RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8246
(527 letters)
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 147 bits (374), Expect = 2e-41
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 275 KFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
++ L ++ + HN L P +P+G H+ +K V+ +I +PYTPV
Sbjct: 10 EYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPV--- 66
Query: 334 QAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLA 393
+ +IK YE G +S + L G L+V P+G+FD ++ ++A
Sbjct: 67 --SSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQFDY-KPNMVKEMGMIA 123
Query: 394 AGTGLTPMIPVINWSIQ--SQRQSVQLVFFNRTEQDIIWRDQLDTFASKNSK 443
GTG+TPM+ V I+ ++ + L+F N E DI+ R +LD A K S
Sbjct: 124 GGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYSN 175
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 138 bits (349), Expect = 2e-37
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 32/196 (16%)
Query: 275 KFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
+RL+ +E ++H+ SP +PVG H+++ ++ + +PYTP+
Sbjct: 15 IKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPI--- 71
Query: 334 QAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKF------ 378
+ + +IK Y G +S L ++ G +E P G
Sbjct: 72 --SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKG 129
Query: 379 ---------DVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQ--SQRQSVQLVFFNRTEQD 427
+I + ++A GTG+TPM+ VI ++ L+F N+TE+D
Sbjct: 130 KFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKD 189
Query: 428 IIWRDQLDTFASKNSK 443
I+ R +L+ +K+S
Sbjct: 190 ILLRPELEELRNKHSA 205
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme,
endoplasmic reticulu flavoprotein, iron, metal-binding,
NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Length = 88
Score = 127 bits (322), Expect = 7e-36
Identities = 46/76 (60%), Positives = 63/76 (82%)
Query: 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVN 109
V++ +L +HNK+DD W+CIRG VYNV+ YM++HPGG +ELMR AG D TELF++VH WVN
Sbjct: 8 VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVN 67
Query: 110 YESILQKCIVGKMGSS 125
YES+L++C+VG+M
Sbjct: 68 YESMLKECLVGRMAIK 83
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 133 bits (336), Expect = 1e-35
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 275 KFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
RL+ +++++ +V L SP +P+G H+F+ + + YTP
Sbjct: 11 GRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPT--- 67
Query: 334 QAAPLSYSNTLTFLIKSY---------EDGLLSPLLCGLREGQELEVSSPEGKF------ 378
+ + L+K Y GL++ L L G ++V P G
Sbjct: 68 --SMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRG 125
Query: 379 DVGLIGKRN---KLVLLAAGTGLTPMIPVINWSIQSQRQS---VQLVFFNRTEQDIIWRD 432
+ GK+ +L ++ G+G+TPM +I ++ Q + + LV+ NRTE DI+ RD
Sbjct: 126 SFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRD 185
Query: 433 QLDTFASKNSK 443
+LD +A++
Sbjct: 186 ELDRWAAEYPD 196
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A
1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A*
1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A*
1m20_A* ...
Length = 93
Score = 112 bits (283), Expect = 2e-30
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 49 LVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWV 108
+ ++ +HN W+ + VY++T++++ HPGG E L AG DATE F V
Sbjct: 6 YYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHST 65
Query: 109 NYESILQKCIVGKMGSSLPDENPFVIPSKKS 139
+ + + I+G++ PD+ + +S
Sbjct: 66 DARELSKTFIIGELH---PDDRSKITKPSES 93
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport;
HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Length = 104
Score = 112 bits (283), Expect = 3e-30
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 49 LVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWV 108
+ ++ +HN W+ + VY++T++++ HPGG E L AG DATE F V
Sbjct: 10 YYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHST 69
