Query psy8249
Match_columns 232
No_of_seqs 171 out of 1828
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:30:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0881|consensus 100.0 1.1E-48 2.5E-53 279.7 7.8 152 2-203 11-162 (164)
2 cd01928 Cyclophilin_PPIL3_like 100.0 9.4E-46 2E-50 285.1 15.2 152 1-202 1-152 (153)
3 KOG0884|consensus 100.0 6.2E-46 1.3E-50 264.2 11.9 159 1-209 1-160 (161)
4 KOG0880|consensus 100.0 6E-46 1.3E-50 285.4 12.0 158 3-210 46-208 (217)
5 cd01923 cyclophilin_RING cyclo 100.0 3.1E-45 6.6E-50 284.1 15.6 157 3-209 2-158 (159)
6 cd01921 cyclophilin_RRM cyclop 100.0 3.9E-44 8.4E-49 280.0 14.8 163 4-209 1-164 (166)
7 COG0652 PpiB Peptidyl-prolyl c 100.0 5.9E-44 1.3E-48 272.3 13.7 147 3-203 2-156 (158)
8 cd01927 cyclophilin_WD40 cyclo 100.0 7.1E-44 1.5E-48 273.3 14.2 147 4-200 1-147 (148)
9 KOG0546|consensus 100.0 1.3E-44 2.8E-49 302.0 10.2 163 46-209 9-183 (372)
10 KOG0882|consensus 100.0 2.4E-44 5.3E-49 306.1 11.0 151 2-202 406-556 (558)
11 KOG0883|consensus 100.0 3.4E-44 7.4E-49 299.9 10.7 161 3-213 280-440 (518)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 3.5E-43 7.7E-48 268.8 13.5 145 4-199 1-145 (146)
13 cd01925 cyclophilin_CeCYP16-li 100.0 4.5E-42 9.8E-47 269.3 15.8 158 2-209 7-165 (171)
14 PLN03149 peptidyl-prolyl isome 100.0 1.6E-40 3.6E-45 263.2 14.0 148 7-204 30-186 (186)
15 PRK10903 peptidyl-prolyl cis-t 100.0 3.7E-40 8E-45 261.8 15.2 150 2-204 30-189 (190)
16 cd01926 cyclophilin_ABH_like c 100.0 3.4E-40 7.3E-45 257.4 14.2 149 2-202 6-164 (164)
17 PRK10791 peptidyl-prolyl cis-t 100.0 9.6E-40 2.1E-44 254.0 14.9 148 3-203 2-162 (164)
18 KOG0415|consensus 100.0 2.4E-40 5.1E-45 274.1 11.5 166 1-209 1-167 (479)
19 PTZ00221 cyclophilin; Provisio 100.0 1.1E-39 2.4E-44 266.2 15.4 155 2-210 54-225 (249)
20 PTZ00060 cyclophilin; Provisio 100.0 1.3E-39 2.7E-44 257.8 14.5 151 2-204 21-182 (183)
21 KOG0879|consensus 100.0 1.1E-39 2.5E-44 236.1 8.0 156 48-204 13-177 (177)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.9E-38 4.1E-43 245.1 13.7 144 4-200 1-154 (155)
23 KOG0885|consensus 100.0 3.7E-38 8E-43 262.6 10.5 165 2-216 14-180 (439)
24 cd00317 cyclophilin cyclophili 100.0 6.3E-37 1.4E-41 235.1 13.6 145 4-199 1-145 (146)
25 PF00160 Pro_isomerase: Cyclop 100.0 7E-36 1.5E-40 231.4 13.0 151 3-203 2-155 (155)
26 cd01924 cyclophilin_TLP40_like 100.0 7.8E-36 1.7E-40 234.5 12.5 150 6-184 3-165 (176)
27 KOG0111|consensus 100.0 4.3E-35 9.2E-40 229.1 7.9 156 47-204 138-297 (298)
28 KOG0865|consensus 100.0 1.7E-28 3.6E-33 188.8 8.8 156 47-204 5-167 (167)
29 cd01921 cyclophilin_RRM cyclop 99.9 2.6E-24 5.6E-29 168.1 10.1 139 57-231 4-143 (166)
30 COG0652 PpiB Peptidyl-prolyl c 99.9 1.6E-23 3.4E-28 160.1 7.7 133 56-231 5-137 (158)
31 cd01924 cyclophilin_TLP40_like 99.9 9.5E-23 2.1E-27 160.3 9.7 153 54-227 1-165 (176)
32 cd01927 cyclophilin_WD40 cyclo 99.9 1.2E-22 2.6E-27 155.8 8.7 132 57-231 4-135 (148)
33 cd01922 cyclophilin_SpCYP2_lik 99.9 2.3E-22 5.1E-27 153.8 8.5 131 57-230 4-134 (146)
34 cd01928 Cyclophilin_PPIL3_like 99.9 2.7E-22 5.9E-27 154.6 8.0 132 57-231 7-138 (153)
35 cd01920 cyclophilin_EcCYP_like 99.9 1.2E-21 2.6E-26 151.4 8.5 130 57-231 4-138 (155)
36 cd01923 cyclophilin_RING cyclo 99.9 1.1E-21 2.3E-26 152.3 8.2 132 57-231 6-137 (159)
37 PRK10791 peptidyl-prolyl cis-t 99.8 3.2E-21 6.9E-26 150.1 8.9 130 57-231 6-143 (164)
38 PLN03149 peptidyl-prolyl isome 99.8 4.6E-21 1E-25 152.0 9.0 141 48-231 21-170 (186)
39 PRK10903 peptidyl-prolyl cis-t 99.8 6.5E-21 1.4E-25 151.6 9.0 130 57-231 35-169 (190)
40 cd01926 cyclophilin_ABH_like c 99.8 2.1E-20 4.5E-25 145.9 10.5 140 48-230 3-150 (164)
41 cd00317 cyclophilin cyclophili 99.8 1.3E-20 2.8E-25 144.5 8.5 131 57-231 4-134 (146)
42 PTZ00060 cyclophilin; Provisio 99.8 1.8E-20 4E-25 148.4 9.5 141 47-230 17-166 (183)
43 PTZ00221 cyclophilin; Provisio 99.8 2.7E-20 5.9E-25 152.4 10.0 139 46-231 53-203 (249)
44 KOG0881|consensus 99.8 5.3E-21 1.2E-25 137.5 4.1 133 57-232 16-148 (164)
45 KOG0884|consensus 99.8 1.3E-20 2.8E-25 134.7 4.7 132 57-232 7-139 (161)
46 KOG0880|consensus 99.8 1.8E-19 3.9E-24 139.4 9.6 140 49-232 43-187 (217)
47 cd01925 cyclophilin_CeCYP16-li 99.8 7E-19 1.5E-23 138.0 8.0 132 57-231 12-144 (171)
48 PF00160 Pro_isomerase: Cyclop 99.8 1.2E-18 2.6E-23 134.8 9.1 133 59-231 9-142 (155)
49 KOG0415|consensus 99.8 7.8E-19 1.7E-23 146.4 5.5 140 57-232 7-147 (479)
50 KOG0883|consensus 99.7 2.1E-18 4.5E-23 145.5 5.2 145 43-232 272-416 (518)
51 KOG0882|consensus 99.7 3.9E-17 8.4E-22 140.3 5.2 133 57-232 411-543 (558)
52 KOG0879|consensus 99.6 1.5E-16 3.3E-21 115.9 4.2 72 1-72 15-96 (177)
53 KOG0546|consensus 99.6 2.7E-16 5.7E-21 132.4 6.2 68 2-69 14-94 (372)
54 KOG0885|consensus 99.4 2.4E-13 5.3E-18 114.5 5.2 129 57-228 19-148 (439)
55 KOG0111|consensus 99.0 2.5E-10 5.4E-15 90.4 2.7 69 2-70 142-215 (298)
56 KOG0865|consensus 98.1 1.9E-06 4.1E-11 66.8 2.6 67 3-69 10-84 (167)
57 TIGR03268 methan_mark_3 putati 95.4 0.046 1E-06 49.1 6.5 96 69-184 209-304 (503)
58 PRK00969 hypothetical protein; 95.2 0.056 1.2E-06 48.7 6.4 95 69-183 212-306 (508)
59 COG4070 Predicted peptidyl-pro 91.9 0.32 7E-06 42.5 5.1 95 69-183 211-305 (512)
60 TIGR03268 methan_mark_3 putati 85.1 3.2 6.9E-05 37.7 6.7 113 61-184 376-496 (503)
61 PF12903 DUF3830: Protein of u 65.7 8 0.00017 29.4 3.2 33 8-43 6-38 (147)
62 PRK00969 hypothetical protein; 61.7 21 0.00046 32.7 5.6 27 11-37 379-405 (508)
63 COG4070 Predicted peptidyl-pro 55.3 9.5 0.00021 33.7 2.3 23 11-33 377-399 (512)
64 PF06138 Chordopox_E11: Chordo 41.7 69 0.0015 23.7 4.6 46 3-48 6-61 (130)
65 PHA03001 putative virion core 33.0 90 0.002 23.1 4.1 46 3-48 6-60 (132)
66 PF10657 RC-P840_PscD: Photosy 31.4 38 0.00082 24.9 1.9 50 20-70 6-55 (144)
67 PF04126 Cyclophil_like: Cyclo 31.0 86 0.0019 22.8 3.9 25 160-184 90-114 (120)
68 cd03575 NTR_WFIKKN NTR domain, 30.1 54 0.0012 23.6 2.5 23 201-223 63-88 (109)
69 PF13496 DUF4120: Domain of un 23.0 62 0.0013 22.1 1.7 17 8-24 37-53 (95)
70 PF12396 DUF3659: Protein of u 22.9 1.1E+02 0.0023 19.8 2.7 28 162-191 17-44 (64)
71 PF05913 DUF871: Bacterial pro 22.9 1.3E+02 0.0028 26.5 4.1 50 133-183 299-349 (357)
72 COG5429 Uncharacterized secret 20.9 1.3E+02 0.0028 24.9 3.4 34 3-43 45-78 (261)
No 1
>KOG0881|consensus
Probab=100.00 E-value=1.1e-48 Score=279.74 Aligned_cols=152 Identities=49% Similarity=0.822 Sum_probs=143.7
Q ss_pred EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
.|.+|||+|.|++|||-+.||+||+||.+|++.+||++..|||+|++|||||||||..|+
T Consensus 11 ~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGR-------------------- 70 (164)
T KOG0881|consen 11 NVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGR-------------------- 70 (164)
T ss_pred eEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCC--------------------
Confidence 489999999999999999999999999999999999999999999999999999986665
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l 161 (232)
++.|+||.+|.+|.++.|+|...|++|||+++|++++|||||||.+.+||
T Consensus 71 ------------------------------GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~L 120 (164)
T KOG0881|consen 71 ------------------------------GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWL 120 (164)
T ss_pred ------------------------------CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCcccc
Confidence 45577888999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249 162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH 203 (232)
Q Consensus 162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 203 (232)
|++|++||||+.||+|+.++-.+.+++++||..+++|..+-.
