 4689999999999988775
No 49
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=96.88 E-value=0.0049 Score=53.90 Aligned_cols=84 Identities=12% Similarity=0.278 Sum_probs=61.2
Q ss_pred CccceEee-cCcEEEEEEecc-CCCceEEecCCCceEEEEEEcC-------------eeeee--eccCCcc-cceeEEEe
Q psy8246 170 YSMDWFQQ-LNFICFVFYLKS-SCPKVLITLNENNTDLSLLINE-------------RSLLL--HLEQPVK-WPCQVKIN 231 (527)
Q Consensus 170 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~l~~~~~-~~~~~~~~ 231 (527)
++++|+|+ .+.|+|.+|.+. .+..+.+++.++.+.+.+...+ ..|.| +|-+.|. +.+ ...
T Consensus 20 ~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S--~~~ 97 (134)
T 1wh0_A 20 VKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQC--TFC 97 (134)
T ss_dssp CCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEE--EEE
T ss_pred CCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhC--EEE
Confidence 78999999 999999999876 4566677888888877765432 13444 5777775 333 333
Q ss_pred eeeeEEEEEEcccccccccccCcc
Q psy8246 232 LNVGKLQLQLNKEEAKLWKHHSTK 255 (527)
Q Consensus 232 ~~~~~~~~~l~~~~~~~w~~~~~~ 255 (527)
....++++.|.|.+...|.++...
T Consensus 98 v~~~kIeI~L~K~e~~~W~~L~~~ 121 (134)
T 1wh0_A 98 FTASRIDICLRKRQSQRWGGLEAP 121 (134)
T ss_dssp ECSSEEEEEEEESSSCCCSCSBCC
T ss_pred EeCCEEEEEEEECCCCcccccccc
Confidence 344789999999888899987644
No 50
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=96.76 E-value=0.0051 Score=49.75 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=58.2
Q ss_pred CccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc-C--eeeeeeccCCcccceeEEEeeeeeEEEEEEcccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN-E--RSLLLHLEQPVKWPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
|+++|+|+.+.+++.++.+. .+..+.+++.++.+.+.+... + +...++|.+.|.... .......+++++.|.|.+
T Consensus 3 ~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~-s~~~~~~~~l~i~L~K~~ 81 (92)
T 2xcm_C 3 YRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK-CKYEVLSTKIEICLAKAD 81 (92)
T ss_dssp SEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGG-CEEEECSSCEEEEEEBSS
T ss_pred ccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchh-EEEEEECCEEEEEEEcCC
Confidence 68999999999999998766 456667788888877665432 2 333445777775331 233344578999999987
Q ss_pred cccccccC
Q psy8246 246 AKLWKHHS 253 (527)
Q Consensus 246 ~~~w~~~~ 253 (527)
...|.++.
T Consensus 82 ~~~W~~L~ 89 (92)
T 2xcm_C 82 IITWASLE 89 (92)
T ss_dssp SCCCSCSB
T ss_pred CCcchhcc
Confidence 77888653
No 51
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=96.30 E-value=0.014 Score=49.31 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=59.2
Q ss_pred CccceEeecCcEEEEEEecc-CCCceEEecCCCceEEEEEEc-Ceee--eeeccCCcccceeEEEeeeeeEEEEEEcccc
Q psy8246 170 YSMDWFQQLNFICFVFYLKS-SCPKVLITLNENNTDLSLLIN-ERSL--LLHLEQPVKWPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
|+++|+|+...|.|.++.+. .+..+.+.+.++.+.+.+... +..| .++|.+.|.... .......+++++.|.|.+
T Consensus 10 ~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~-s~~~~~~~~l~i~L~K~~ 88 (114)
T 1rl1_A 10 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ-STFKVLSTKIEIKLKKPE 88 (114)
T ss_dssp CCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGG-EEEEECSSSEEEEEECSS
T ss_pred CCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccc-cEEEEECCEEEEEEEcCC
Confidence 68999999999999999876 445667788888887776542 3333 445777775321 233444478999999988
Q ss_pred cccccccC
Q psy8246 246 AKLWKHHS 253 (527)
Q Consensus 246 ~~~w~~~~ 253 (527)
...|.++.