Query: 109 NYESILQKCIVGKMGSSLPDENPFVIPSKKSSEPKPLPS 147
+ + + I+G+ L ++ I S + S
Sbjct: 70 DARELSKTFIIGE----LHPDDRSKITKPSESIITTIDS 104
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 111 bits (281), Expect = 5e-30
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNY 110
++A+ N ++W+ I G VY+VTR+++ HPGG E L+ AG+DA+E F V +
Sbjct: 13 RLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDA 72
Query: 111 ESILQKCIVGKMGSS 125
+L++ +G + S
Sbjct: 73 REMLKQYYIGDIHPS 87
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 110 bits (276), Expect = 2e-29
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 49 LVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWV 108
++A++A++N +D W I VY+VT +++ HPGG E L+ AG DATE F V
Sbjct: 8 YFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSS 67
Query: 109 NYESILQKCIVGKMGSS 125
+ ++++ VG++ +
Sbjct: 68 DAREMMKQYKVGELVAE 84
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 103 bits (258), Expect = 1e-26
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 49 LVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWV 108
LV A L HN + W I G VY++ + L + AG D +
Sbjct: 25 LVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFE 84
Query: 109 NYESILQKCIVGKMGSSLPDENPFVIP 135
+ + VG+ PD+ IP
Sbjct: 85 DTRESMHAFCVGQYLE--PDQEGVTIP 109
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 106 bits (268), Expect = 2e-26
Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
+ + T ++ + T + +T+ +P+ + G + ++ + + Y+ V
Sbjct: 2 ADWVTGKVTKVQNWTDALFSLTVH--APVLPFTA-GQFTKLGLEIDGERVQRAYSYV--- 55
Query: 334 QAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVGL-IGKRNKLVLL 392
+P + L F + + DG LSP L L+ G E++V S F V + L +L
Sbjct: 56 -NSP--DNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWML 112
Query: 393 AAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFASK 440
A GT + P + ++ R + LV R D+ + + +
Sbjct: 113 ATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKR 161
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 100 bits (250), Expect = 7e-26
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNY 110
+K ++A+HN ++D+W+ G V+++T + HPGG + ++ AG DAT + + P V
Sbjct: 7 TKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKA 65
Query: 111 ----ESILQKCIVGK 121
L++ +GK
Sbjct: 66 ADVVMKKLKQTCIGK 80
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 97.4 bits (243), Expect = 8e-25
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKV-----H 105
+ Q+AEH+ DD WM I G VY++T Y+ HPG ++ G ++TE + H
Sbjct: 11 TLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPH 70
Query: 106 PWVNYESILQKCIVGK 121
+ +LQ+ ++G
Sbjct: 71 SSLAAR-LLQRYLIGT 85
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 92.9 bits (231), Expect = 2e-21
Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 10/178 (5%)
Query: 266 TSSVNIPVSKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISK 325
+ V+ +SKF+T +L T + T + G + V+ +++
Sbjct: 9 YAPVSESMSKFDTATVLSVHHWTDTLFSFTCT-RDQALRFNN-GEFTMVGLEVDGKPLTR 66
Query: 326 PYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGK 385
Y+ V P +Y L F ++G L+ L L+ G + + V
Sbjct: 67 AYSIVSP------NYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLL 120
Query: 386 RNK-LVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFASKN 441
K L +L+ GTGL P + +I +R V L R + ++ + D + +
Sbjct: 121 PGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGH 178
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 87.4 bits (217), Expect = 2e-21
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 51 SKAQLAEHNK-EDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAG--MDATELFNKVHPW 107
+K +++ H E +W+ + V++VT ++D HPGG +LM AG ++ VH
Sbjct: 8 TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQ 67
Query: 108 VNYESILQKCIVGK 121
+ +L + +G+
Sbjct: 68 SHVRELLAQYKIGE 81
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 90.8 bits (226), Expect = 1e-20