T Consensus 121 DGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 121 DGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred CCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 999999999999999999999999999999999999986643
No 2
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=9.4e-46 Score=285.10 Aligned_cols=152 Identities=76% Similarity=1.274 Sum_probs=136.6
Q ss_pred CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249 1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA 80 (232)
Q Consensus 1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~ 80 (232)
|+|.|+|+.|+|+|+||++.||+|++||++||+++||+++.|||++++|++|+||+...|..
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g------------------ 62 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG------------------ 62 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCC------------------
Confidence 99999999999999999999999999999999999999999999999999999997633321
Q ss_pred hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249 81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH 160 (232)
Q Consensus 81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ 160 (232)
+.++++..+++|..+.+.|+.+|+++|++.++++++|||||++++.|+
T Consensus 63 --------------------------------~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~ 110 (153)
T cd01928 63 --------------------------------GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPH 110 (153)
T ss_pred --------------------------------CCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcc
Confidence 112334456667666778889999999999999999999999999999
Q ss_pred CCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249 161 LDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA 202 (232)
Q Consensus 161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 202 (232)
||++|+|||+|++|||+|++|++++++++++|..+|+|.+|.
T Consensus 111 Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 111 LDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred cCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 999999999999999999999999999999999999999873
No 3
>KOG0884|consensus
Probab=100.00 E-value=6.2e-46 Score=264.24 Aligned_cols=159 Identities=74% Similarity=1.227 Sum_probs=148.7
Q ss_pred CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249 1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA 80 (232)
Q Consensus 1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~ 80 (232)
|||.++|..|+|+|+||.+.+|++|+||+.||.+.||+++.|||-+++||+|+|+++..|
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tg-------------------- 60 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTG-------------------- 60 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999987444
Q ss_pred hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCC
Q psy8249 81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAH 160 (232)
Q Consensus 81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ 160 (232)
.++.|++|+++.+|+.+.|+|+.+|.+|||+++|++++||||||.+.+||
T Consensus 61 ------------------------------rgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~h 110 (161)
T KOG0884|consen 61 ------------------------------RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH 110 (161)
T ss_pred ------------------------------CCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCc
Confidence 35668889999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeccchhhhcccCCCCCC-CCceeeEEEeeeeecCCCCc
Q psy8249 161 LDLKYTIFGKVIDGFETLDNLEKLPVNPN-HKPIFFITYAAHAHLDLKYT 209 (232)
Q Consensus 161 ld~~~tvfG~VveG~dvl~~I~~~~~~~~-~~P~~~i~I~~~~~ld~~~~ 209 (232)
||.+|++||+|++|+|.|+.|+..+++++ .||+.++.|.+...-..+|+
T Consensus 111 ldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp~a 160 (161)
T KOG0884|consen 111 LDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFA 160 (161)
T ss_pred cceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCcCC
Confidence 99999999999999999999999999986 99999999988876666554
No 4
>KOG0880|consensus
Probab=100.00 E-value=6e-46 Score=285.43 Aligned_cols=158 Identities=43% Similarity=0.693 Sum_probs=141.4
Q ss_pred EEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcC---c-ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchh
Q psy8249 3 VSL-HTDVGDIKIELFCEDCPKTCENFLALCASD---Y-YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCEN 77 (232)
Q Consensus 3 v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~---~-y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~ 77 (232)
+.+ +...|+|+|+||++.+|+||+||.+||.++ + |.++.|||||++|||||||-+
T Consensus 46 i~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t-------------------- 105 (217)
T KOG0880|consen 46 IEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFT-------------------- 105 (217)
T ss_pred EEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccc--------------------
Confidence 344 567899999999999999999999999832 2 788888888888888888854
Q ss_pred hhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC
Q psy8249 78 FLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA 157 (232)
Q Consensus 78 F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~ 157 (232)
.+++.++.|+||.++++|+. .|+|.++|.+|||+.+|++++||||||+..
T Consensus 106 -----------------------------~g~gtGg~SIyG~~F~DENf-~LkH~rpG~lSMAn~GpDtNGsQFfItT~~ 155 (217)
T KOG0880|consen 106 -----------------------------KGDGTGGKSIYGEKFPDENF-KLKHDRPGRLSMANAGPDTNGSQFFITTVK 155 (217)
T ss_pred -----------------------------cCCCCCCeEeecCCCCCccc-eeecCCCceEeeeccCCCCCCceEEEEecC
Confidence 12355677899999999998 899999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcc
Q psy8249 158 HAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTI 210 (232)
Q Consensus 158 ~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~ 210 (232)
.+||||+|+|||+|++|||++.+|+.+++++.++|.+.++|.+|++|..+|+.
T Consensus 156 t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~ 208 (217)
T KOG0880|consen 156 TPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLE 208 (217)
T ss_pred CccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccccchh
Confidence 99999999999999999999999999999999999999999999999987653
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.1e-45 Score=284.13 Aligned_cols=157 Identities=51% Similarity=0.931 Sum_probs=142.1
Q ss_pred EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC 82 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~ 82 (232)
|+|+|++|+|+|+||++.||+|++||++||+.+||+++.|||++++|++|+||++..|..
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~-------------------- 61 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG-------------------- 61 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCC--------------------
Confidence 789999999999999999999999999999999999999999999999999997643321
Q ss_pred cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249 83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD 162 (232)
Q Consensus 83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld 162 (232)
+.++++..+++|....++|+++|+++|+++++++++|||||+++++|+||
T Consensus 62 ------------------------------~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld 111 (159)
T cd01923 62 ------------------------------GESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLD 111 (159)
T ss_pred ------------------------------CccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence 12333455666766678888999999999999999999999999999999
Q ss_pred CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249 163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209 (232)
Q Consensus 163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~ 209 (232)
++|+|||+|++|||+|++|++.+++++++|+.+|+|.+|.++.++|.
T Consensus 112 ~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~ 158 (159)
T cd01923 112 GKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE 158 (159)
T ss_pred CCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence 99999999999999999999999998999999999999999999886
No 6
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.9e-44 Score=279.98 Aligned_cols=163 Identities=40% Similarity=0.667 Sum_probs=139.9
Q ss_pred EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249 4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA 83 (232)
Q Consensus 4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~ 83 (232)
+|+|+.|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+||+...|.....++....
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~------------ 68 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLY------------ 68 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccc------------
Confidence 47999999999999999999999999999999999999999999999999998755443221110000
Q ss_pred CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccC-CCCCC
Q psy8249 84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAA-HAHLD 162 (232)
Q Consensus 84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~-~~~ld 162 (232)
...+..+++|..+.++|+.+|+++|++.++++++|||||++++ .|+||
T Consensus 69 -------------------------------~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ld 117 (166)
T cd01921 69 -------------------------------GRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLD 117 (166)
T ss_pred -------------------------------cccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccC
Confidence 0012234556666788989999999999999999999999986 79999
Q ss_pred CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249 163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209 (232)
Q Consensus 163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~ 209 (232)
++|+|||+|++|||+|++|++++++++++|..+|+|.+|.+|+++|.
T Consensus 118 g~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf~ 164 (166)
T cd01921 118 GKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPFP 164 (166)
T ss_pred CCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999875
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-44 Score=272.27 Aligned_cols=147 Identities=43% Similarity=0.732 Sum_probs=124.2
Q ss_pred EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccc-cccceeccccCCCCcchhhhhh
Q psy8249 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHT-GDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~-G~i~i~l~~~~~P~~~~~F~~l 81 (232)
|.++|+.|+|+|+||++.||+||+||++||+.+||+|+.|||||++||+||||++.. |.
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~-------------------- 61 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGT-------------------- 61 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCC--------------------
Confidence 789999999999999999999999999999999999999999999999999998743 11
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccccccccccc--ccceEEecccC-CCcccceEEeeccCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHS--ERGIVSMANNG-PNTNASQFFITYAAH 158 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~--~~g~v~~~~~~-~~~~~s~f~itl~~~ 158 (232)
++. +..+++|+... .++ .+|++||||.+ |++++|||||++.++
T Consensus 62 ------------------------------gg~---~~~f~~E~~~~-~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~ 107 (158)
T COG0652 62 ------------------------------GGP---GPPFKDENFAL-NGDRHKRGTLSMARAGDPNSNGSQFFITVVDN 107 (158)
T ss_pred ------------------------------CCC---CCCCccccccc-ccccCCcceEeEcccCCcCCccCeEEEEecCC
Confidence 111 24566675532 333 49999999998 999999999999999
Q ss_pred CCCCCCccEEEEEeeccchhhhcccCCCCCC----CCceeeEEEeeeee
Q psy8249 159 AHLDLKYTIFGKVIDGFETLDNLEKLPVNPN----HKPIFFITYAAHAH 203 (232)
Q Consensus 159 ~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~----~~P~~~i~I~~~~~ 203 (232)
||||++|+|||+|++|||+|++|++..+... ..|..+++|.....
