BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8249
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDIKIE+FCE PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 13 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 72
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY HLD+KYT+FGKVIDG E
Sbjct: 73 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 132
Query: 177 TLDNLEKLPVN-PNHKPI 193
TLD LEKLPVN ++P+
Sbjct: 133 TLDELEKLPVNEKTYRPL 150
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDIKIE+FCE PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY HLD+KYT+FGKVIDG E
Sbjct: 67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126
Query: 177 TLDNLEKLPVN-PNHKPI 193
TLD LEKLPVN ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 4/141 (2%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD+K ELFC CPK C+NFLAL AS YY IFH+NIKGFI+Q GDPT TGKGG SI
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNG----PNTNASQFFITYAAHAHLDLKYTIFGKVI 172
+G+ F+DE LK+ RGI+SMA+ G PNTN SQFFITY++ L+ +Y IFGK+I
Sbjct: 83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142
Query: 173 DGFETLDNLEKLPVNPNHKPI 193
DGFETL+ LE P + +HKPI
Sbjct: 143 DGFETLNTLENCPSDKSHKPI 163
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 93/138 (67%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD ++EL+ PKTC NF LC +Y+ IFHR I F++Q GDPT TGKGG SI
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 104
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+G+ FEDE + LKH+ GI+SM+NNGPNTN+SQFFIT A HLD K+TIF +V
Sbjct: 105 YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 164
Query: 177 TLDNLEKLPVNPNHKPIF 194
++N+ + +KPIF
Sbjct: 165 CIENIASVQTTATNKPIF 182
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 86/132 (65%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI +LF +CPKT ENF + YYNG FHR IKGF++QTGDPT TG GG SI
Sbjct: 28 TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 87
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WG +FEDEF TL+H +SMAN G NTN SQFFIT LD K+T+FG+V G E
Sbjct: 88 WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGME 147
Query: 177 TLDNLEKLPVNP 188
+ + + VNP
Sbjct: 148 VVQRISNVKVNP 159
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 100/132 (75%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD+ +EL C+ PKTCENF+ LC YY+G IFHR+I+ F++Q GDPT TG GG S
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESY 85
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGK F+DEF+ L H+ RGI+SMAN+GPN+N SQFFIT+ + A+LD K+TIFG+V+ GF+
Sbjct: 86 WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145
Query: 177 TLDNLEKLPVNP 188
L +E + +P
Sbjct: 146 VLTAMENVESDP 157
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 92/137 (67%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI I LF ++C KT +NF + YYN CIFHR IK F+VQTGDP+ G GG SI
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESI 71
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WG +FEDEF + L HS+ +VSMAN GPNTN SQFFIT LD K+T+FGKV G +
Sbjct: 72 WGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSK 131
Query: 177 TLDNLEKLPVNPNHKPI 193
+ ++EK+ + KP+
Sbjct: 132 IVLDIEKVRTDKRDKPL 148
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I +EL+ + PKTC+NF L YYNG FHR IK F++Q GDPT TG+GG SI
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GK+FEDE LK + GI++MAN GP+TN SQFF+T A LD K+TIFG+V G
Sbjct: 78 YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
++ + + N +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I +EL+ + PKTC+NF L YYNG FHR IK F++Q GDPT TG+GG SI
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GK+FEDE LK + GI++MAN GP+TN SQFF+T A LD K+TIFG+V G
Sbjct: 78 YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
++ + + N +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I +EL+ + PKTC+NF L YYNG FHR IK F++Q GDPT TG+GG SI
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GK+FEDE LK + GI++MAN GP+TN SQFF+T A LD K+TIFG+V G
Sbjct: 78 YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
++ + + N +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI IEL+ ++ PK C NF+ LC YY+ IFHR + GFIVQ GDPT TG GG SI
Sbjct: 31 TTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESI 90
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI-DGF 175
+G F+DEF L+ + RG+V+MAN G + N SQFF T L+ K+TIFGKV D
Sbjct: 91 YGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTV 150
Query: 176 ETLDNLEKLPVNPNHKP 192
+ L ++ ++ + +P
Sbjct: 151 YNMLRLSEVDIDDDERP 167
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIK 97