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 11/174 (6%)
Query: 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHV--FIKFIVNDVDISKPYTP 329
V F ++ V+ N V L+ V F+ + D+S+ Y+P
Sbjct: 7 EVGSF-EAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSP 65
Query: 330 VEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNK 388
A + L FLI+ +G S L R GQ L V P G F + G
Sbjct: 66 -----ANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMA-P 119
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+A GTGL P++ ++ + ++ F TE ++ + D+L +
Sbjct: 120 RYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSM 173
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 89.0 bits (221), Expect = 4e-20
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 10/170 (5%)
Query: 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
S T R+L + +P + G V I V+ + + Y+ P
Sbjct: 1 SNLYTERVLSVHHWNDTLFSFKTT-RNPGLRFKT-GQFVMIGLEVDGRPLMRAYSIASP- 57
Query: 334 QAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNK-LVLL 392
+Y L F DG L+ L L+EG EL VS V K L LL
Sbjct: 58 -----NYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLL 112
Query: 393 AAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFASKN 441
+ GTG+ P + VI +R V LV R ++ + D + ++
Sbjct: 113 STGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEH 162
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 86.0 bits (213), Expect = 6e-19
Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 31/243 (12%)
Query: 262 TSNSTSSVNIPVSKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKF-IVND 320
T N T+ + + + T + + + G V I N
Sbjct: 2 TVNETTPIAPAKVLPDAQTVTSVRHWTDTLFSFRVT-RPQTLRFRS-GEFVMIGLLDDNG 59
Query: 321 VDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKF-- 378
I + Y+ P ++ L F DG L+ L ++ G+++ +
Sbjct: 60 KPIMRAYSIASP------AWDEELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLV 113
Query: 379 -DVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQR-QSVQLVFFNRTEQDIIWRDQLDT 436
D L GKR L LA GTG+ P ++ ++ V ++ RT ++ + QL
Sbjct: 114 IDALLPGKR--LWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVAELEYGRQLVE 171
Query: 437 FASKNSK------------PSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNS 484
++ P++ R E I+ + + + + +
Sbjct: 172 ALQEDPLIGELVEGKLKYYPTTTR----EEFHHMGRITDNLASGKVFEDLGIAPMNPETD 227
Query: 485 LVY 487
Sbjct: 228 RAM 230
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 83.7 bits (207), Expect = 1e-17
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 276 FNTMRLLHQEQVTHNVVLITLEYT--SPMFFYVPVGHHVFIKFIVND--VDISKPYTPVE 331
+ T + + + + LE P+ + P G + + V + + Y+
Sbjct: 154 WRTFVIREKRPESDVITSFILEPADGGPVVNFEP-GQYTSVAIDVPALGLQQIRQYS--- 209
Query: 332 PLQAAPLSYSNTLTFLIK-----SYEDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGK 385
L P T +K G +S LL + G ++++++P G F + + K
Sbjct: 210 -LSDMPNG--RTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVDAK 266
Query: 386 RNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+VL++ G GLTPM+ ++ ++Q+ + V V R RD+L A
Sbjct: 267 T-PIVLISGGVGLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTY 321
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 81.7 bits (202), Expect = 4e-17
Identities = 34/186 (18%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 265 STSSVNIPVSKFNTMRLLHQEQVTHNVVLITLEY--TSPMFFYVPVGHHVFIKFIVNDVD 322
S+ + F L E ++ + + ++ P ++ G ++ +
Sbjct: 98 SSEVCKTKIHHFEG-TLARVENLSDSTITFDIQLDDGQPDIHFLA-GQ--YVNVTLPGTT 153
Query: 323 ISKPYTPVEPLQAAPLSYSNT-----LTFLIKSYEDGLLSPLLCG-LREGQELEVSSPEG 376
++ Y S+S+ F++++ G +S L + G ++ + P G
Sbjct: 154 ETRSY-----------SFSSQPGNRLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFG 202
Query: 377 KFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLD 435
F L + +++LA GTG+ P + ++ Q V+LVF + D++ +QLD
Sbjct: 203 SF--YLRDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLD 260