T Consensus 108 ~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 108 PFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred cccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 9999999999999999999999999887753 34556677765443
No 8
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7.1e-44 Score=273.34 Aligned_cols=147 Identities=51% Similarity=0.832 Sum_probs=131.5
Q ss_pred EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249 4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA 83 (232)
Q Consensus 4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~ 83 (232)
.|+|++|+|+|+||++.||+|++||++||+.+||+++.|||++++|++|+||+...|..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g--------------------- 59 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTG--------------------- 59 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------
Confidence 47999999999999999999999999999999999999999999999999997533221
Q ss_pred CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249 84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163 (232)
Q Consensus 84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~ 163 (232)
+.++++..+++|..+.++|+++|+++|++.++++++|||||+++++|+||+
T Consensus 60 -----------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg 110 (148)
T cd01927 60 -----------------------------GESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDN 110 (148)
T ss_pred -----------------------------CCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCC
Confidence 123344556677766788888999999999999999999999999999999
Q ss_pred CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEee
Q psy8249 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAA 200 (232)
Q Consensus 164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~ 200 (232)
+|+|||+|++|||+|++|++++++++++|..+|+|.+
T Consensus 111 ~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 111 KHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 9999999999999999999999998999999999974
No 9
>KOG0546|consensus
Probab=100.00 E-value=1.3e-44 Score=301.95 Aligned_cols=163 Identities=43% Similarity=0.652 Sum_probs=155.8
Q ss_pred cceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC-----------CCCCceeEEeecCcEEEcCCCC-CCCCCC
Q psy8249 46 IKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT-HTGKGG 113 (232)
Q Consensus 46 i~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~-----------~y~g~~~~rv~~~~~vq~G~~~-~~~~~~ 113 (232)
.+.|+.+..+....|+|+++||.+.+|+|++||++||++. .|+|+.||||+++|||||||.+ ++|+++
T Consensus 9 pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGG 88 (372)
T KOG0546|consen 9 PRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGG 88 (372)
T ss_pred ceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCc
Confidence 4678999999999999999999999999999999999975 5999999999999999999988 778999
Q ss_pred CccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce
Q psy8249 114 NSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193 (232)
Q Consensus 114 ~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~ 193 (232)
.||||.+|.+|++ .++|+++++|||||.||++++||||||+.++|||||.|+|||+||.|++|++.|+++.+++..+|.
T Consensus 89 eSIYG~~FdDEnF-~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 89 ESIYGEKFDDENF-ELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred ccccccccccccc-eeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeeeecCCCCc
Q psy8249 194 FFITYAAHAHLDLKYT 209 (232)
Q Consensus 194 ~~i~I~~~~~ld~~~~ 209 (232)
.+|+|.+||+|-..+.
T Consensus 168 ~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 168 ADVVISDCGELVKKSK 183 (372)
T ss_pred cceEeccccccccccc
Confidence 9999999999988655
No 10
>KOG0882|consensus
Probab=100.00 E-value=2.4e-44 Score=306.05 Aligned_cols=151 Identities=46% Similarity=0.799 Sum_probs=143.6
Q ss_pred EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
++.|+|++|+|.|+|||++||++|+||..+++.||||+..|||+|++||||+|||..
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g----------------------- 462 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLG----------------------- 462 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCC-----------------------
Confidence 478999999999999999999999999999999999999999999999999999863
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l 161 (232)
.|.+++|+||+.+.+|+++.|+|+++-.+||||+||+++|||||||+...|||
T Consensus 463 ---------------------------~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwl 515 (558)
T KOG0882|consen 463 ---------------------------DGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWL 515 (558)
T ss_pred ---------------------------CCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCcccc
Confidence 34567889999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249 162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA 202 (232)
Q Consensus 162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 202 (232)
|++|||||||..||||+++|+++.++.++||.+++.|.+..
T Consensus 516 d~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 516 DGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred CCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 99999999999999999999999999999999999998754
No 11
>KOG0883|consensus
Probab=100.00 E-value=3.4e-44 Score=299.95 Aligned_cols=161 Identities=48% Similarity=0.871 Sum_probs=153.6
Q ss_pred EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC 82 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~ 82 (232)
|+|.|..|.+.|+|+++.||++|+||+.||+.|||+++.|||.|++|||||||||..|
T Consensus 280 vrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG---------------------- 337 (518)
T KOG0883|consen 280 VRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTG---------------------- 337 (518)
T ss_pred EEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCC----------------------
Confidence 8899999999999999999999999999999999999999999999999999988544
Q ss_pred cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCC
Q psy8249 83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLD 162 (232)
Q Consensus 83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld 162 (232)
.+++|+||+.|++|+.+.|.|+.||++|||++||++++|||||+...+.|||
T Consensus 338 ----------------------------~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd 389 (518)
T KOG0883|consen 338 ----------------------------RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLD 389 (518)
T ss_pred ----------------------------CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhcc
Confidence 4677899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccce
Q psy8249 163 LKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGK 213 (232)
Q Consensus 163 ~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~ 213 (232)
++||+||+||.|+|+|.+|++++++++++|+.+|+|.+..+.-++|+.+-+
T Consensus 390 ~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfeEa~~ 440 (518)
T KOG0883|consen 390 NKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFEEADK 440 (518)
T ss_pred ccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHHHHHH
Confidence 999999999999999999999999999999999999999999888876644
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3.5e-43 Score=268.75 Aligned_cols=145 Identities=51% Similarity=0.854 Sum_probs=129.2
Q ss_pred EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249 4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA 83 (232)
Q Consensus 4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~ 83 (232)
+|+|+.|+|+|+||++.||++++||++||+++||+++.|||++++|++|+||++..|..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~--------------------- 59 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRG--------------------- 59 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCC---------------------
Confidence 47999999999999999999999999999999999999999999999999997633321
Q ss_pred CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249 84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163 (232)
Q Consensus 84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~ 163 (232)
+.++++..+++|..+.++|+++|+++|++.++++++|||||+++++|+||+
T Consensus 60 -----------------------------~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~ 110 (146)
T cd01922 60 -----------------------------GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDG 110 (146)
T ss_pred -----------------------------cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCC
Confidence 112334456667666788888999999999999999999999999999999
Q ss_pred CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199 (232)
Q Consensus 164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~ 199 (232)
+|+|||+|++|||||++|++++++ +++|..+|+|.
T Consensus 111 ~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 111 KHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred CCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 999999999999999999999998 88999999986
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.5e-42 Score=269.28 Aligned_cols=158 Identities=42% Similarity=0.788 Sum_probs=141.2
Q ss_pred EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
+|.|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++|++|+|+++..|.
T Consensus 7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~-------------------- 66 (171)
T cd01925 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGT-------------------- 66 (171)
T ss_pred EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCc--------------------
Confidence 689999999999999999999999999999999999999999999999999999763332
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l 161 (232)
++.++++..+++|..+.++|+++|+++|++.++++++|||||++++.|+|
T Consensus 67 ------------------------------g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~l 116 (171)
T cd01925 67 ------------------------------GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADEL 116 (171)
T ss_pred ------------------------------cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCccc
Confidence 11234455667777767888899999999999999999999999999999
Q ss_pred CCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249 162 DLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209 (232)
Q Consensus 162 d~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~ 209 (232)
|++|+|||+|+ ++++++++|++++++++++|..+|+|.+|..++.+|.
T Consensus 117 dg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf~ 165 (171)
T cd01925 117 NNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFD 165 (171)
T ss_pred CCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCch
Confidence 99999999999 4578899999999999999999999999999998775
No 14
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.6e-40 Score=263.17 Aligned_cols=148 Identities=44% Similarity=0.772 Sum_probs=125.9
Q ss_pred eCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhh
Q psy8249 7 TDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENF 78 (232)
Q Consensus 7 t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F 78 (232)
++.|+|+|+||.+.||+|++||++||+.++ |+++.||||+++|+||+||+...
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~------------------- 90 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG------------------- 90 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccC-------------------
Confidence 367999999999999999999999998665 99999999999999999985310
Q ss_pred hhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC
Q psy8249 79 LALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH 158 (232)
Q Consensus 79 ~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~ 158 (232)
++.++.++++..+++|.. .++|+.+|+++|++.++++++|||||++.+.
T Consensus 91 ------------------------------~g~g~~~~~g~~f~~e~~-~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~ 139 (186)
T PLN03149 91 ------------------------------DGTGCVSIYGSKFEDENF-IAKHTGPGLLSMANSGPNTNGCQFFITCAKC 139 (186)
T ss_pred ------------------------------CCCCcccccCCccCCccc-ccccCCCCEEEEeeCCCCCcccEEEEECCCC
Confidence 011122333444555544 4678889999999999999999999999999
Q ss_pred CCCCCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249 159 AHLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204 (232)
Q Consensus 159 ~~ld~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l 204 (232)
|+||++|+|||+|+ +|||+|++|++++++++++|..+|+|.+|+.+
T Consensus 140 p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 140 DWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred CccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 99999999999999 79999999999999999999999999999864
No 15
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.7e-40 Score=261.79 Aligned_cols=150 Identities=31% Similarity=0.540 Sum_probs=126.4
Q ss_pred EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
.|.|+|++|+|+|+||++.||+|++||++||+.+|||++.|||++++||+|+|+++.....