F+ T D G I +EL+ + P+TC NFL LC +Y G FHR IK
Sbjct: 10 FLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIK 69
Query: 98 GFIVQTGDPTHT-GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYA 156
F++Q GD T G GG SI+G F+DE + +KH E +VSMAN GPNTN SQFFIT
Sbjct: 70 NFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 157 AHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
HL+ + +FGKV+ G E + +E L N ++P+
Sbjct: 129 PAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL 165
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 29 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 86
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 87 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 145
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 146 VVFGKVKEGMNIVEAMERF 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 18 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 75
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 76 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 134
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 135 VVFGKVKEGMNIVEAMERF 153
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F V+ GD G I I LF PKT ENF+AL + Y G IFHR IK F++Q GD
Sbjct: 12 FDVRIGD-KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGD 70
Query: 106 PT-HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G+ F DE FK LKH G VSMAN GP+TN SQFFIT LD
Sbjct: 71 FTARDGTGGMSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 128
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK 207
K+ +FGKV+DG + ++E + + +P+ T +D+K
Sbjct: 129 KHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK 172
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 9 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 67 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 126 VVFGKVKEGMNIVEAMERF 144
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
D G I I LF +D P T ENF LC ++ Y IFHR I+ F++Q GD T+ G
Sbjct: 21 DSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDG 80
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
GG SI+G+KF DE +KH G +SMAN GPNTN SQFFIT A LD ++ +FGK
Sbjct: 81 TGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGK 138
Query: 171 VIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
V+DG + + +EK N + +P+ + A L
Sbjct: 139 VLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 29 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY-- 86
+A+ S N +F F V G G +KIELF + PKT ENF C ++
Sbjct: 1 MAVANSSPVNPVVF------FDVSIGG-QEVGRMKIELFADVVPKTAENFRQFCTGEFRK 53
Query: 87 ------YNGCIFHRNIKGFIVQTGDPTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVS 138
Y G FHR IK F++Q GD + G G SI+ F DE FK L+HS G++S
Sbjct: 54 DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK--LRHSAPGLLS 111
Query: 139 MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKP 192
MAN+GP+TN QFFIT + LD K+ +FGK+IDG + +E +P PN+KP
Sbjct: 112 MANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP 165
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 11/139 (7%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGD 105
D ++ G I ELF + P+TCENF ALC + +Y IFHR I F+ Q GD
Sbjct: 13 DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGD 72
Query: 106 PTH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
T+ G GG SI+G+ F DE +KH + G++SMAN GPNTN+SQFFIT LD K
Sbjct: 73 ITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGK 131
Query: 165 YTIFGKVIDGFETLDNLEK 183
+ +FGKVI+G + +EK
Sbjct: 132 HVVFGKVIEGMNVVREMEK 150
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI++MAN GPNTN SQFFI A LD K+
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FH+ I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
D G I I LF +D P T ENF LC ++ Y IFHR I+ F++Q GD T+ G
Sbjct: 21 DSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDG 80
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
GG SI+G+KF DE +KH G +SMAN GPNTN SQFFIT A LD + +FGK
Sbjct: 81 TGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGK 138
Query: 171 VIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
V+DG + + +EK N + +P+ + A L
Sbjct: 139 VLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 9 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
TH G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 67 THHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +++
Sbjct: 126 VVFGKVKEGMNIVEAMKRF 144
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q G+
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNF 67