T Consensus 89 ~~~W~~L~ 96 (114)
T 1rl1_A 89 AVRWEKLE 96 (114)
T ss_dssp CCCCSSSB
T ss_pred CCcCcccc
Confidence 77898764
No 52
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.85 E-value=0.062 Score=46.28 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=59.0
Q ss_pred CCccceEeecCcEEEEEEecc----CCCceEEecCCCceEEEEEE-cC--eeeeee-ccCCcccc-eeEEEeeeeeEEEE
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS----SCPKVLITLNENNTDLSLLI-NE--RSLLLH-LEQPVKWP-CQVKINLNVGKLQL 239 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-l~~~~~~~-~~~~~~~~~~~~~~ 239 (527)
+++|+|+|+...|+|.++.+. .+..+.+++.+++|.+.+.. ++ +...++ |-+.|... +..++ ...++++
T Consensus 20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v--~~~kVei 97 (127)
T 1x5m_A 20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKV--KTDTVLI 97 (127)
T ss_dssp CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEE--ETTEEEE
T ss_pred ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEE--eCCEEEE
Confidence 478999999999999999875 24567778888887776542 23 333443 77777533 43343 4478999
Q ss_pred EEcccccc-cccccCc
Q psy8246 240 QLNKEEAK-LWKHHST 254 (527)
Q Consensus 240 ~l~~~~~~-~w~~~~~ 254 (527)
.|.|.+.. .|.++..
T Consensus 98 ~L~K~~~~~~W~~L~~ 113 (127)
T 1x5m_A 98 LCRKKVENTRWDYLTQ 113 (127)
T ss_dssp EEECSSSSCCCSSSBH
T ss_pred EEEECCCCCCCCcccc
Confidence 99998765 8987653
No 53
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=93.55 E-value=0.17 Score=44.97 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCccceEeecCcEEEEEEeccCCCceEEecC-CCceEEEEE-EcCeeee--eeccCCcccceeEEEeeeeeEEEEEEccc
Q psy8246 169 FYSMDWFQQLNFICFVFYLKSSCPKVLITLN-ENNTDLSLL-INERSLL--LHLEQPVKWPCQVKINLNVGKLQLQLNKE 244 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (527)
.|+++|+|+...|.|-++.+. ...+.+.+. ++++.+.+. ..+..|. ++|-+.|-..+..+ ....++++.|.|.
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~-~~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~IdpeS~~~--v~~~kIei~L~K~ 80 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPD-AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYRKN--VGLRNIIFSIQKE 80 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSS-EEEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEE--EESSSEEEEEEEC
T ss_pred CCcEEEEeCCCEEEEEEEeCC-CCceEEEEecCCEEEEEEEcCCCceEEEEeEhhhcccccceEE--ecCCEEEEEEEEC
Confidence 378999999999999888654 223445666 456666554 2233344 45777774223333 3446799999998
Q ss_pred ccccccccC
Q psy8246 245 EAKLWKHHS 253 (527)
Q Consensus 245 ~~~~w~~~~ 253 (527)
++..|.++.