Query: 436 TFASKN 441
K
Sbjct: 261 ALQQKL 266
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 82.4 bits (204), Expect = 7e-17
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 49 LVSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWV 108
+S A++A+HNK DD W+ I G VY++TR++ HPGG++ + AG D T +F +H
Sbjct: 10 KISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPN 69
Query: 109 NYESIL-QKCIVGKMGSSLPDEN--PFVIPSKKSSEPKPLPSINVPVKPFEN-------E 158
+ + + +G + S+P E P P + + + + P +N E
Sbjct: 70 VIDKYIAPEKKLGPLQGSMPPELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDFE 129
Query: 159 KASSNNVSKSFY 170
+S ++K +
Sbjct: 130 YLASQTLTKQAW 141
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 76.1 bits (188), Expect = 8e-16
Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 276 FNTMRLLHQEQVTHNVVLITLEYT--SPMFFYVPVGHHVFIKFIVNDVDISKP--YTPVE 331
T + ++ + V L + Y P G ++ I+ D + Y+
Sbjct: 3 GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQP-GQYIGIEVTPEGSDYREIRQYS--- 58
Query: 332 PLQAAPLSYSNTLTFLIK-----SYEDGLLSPLLC-GLREGQELEVSSPEGKFDVGLIGK 385
L A +K S GL+S L ++ G +++ +P G F + +
Sbjct: 59 -LSHAS--NGREYRISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDF--FYVER 113
Query: 386 RNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+VL++AG G TPM +++ + + V ++ + ++ + + ++
Sbjct: 114 ERPVVLISAGVGATPMQAILHTLAKQNKSGVTYLYACNSAKEHTFAQETAQLIAQQ 169
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 74.1 bits (183), Expect = 3e-15
Identities = 26/168 (15%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 280 RLLHQEQVTHNVVLITLEYTSPMFF----YVPVGHHVFIKFIVNDVDISKPYTPVEPLQA 335
++ E +T V + + + F Y+ V ++++ D +P++ A
Sbjct: 6 KVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMV--------VMDERD-KRPFSM-----A 51
Query: 336 APLSYSNTLTFLIKSYEDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLVLLAA 394
+ + I + E L + + + + ++ V P G+ + +R ++L+A
Sbjct: 52 STPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEER-PMILIAG 110
Query: 395 GTGLTPMIPVINWSIQSQ-RQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
GTG + ++ ++ + + + + R EQ + +L+ + K+
Sbjct: 111 GTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKH 158
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 76.3 bits (188), Expect = 3e-15
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 14/172 (8%)
Query: 276 FNTMRLLHQEQVTHNVVLITLEYT--SPMFFYVPVGHHVFIKFIVND--VDISKPYTPVE 331
R++ + + + LE + Y P G ++ + + Y+
Sbjct: 152 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRP-GQYLGVWLKPEGFPHQEIRQYS--- 207
Query: 332 PLQAAPLSYSNTLTFLIKSYEDGLLSPLLCG-LREGQELEVSSPEGKFDVGLIGKRNKLV 390
L P +K E G +S L G +++ +P G F + + +
Sbjct: 208 -LTRKPDG--KGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDT-PVT 263
Query: 391 LLAAGTGLTPMIPVINWSIQSQRQ-SVQLVFFNRTEQDIIWRDQLDTFASKN 441
L++AG G TPM+ +++ ++ V + D++
Sbjct: 264 LISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSL 315
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 63.4 bits (155), Expect = 2e-11
Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 21/176 (11%)
Query: 274 SKFNTM-RLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEP 332
S+ M ++ Q +V +N+ + L+ T +P G F+ V +
Sbjct: 2 SQLQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLP-GQ--FLHLAVPNGA---------M 49
Query: 333 LQAAPLSYS------NTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGK-FDVGLIGK 385
L P+S S T T L + ++ + L L G +++V P G F V +
Sbjct: 50 LLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTS 109
Query: 386 RNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+K++++ G G+ P+ + ++ + ++ +E I ++ +
Sbjct: 110 TDKILIIGGGIGVPPLYELAKQ-LEKTGCQMTILLGFASENVKILENEFSNLKNVT 164
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: FAD; 2.95A {Porphyromonas gingivalis}
Length = 290
Score = 58.0 bits (140), Expect = 2e-09