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~------------------- 90 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ------------------- 90 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC-------------------
Confidence 5899999999999999999999999999999999999999999999999999986521100
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAH 160 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~ 160 (232)
. .++..+++|..+.+ ++.+|+|+|++.+ +++++|||||++++.++
T Consensus 91 ---~------------------------------~~~~~~~~e~~~~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ 136 (190)
T PRK10903 91 ---K------------------------------KPNPPIKNEADNGL-RNTRGTIAMARTADKDSATSQFFINVADNAF 136 (190)
T ss_pred ---C------------------------------CCCCcccCcccccC-cCCCcEEEeCCCCCCCCcccEEEEECcCccc
Confidence 0 00112333433333 4589999999865 89999999999999999
Q ss_pred CCC-----CccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeeec
Q psy8249 161 LDL-----KYTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAHL 204 (232)
Q Consensus 161 ld~-----~~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~l 204 (232)
||+ +|+|||+|++|||||++|+++++++ +++|..+|+|.+|.++
T Consensus 137 ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 137 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred ccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence 984 8999999999999999999999976 5799999999999765
No 16
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.4e-40 Score=257.36 Aligned_cols=149 Identities=45% Similarity=0.737 Sum_probs=127.4
Q ss_pred EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhc--C------cccceeeeeecceeEEeeCCCcc-ccccceeccccCC
Q psy8249 2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCAS--D------YYNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCEDC 71 (232)
Q Consensus 2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~--~------~y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~~ 71 (232)
++.+ .+++|+|+|+||++.||+||+||++||++ + +|+++.|||++++|++|+||+.. .|.
T Consensus 6 di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~---------- 75 (164)
T cd01926 6 DITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGT---------- 75 (164)
T ss_pred EEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCC----------
Confidence 4445 36899999999999999999999999984 4 79999999999999999998641 111
Q ss_pred CCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceE
Q psy8249 72 PKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQF 151 (232)
Q Consensus 72 P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f 151 (232)
++.++++..+++|.. .++|+.+|+|+|++.++++++|||
T Consensus 76 ----------------------------------------~~~~~~g~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqF 114 (164)
T cd01926 76 ----------------------------------------GGKSIYGEKFPDENF-KLKHTGPGLLSMANAGPNTNGSQF 114 (164)
T ss_pred ----------------------------------------CCCcccCCccCCCCc-cccCCCccEEEeeECCCCCcccEE
Confidence 112233444555543 578888999999999999999999
Q ss_pred EeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249 152 FITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA 202 (232)
Q Consensus 152 ~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 202 (232)
||++++.|+||++|+|||+|++|||||++|++++++ +++|+.+|+|.+||
T Consensus 115 fIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 115 FITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred EEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 999999999999999999999999999999999999 99999999999996
No 17
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=9.6e-40 Score=254.00 Aligned_cols=148 Identities=30% Similarity=0.573 Sum_probs=122.9
Q ss_pred EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhc
Q psy8249 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC 82 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~ 82 (232)
|+|+|++|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+|+++. |. .
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~-~~--------~------------ 60 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GM--------K------------ 60 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC-CC--------C------------
Confidence 67999999999999999999999999999999999999999999999999998531 00 0
Q ss_pred cCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCCC
Q psy8249 83 ASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAHL 161 (232)
Q Consensus 83 ~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~l 161 (232)
. ..++..+++|....+.| .+|+|+|++.+ +++++|||||++.++++|
T Consensus 61 -------~------------------------~~~~~~~~~e~~~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~~~~l 108 (164)
T PRK10791 61 -------Q------------------------KATKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFL 108 (164)
T ss_pred -------c------------------------CCCCCCcCCcccccccC-CCcEEEECCCCCcCCccceEEEEecCchhh
Confidence 0 00012233444434444 79999999875 899999999999998877
Q ss_pred C-------C-CccEEEEEeeccchhhhcccCCCCC----CCCceeeEEEeeeee
Q psy8249 162 D-------L-KYTIFGKVIDGFETLDNLEKLPVNP----NHKPIFFITYAAHAH 203 (232)
Q Consensus 162 d-------~-~~tvfG~VveG~dvl~~I~~~~~~~----~~~P~~~i~I~~~~~ 203 (232)
| + +|+|||+|++|||+|++|+++++++ +++|..+|+|..|.+
T Consensus 109 d~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i 162 (164)
T PRK10791 109 NFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162 (164)
T ss_pred cccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEE
Confidence 6 3 7999999999999999999999876 369999999998854
No 18
>KOG0415|consensus
Probab=100.00 E-value=2.4e-40 Score=274.07 Aligned_cols=166 Identities=43% Similarity=0.680 Sum_probs=151.7
Q ss_pred CEEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhh
Q psy8249 1 MSVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLA 80 (232)
Q Consensus 1 ~~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~ 80 (232)
|+|+|+|++|+++|+||-+++|.+|.|||+||+.+||+.+.||-|+++|.+|.||||..|+..-.+|+...-
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG-------- 72 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYG-------- 72 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeeccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999876655532210
Q ss_pred hccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCC-C
Q psy8249 81 LCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAH-A 159 (232)
Q Consensus 81 l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~-~ 159 (232)
. ....|+.|+.+.++|.+.|++||++++.+..+|||||||+++ .
T Consensus 73 -------~----------------------------q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLd 117 (479)
T KOG0415|consen 73 -------E----------------------------QARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLD 117 (479)
T ss_pred -------c----------------------------cchhhhhhhcccccccccceEEeecCCcccccceEEEEcccccc
Confidence 0 023467899999999999999999999999999999999984 7
Q ss_pred CCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc
Q psy8249 160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209 (232)
Q Consensus 160 ~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~ 209 (232)
.||++|+|||+|+||||+|.+|+...++++++|+.+|+|.+.-+||+||.
T Consensus 118 yLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPFd 167 (479)
T KOG0415|consen 118 YLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPFD 167 (479)
T ss_pred ccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCCC
Confidence 89999999999999999999999999999999999999999999999875
No 19
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.1e-39 Score=266.20 Aligned_cols=155 Identities=30% Similarity=0.435 Sum_probs=130.4
Q ss_pred EEEEEeC-----CeeEEEEeecCCCchhHHhHHHhhhcCc-----------ccceeeeeecce-eEEeeCCCccccccce
Q psy8249 2 SVSLHTD-----VGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKG-FIVQTGDPTHTGDIKI 64 (232)
Q Consensus 2 ~v~~~t~-----~G~i~i~L~~~~~p~~~~nf~~l~~~~~-----------y~~~~f~rvi~~-f~iq~Gd~t~~G~i~i 64 (232)
.|.|+|+ .|+|+|+||.+.||+|++||++||++.. |+++.|||++++ ||||+||+++.|
T Consensus 54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~g---- 129 (249)
T PTZ00221 54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSFN---- 129 (249)
T ss_pred EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCCC----
Confidence 3566665 5679999999999999999999997542 888888888864 788888754211
Q ss_pred eccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCC
Q psy8249 65 ELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGP 144 (232)
Q Consensus 65 ~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~ 144 (232)
.+++|..+++|.. .++|+++|+|+|++.++
T Consensus 130 -------------------------------------------------~s~~G~~f~dE~~-~~~h~~~G~LsMan~Gp 159 (249)
T PTZ00221 130 -------------------------------------------------VSSTGTPIADEGY-RHRHTERGLLTMISEGP 159 (249)
T ss_pred -------------------------------------------------ccCCCCcccCccc-cccCCCCCEEEeCcCCC
Confidence 1223445666654 57888999999999999
Q ss_pred CcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcc
Q psy8249 145 NTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTI 210 (232)
Q Consensus 145 ~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~ 210 (232)
++++||||||+.++|+||++|+|||+|++|||+|++|++++++.+++|..+|+|.+|++|+++-..
T Consensus 160 ntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 160 HTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCC
Confidence 999999999999999999999999999999999999999999889999999999999999986443
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.3e-39 Score=257.80 Aligned_cols=151 Identities=46% Similarity=0.718 Sum_probs=127.5
Q ss_pred EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhh---------cCcccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249 2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCA---------SDYYNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED 70 (232)
Q Consensus 2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~---------~~~y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~ 70 (232)
.+.+ .|+.|+|+|+||.+.||+|++||++||+ .++|+++.|||++++|++|+||++. .|.