T Consensus 81 e~~~W~rL~ 89 (150)
T 2kmw_A 81 ERSWWTRLL 89 (150)
T ss_dssp CSSCCSCSB
T ss_pred CCCcCcccc
Confidence 888898754
No 54
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=91.12 E-value=0.69 Score=39.84 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCccceEeecCcEEEEEEec-c-CCCceEEecCCCceEEEEEEcCee-eeeeccCCcccceeEEEeeeeeEEEEEEcccc
Q psy8246 169 FYSMDWFQQLNFICFVFYLK-S-SCPKVLITLNENNTDLSLLINERS-LLLHLEQPVKWPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
.|+|.|.|+...|.|.++.. . .+..+.+.+.++++.+.+ .|.. ....|-+.|.... .......+++++.|.|.+
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~--~g~~~~~~~L~~~I~~e~-S~w~i~~~kv~i~L~K~~ 80 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKN--QGEIVIDGELLHEVDVSS-LWWVINGDVVDVNVTKKR 80 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEE--TTEEEEEEEBSSCEEEEE-EEEEEETTEEEEEEEESS
T ss_pred CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEE--CCEeeEcccccccccccc-CEEEEeCCEEEEEEEECC
Confidence 47899999999999988863 3 455566677777765543 3332 1223666663211 233334467899999875
Q ss_pred cccccccC
Q psy8246 246 AKLWKHHS 253 (527)
Q Consensus 246 ~~~w~~~~ 253 (527)
..-|.++-
T Consensus 81 ~~~W~~L~ 88 (131)
T 2o30_A 81 NEWWDSLL 88 (131)
T ss_dssp CCCCSCSB
T ss_pred CCCCcccc
Confidence 56688753
No 55
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=90.32 E-value=0.93 Score=38.66 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=51.9
Q ss_pred ccceEeecCcEEEEEEeccCCCceEEecCCCceEEEEEE--cCeeee--eeccCCcc-cceeEEEeeeeeEEEEEEcccc
Q psy8246 171 SMDWFQQLNFICFVFYLKSSCPKVLITLNENNTDLSLLI--NERSLL--LHLEQPVK-WPCQVKINLNVGKLQLQLNKEE 245 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 245 (527)
+++|+|+...|.|.++.+. ...+.+.+.++++.+.+.. .+..|. ++|-+.|. +.+..+ ....++++.|.|.+
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~-~~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~--v~~~kiei~L~K~~ 81 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVED-SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK--RTDRSILCCLRKGE 81 (125)
T ss_dssp CEEEEECSSEEEEEECCTT-EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEE--ECSSCEEEEEEESS
T ss_pred ceeEEeCCCEEEEEEEecC-CCceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEE--ECCCEEEEEEEECC
Confidence 7999999999999888654 2334556677777666543 233343 45777774 223233 33367999999976
Q ss_pred c-ccccccC
Q psy8246 246 A-KLWKHHS 253 (527)
Q Consensus 246 ~-~~w~~~~ 253 (527)
+ ..|.++-
T Consensus 82 ~~~~W~rL~ 90 (125)
T 1ejf_A 82 SGQSWPRLT 90 (125)
T ss_dssp TTCCCSSSB
T ss_pred CCCCCCcee
Confidence 5 4888764
No 56
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=87.58 E-value=2.9 Score=35.41 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCccceEeecCcEEEEEEecc---CCCceEEecCCCceEEEEEE-cCeeeee--eccCCcccceeEEEeeeeeE-EEEEE
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS---SCPKVLITLNENNTDLSLLI-NERSLLL--HLEQPVKWPCQVKINLNVGK-LQLQL 241 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~~~~~~~-~~~~l 241 (527)
.|+|.|.|+...|.|.+.... .+..+.+.+.++++.+.+.. .+..+.+ +|-++|.... .......++ +++.|
T Consensus 19 ~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~-S~w~i~~~k~v~i~L 97 (124)
T 1wgv_A 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES-SLWSLEPGKCVLVNL 97 (124)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTT-CEEEECTTSEEEEEE
T ss_pred CCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcC-CEEEEeCCCEEEEEE
Confidence 478999999999999888653 23456677777777665432 1222223 3666664221 122333456 89999
Q ss_pred cccccccccccC
Q psy8246 242 NKEEAKLWKHHS 253 (527)
Q Consensus 242 ~~~~~~~w~~~~ 253 (527)
.|.+..-|.++-
T Consensus 98 ~K~~~~~W~~L~ 109 (124)
T 1wgv_A 98 SKVGEYWWNAIL 109 (124)
T ss_dssp CBSSSCCCSCSB
T ss_pred EECCCCCCcCcc
Confidence 998777888764
No 57
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=82.87 E-value=0.96 Score=39.13 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCccceEeecCc-------EEEEEEeccCCCceEEecCCCceEEEEEEcC-------eeee--eeccCCcc-cceeEEEe
Q psy8246 169 FYSMDWFQQLNF-------ICFVFYLKSSCPKVLITLNENNTDLSLLINE-------RSLL--LHLEQPVK-WPCQVKIN 231 (527)
Q Consensus 169 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~l~~~~~-~~~~~~~~ 231 (527)
.|+++|+|+.+. |.|.++.+. ...+.+.+.+++|.+.+...+ ..|. ++|-+.|- +.+ ...