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
TH G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 THHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKGFIVQTGDPT 107
G I +LF + CPKTC+NFL LC+ + Y G FHR +K F++Q GD +
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
GKGG SI+G F+DE LKH ++SMAN G +TN SQFFIT HLD +
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG VI GFE ++ +E L + +P
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRP 177
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 9 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 67 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FG V +G ++ +E+
Sbjct: 126 VVFGAVKEGMNIVEAMERF 144
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD +
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 67
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD +
Sbjct: 68 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q G+
Sbjct: 10 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNF 67
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
TH G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD K+
Sbjct: 68 THCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKH 126
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 127 VVFGKVKEGMNIVEAMERF 145
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 58 HTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGD- 105
G I +ELF + PKT ENF ALC + ++ GC FHR IK F++Q GD
Sbjct: 28 RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 87
Query: 106 PTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
G GG SI+G+KFEDE KH + G++SMAN G NTN SQFFIT HLD K+
Sbjct: 88 SNQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKH 146
Query: 166 TIFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G LE + V KP
Sbjct: 147 VVFGQVIKGMGVAKILENVEVK-GEKP 172
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD
Sbjct: 14 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDF 71
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+SMAN GPNTN SQFFI A LD +
Sbjct: 72 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXH 130
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ +E+
Sbjct: 131 VVFGKVKEGMNIVEAMERF 149
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F V+ GD G I I LF + PKT ENF+AL + Y G FHR IK F++Q GD
Sbjct: 20 FDVRIGDK-DVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGD 78
Query: 106 -PTHTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G+ F DE FK LKH G VSMAN GP+TN SQFFIT LD
Sbjct: 79 ITTGDGTGGVSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 136
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLK 207
K+ +FGKVIDG + ++E + + +P+ + +D+K
Sbjct: 137 KHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDVK 180
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
G + ELF + CPKTCENF LC + +Y C+FHR +K F+VQ GD +
Sbjct: 23 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G+GG SI+G FEDE +KH++ ++SMAN G +TN SQFFIT HLD +
Sbjct: 83 EGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G E + +E + KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 11/139 (7%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGD 105
D ++ G I ELF + P+TCENF ALC + +Y IFHR I F+ Q GD
Sbjct: 13 DNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGD 72
Query: 106 PTH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
T+ G GG SI+G+ F DE +KH + G++SMAN GPNTN+SQF IT LD K
Sbjct: 73 ITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGK 131
Query: 165 YTIFGKVIDGFETLDNLEK 183
+ +FGKVI+G + +EK
Sbjct: 132 HVVFGKVIEGMNVVREMEK 150
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
G + ELF + CPKTCENF LC + +Y C+FHR +K F+VQ GD +
Sbjct: 40 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 99
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G+GG SI+G FEDE +KH+ ++SMAN G +TN SQFFIT HLD +
Sbjct: 100 EGNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 158
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G E + +E + KP
Sbjct: 159 VFGQVISGQEVVREIENQKTDAASKP 184
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 82/143 (57%), Gaps = 13/143 (9%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASD----------YYNGCIFHRNIKGFIVQTG 104
D G I +EL+ + PKT ENF ALC + +Y +FHR I F++Q G
Sbjct: 17 DNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGG 76
Query: 105 DPTH-TGKGGNSIWGKKFEDEF--KETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
D T G GG SI+G F DE + +H+ G +SMAN GPNTN SQFFI AA L