T Consensus 21 di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~--------- 91 (183)
T PTZ00060 21 DISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT--------- 91 (183)
T ss_pred EEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCC---------
Confidence 4455 4578999999999999999999999996 5689999999999999999998652 111
Q ss_pred CCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccce
Q psy8249 71 CPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQ 150 (232)
Q Consensus 71 ~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~ 150 (232)
++.++++..+++|.. .+.|+.+|+++|++.++++++||
T Consensus 92 -----------------------------------------~g~~~~g~~~~~e~~-~~~h~~~G~lsma~~g~~~~~sq 129 (183)
T PTZ00060 92 -----------------------------------------GGESIYGRKFTDENF-KLKHDQPGLLSMANAGPNTNGSQ 129 (183)
T ss_pred -----------------------------------------CCCcccccccCCccc-cccCCCCCEEEeccCCCCCCcce
Confidence 112233444455533 56788899999999999999999
Q ss_pred EEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeec
Q psy8249 151 FFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL 204 (232)
Q Consensus 151 f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~l 204 (232)
|||++++.|+||++|+|||+|++|||||++|++.++. +++|..+|+|.+|++|
T Consensus 130 FfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 130 FFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL 182 (183)
T ss_pred EEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence 9999999999999999999999999999999998875 7899999999999987
No 21
>KOG0879|consensus
Probab=100.00 E-value=1.1e-39 Score=236.14 Aligned_cols=156 Identities=42% Similarity=0.694 Sum_probs=147.7
Q ss_pred eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCC-CCCCCCCccCC
Q psy8249 48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTGKGGNSIWG 118 (232)
Q Consensus 48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~-~~~~~~~~~~~ 118 (232)
.|+....+....|++.++|+.+..|+|++||++.|++.+ |+++.|||++++|||||||.. +.+++..++|+
T Consensus 13 VF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~ 92 (177)
T KOG0879|consen 13 VFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYG 92 (177)
T ss_pred EEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcC
Confidence 477777778899999999999999999999999999875 999999999999999999976 56788899999
Q ss_pred CCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEE
Q psy8249 119 KKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITY 198 (232)
Q Consensus 119 ~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I 198 (232)
.++++|+. .++|+.+|++|||++++++++.|||||...+.+||++|+|||+|++|+.++++|+++++..+++|+.++.|
T Consensus 93 ~~F~DENF-tlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i 171 (177)
T KOG0879|consen 93 STFPDENF-TLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVI 171 (177)
T ss_pred CCCCCcce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEE
Confidence 99999998 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeec
Q psy8249 199 AAHAHL 204 (232)
Q Consensus 199 ~~~~~l 204 (232)
..|+.+
T Consensus 172 ~qCGem 177 (177)
T KOG0879|consen 172 VQCGEM 177 (177)
T ss_pred eecccC
Confidence 999853
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.9e-38 Score=245.08 Aligned_cols=144 Identities=33% Similarity=0.565 Sum_probs=119.7
Q ss_pred EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249 4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA 83 (232)
Q Consensus 4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~ 83 (232)
.|+|+.|+|+|+||++.||+|++||++||+.+||+++.||||+++||+|+|+++..+.-
T Consensus 1 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--------------------- 59 (155)
T cd01920 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--------------------- 59 (155)
T ss_pred CcEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---------------------
Confidence 37999999999999999999999999999999999999999999999999987632210
Q ss_pred CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC-CCcccceEEeeccCCCCCC
Q psy8249 84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG-PNTNASQFFITYAAHAHLD 162 (232)
Q Consensus 84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~-~~~~~s~f~itl~~~~~ld 162 (232)
.. ++..+.+|.... .++.+|+|+||+.+ +++++|||||+++++|+||
T Consensus 60 -~~------------------------------~~~~~~~e~~~~-~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld 107 (155)
T cd01920 60 -KE------------------------------TLKPIKNEAGNG-LSNTRGTIAMARTNAPDSATSQFFINLKDNASLD 107 (155)
T ss_pred -cc------------------------------cCCcccCccccc-ccCCceEEEECCCCCCCCccceEEEECCCchhcC
Confidence 00 011222333322 34589999999865 8999999999999999999
Q ss_pred C-----CccEEEEEeeccchhhhcccCCCCCC----CCceeeEEEee
Q psy8249 163 L-----KYTIFGKVIDGFETLDNLEKLPVNPN----HKPIFFITYAA 200 (232)
Q Consensus 163 ~-----~~tvfG~VveG~dvl~~I~~~~~~~~----~~P~~~i~I~~ 200 (232)
+ +|+|||+|++|||||++|++++++++ ++|..+|+|..
T Consensus 108 ~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 108 YQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred CcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 5 79999999999999999999999874 68988888864
No 23
>KOG0885|consensus
Probab=100.00 E-value=3.7e-38 Score=262.60 Aligned_cols=165 Identities=41% Similarity=0.733 Sum_probs=152.8
Q ss_pred EEEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 2 SVSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 2 ~v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
.|+++|+.|+|.|+||+++||++|.||++||-.|||+++.|||++++|++|||||+.
T Consensus 14 kvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~----------------------- 70 (439)
T KOG0885|consen 14 KVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTG----------------------- 70 (439)
T ss_pred eEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCC-----------------------
Confidence 589999999999999999999999999999999999999999999999999999863
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~l 161 (232)
++.++.||||..+.+|.+++|+.+++|+++||+.+.+.++||||+||+++|+|
T Consensus 71 ---------------------------~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el 123 (439)
T KOG0885|consen 71 ---------------------------TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPEL 123 (439)
T ss_pred ---------------------------CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHh
Confidence 34567789999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEe-eccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCc-ccceeec
Q psy8249 162 DLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT-IFGKVID 216 (232)
Q Consensus 162 d~~~tvfG~Vv-eG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~-~fg~V~~ 216 (232)
++++++||+|+ +-.-.+-+|..+.++.+.||..+-.|.+|.++..+|. +++|++.
T Consensus 124 ~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npFdDI~pr~~r 180 (439)
T KOG0885|consen 124 NNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPFDDIKPRELR 180 (439)
T ss_pred cccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCchhhcchhhhh
Confidence 99999999999 6788889999999999999999999999999999875 5565543
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=6.3e-37 Score=235.06 Aligned_cols=145 Identities=49% Similarity=0.746 Sum_probs=128.6
Q ss_pred EEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhcc
Q psy8249 4 SLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA 83 (232)
Q Consensus 4 ~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~ 83 (232)
.++|+.|+|+|+||++.||++++||++||+.++|+++.|||++++|++|+|+++..+...
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-------------------- 60 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-------------------- 60 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC--------------------
Confidence 379999999999999999999999999999999999999999999999999976332110
Q ss_pred CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCC
Q psy8249 84 SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDL 163 (232)
Q Consensus 84 ~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~ 163 (232)
+.++..+++|..+...|+++|+++|++.+++++++||||++.+.++||+
T Consensus 61 -------------------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~ 109 (146)
T cd00317 61 -------------------------------SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDG 109 (146)
T ss_pred -------------------------------CcCCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCC
Confidence 1113456667776665789999999999999999999999999999999
Q ss_pred CccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249 164 KYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199 (232)
Q Consensus 164 ~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~ 199 (232)
+|+|||+|++||++|++|++.+++++++|..+|+|.
T Consensus 110 ~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 110 KHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred CceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 999999999999999999999999999999999986
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=7e-36 Score=231.43 Aligned_cols=151 Identities=46% Similarity=0.810 Sum_probs=127.7
Q ss_pred EEEEeC-CeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhh
Q psy8249 3 VSLHTD-VGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLAL 81 (232)
Q Consensus 3 v~~~t~-~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l 81 (232)
|.|+|+ +|+|+|+||++.||++++||++||+.++|+++.|||+++++++|+|+++..+. ....
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~-----~~~~----------- 65 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGG-----YGRE----------- 65 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSS-----STSE-----------
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCC-----cccc-----------
Confidence 689997 99999999999999999999999999999999999999999999999764432 0000
Q ss_pred ccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccC--CCcccceEEeeccCCC
Q psy8249 82 CASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG--PNTNASQFFITYAAHA 159 (232)
Q Consensus 82 ~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~--~~~~~s~f~itl~~~~ 159 (232)
. ...+..+++|......++.+|+++|++.+ +++++|||||++.+.|
T Consensus 66 ---------~-----------------------~~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~ 113 (155)
T PF00160_consen 66 ---------D-----------------------STGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAP 113 (155)
T ss_dssp ---------E-----------------------BTTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGG
T ss_pred ---------c-----------------------ccCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCC
Confidence 0 00122355666433344499999999875 7889999999999999
Q ss_pred CCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249 160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH 203 (232)
Q Consensus 160 ~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 203 (232)
+||++|+|||+|++||++|++|++.++++ +|..+|+|.+|++
T Consensus 114 ~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 114 HLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp GGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 99999999999999999999999998887 9999999999985
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=7.8e-36 Score=234.48 Aligned_cols=150 Identities=35% Similarity=0.507 Sum_probs=110.4
Q ss_pred EeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC
Q psy8249 6 HTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD 85 (232)
Q Consensus 6 ~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~ 85 (232)
.|++|+|+|+||++.||.||+||++||+.+||+++.||||+++||+|+||++..+.... .|.+.. +
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~------~~~~~~-~------- 68 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFP------DPETGK-S------- 68 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcc------cccccc-c-------
Confidence 58999999999999999999999999999999999999999999999999876543311 010000 0
Q ss_pred CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCc----ccccccccccccceEEecccC--CCcccceEEeecc---
Q psy8249 86 YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE----DEFKETLKHSERGIVSMANNG--PNTNASQFFITYA--- 156 (232)
Q Consensus 86 ~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~----~e~~~~l~~~~~g~v~~~~~~--~~~~~s~f~itl~--- 156 (232)
|.+|--+ +. ...+.++++..+. .+..+.+.|+.+|+++|++++ +++++|||||+++
T Consensus 69 --------~~~p~e~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~ 133 (176)
T cd01924 69 --------RTIPLEI-KP------EGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNE 133 (176)
T ss_pred --------cccccee-cc------cCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEecccc
Confidence 0001000 00 0001112222111 122335677799999999987 6999999999998
Q ss_pred ----CCCCCCCCccEEEEEeeccchhhhcccC
Q psy8249 157 ----AHAHLDLKYTIFGKVIDGFETLDNLEKL 184 (232)
Q Consensus 157 ----~~~~ld~~~tvfG~VveG~dvl~~I~~~ 184 (232)
+.|+||++|+|||+|++|||||++|+..
T Consensus 134 ~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g 165 (176)
T cd01924 134 LTPSRNNVLDGRYAVFGYVTDGLDILRELKVG 165 (176)
T ss_pred ccCCCCCccCCCceEEEEEecCHHHHHhhcCC
Confidence 7899999999999999999999999764
No 27
>KOG0111|consensus
Probab=100.00 E-value=4.3e-35 Score=229.09 Aligned_cols=156 Identities=38% Similarity=0.579 Sum_probs=142.6
Q ss_pred ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEEeecCcEEEcCCCC-CCCCCCCccCCCCCc
Q psy8249 47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHRNIKGFIVQTGDPT-HTGKGGNSIWGKKFE 122 (232)
Q Consensus 47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~rv~~~~~vq~G~~~-~~~~~~~~~~~~~~~ 122 (232)
+.|+..-......|++++.|..+..|.+++||..||++. -|.|+.|||++|.||+||||.+ ++++++.|+||+++.