T Consensus 6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~-~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S--~~~ 82 (134)
T 2cg9_X 6 NPQVAWAQRSSTTDPERNYVLITVSIAD-CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKT--MHK 82 (134)
T ss_dssp -----CBCCCEEECCCSSEEEEECCCSS-EESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSE--EEE
T ss_pred CCCEEEEeCCCCcCCcCCEEEEEEEecC-CCceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhcccccc--EEE
Confidence 378999999877 777666543 112233555666655544432 3344 44777763 223 333
Q ss_pred eeeeE-EEEEEcccc--cccccccC
Q psy8246 232 LNVGK-LQLQLNKEE--AKLWKHHS 253 (527)
Q Consensus 232 ~~~~~-~~~~l~~~~--~~~w~~~~ 253 (527)
....+ +++.|.|.+ ..-|.++-
T Consensus 83 v~~~~~vei~L~K~~~~~~~W~rL~ 107 (134)
T 2cg9_X 83 VANGQHYFLKLYKKDLESEYWPRLT 107 (134)
T ss_dssp ECCC--CEEEEEECSSSSCCCSCSS
T ss_pred ECCCEEEEEEEEECCCCCCCCCcee
Confidence 34456 899999977 46888764
No 58
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=79.40 E-value=6.2 Score=34.94 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCccceEeecCcEEEEEEecc--CCCceEEecCCCceEEEEEEcCeee-eeeccCCcccceeEEEeeeeeE-EEEEEccc
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS--SCPKVLITLNENNTDLSLLINERSL-LLHLEQPVKWPCQVKINLNVGK-LQLQLNKE 244 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 244 (527)
.|+|.|.|+...|.|.+.... .+..+.+.+.++++.+.+ .+..+ ..+|-++|.... .......++ +++.|.|.
T Consensus 13 ~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~--kg~~~l~g~L~~~I~~ee-S~w~i~~~k~v~I~L~K~ 89 (157)
T 2rh0_A 13 TPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV--GGREILKGKLFDSTIADE-GTWTLEDRKMVRIVLTKT 89 (157)
T ss_dssp CSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEE--TTEEEEEEEBSSCBCGGG-CEEEEECCCEEEEEEEBS
T ss_pred CCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEE--CCEEEEeeccccccCccc-cEEEEcCCcEEEEEEEEc
Confidence 478999999999999888643 344566677777765543 33322 223666663221 122333355 78899887
Q ss_pred cc---cccccc
Q psy8246 245 EA---KLWKHH 252 (527)
Q Consensus 245 ~~---~~w~~~ 252 (527)
+. .-|.++
T Consensus 90 ~~~~~~~W~~L 100 (157)
T 2rh0_A 90 KRDAANCWTSL 100 (157)
T ss_dssp SCSTTCCCSEE
T ss_pred CCCcCCcChhh
Confidence 64 567754
No 59
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=77.05 E-value=8.4 Score=32.36 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCccceEeecCcEEEEEEecc----CCCceEEecCCCceEEEEEEcCeee--eeeccCCcccceeEEEeeeee-EEEEEE
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS----SCPKVLITLNENNTDLSLLINERSL--LLHLEQPVKWPCQVKINLNVG-KLQLQL 241 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~-~~~~~l 241 (527)