Sbjct: 77 DFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWL 136
Query: 162 DLKYTIFGKVIDGFETLDNLEKL 184
D K+ +FG+VIDG + + +E+L
Sbjct: 137 DGKHVVFGRVIDGLDVVKKVERL 159
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F ++ GD G + I LF + PKT +NF+AL + Y FHR IK F++Q GD
Sbjct: 17 FDLRIGDE-DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGD 75
Query: 106 PTH-TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G++F DE FK LKH G VSMAN G +TN SQFFIT A LD
Sbjct: 76 FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
K+ +FGKV++G E + +E + KP+ +T A
Sbjct: 134 KHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIA 169
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F ++ GD G + I LF + PKT +NF+AL + Y FHR IK F++Q GD
Sbjct: 17 FDLRIGDE-DIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGD 75
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G++F DE FK LKH G VSMAN G +TN SQFFIT A LD
Sbjct: 76 FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 133
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
K+ +FGKV++G E + +E + KP+ +T A
Sbjct: 134 KHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIA 169
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TGKGGN 114
G + I LF D PKT ENF L + + Y G IFHR I+ F++Q GD T+ G GG
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
SI+G +F+DE +KH G VSMAN GPN+N SQFF+T A LD ++ +FGKV++G
Sbjct: 79 SIYGTRFDDE-NLKIKHFV-GAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEG 136
Query: 175 FETLDNLEKLPVNPNHKP 192
+ + +E N KP
Sbjct: 137 MDVVKKVENTKTGLNDKP 154
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I + G P G IK +LF + PKT NF ALC + Y G FHR I F++Q GD
Sbjct: 8 ITKNGAPL--GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDF 65
Query: 107 TH-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T G GG SI+G KF DE LKH++ G++SMAN GPNTN SQFFIT + LD K+
Sbjct: 66 TAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKH 124
Query: 166 TIFGKVIDGFETLDNLE 182
+FG+VIDG + +E
Sbjct: 125 VVFGEVIDGMNVVKAIE 141
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 50 IVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDP 106
I G+P G + ELF + PKT ENF AL + Y G FHR I GF Q GD
Sbjct: 9 IAVDGEPL--GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDF 66
Query: 107 T-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T H G GG SI+G+KFEDE LKH+ GI+S AN GPNTN SQFFI A LD K+
Sbjct: 67 TRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKH 125
Query: 166 TIFGKVIDGFETLDNLEKL 184
+FGKV +G ++ E+
Sbjct: 126 VVFGKVKEGXNIVEAXERF 144
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 54 GDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HT 109
G+P G I +ELF P+T ENF ALC + + IFHR I F+ Q GD T H
Sbjct: 17 GEPL--GRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHD 74
Query: 110 GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
G GG SI+G KFEDE +KH+ G++SMAN G NTN SQF IT HLD K+ +FG
Sbjct: 75 GTGGQSIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFG 133
Query: 170 KVIDGFETLDNLEKL 184
V DG +T+ +E
Sbjct: 134 FVKDGMDTVKKIESF 148
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT 107
G + ELF + CPKTCENF LC + +Y +FHR +K F+VQ GD +
Sbjct: 23 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFS 82
Query: 108 H-TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G+GG SI+G FEDE +KH++ ++SMAN G +TN SQFFIT HLD +
Sbjct: 83 EGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G E + +E + KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALC---ASDYYNGCIFHRNIKGFIVQTGDPTH-TGKG 112
T G I LF +D PKT +NF LC A + Y FHR I F++Q GD T G G
Sbjct: 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG 78
Query: 113 GNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI 172
G SI+G KF DE + KH ++GI+SMAN GPNTN SQFFIT A + LD K+ +FG+V
Sbjct: 79 GRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVA 137
Query: 173 D--GFETLDNLEKL-----PVNPNHKP 192
D + + +E L V N +P
Sbjct: 138 DEKSYSVVKEIEALGSSSGSVRSNTRP 164
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F ++ GD G + LF + PKT +NF+AL + Y FHR IK F++Q GD
Sbjct: 10 FDLRIGDE-DVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGD 68
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G++F DE FK LKH G VSMAN G +TN SQFFIT A LD
Sbjct: 69 FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 126
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
K+ +FGKV++G E + +E + KP+
Sbjct: 127 KHVVFGKVLEGMEVVRKVESTKTDSRDKPL 156
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD 105
F ++ GD G + LF + PKT +NF+AL + Y FHR IK F++Q GD
