RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8246
(527 letters)
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 94.2 bits (234), Expect = 4e-24
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 50 VSKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPW-V 108
+S A++A+HNK DD W+ I G VY++TR++ HPGG++ + AG D T +F +H V
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNV 70
Query: 109 NYESILQKCIVGKMGSSLPDENP 131
+ I + +G + S+P E
Sbjct: 71 IDKYIAPEKKLGPLQGSMPPELV 93
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 89.9 bits (223), Expect = 1e-22
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNY 110
+ ++ +HN W+ + VY++T++++ HPGG E L AG DATE F V +
Sbjct: 8 TLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
Query: 111 ESILQKCIVGK 121
+ + I+G+
Sbjct: 68 RELSKTFIIGE 78
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 88.4 bits (219), Expect = 4e-22
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKVHPWVNY 110
++A+ N ++ WM I G VY++TR++ HPGG E L+ AG DATE F + +
Sbjct: 8 RLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDA 67
Query: 111 ESILQKCIVGKM 122
+L++ +G +
Sbjct: 68 REMLKQYYIGDV 79
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 86.9 bits (215), Expect = 1e-21
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 51 SKAQLAEHNKEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFNKV-----H 105
+ Q+AEH+ DD WM I G VY++T Y+ HPG ++ G ++TE + H
Sbjct: 6 TLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPH 65
Query: 106 PWVNYESILQKCIVGK 121
+ +LQ+ ++G
Sbjct: 66 SSLAAR-LLQRYLIGT 80
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 81.1 bits (200), Expect = 1e-19
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 51 SKAQLAEHNK-EDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFN--KVHPW 107
+K +++ H E +W+ + V++VT ++D HPGG +LM AG + VH
Sbjct: 6 TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQ 65
Query: 108 VNYESILQKCIVGK 121
+ +L + +G+
Sbjct: 66 SHVRELLAQYKIGE 79
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 78.1 bits (192), Expect = 2e-18
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 51 SKAQLAEHN-KEDDMWMCIRGVVYNVTRYMDFHPGGREELMRGAGMDATELFN--KVHPW 107
++ ++ H E+ +W+ V++VT +++ HPGG ++++ AG + VH
Sbjct: 6 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 65
Query: 108 VNYESILQKCIVGKMGSS 125
+ +LQ+ VG++
Sbjct: 66 PHVLELLQQYKVGELSPD 83
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn
(Zea mays) [TaxId: 4577]}
Length = 114
Score = 61.3 bits (148), Expect = 3e-12
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 280 RLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPL 338
RL+ +++++ +V L SP +P+G H+F+ + + YTP + +
Sbjct: 6 RLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPT-----SMV 60
Query: 339 SYSNTLTFLIKSYED---------GLLSPLLCGLREGQELEVSSPEGKF 378
L+K Y GL++ L L G ++V P G
Sbjct: 61 DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHV 109
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 55.2 bits (132), Expect = 1e-09
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 18/135 (13%)
Query: 380 VGLIGKRNKLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFAS 439
V + +K++++ G G+ P+ + ++ + ++ +E I ++ +
Sbjct: 2 VAEVTSTDKILIIGGGIGVPPLYELAKQ-LEKTGCQMTILLGFASENVKILENEFSNLKN 60
Query: 440 KNSKPSSPRNPSTEIKPLKNIISFLMRIRTTLKRVELEDLLNSNSLVYSQLNLPYAVAAV 499
K ++ + ++ D + AVA
Sbjct: 61 VTLKIATDDGSYGTKGHVGMLM-------------NEIDFEVDALYTCGAPAMLKAVAKK 107
Query: 500 ADK----MTGMENKM 510
D+ ME++M
Sbjct: 108 YDQLERLYISMESRM 122
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 52.1 bits (124), Expect = 6e-09
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 272 PVSKFNTMRLLHQEQVTHNVVLITLEYTSPM-FFYVPVGHHVFIKFIVNDVDISKPYTPV 330
P K+ +RL+ +E ++H+ SP +PVG H+++ ++ + +PYTP+
Sbjct: 9 PDIKY-PLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPI 67
Query: 331 EPLQAAPLSYS-----NTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKF 378
K G +S L ++ G +E P G
Sbjct: 68 SS-DDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLL 119
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 99
Score = 50.0 bits (119), Expect = 2e-08
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 274 SKFNTMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPL 333
S N R+L L + + T G V I V+ + + Y+ P
Sbjct: 1 SNLNVERVLSVHHWNDT--LFSFKTTRNPSLRFENGQFVMIGLEVDGRPLMRAYSIASP- 57
Query: 334 QAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSS-PEGKF 378
+Y L F ++G L+ L L+EG EL VS P G
Sbjct: 58 -----NYEEHLEFFSIKVQNGPLTSRLQHLKEGDELMVSRKPTGTL 98
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 111
Score = 48.6 bits (115), Expect = 7e-08
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 276 FNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQ 334
+ T + + + + LE G + + V + + + L
Sbjct: 4 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQ--YSLS 61