.|+|.|.|+...|.|.+.... .+..+.+.+.++.+.+ -+.+..+ ..+|-++|.... .....+.+ .+++.|
T Consensus 16 ~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v--~~kg~~~~~~g~L~~~I~~de-S~w~i~~~~~i~i~L 92 (121)
T 3qor_A 16 LPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRV--GLKGQPAIIDGELYNEVKVEE-SSWLIADGAVVTVHL 92 (121)
T ss_dssp CSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEE--EETTSCCSEEEEBSSCBCGGG-CEEEEETTTEEEEEE
T ss_pred CCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEE--EEcCcceEEeccccccccccc-cEEEEcCCCEEEEEE
Confidence 478999999999999776532 2334555666665543 3333222 223666664221 12223334 688899
Q ss_pred ccccc-ccccccC
Q psy8246 242 NKEEA-KLWKHHS 253 (527)
Q Consensus 242 ~~~~~-~~w~~~~ 253 (527)
.|.+. .-|.++-
T Consensus 93 ~K~~~~~~W~~L~ 105 (121)
T 3qor_A 93 EKINKMEWWSRLV 105 (121)
T ss_dssp EBSSSSCCCSCSB
T ss_pred EECCCCCCChhhh
Confidence 88765 5788764
No 60
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=75.90 E-value=5.4 Score=34.04 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCccceEeecCcEEEEEEecc----CCCceEEecCCCceEEEEEEcCeeeee--eccCCcccceeEEEeeeee-EEEEEE
Q psy8246 169 FYSMDWFQQLNFICFVFYLKS----SCPKVLITLNENNTDLSLLINERSLLL--HLEQPVKWPCQVKINLNVG-KLQLQL 241 (527)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~-~~~~~l 241 (527)
.|+|.|.|+...+.|.+.... .+..+.+.+.++++.+.+ .+..+.+ +|-++|.... .......+ .+++.|
T Consensus 7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~--kg~~~~~~~~L~~~I~~e~-s~w~i~~~k~v~i~L 83 (131)
T 1wfi_A 7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGL--KGQPPVVDGELYNEVKVEE-SSWLIEDGKVVTVHL 83 (131)
T ss_dssp CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEE--TTSCCSBCSCBSSCBCSTT-CEEEEETTTEEEEEE
T ss_pred CCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEE--CCceEEEeccccccccccc-CEEEEcCCCEEEEEE
Confidence 378999999999999887542 244566677777765543 3322222 3556653211 12223334 388999
Q ss_pred ccccc-ccccccC
Q psy8246 242 NKEEA-KLWKHHS 253 (527)
Q Consensus 242 ~~~~~-~~w~~~~ 253 (527)
.|.+. .-|.++-
T Consensus 84 ~K~~~~~~W~~L~ 96 (131)
T 1wfi_A 84 EKINKMEWWNRLV 96 (131)
T ss_dssp EBSSSCCCCSCSB
T ss_pred EECCCCCCChhhh
Confidence 99765 5888764
No 61
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=60.58 E-value=5.5 Score=39.96 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.1
Q ss_pred ccEEEEEecCC--chhHHHHHHHHHHhCCCcEEEEEE
Q psy8246 387 NKLVLLAAGTG--LTPMIPVINWSIQSQRQSVQLVFF 421 (527)
Q Consensus 387 ~~ivlIAgGtG--ItP~l~ll~~l~~~~~~~v~L~~~ 421 (527)
+++++.||||| |.|.+++++++.+++ .+|.++-.