Sbjct: 20 FDLRIGD-EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGD 78
Query: 106 PTHT-GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163
T G GG SI+G++F DE FK LKH G VSMAN G +TN SQFFIT A LD
Sbjct: 79 FTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 136
Query: 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
K+ +FGKV++G E + +E + KP+
Sbjct: 137 KHVVFGKVLEGMEVVRKVESTKTDSRDKPL 166
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + +EL + PKT ENF ALC + Y G FHR I F+ Q GD T H G GG S
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G +F DE TLKH G++SMAN GPNTN SQFFI LD K+ +FG VI+G
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 176 ETLDNLEKL 184
+ + +E
Sbjct: 137 DVVKKIESF 145
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + +EL + PKT ENF ALC + Y G FHR I F+ Q GD T H G GG S
Sbjct: 19 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 78
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G +F DE TLKH G++SMAN GPNTN SQFFI LD K+ +FG VI+G
Sbjct: 79 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 137
Query: 176 ETLDNLEKL 184
+ + +E
Sbjct: 138 DVVKKIESF 146
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + +EL + PKT ENF ALC + Y G FHR I F+ Q GD T H G GG S
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G +F DE TLKH G++SMAN GPNTN SQFFI LD K+ +FG VI+G
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 176 ETLDNLEKL 184
+ + +E
Sbjct: 137 DVVKKIESF 145
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + +EL + PKT ENF ALC + Y G FHR I F+ Q GD T H G GG S
Sbjct: 17 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G +F DE TLKH G++SMAN GPNTN SQFFI LD K+ +FG VI+G
Sbjct: 77 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135
Query: 176 ETLDNLEKL 184
+ + +E
Sbjct: 136 DVVKKIESF 144
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 60 GDIKIELFCEDCPKTCENFLALCA---SDYYNGCIFHRNIKGFIVQTGDPTHT-GKGGNS 115
G I I LF + PKT NF+ L + Y G FHR I F++Q GD T G GG S
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KF DE FK LKH G +SMAN G +TN SQFFIT LD ++ +FGK+++G
Sbjct: 81 IYGEKFADENFK--LKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 175 FETLDNLEKLPVNPNHKPIFFITYAAHAHL 204
+ + +E+ P +P + AA H+
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALC---ASDYYNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I ++L + PKT +NF LC + Y G FHR I GF+VQ GD T H G GG S
Sbjct: 42 GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G+KF DE E LKH++ GI+SMAN G +TN SQFFIT LD K+ +FG+V++G
Sbjct: 102 IYGEKFPDENFE-LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGM 160
Query: 176 ETLDNLEK 183
+ + + K
Sbjct: 161 DVVHKIAK 168
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 12/138 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDY----------YNGCIFHRNIKGFIVQTGDP 106
T G I +ELF + P T ENF ALC + Y G FHR I F++Q GD
Sbjct: 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDF 90
Query: 107 THT-GKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
T G GG SI+G KF DE H ++SMAN GPNTN SQFFIT LD K+
Sbjct: 91 TRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKH 149
Query: 166 TIFGKVIDGFETLDNLEK 183
+FGKV++G E + ++EK
Sbjct: 150 VVFGKVLEGMEVVKSIEK 167
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 83/136 (61%), Gaps = 9/136 (6%)
Query: 55 DPTHTGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TG 110
D G + +L+ + PKT ENF ALC + Y G FHR I F++Q GD T G
Sbjct: 11 DGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNG 70
Query: 111 KGGNSIWGKKFEDE-FKETLKHSER-GIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
GG SI+G KF DE FK KH +R G++SMAN GPNTN SQFFIT LD K+ +F
Sbjct: 71 TGGKSIYGGKFPDENFK---KHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVF 127
Query: 169 GKVIDGFETLDNLEKL 184
G+V+DG++ + +E L
Sbjct: 128 GEVVDGYDIVKKVESL 143
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGD-PTHTG 110
G K ELF PKT ENF C +Y Y IFHR IK F++Q GD H G
Sbjct: 74 GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
G SI+G+KF+DE +KH + G++SMAN+GPNTN QFFIT LD K +FG+
Sbjct: 134 SGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGR 192
Query: 171 VI--DGFETLDNLEKLPVNP 188
+I D L +E + V P
Sbjct: 193 IIDNDSLLLLKKIENVSVTP 212
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGD-PTHTGKGGN 114
G I +EL + P+T ENF ALC + Y+ C FHR I F+ Q GD G GG
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
SI+G+KF+DE L+H G++SMAN+GPNTN SQFFI LD K+ +FG+V+DG
Sbjct: 84 SIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDG 142