Query: 335 AAPLSYSNTLTFL---IKSYEDGLLSPLLC-GLREGQELEVSSPEGKF 378
P + ++ G +S LL + G ++++++P G F
Sbjct: 62 DMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSF 109
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 101
Score = 47.5 bits (112), Expect = 1e-07
Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAP 337
M ++ Q +V +N+ + L+ T +P G + + + + +P + ++
Sbjct: 6 MMTVVSQREVAYNIFEMVLKGTLVDEMDLP-GQFLHLAVPNGAMLLRRPISI-----SSW 59
Query: 338 LSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKF 378
+ T T L + ++ + L L G +++V P G
Sbjct: 60 DKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNG 100
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 46.1 bits (108), Expect = 1e-06
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+VL++ G GLTPM+ ++ ++Q+ + V V R RD+L A
Sbjct: 8 IVLISGGVGLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTY 60
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 44.5 bits (104), Expect = 2e-06
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 388 KLVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+L+A G G+TPM+ + +S +L + R + + D+L + ++
Sbjct: 10 SFILVAGGIGITPMLSMARQLRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWRS 63
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain
{Escherichia coli [TaxId: 562]}
Length = 107
Score = 44.0 bits (103), Expect = 3e-06
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 276 FNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQ 334
R++ + + + LE G ++ + + L
Sbjct: 6 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQY--SLT 63
Query: 335 AAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKF 378
P + + + + L G +++ +P G F
Sbjct: 64 RKPDGKGYRIAV-KREEGGQVSNWLHNHANVGDVVKLVAPAGDF 106
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 41.5 bits (96), Expect = 4e-05
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 376 GKFDVGLIGKRN-------KLVLLAAGTGLTPMIPVINWSIQSQ--RQSVQLVFFNRTEQ 426
GKF + K N + ++A GTG+TPM+ VI ++ L+F N+TE+
Sbjct: 1 GKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEK 60
Query: 427 DIIWRDQLDTFASKN 441
DI+ R +L+ +K+
Sbjct: 61 DILLRPELEELRNKH 75
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 41.1 bits (95), Expect = 6e-05
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 376 GKFDVGLIGKRNK-LVLLAAGTGLTPMIPVINWSIQSQRQS---VQLVFFNRTEQDIIWR 431
G F + + + L ++ G+G+TPM +I ++ Q + + LV+ NRTE DI+ R
Sbjct: 1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLR 60
Query: 432 DQLDTFASKN 441
D+LD +A++
Sbjct: 61 DELDRWAAEY 70
>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC
{Methylococcus capsulatus [TaxId: 414]}
Length = 109
Score = 40.1 bits (93), Expect = 6e-05
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 280 RLLHQEQVTHNVVLITLE-----YTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQ 334
++ V+ N V L+ + + P G + + + D+S+ Y+P
Sbjct: 14 EVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEP-GQFMDLT--IPGTDVSRSYSP----- 65
Query: 335 AAPLSYSNTLTFLIKSYEDGLLSPLLCG-LREGQELEVSSPEG 376
A + L FLI+ +G S L R GQ L V P G
Sbjct: 66 ANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLG 108
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 39.9 bits (92), Expect = 1e-04
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 386 RNKLVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFASKN 441
+ +++LA GTG+ P + ++ Q + V+LVF + D++ +QLD K
Sbjct: 5 KRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKL 61
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 39.5 bits (91), Expect = 2e-04
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFASKN 441
+ L++AG G TPM+ +++ ++ + V + D++
Sbjct: 9 VTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSL 62
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 39.6 bits (91), Expect = 3e-04
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 388 KLVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQLDTFA 438
L +L+ GTGL P + +I +R V L+ R ++ ++ +
Sbjct: 9 HLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHL 60
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 39.1 bits (90), Expect = 4e-04
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQR------QSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+++A GTG+ P + L +++ ++ ++ +
Sbjct: 6 HIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQY 64
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 109
Score = 37.9 bits (88), Expect = 4e-04
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 51 SKAQLAEHNKEDD---MWMCIRGVVYNVTRYMDFH-PGGREELMRGAGMDATELFNK 103
+ QL+++N D+ +++ I+G V++VT F+ GG + AG DA+ K
Sbjct: 13 TAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMF--AGKDASRALGK 67
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 38.4 bits (88), Expect = 5e-04
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 388 KLVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQ 433