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g-~~V~~vg~ 38 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG-YAVHWLGT 38 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC-CEEEEEEC
Confidence 68999999997 899999999998876 66766543
No 62
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=31.14 E-value=2e+02 Score=25.82 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=50.2
Q ss_pred EEEEEEEEEecCCEEEEEEEeCCCcCcccCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCch
Q psy8246 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLS 357 (527)
Q Consensus 278 ~~~v~~~~~vs~d~~~~~~~~p~~~~~~~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S 357 (527)
.++|.++++. ++.+.|+|+.|....-.+-++-+|.+ +|. +.|+... +.+.|.+.+- |.-.--
T Consensus 105 ~g~i~~i~~~-~~~~~~~i~~p~~l~~~i~~KgSIav----dGv----SLTV~~v-------~~~~f~v~lI--p~Tl~~ 166 (186)
T 3ddy_A 105 TALVAAIEEN-DAGFSVLIDIPKGLAENLTVKDDIGI----DGI----SLPITDM-------SDSIITLNYS--RDLLAS 166 (186)
T ss_dssp EEEEEEEECC-SSEEEEEEECCTTTCSCCCTTCEEEE----TTE----EEECCEE-------ETTEEEEEEE--GGGGGT
T ss_pred EEEEEEEEEC-CCeEEEEEEcCHHHhhccccCcEEEE----EeE----EEEEEee-------cCCEEEEEEc--HHHHhh
Confidence 4788877764 46788999998654333556666655 463 5677765 4556766665 333222
Q ss_pred HhhhcCCCCCEEEEe
Q psy8246 358 PLLCGLREGQELEVS 372 (527)
Q Consensus 358 ~~L~~l~~Gd~v~i~ 372 (527)
.-|..+++||.|.+.
T Consensus 167 T~l~~~~~Gd~VNlE 181 (186)
T 3ddy_A 167 TNIASLAKDVKVNVE 181 (186)
T ss_dssp SSGGGCCTTCEEEEE
T ss_pred cccccCccCCEEEEE
Confidence 346779999999875
No 63
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=29.21 E-value=19 Score=32.03 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=27.0
Q ss_pred EEEEEEEEeCCCCchHhhhc--CCCCC--EEEEeccccccccCCCCCCccEEEEEecCCc
Q psy8246 343 TLTFLIKSYEDGLLSPLLCG--LREGQ--ELEVSSPEGKFDVGLIGKRNKLVLLAAGTGL 398 (527)
Q Consensus 343 ~l~l~IK~y~~G~~S~~L~~--l~~Gd--~v~i~GP~G~f~~~~~~~~~~ivlIAgGtGI 398 (527)
-+++.++.+++...-+|-.. +--|| .|.+.||+=.+ .+..+.|.|||||
T Consensus 69 G~Cv~~~~~p~~~gdryE~tyS~yfgd~GhISvQGpy~t~-------~Dt~LAITGGTGi 121 (188)
T 2brj_A 69 GLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTY-------EDSFLAITGGAGI 121 (188)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECGGGEEEEEEEEEETT-------BCEEEEEEEEEET
T ss_pred eEEEEEEecCCCCCcEEEEEEEEEeCCCceEEEecccccc-------ccceeeEecCcce
Confidence 36666666543332222221 22233 45555665333 3568899999998
No 64
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=24.78 E-value=21 Score=31.34 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=46.3
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFD 379 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~ 379 (527)
+..|..|.|.....| ..+.|+++.....+ +..+. .++-..-++-+.|-..++||.|.+..|.|...