Query: 175 FETLDNLEKL 184
+ +E +
Sbjct: 143 QNVVKKMESV 152
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 12/140 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGK 111
T G + IEL + P+ C++FL LCA Y++ IFHR I+ F++Q G P+ +
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 112 GGNSIW-------GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
S G FEDEF L H G++SMAN+G ++N S+FFIT+ + HL+ K
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 165 YTIFGKVIDGFETLDNLEKL 184
+TIFG+V+ G + L EKL
Sbjct: 133 HTIFGRVVGGLDVLRQWEKL 152
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 83/156 (53%), Gaps = 21/156 (13%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGG--N 114
T GD+ +EL+ +CP C NF+ LC YY IFHR +K FIVQ GDPT TG+GG
Sbjct: 28 TSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADT 87
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPN--------------TNASQFFITYAAHAH 160
+ GK F+ E LK RG+V +AN G + TN +QFFIT A
Sbjct: 88 TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADV 147
Query: 161 LDLKYTIFGKVIDGFETLDNLEK---LPVNPNHKPI 193
L+ YT+FGKV TL NL K L V +P+
Sbjct: 148 LNNAYTLFGKVTG--HTLYNLMKFNDLEVGKEDRPM 181
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I +L+ E PKT +NF L + Y IFHR I F++Q GD T H G GG S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G+KF DE +KH++ G++SMAN G NTN SQFFIT + LD K+ +FG+VI+G
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 176 ETLDNLE 182
+ + +E
Sbjct: 136 DIVRKVE 142
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I +L+ E PKT +NF L + Y IFHR I F++Q GD T H G GG S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 116 IWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGF 175
I+G+KF DE +KH++ G++SMAN G NTN SQFFIT + LD K+ +FG+VI+G
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 176 ETLDNLE 182
+ + +E
Sbjct: 137 DIVRKVE 143
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 14/136 (10%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASD----------YYNGCIFHRNIKGFIVQTGDPTH 108
+G I +EL+ + PKT NF ALC + ++ G FHR I F++Q GD T
Sbjct: 17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 109 -TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G GG SI+G+KF DE FKE KH+ G++SMAN GPNTN SQFF+ LD K+
Sbjct: 77 GNGTGGESIYGEKFPDENFKE--KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHV 134
Query: 167 IFGKVIDGFETLDNLE 182
+FG+V++G + + +E
Sbjct: 135 VFGRVVEGLDVVKAVE 150
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
G I++ L + P T ENF LC + + G FHR I F+ Q GD T H G GG
Sbjct: 25 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
SI+GKKF+DE LKH+ G++SMAN+GPNTN SQFF+T LD K+ +FG+V +G
Sbjct: 85 SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 143
Query: 175 FETLDNLE 182
+ L +E
Sbjct: 144 LDVLRQIE 151
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
G I++ L + P T ENF LC + + G FHR I F+ Q GD T H G GG
Sbjct: 17 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 76
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
SI+GKKF+DE LKH+ G++SMAN+GPNTN SQFF+T LD K+ +FG+V +G
Sbjct: 77 SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 135
Query: 175 FETLDNLE 182
+ L +E
Sbjct: 136 LDVLRQIE 143
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 20/153 (13%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIV 101
T+ GDIKI LF PKT NF+ L + +Y+G +FHR I+GF++
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 102 QTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
Q GDPT TG+ G KF DEF L+ + +++MAN GP TN SQFFIT HL
Sbjct: 90 QGGDPTGTGR---GGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 162 DLKYTIFGKVIDG--FETLDNLEKLPVNPNHKP 192
+ ++TIFG+VID ++ + K + N +P
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRP 179
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 15/69 (21%)
Query: 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNI 46
+ +LHT+ GDIKI LF PKT NF+ L + +Y+G +FHR I
Sbjct: 25 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVI 84
Query: 47 KGFIVQTGD 55
+GF++Q GD
Sbjct: 85 QGFMIQGGD 93
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGN 114
G I+ L + P T ENF LC + + G FHR I F Q GD T H G GG
Sbjct: 26 AGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGK 85
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
SI+GKKF+DE LKH+ G++S AN+GPNTN SQFF+T LD K+ +FG+V +G
Sbjct: 86 SIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 144
Query: 175 FETLDNLE 182
+ L +E
Sbjct: 145 LDVLRQIE 152
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 54 GDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTH 108