L +LA GT + P + ++ R + LV R D+ +
Sbjct: 8 TLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPL 54
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 37.6 bits (86), Expect = 9e-04
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFF-NRTEQDIIWRDQ 433
++L+A GTG + ++ ++ +++ R EQ + +
Sbjct: 8 MILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCE 53
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 38.0 bits (87), Expect = 9e-04
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQS----------VQLVFFNRTEQDIIWRDQLDTFA 438
+++LA GTG+TPM + + ++ LVF T +I+++++L+
Sbjct: 9 VIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQ 68
Query: 439 SKN 441
K
Sbjct: 69 QKY 71
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 36.5 bits (84), Expect = 0.001
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 173 DWFQQLNFICFVFYLKSSCPKVLITLNENNTDLSLLI-----NERSLLLHLEQPVKWPCQ 227
DW+Q + + +K + K + + + +LS L+ + +L L L P+ P Q
Sbjct: 6 DWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPII-PEQ 63
Query: 228 VKINLNVGKLQLQLNKEEAKLWKH 251
+ K++++L K EA W+
Sbjct: 64 STFKVLSTKIEIKLKKPEAVRWEK 87
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 103
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 274 SKFNTMRLLHQEQVTHNVVLITLEYT--SPMFFYVPVGHHVFIKFIVNDVDISKPYTPVE 331
F +++ +E++ ++ L +P+ + + + S E
Sbjct: 6 DGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSRRTYSLCNDSQE 65
Query: 332 PLQAAPLSYSNTLTFLIKSYED--GLLSPLLCGLREGQELEVSSP 374
N +K + G + EG +EVS P
Sbjct: 66 R---------NRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLP 101
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 100
Score = 34.7 bits (79), Expect = 0.004
Identities = 12/107 (11%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 273 VSKFNTMRLLHQEQVTHNVVLITLEYTSP-MFFYVPVGHHVFIKFIVNDVDISKPYTPVE 331
+ F L E ++ + + ++ + G +V + ++ Y+
Sbjct: 1 IHHF-EGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTL--PGTTETRSYSFSS 57
Query: 332 PLQAAPLSYSNTLTFLIKSYEDGLLSPLLCGLREGQELEVSSPEGKF 378
T + + + L + G ++ + P G F
Sbjct: 58 QPG-----NRLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSF 99
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 35.6 bits (81), Expect = 0.006
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 389 LVLLAAGTGLTPMIPVI------NWSIQSQRQSVQLVFFNRTEQDIIWRDQLDTFASKN 441
+++L GTG+ P + L T ++++++ + K
Sbjct: 11 IIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKA 69
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 35.0 bits (79), Expect = 0.006
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQS-VQLVFFNRTEQDIIWRDQ 433
+A GTGL P++ ++ + + ++ F TE ++ + D+
Sbjct: 11 RYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDE 56
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 34.8 bits (79), Expect = 0.010
Identities = 7/55 (12%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQSVQLVFF--NRTEQDIIWRDQLDTFASKN 441
++++ GTG+ P + + +FF +D +++ + + +
Sbjct: 9 VIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEG 63
>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 33.3 bits (75), Expect = 0.013
Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 278 TMRLLHQEQVTHNVVLITLEYTSPMFFYVPVGHHVFIKFIVNDVDISKPYTPVEPLQAAP 337
+ ++ E +T V + F G ++ + D +P++ A+
Sbjct: 4 SCKVTSVEAITDTVY--RVRIVPDAAFSFRAGQYLMVVMDERDK---RPFSM-----AST 53
Query: 338 LSYSNTLTFLIKSYEDGLLSP-LLCGLREGQELEVSSPEGKF 378
+ I + E L + ++ + + ++ V P G+
Sbjct: 54 PDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEA 95
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 32.0 bits (72), Expect = 0.079
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 389 LVLLAAGTGLTPMIPVINWSIQSQRQS-----VQLVFFNRT-EQDIIWRDQLDTFASKN 441
++++ GTG+ P + I + Q L + R ++D ++R++L F
Sbjct: 10 VIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDG 68
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 79
Score = 28.6 bits (64), Expect = 0.39
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 306 VPVGHHVFIKFIVNDVDISKPYTPVEPLQAAPLSYSNTLTFLIKSYEDGLLSPL---LCG 362
+ +G V ++ ++ +S V P +A L ++ SP+ L G
Sbjct: 6 IGLGSVVELEDPLSGERLS--VQVVSPAEANVLDTPMKISDA---------SPMGKALLG 54
Query: 363 LREGQELEVSSPEGKFDV 380
R G L + +P+GK +
Sbjct: 55 HRVGDVLSLDTPKGKREF 72
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 29.0 bits (64), Expect = 0.83
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 389 LVLLAAGTGLTPMIPVINW 407
+L+ GTG+ P
Sbjct: 12 CILVGPGTGIAPFRSFWQQ 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,873,999
Number of extensions: 83740
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 38
Length of query: 527
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 438
Effective length of database: 1,185,626
Effective search space: 519304188
Effective search space used: 519304188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)