T Consensus 138 qv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfd 217 (298)
T KOG0111|consen 138 QVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFD 217 (298)
T ss_pred HhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccc
Confidence 334433333456799999999999999999999999985 3999999999999999999998 678999999999999
Q ss_pred ccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249 123 DEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA 202 (232)
Q Consensus 123 ~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 202 (232)
+|+. .|+|+.+|++||+++++++++|||||++....|||++|+|||.|++||+|++++++..+. .++|...|.|..|+
T Consensus 218 denf-~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~cg 295 (298)
T KOG0111|consen 218 DENF-TLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVECG 295 (298)
T ss_pred ccce-eeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEecc
Confidence 9998 899999999999999999999999999999999999999999999999999999999776 89999999999998
Q ss_pred ec
Q psy8249 203 HL 204 (232)
Q Consensus 203 ~l 204 (232)
.+
T Consensus 296 e~ 297 (298)
T KOG0111|consen 296 EI 297 (298)
T ss_pred cc
Confidence 76
No 28
>KOG0865|consensus
Probab=99.95 E-value=1.7e-28 Score=188.78 Aligned_cols=156 Identities=47% Similarity=0.711 Sum_probs=141.3
Q ss_pred ceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC---CCCCceeEE---eecCcEEEcCCCC-CCCCCCCccCCC
Q psy8249 47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHR---NIKGFIVQTGDPT-HTGKGGNSIWGK 119 (232)
Q Consensus 47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~---~y~g~~~~r---v~~~~~vq~G~~~-~~~~~~~~~~~~ 119 (232)
+-|+.+.-+.+..|++.++|+.+..|++++||.+||++. -|.++.||| ..+++|+|+||.+ ++++++.|+|+.
T Consensus 5 ~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~e 84 (167)
T KOG0865|consen 5 TVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGE 84 (167)
T ss_pred eeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEeccc
Confidence 446677777889999999999999999999999999964 389999999 3457999999987 678999999999
Q ss_pred CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249 120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199 (232)
Q Consensus 120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~ 199 (232)
++++|+. .++|..+|+++||+.+|++++|||||++....|||++|+|||+|.+||+++++|+..... ++++...|+|.
T Consensus 85 kF~DenF-ilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~i~ 162 (167)
T KOG0865|consen 85 KFDDENF-ILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKITIA 162 (167)
T ss_pred ccCCcCc-EEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCc-CCcccccEEEe
Confidence 9999988 889999999999999999999999999999999999999999999999999999996544 88999999999
Q ss_pred eeeec
Q psy8249 200 AHAHL 204 (232)
Q Consensus 200 ~~~~l 204 (232)
+|+.|
T Consensus 163 dcg~l 167 (167)
T KOG0865|consen 163 DCGQL 167 (167)
T ss_pred cCCcC
Confidence 99875
No 29
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.91 E-value=2.6e-24 Score=168.12 Aligned_cols=139 Identities=37% Similarity=0.665 Sum_probs=100.5
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++|+.+.+|++++||++||+.++|+++.|||+++++++|+|++..++.++.++++...... .....
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~-~~~~~------ 76 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQ-ARFFE------ 76 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCccccccccccc-CcccC------
Confidence 78999999999999999999999999999999999999999999999998876666655543211100 00000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEee-eeecCCCCcccceee
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAA-HAHLDLKYTIFGKVI 215 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~-~~~ld~~~~~fg~V~ 215 (232)
.++ .+. ..|..-|.|. +++...+ .+.-.++|+..+ +++||+.|++||||+
T Consensus 77 ------------~e~------~~~--~~h~~~G~l~--------ma~~~~~-~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi 127 (166)
T cd01921 77 ------------PEI------LPL--LKHSKKGTVS--------MVNAGDN-LNGSQFYITLGENLDYLDGKHTVFGQVV 127 (166)
T ss_pred ------------ccc------CCc--cccCCceEEE--------EeECCCC-CccceEEEEcCCCCcccCCCccEEEEEE
Confidence 000 000 0122335552 2332222 345567888864 899999999999999
Q ss_pred cchhhhhhhccCcCCC
Q psy8249 216 DGLETLDNLEKLPVNP 231 (232)
Q Consensus 216 ~g~~v~~~i~~~~~~~ 231 (232)
+|||||++|+++++++
T Consensus 128 ~G~dvv~~I~~~~~~~ 143 (166)
T cd01921 128 EGFDVLEKINDAIVDD 143 (166)
T ss_pred cCHHHHHHHHcCCCCC
Confidence 9999999999999875
No 30
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-23 Score=160.05 Aligned_cols=133 Identities=34% Similarity=0.584 Sum_probs=99.7
Q ss_pred CccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccc
Q psy8249 56 PTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERG 135 (232)
Q Consensus 56 ~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g 135 (232)
.|+.|+|+++||++.+|+|++||++||+.++|+|+.|||++++||+||||+..+ ...+..- ...
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~-----~g~gg~~-----~~f------ 68 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGG-----DGTGGPG-----PPF------ 68 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCC-----CCCCCCC-----CCC------
Confidence 478999999999999999999999999999999999999999999999998752 0001110 000
Q ss_pred eEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceee
Q psy8249 136 IVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVI 215 (232)
Q Consensus 136 ~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~ 215 (232)
++ +++-.+. +. -.-|.+ +|++......+...++|...+.++||+.|+|||+|+
T Consensus 69 --------~~----E~~~~~~----~~---~~~G~l--------sMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv 121 (158)
T COG0652 69 --------KD----ENFALNG----DR---HKRGTL--------SMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV 121 (158)
T ss_pred --------cc----ccccccc----cc---CCcceE--------eEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe
Confidence 11 1110000 00 112333 566666444666779999999999999999999999
Q ss_pred cchhhhhhhccCcCCC
Q psy8249 216 DGLETLDNLEKLPVNP 231 (232)
Q Consensus 216 ~g~~v~~~i~~~~~~~ 231 (232)
+||||||+|++..++.
T Consensus 122 ~GmdvvdkI~~~~~~~ 137 (158)
T COG0652 122 EGMDVVDKIKNGDTDD 137 (158)
T ss_pred hhHHHHHHHHcCCccC
Confidence 9999999999988764
No 31
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.88 E-value=9.5e-23 Score=160.29 Aligned_cols=153 Identities=29% Similarity=0.468 Sum_probs=98.2
Q ss_pred CCCccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCc-cCC--CCCccccccccc
Q psy8249 54 GDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNS-IWG--KKFEDEFKETLK 130 (232)
Q Consensus 54 Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~-~~~--~~~~~e~~~~l~ 130 (232)
|..|+.|+++++|+++.+|+++.||++||+.++|+++.|||+++++++|+|++...+.+... ..+ ..++.|....
T Consensus 1 ~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~-- 78 (176)
T cd01924 1 GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPE-- 78 (176)
T ss_pred CCccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceeccc--
Confidence 45689999999999999999999999999999999999999999999999998755333210 000 1111111100
Q ss_pred ccccceEEecccCCCcccceEEeecc-CCCCCCCCccEEEEEeeccchhhhcccCCC-CCCCCceeeEEEe-------ee
Q psy8249 131 HSERGIVSMANNGPNTNASQFFITYA-AHAHLDLKYTIFGKVIDGFETLDNLEKLPV-NPNHKPIFFITYA-------AH 201 (232)
Q Consensus 131 ~~~~g~v~~~~~~~~~~~s~f~itl~-~~~~ld~~~tvfG~VveG~dvl~~I~~~~~-~~~~~P~~~i~I~-------~~ 201 (232)
..+ .+ ..+..|- ..+ +.......+..-|.| +|++..- ...+.-.++|++. .+
T Consensus 79 --~~~-------~~-~~~~~~~-~~~~~~~~~~~~~~~~G~l--------aMa~~~~~~ns~~SQFfI~~~~~~~~~~~~ 139 (176)
T cd01924 79 --GQK-------QP-VYGKTLE-EAGRYDEQPVLPFNAFGAI--------AMARTEFDPNSASSQFFFLLKDNELTPSRN 139 (176)
T ss_pred --CCC-------CC-ccCcccc-cccccccccccccCCCCeE--------EEccCCCCCCCccceEEEEeccccccCCCC
Confidence 000 00 0000000 000 000011122233555 3444332 1345567788888 79
Q ss_pred eecCCCCcccceeecchhhhhhhccC
Q psy8249 202 AHLDLKYTIFGKVIDGLETLDNLEKL 227 (232)
Q Consensus 202 ~~ld~~~~~fg~V~~g~~v~~~i~~~ 227 (232)
++||+.|+|||+|++|||||++|+..
T Consensus 140 ~~Ldg~ytVFG~VveG~dvl~~I~~g 165 (176)
T cd01924 140 NVLDGRYAVFGYVTDGLDILRELKVG 165 (176)
T ss_pred CccCCCceEEEEEecCHHHHHhhcCC
Confidence 99999999999999999999999765
No 32
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=99.88 E-value=1.2e-22 Score=155.77 Aligned_cols=132 Identities=38% Similarity=0.642 Sum_probs=94.8
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||.+.+|++++||++||++++|+++.|||+++++++|+|++... +. +.. ......+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~---g~---g~~--~~~~~~~------- 68 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGD---GT---GGE--SIWGKEF------- 68 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCC---CC---CCC--cccCCcc-------
Confidence 78999999999999999999999999999999999999999999999987521 11 100 0000000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
++ ++ .+.+ .|..-|.|. +++... ..+...++|+..++++||+.|++||+|++
T Consensus 69 -------~~----e~------~~~~--~h~~~G~l~--------ma~~~~-~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~ 120 (148)
T cd01927 69 -------ED----EF------SPSL--KHDRPYTLS--------MANAGP-NTNGSQFFITTVATPWLDNKHTVFGRVVK 120 (148)
T ss_pred -------cc----cc------cccc--CcCCCeEEE--------EeeCCC-CCCCceEEEEcCCCcccCCCceEEEEEEc
Confidence 00 00 0011 122224442 222222 24456789999999999999999999999
Q ss_pred chhhhhhhccCcCCC
Q psy8249 217 GLETLDNLEKLPVNP 231 (232)
Q Consensus 217 g~~v~~~i~~~~~~~ 231 (232)
|||||++|+++++|+
T Consensus 121 G~dvl~~I~~~~~~~ 135 (148)
T cd01927 121 GMDVVQRIENVKTDK 135 (148)
T ss_pred CHHHHHHHHcCCCCC
Confidence 999999999999875
No 33
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=99.87 E-value=2.3e-22 Score=153.75 Aligned_cols=131 Identities=39% Similarity=0.662 Sum_probs=94.0
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|+|++... +. .+..+... .