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 346 FLIKSYEDGLLSPLLCGLREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVI 405
+ G+ S + L+ G ++ +S P G F + +++ + G G+ P+ I
Sbjct: 118 KWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFH--IQDTDAEMLYIGGGAGMAPLRAQI 175
Query: 406 NWSIQSQ--RQSVQLVFFNRTEQDIIWRDQLDTFASKNS 442
++ + V + R++ +I + + +
Sbjct: 176 LHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFP 214
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 58.0 bits (141), Expect = 2e-09
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 363 LREGQELEVSSPEGKFDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFN 422
EG +EVS P +F L + +L+A G G+TPM+ + +S +L +
Sbjct: 90 TSEGDAVEVSLPRNEF--PLDKRAKSFILVAGGIGITPMLSMARQLRAEGLRSFRLYYLT 147
Query: 423 RTEQDIIWRDQL 434
R + + D+L
Sbjct: 148 RDPEGTAFFDEL 159
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 53.7 bits (129), Expect = 8e-08
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 51 SKAQLAEHN-KEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVN 109
++ ++ H E+ +W+ V++VT +++ HPGG ++++ AG F ++
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEP-FWALYAVHG 66
Query: 110 --YESILQKCIVGKMGSSLPDENPFVIPSKKSSEPKPLPSINV-PVKPFENE 158
+ L + S + +P P + V KPF E
Sbjct: 67 EPHVLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPFNAE 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 3e-07
Identities = 75/527 (14%), Positives = 161/527 (30%), Gaps = 183/527 (34%)
Query: 73 YNVTRYMDFH----------PGGREEL--MRGAG-----MDA-------TELFNKVHPWV 108
YNV+R + P + + G+G +D ++ K+ W+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WL 187
Query: 109 NY------ESILQK----C-IVGKMGSSLPDENPFVIPSKKSSEPKPLPSINVPVKPFEN 157
N E++L+ + +S D + I + S L + + KP+EN
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRL-LKSKPYEN 245
Query: 158 -----EKASSNNVSKSFYSMDWFQQLNFICFVFYLKSSCPKVLI-TLNENNTD-LS---- 206
+ +F N C K+L+ T + TD LS
Sbjct: 246 CLLVLLNVQNAKAWNAF---------NLSC----------KILLTTRFKQVTDFLSAATT 286
Query: 207 --LLINERSLLLHLEQPV----KW--------PCQVK------INLNVGKLQLQLNKEEA 246
+ ++ S+ L ++ K+ P +V +++ + + ++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAES-IRDGLATW 344
Query: 247 KLWKH-------HSTKTSTNNITSNST-----------SSVNIPVSKFNTMRLLHQEQVT 288
WKH ++S N + S +IP + L+ + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIK 401
Query: 289 HNVVLITLEYTS---------PMFFYVPVGHHVFIKF---IVNDVDISKPYTPVEPLQAA 336
+V+++ + + ++++ + N+ + + + V+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHR--SIVD----- 451
Query: 337 PLSYSNTLTF----LIKSYEDG-LLSPL---LCGLREGQELEVSSPEGKFDVGLIGKRNK 388
Y+ TF LI Y D S + L + + + + D + K
Sbjct: 452 --HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFL--EQK 506
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDI-IWRDQLDTFASKNSKPSSP 447
+ T ++N T Q + ++ + N
Sbjct: 507 IR--HDSTAWNASGSILN-----------------TLQQLKFYKP----YICDND----- 538
Query: 448 RNPSTEIKPLKNIISFLMRIRTTLKRVELEDLL-----NSNSLVYSQ 489
P E + I+ FL +I L + DLL + ++ +
Sbjct: 539 --PKYERL-VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 31.0 bits (69), Expect = 1.3
Identities = 27/230 (11%), Positives = 71/230 (30%), Gaps = 73/230 (31%)
Query: 310 HHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPLLCG-----LR 364
HH + F + Y + ++ +ED + C +
Sbjct: 3 HHHHMDFETGEHQ---------------YQYKD----ILSVFEDAFVDNFDCKDVQDMPK 43
Query: 365 E---GQELE--VSSPEGK------FDVGLIGKRNKLVLLAAGTGLTPMIPVI--NWSIQS 411
+E++ + S + F L+ K+ ++V L + +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 412 QRQSVQLVFFNRTEQDIIWRDQLDTFASKNSKPSSPRNPSTEIKPLKNIISFLMRIRTTL 471
++ S+ + ++D ++ D ++ + N + ++P + L+ +R
Sbjct: 103 RQPSMMTRMYI-EQRDRLYND---------NQVFAKYN-VSRLQPYLKLRQALLELRP-- 149
Query: 472 KRVELEDLLNSNSLVY-------SQLNLPYAVAAVADKMTGMENKMNPEI 514
N L+ + + A+ ++ KM+ +I
Sbjct: 150 ---------AKNVLIDGVLGSGKTWV----ALDVCLSY--KVQCKMDFKI 184
>1j03_A Putative steroid binding protein; alpha and beta, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