T Consensus 83 V~~Gs~V~l~~~~~~--~~~~~~iVg~~ead--~~~~~----~~IS~~SPlG~ALlGk~~GD~v~~~~p~G~~~ 148 (156)
T 2f23_A 83 IGLGSVVELEDPLSG--ERLSVQVVSPAEAN--VLDTP----MKISDASPMGKALLGHRVGDVLSLDTPKGKRE 148 (156)
T ss_dssp CCTTCEEEEECTTTC--CEEEEEEECGGGCB--TTSSS----EEEETTSHHHHHHTTCCTTCEEEEEETTEEEE
T ss_pred EEeCcEEEEEEcCCC--CEEEEEEEChhHcC--cCCCC----EEECCCCHHHHHHcCCCCCCEEEEEcCCCcEE
Confidence 678998888653334 45789998764211 13331 34445677888999999999999999999743
No 65
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=24.77 E-value=57 Score=28.01 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=43.6
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEecccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEG 376 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G 376 (527)
+..|..|.+.....| ..+.|+++.....+ +.. -|+-..-++-+.|-..++||+|.+..|.|
T Consensus 57 V~~Gs~V~l~d~~~g--~~~~~~iVg~~ead--~~~------~~IS~~SPlG~ALlGk~vGD~v~v~~P~G 117 (141)
T 2pn0_A 57 VTMNSTVRFRVESSA--EEFCLTLVYPKDVD--TSG------EKISILAPVGSALLGLAQGDEIEWPKPGG 117 (141)
T ss_dssp CCTTCEEEEEETTTC--CEEEEEEECGGGCC--SSS------CEEETTSTTHHHHTTCBTTCEEEEECTTS
T ss_pred EEeCcEEEEEECCCC--CEEEEEEECHhHcC--ccC------CEEcCCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 678998888654334 45789998754211 011 23445677889999999999999999999
No 66
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=22.22 E-value=37 Score=29.84 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=43.2
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEeccccccc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFD 379 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G~f~ 379 (527)
+..|..|.+.. ..| ..+.|+++.....+ +..+ ++-...++.+.|-..++||.|.+..|.|...
T Consensus 85 V~~Gs~V~l~~-~~g--~~~~y~iVg~~ead--~~~~------~IS~~SPlg~ALlGk~vGD~v~v~~P~G~~~ 147 (158)
T 2p4v_A 85 VFFGAWVEIEN-DDG--VTHRFRIVGYDEIF--GRKD------YISIDSPMARALLKKEVGDLAVVNTPAGEAS 147 (158)
T ss_dssp CSSSCEEEEEC-TTC--CCEEEEBCCSTTCC--SSSC------CBCTTSHHHHHSTTCCTTCEEEEECSSCEEE
T ss_pred EeccEEEEEEE-CCC--CEEEEEEECHHHcC--ccCC------eecCCCHHHHHhcCCCCCCEEEEEcCCCcEE
Confidence 67899998866 444 45789998865211 0111 2323455667888899999999999999743
No 67
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=20.81 E-value=1.1e+02 Score=25.82 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=43.7
Q ss_pred cCCccEEEEEEEeCCeeeeeeeeccCCCCCCCCCCCCEEEEEEEEeCCCCchHhhhcCCCCCEEEEecccc-cc
Q psy8246 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEG-KF 378 (527)
Q Consensus 306 ~~pGQ~v~l~~~~~g~~~~R~YT~~s~~~~~~~~~~~~l~l~IK~y~~G~~S~~L~~l~~Gd~v~i~GP~G-~f 378 (527)
+..|..|.+.....| ..+.|+++.....+ +..+ |+-..-++.+.|-..++||+|.+..|.| ..
T Consensus 54 V~~Gs~V~l~~~~~g--~~~~~~iVg~~ead--~~~~------~IS~~SPlG~ALlGk~~GD~v~v~~p~G~~~ 117 (136)
T 3bmb_A 54 VTMNSRVKFRNLSDG--EVRVRTLVYPAKMT--DSNT------QLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 (136)
T ss_dssp CCTTCEEEEEETTTC--CEEEEEEECGGGCC--CTTT------EEETTSHHHHHHTTCBTTCEEEEEETTTEEE
T ss_pred EEeCcEEEEEECCCC--CEEEEEEEChHHcC--cccc------EecCCCHHHHHHcCCCCCCEEEEEcCCCCEE
Confidence 678998888654334 45689998654111 1222 3434566778899999999999999999 53
Done!