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~---g~--~~~~~~~~---~-------- 67 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGT---GR--GGASIYGK---K-------- 67 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCC---CC--CcccccCC---C--------
Confidence 78999999999999999999999999999999999999999999999987521 10 00000000 0
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
+.+.....-.|..-|.|. +++.. ...+.-.++|+...+++||+.|++||+|++
T Consensus 68 ------------------~~~e~~~~~~h~~~G~l~--------ma~~~-~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~ 120 (146)
T cd01922 68 ------------------FEDEIHPELKHTGAGILS--------MANAG-PNTNGSQFFITLAPTPWLDGKHTIFGRVSK 120 (146)
T ss_pred ------------------cccccccCcCCCCCeEEE--------EeeCC-CCCCccEEEEEcCCCcccCCCCCEEEEEEc
Confidence 000000001122235542 22222 223455688999999999999999999999
Q ss_pred chhhhhhhccCcCC
Q psy8249 217 GLETLDNLEKLPVN 230 (232)
Q Consensus 217 g~~v~~~i~~~~~~ 230 (232)
|||||++|++++++
T Consensus 121 G~dvl~~I~~~~~~ 134 (146)
T cd01922 121 GMKVIENMVEVQTQ 134 (146)
T ss_pred CHHHHHHHHhCCCC
Confidence 99999999999886
No 34
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=99.87 E-value=2.7e-22 Score=154.57 Aligned_cols=132 Identities=64% Similarity=1.070 Sum_probs=94.8
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++|+++.+|++++||++||++++|+++.|||+++++++|+|++..+ +. +.. .. .|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~---g~---g~~-------~~----~~~ 69 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGT---GK---GGE-------SI----WGK 69 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCC---CC---CCC-------cc----CCC
Confidence 78999999999999999999999999999999999999999999999987521 11 100 00 000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
.-++ ++ .+. ..|..-|.|. +++...+ .+.-.++|++.++++||+.|++||+|++
T Consensus 70 -----~~~~----e~------~~~--~~~~~~G~v~--------ma~~~~~-~~~SqFfI~~~~~~~Ld~~~tvFG~V~~ 123 (153)
T cd01928 70 -----KFED----EF------RET--LKHDSRGVVS--------MANNGPN-TNGSQFFITYAKQPHLDGKYTVFGKVID 123 (153)
T ss_pred -----cccc----cc------ccC--CCcCCCcEEE--------EeeCCCC-CcccEEEEEeCCCcccCCCceEEEEEEe
Confidence 0000 00 000 0122234442 2222222 3455789999999999999999999999
Q ss_pred chhhhhhhccCcCCC
Q psy8249 217 GLETLDNLEKLPVNP 231 (232)
Q Consensus 217 g~~v~~~i~~~~~~~ 231 (232)
|||||++|+++++|+
T Consensus 124 G~dvl~~I~~~~~~~ 138 (153)
T cd01928 124 GFETLDTLEKLPVDK 138 (153)
T ss_pred CHHHHHHHHcCCCCC
Confidence 999999999999864
No 35
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.86 E-value=1.2e-21 Score=151.36 Aligned_cols=130 Identities=32% Similarity=0.559 Sum_probs=93.7
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++... ... ......+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~--------~~~--~~~~~~~~------ 67 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPD--------LAQ--KETLKPIK------ 67 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCC--------CCc--cccCCccc------
Confidence 78999999999999999999999999999999999999999999999987531 000 00000000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC-----CCccc
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL-----KYTIF 211 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~-----~~~~f 211 (232)
+ + +. ...+-.-|.|. |++..-...+.-.++|+..++++||. .|++|
T Consensus 68 --------~----e--------~~-~~~~~~~G~v~--------ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvF 118 (155)
T cd01920 68 --------N----E--------AG-NGLSNTRGTIA--------MARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVF 118 (155)
T ss_pred --------C----c--------cc-ccccCCceEEE--------ECCCCCCCCccceEEEECCCchhcCCcccCCCccEE
Confidence 0 0 00 00011225552 22221122445668999999999995 79999
Q ss_pred ceeecchhhhhhhccCcCCC
Q psy8249 212 GKVIDGLETLDNLEKLPVNP 231 (232)
Q Consensus 212 g~V~~g~~v~~~i~~~~~~~ 231 (232)
|+|++|||||++|+++++++
T Consensus 119 G~V~eG~dvl~~I~~~~~~~ 138 (155)
T cd01920 119 GEVTEGMDVVDKIAGVETYS 138 (155)
T ss_pred EEEecCHHHHHHHHcCCccC
Confidence 99999999999999999975
No 36
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=99.86 E-value=1.1e-21 Score=152.25 Aligned_cols=132 Identities=41% Similarity=0.781 Sum_probs=94.1
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++..+ +. -+..+... .+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~---g~--~~~~~~g~---~~------- 70 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGT---GR--GGESIWGK---PF------- 70 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCC---CC--CCccccCC---cc-------
Confidence 78999999999999999999999999999999999999999999999987421 11 00000000 00
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
++ ++ .+. ..|..-|.|. +.+... ..+.-.++|+...+++||+.|++||+|++
T Consensus 71 -------~~----E~------~~~--~~h~~~G~v~--------ma~~~~-~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~ 122 (159)
T cd01923 71 -------KD----EF------KPN--LSHDGRGVLS--------MANSGP-NTNGSQFFITYRSCKHLDGKHTVFGRVVG 122 (159)
T ss_pred -------Cc----cc------ccC--cCcCCCcEEE--------EeeCCC-CCcccEEEEECCCCcccCCCccEEEEEEc
Confidence 00 00 000 0122234442 222221 23456688999999999999999999999
Q ss_pred chhhhhhhccCcCCC
Q psy8249 217 GLETLDNLEKLPVNP 231 (232)
Q Consensus 217 g~~v~~~i~~~~~~~ 231 (232)
|||||++|+++++++
T Consensus 123 G~~vl~~I~~~~~~~ 137 (159)
T cd01923 123 GLETLEAMENVPDPG 137 (159)
T ss_pred CHHHHHHHHcCCCCC
Confidence 999999999998864
No 37
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.85 E-value=3.2e-21 Score=150.06 Aligned_cols=130 Identities=29% Similarity=0.561 Sum_probs=92.2
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|||++.. +.... . .+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~---------~~~~~-~---------~~- 65 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP---------GMKQK-A---------TK- 65 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCC---------CCCcC-C---------CC-
Confidence 7899999999999999999999999999999999999999999999997531 11000 0 00
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecC-------C-CC
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLD-------L-KY 208 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld-------~-~~ 208 (232)
..| .+.......+ .-|.|. +++..-...+.-.++|+..+|.+|| + .|
T Consensus 66 ------------~~~----~~e~~~~~~~-~~G~ls--------ma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~ 120 (164)
T PRK10791 66 ------------EPI----KNEANNGLKN-TRGTLA--------MARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120 (164)
T ss_pred ------------CCc----CCcccccccC-CCcEEE--------ECCCCCcCCccceEEEEecCchhhcccccccCCCCc
Confidence 000 0000000111 125552 3332212244567889999998886 2 69
Q ss_pred cccceeecchhhhhhhccCcCCC
Q psy8249 209 TIFGKVIDGLETLDNLEKLPVNP 231 (232)
Q Consensus 209 ~~fg~V~~g~~v~~~i~~~~~~~ 231 (232)
++||+|++|||||++|+++++++
T Consensus 121 tvFG~V~eG~dvl~~I~~~~~~~ 143 (164)
T PRK10791 121 CVFAEVVEGMDVVDKIKGVATGR 143 (164)
T ss_pred cEEEEEecCHHHHHHHHcCcCCC
Confidence 99999999999999999999864
No 38
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.84 E-value=4.6e-21 Score=152.02 Aligned_cols=141 Identities=38% Similarity=0.603 Sum_probs=98.0
Q ss_pred eeEEeeCCCccccccceeccccCCCCcchhhhhhccCCC--------CCCceeEEeecCcEEEcCCCCCCCCCCCccCCC
Q psy8249 48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK 119 (232)
Q Consensus 48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~--------y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~ 119 (232)
-|+...-+..+.|+++|+||.+.+|++++||++||++++ |+++.|||+++++++|+|++ ..+. +
T Consensus 21 v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~----~~~~---g- 92 (186)
T PLN03149 21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDF----LKGD---G- 92 (186)
T ss_pred EEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCc----ccCC---C-
Confidence 366666666789999999999999999999999998754 99999999999999999863 0000 0
Q ss_pred CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249 120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199 (232)
Q Consensus 120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~ 199 (232)
.|-.+. .+..| .+. .....|..-|.|. +.+.. ...+...++|++.