d.120.1.2 PDB: 1t0g_A
Length = 102
Score = 43.0 bits (101), Expect = 2e-05
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 46 GRILVSKAQLAEHNKEDD---MWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFN 102
G + + QL+++N D+ +++ I+G V++VT F+ G + M AG DA+
Sbjct: 1 GPMEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMF-AGKDASRALG 59
Query: 103 KVHP 106
K+
Sbjct: 60 KMSK 63
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 37.5 bits (87), Expect = 0.001
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 172 MDWFQQLNFICFVFYLKSSCP-KVLITLNENNTDLSLLI---NERSLLLHLEQPVKWPCQ 227
+++Q+ + + K V I E + + + + L L + P +
Sbjct: 5 HEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKII-PDK 63
Query: 228 VKINLNVGKLQLQLNKEEAKLWK 250
K + K+++ L K + W
Sbjct: 64 CKYEVLSTKIEICLAKADIITWA 86
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.60A {Pyrococcus
furiosus}
Length = 158
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 363 LREGQELE-VSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVF 420
++EG L V+ P G + K K++ + A TG+ + P+ Q V +
Sbjct: 1 MKEGDSLLNVAGPLGTPVP---MEKFGKILAIGAYTGIVEVYPIAKA-WQEIGNDVTTLH 56
Query: 421 FNRTEQDIIWRDQLDTFASKN 441
E +I +++L+ +++
Sbjct: 57 V-TFEPMVILKEELEKAVTRH 76
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 39.0 bits (91), Expect = 0.002
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 27/131 (20%)
Query: 337 PLSYSNTLTFLIKSYED----------GLLSPLLCGLREGQELEVSSPEGKF----DVGL 382
+ ++ I YE G S + L+ ++ ++ G F D
Sbjct: 109 NNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPND--A 166
Query: 383 IGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQ-----------LVFFNRTEQDIIWR 431
I K + +A GTG++P I + + ++ + + E I++
Sbjct: 167 IQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYL 226
Query: 432 DQLDTFASKNS 442
++L+ F
Sbjct: 227 NELEYFQKMYP 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.006
Identities = 58/342 (16%), Positives = 98/342 (28%), Gaps = 154/342 (45%)
Query: 25 GHSLMDWIR----------LGNSGVNLSGIQGRILVSKAQLAEHNKEDDMWMCIRGVVYN 74
G ++++W+ L + ++ I ++ QLA H Y
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIG---VI---QLA-H--------------YV 250
Query: 75 VT-RYMDFHPGGREELMRG--------------AGMDATE------------LF------ 101
VT + + F PG ++G A D+ E LF
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 102 NKVHPWVNYE-SILQKCI------------------------VGKMGSSLPDENP----- 131
+ +P + SIL+ + V K S LP
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 132 ------FVIPSKKSSEPKPLPSINVPVKPFENEKASSN-NVSKSFYSMDWFQQLNF-ICF 183
V+ S P+ L +N+ KA S + S+ +S ++L F F
Sbjct: 371 VNGAKNLVV----SGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSE---RKLKFSNRF 420
Query: 184 V-----F---YLKSSCPKVLITLNENNTDL---SLLI---------NERSL---LLH--- 217
+ F L + + L +NN + I + R L +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 218 ---LEQPVKWPCQVKINLN------------VGKLQLQLNKE 244
+ PVKW + +G L NK+
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL-THRNKD 521
Score = 28.9 bits (64), Expect = 5.3
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 20/90 (22%)
Query: 43 GIQ----GRILVSKAQLAEH--NKEDDMWM-----CIRGVVYNVTRYMDFHPGG------ 85
G Q G L ++ A+ N+ D+ + I +V N + H GG
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 86 RE---ELMRGAGMDATELFNKVHPWVNYES 112
RE ++ +D K+ +N S
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 37.9 bits (88), Expect = 0.006
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 354 GLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQ 412
G+ S +C L+ G E+ ++ P GK F + ++ LA GTG+ P I + ++ +
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK 191
Query: 413 RQSVQ----LVFFNRTEQDIIWRDQLDTFASK 440
LV+ +++ D L SK
Sbjct: 192 LIKFTGNITLVYGAPYSDELVMMDYLKGLESK 223
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 35.7 bits (82), Expect = 0.007