GDP T G+I++EL + P + +NF+ S +YN FHR I GF++Q G T
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL-----D 162
+ ++E L+++ RG ++MA +A SQFFI A +A L D
Sbjct: 63 QMQ--QKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 163 LKYTIFGKVIDGFETLDNLEKLP 185
Y +FGKV+ G + D + ++P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVP 142
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 54 GDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTH 108
GDP T G+I++EL + P + +NF+ S +YN FHR I GF++Q G T
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 109 TGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL-----D 162
+ ++E L+++ RG ++MA +A SQFFI A +A L D
Sbjct: 63 QMQ--QKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119
Query: 163 LKYTIFGKVIDGFETLDNLEKLP 185
Y +FGKV+ G + D + ++P
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVP 142
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
T+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G +P K
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLK--------Y 165
+ ++E LK++ RG ++MA P++ +QFFI + L+ Y
Sbjct: 66 ----EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 166 TIFGKVIDGFETLDNLEKL 184
+F +V+DG + +D ++ +
Sbjct: 121 CVFAEVVDGMDVVDKIKGV 139
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
V+ HT+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG 53
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
T+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G +P K
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLK--------Y 165
+ ++E LK++ RG ++MA P++ +QFFI + L+ Y
Sbjct: 66 ----EPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 166 TIFGKVIDGFETLDNLEKL 184
+F +V+DG + +D ++ +
Sbjct: 121 CVFAEVVDGMDEVDKIKGV 139
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
V+ HT+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG 53
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
T+ G IK+EL PKT ENFL +Y+G IFHR I GF++Q G +P K +
Sbjct: 10 TNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTD 69
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD--------LKYT 166
+ +E LK+ I N P++ +QFFI + L+ Y
Sbjct: 70 A----PIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYA 125
Query: 167 IFGKVIDGFETLDNLEKL 184
+FGKV++G + +D ++ +
Sbjct: 126 VFGKVVEGQDIVDKIKAV 143
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
V LHT+ G IK+EL PKT ENFL +Y+G IFHR I GF++Q G
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGG 57
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
T+ G I ++LF + P+T NF +Y+G IFHR I GF++Q G +P K
Sbjct: 6 TNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQKSTR 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD--------LKYT 166
+ ++E L + + I P++ ++QFFI +A LD Y
Sbjct: 66 A----PIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYA 121
Query: 167 IFGKVIDGFETLDNLEKL 184
+FG+V++G + +D ++ +
Sbjct: 122 VFGEVVEGTDVVDRIKSV 139
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
S+ L T+ G I ++LF + P+T NF +Y+G IFHR I GF++Q G
Sbjct: 1 SIKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGG 53
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 63 KIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKG 112
+I L + P T NF+ L +Y+G R+ GF+VQTGDP +G
Sbjct: 191 RIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEG 239
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 13 KIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDP 56
+I L + P T NF+ L +Y+G R+ GF+VQTGDP
Sbjct: 191 RIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDP 233
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 41/175 (23%)
Query: 60 GDIKIELFCEDCPKTCENFLALC--------------------ASDYYNGCIFHRNIKGF 99
G ++I+LF + P ENF+ L + Y GC FH +
Sbjct: 29 GRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN 88
Query: 100 IVQTGDPTHT-GKGGNSIWGKK-----FEDEFKETLKHSERGIVSMA----NNGPNTNAS 149
+ +GD ++ G +++ + F D F H +G++S+ +G S
Sbjct: 89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYF---YPHESKGLLSLVPYTDESGNRYYDS 145
Query: 150 QFFITY------AAHAHLDLKYTIFGKVIDGFETLDNLEKL--PVNPNHKPIFFI 196
F IT LD + G+V G + LD + + P P F I
Sbjct: 146 TFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSI 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,176,012
Number of Sequences: 62578
Number of extensions: 366030
Number of successful extensions: 1065
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 230
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)