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 172 MDWFQQLNFICFVFYLKSSCP-KVLITLNENNTDLSLLI---NERSLLLHLEQPVKWPCQ 227
DW+Q + + +K+ V + +E + + + +L L L P+ P Q
Sbjct: 12 YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPII-PEQ 70
Query: 228 VKINLNVGKLQLQLNKEEAKLWKH 251
+ K++++L K EA W+
Sbjct: 71 STFKVLSTKIEIKLKKPEAVRWEK 94
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 35.7 bits (83), Expect = 0.009
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 383 IGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASK 440
+ K K++ + A TG+ + P+ Q V + E +I +++L+ ++
Sbjct: 15 MEKFGKILAIGAYTGIVEVYPIAKA-WQEIGNDVTTLHV-TFEPMVILKEELEKAVTR 70
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 35.1 bits (80), Expect = 0.026
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQS--------VQLVFFNRTEQDIIW-RDQLDTFAS 439
++L+ AG G+TP ++ + + + R W D L S
Sbjct: 20 VMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLES 79
Query: 440 KNSKPSSPRNPSTEI 454
+ + ++ S I
Sbjct: 80 QMQERNNAGFLSYNI 94
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious
disease, rhizobiales, bacteremia, endocarditis,
bacillary angiomatosis; 2.50A {Bartonella henselae}
Length = 167
Score = 28.9 bits (65), Expect = 2.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 70 GVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVH 105
GVVY+ RY++F GR E +R G + T L + V
Sbjct: 52 GVVYH-ARYLEFFERGRSEFLRDTGFNNTLLASGVE 86
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 28.3 bits (64), Expect = 3.1
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 70 GVVYNVTRYMDFHPGGREELMRGAGMDATELFNK 103
GVV++ + Y + R + + AG+ + +
Sbjct: 18 GVVHH-SVYAVYLEAARVDFLERAGLPYHRVEAR 50
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 28.9 bits (64), Expect = 4.4
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 243 KEEAKLWKHHSTKTSTNNITSNSTSSVNIPVSKFNTMRLLHQEQVTHNVVL 293
++EA+ + ST+ + + +++ V +P S F ++L + + L
Sbjct: 25 EQEAEEAETPSTEEKEAGVGNGTSAPVRLPFSGFRVQKVLRESARDKIIFL 75
>1s5u_A Protein YBGC; structural genomics, hypothetical protein,
thioesterase fold, PSI, protein structure initiative;
1.70A {Escherichia coli} SCOP: d.38.1.1
Length = 138
Score = 27.9 bits (63), Expect = 4.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 70 GVVYNVTRYMDFHPGGREELMRGAGMDATELFNK 103
GVVY+ Y+ F+ R E++R L +
Sbjct: 23 GVVYH-ASYVAFYERARTEMLRHHHFSQQALMAE 55
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex
aeolicus} PDB: 2egi_A 2egr_A
Length = 128
Score = 27.5 bits (62), Expect = 5.3
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 70 GVVYNVTRYMDFHPGGREELMRGAGMDATEL 100
G+V++ + Y + R E +R G +++
Sbjct: 18 GIVHH-SNYFRYFEEARGEFLRSKGFPYSKM 47
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 28.5 bits (64), Expect = 5.3
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 28/106 (26%)
Query: 354 GLLSPLLCGLREGQELEVSSPEGK-FDVGLIGKRNKL--------VLLAAGTGLTPMIPV 404
G+ S L + G E++++ P GK L ++LA GTG+TPM
Sbjct: 116 GVCSTYLTHIEPGSEVKITGPVGKEM---------LLPDDPEANVIMLAGGTGITPMRTY 166
Query: 405 INWSIQSQRQSVQ----------LVFFNRTEQDIIWRDQLDTFASK 440
+ + ++ LVF T +I+++++L+ K
Sbjct: 167 LWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK 212
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 28.8 bits (65), Expect = 6.0
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 388 KLVLLAAGTGLTPMIPVINWSIQSQRQSVQL--VFFNRT-EQDIIWRDQLDT 436
+ AG + I V W + + RQ ++ FF+ Q+I W D D
Sbjct: 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDV 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,622,788
Number of extensions: 434111
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 49
Length of query: 527
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 429
Effective length of database: 3,965,535
Effective search space: 1701214515
Effective search space used: 1701214515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)