T Consensus 93 --------------~g~~~~-------~g~~f----~~e-~~~~~h~~~G~ls--------ma~~g-~~s~~sqFfIt~~ 137 (186)
T PLN03149 93 --------------TGCVSI-------YGSKF----EDE-NFIAKHTGPGLLS--------MANSG-PNTNGCQFFITCA 137 (186)
T ss_pred --------------CCcccc-------cCCcc----CCc-ccccccCCCCEEE--------EeeCC-CCCcccEEEEECC
Confidence 000000 00000 000 0011122234442 22222 2345677899999
Q ss_pred eeeecCCCCcccceee-cchhhhhhhccCcCCC
Q psy8249 200 AHAHLDLKYTIFGKVI-DGLETLDNLEKLPVNP 231 (232)
Q Consensus 200 ~~~~ld~~~~~fg~V~-~g~~v~~~i~~~~~~~ 231 (232)
.+++||+.|++||+|+ +|||||++|+++++++
T Consensus 138 ~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~ 170 (186)
T PLN03149 138 KCDWLDNKHVVFGRVLGDGLLVVRKIENVATGP 170 (186)
T ss_pred CCCccCCCceEEEEEEECcHHHHHHHHcCCCCC
Confidence 9999999999999999 7999999999999964
No 39
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.84 E-value=6.5e-21 Score=151.56 Aligned_cols=130 Identities=29% Similarity=0.551 Sum_probs=93.8
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||++.+|++++||++||+.++|+++.|||+++++++|+|++... . +.. .....+.+
T Consensus 35 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~------~-~~~---~~~~~~~~----- 99 (190)
T PRK10903 35 TSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ------M-QQK---KPNPPIKN----- 99 (190)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCC------C-CCC---CCCCcccC-----
Confidence 78999999999999999999999999999999999999999999999976521 0 000 00000000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCC-----CCccc
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDL-----KYTIF 211 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~-----~~~~f 211 (232)
++ .+ ..+..-|.|. +++....+.+.-.++|+...+++||. .|++|
T Consensus 100 -------------e~------~~---~l~~~~G~la--------ma~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvF 149 (190)
T PRK10903 100 -------------EA------DN---GLRNTRGTIA--------MARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 149 (190)
T ss_pred -------------cc------cc---cCcCCCcEEE--------eCCCCCCCCcccEEEEECcCcccccCCccCCCccEE
Confidence 00 00 0011235552 33222122445678999999999985 89999
Q ss_pred ceeecchhhhhhhccCcCCC
Q psy8249 212 GKVIDGLETLDNLEKLPVNP 231 (232)
Q Consensus 212 g~V~~g~~v~~~i~~~~~~~ 231 (232)
|+|++|||||++|+++++++
T Consensus 150 G~V~eG~dvl~~I~~~~~~~ 169 (190)
T PRK10903 150 GKVVKGMDVADKISQVPTHD 169 (190)
T ss_pred EEEecCHHHHHHHHcCCCCC
Confidence 99999999999999999864
No 40
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.84 E-value=2.1e-20 Score=145.88 Aligned_cols=140 Identities=34% Similarity=0.554 Sum_probs=98.6
Q ss_pred eeEEeeCCCccccccceeccccCCCCcchhhhhhccC--C------CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCC
Q psy8249 48 GFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCAS--D------YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK 119 (232)
Q Consensus 48 ~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~--~------~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~ 119 (232)
.|+...-+.++.|+++|+|+.+.+|++++||++||++ + +|+++.|||+++++++|+|++... .+. +.
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~--~g~---~~ 77 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRG--NGT---GG 77 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCC--CCC---CC
Confidence 3566555668899999999999999999999999984 3 799999999999999999986521 100 00
Q ss_pred CCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe
Q psy8249 120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199 (232)
Q Consensus 120 ~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~ 199 (232)
+ .+. | . .| .+. .....|..-|.|. +++.. .......++|+..
T Consensus 78 ----~---~~~----g-----~--------~~----~~e-~~~~~h~~~G~ls--------ma~~~-~~~~~sqFfIt~~ 119 (164)
T cd01926 78 ----K---SIY----G-----E--------KF----PDE-NFKLKHTGPGLLS--------MANAG-PNTNGSQFFITTV 119 (164)
T ss_pred ----C---ccc----C-----C--------cc----CCC-CccccCCCccEEE--------eeECC-CCCcccEEEEEeC
Confidence 0 000 0 0 00 000 0011222334442 22222 2245577899999
Q ss_pred eeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249 200 AHAHLDLKYTIFGKVIDGLETLDNLEKLPVN 230 (232)
Q Consensus 200 ~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~ 230 (232)
.+++||+.|++||+|++|||||++|++++++
T Consensus 120 ~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~ 150 (164)
T cd01926 120 KTPWLDGKHVVFGKVVEGMDVVKKIENVGSG 150 (164)
T ss_pred CCCccCCcccEEEEEEEcHHHHHHHHcCCCC
Confidence 9999999999999999999999999999986
No 41
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.83 E-value=1.3e-20 Score=144.45 Aligned_cols=131 Identities=36% Similarity=0.587 Sum_probs=93.9
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++|+|+.+.+|++++||++||++++|+++.|||+++++++|+|++... +.. .......+..
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~--------~~~-~~~~~~~~~~----- 69 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGT--------GGG-GSGPGYKFPD----- 69 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCC--------CCC-CCcCCCccCC-----
Confidence 67799999999999999999999999999999999999999999999987531 000 0000000000
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
+ ..+.. .+..-|.|. +.+.. +....+.++|+..++++||+.|++||+|++
T Consensus 70 -------------E------~~~~~--~~~~~G~v~--------~~~~~-~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~ 119 (146)
T cd00317 70 -------------E------NFPLK--YHHRRGTLS--------MANAG-PNTNGSQFFITTAPTPHLDGKHTVFGKVVE 119 (146)
T ss_pred -------------c------cccCc--CcCCCcEEE--------EeeCC-CCCcccEEEEECCCCcccCCCceEEEEEeC
Confidence 0 00000 012224442 11111 124456789999999999999999999999
Q ss_pred chhhhhhhccCcCCC
Q psy8249 217 GLETLDNLEKLPVNP 231 (232)
Q Consensus 217 g~~v~~~i~~~~~~~ 231 (232)
|||||++|++.++++
T Consensus 120 G~~vl~~I~~~~~~~ 134 (146)
T cd00317 120 GMDVVDKIERGDTDE 134 (146)
T ss_pred CHHHHHHHHcCCCCC
Confidence 999999999999974
No 42
>PTZ00060 cyclophilin; Provisional
Probab=99.83 E-value=1.8e-20 Score=148.37 Aligned_cols=141 Identities=36% Similarity=0.530 Sum_probs=98.8
Q ss_pred ceeEEeeCCCccccccceeccccCCCCcchhhhhhcc---------CCCCCCceeEEeecCcEEEcCCCCCCCCCCCccC
Q psy8249 47 KGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCA---------SDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIW 117 (232)
Q Consensus 47 ~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~---------~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~ 117 (232)
+-|+....+.++.|+++|+|+.+.+|++++||++||+ ..+|+++.|||++|++++|+|++... .+.
T Consensus 17 ~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~--~g~--- 91 (183)
T PTZ00060 17 KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH--NGT--- 91 (183)
T ss_pred EEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC--CCC---
Confidence 4577777777889999999999999999999999997 35899999999999999999986521 110
Q ss_pred CCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEE
Q psy8249 118 GKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFIT 197 (232)
Q Consensus 118 ~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~ 197 (232)
+.. .. .|.. + ++ +. ....|.--|.|. +.+.. ...+...++|+
T Consensus 92 ~g~-------~~----~g~~-~----~~----e~---------~~~~h~~~G~ls--------ma~~g-~~~~~sqFfIt 133 (183)
T PTZ00060 92 GGE-------SI----YGRK-F----TD----EN---------FKLKHDQPGLLS--------MANAG-PNTNGSQFFIT 133 (183)
T ss_pred CCC-------cc----cccc-c----CC----cc---------ccccCCCCCEEE--------eccCC-CCCCcceEEEE
Confidence 000 00 0000 0 00 00 001121123332 22222 22456778999
Q ss_pred EeeeeecCCCCcccceeecchhhhhhhccCcCC
Q psy8249 198 YAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVN 230 (232)
Q Consensus 198 I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~ 230 (232)
...+++||+.|++||+|++|||||++|++++++
T Consensus 134 ~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~ 166 (183)
T PTZ00060 134 TVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ 166 (183)
T ss_pred eCCCcccCCCccEEEEEEccHHHHHHHHccCCC
Confidence 999999999999999999999999999988774
No 43
>PTZ00221 cyclophilin; Provisional
Probab=99.83 E-value=2.7e-20 Score=152.40 Aligned_cols=139 Identities=27% Similarity=0.362 Sum_probs=99.0
Q ss_pred cceeEEeeCCCccccccceeccccCCCCcchhhhhhccCC-----------CCCCceeEEeecC-cEEEcCCCCCCCCCC
Q psy8249 46 IKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKG-FIVQTGDPTHTGKGG 113 (232)
Q Consensus 46 i~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~-----------~y~g~~~~rv~~~-~~vq~G~~~~~~~~~ 113 (232)
.+.||...-+....|+++|+||.+.+|++++||++||++. .|+++.|||++++ +++|+|++.
T Consensus 53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~------ 126 (249)
T PTZ00221 53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELD------ 126 (249)
T ss_pred CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCC------
Confidence 4568877777788999999999999999999999999853 3999999999986 899998753
Q ss_pred CccCCCCCcccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCce
Q psy8249 114 NSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPI 193 (232)
Q Consensus 114 ~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~ 193 (232)
+ .+.. ..| . ...-+.+ ...|.--|.|. |.+... ..+...
T Consensus 127 -~-~g~s------------~~G--------~-~f~dE~~---------~~~h~~~G~Ls--------Man~Gp-ntngSQ 165 (249)
T PTZ00221 127 -S-FNVS------------STG--------T-PIADEGY---------RHRHTERGLLT--------MISEGP-HTSGSV 165 (249)
T ss_pred -C-CCcc------------CCC--------C-cccCccc---------cccCCCCCEEE--------eCcCCC-CCccce
Confidence 0 0000 000 0 0000111 01122224442 223222 244567
Q ss_pred eeEEEeeeeecCCCCcccceeecchhhhhhhccCcCCC
Q psy8249 194 FFITYAAHAHLDLKYTIFGKVIDGLETLDNLEKLPVNP 231 (232)
Q Consensus 194 ~~i~I~~~~~ld~~~~~fg~V~~g~~v~~~i~~~~~~~ 231 (232)
++|+...|++||+.|++||+|++|||||++|++++++.
T Consensus 166 FfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 166 FGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred EEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 89999999999999999999999999999999998864
No 44
>KOG0881|consensus
Probab=99.82 E-value=5.3e-21 Score=137.46 Aligned_cols=133 Identities=40% Similarity=0.661 Sum_probs=102.6
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|.+.+|||-+.+|++|+||..|++.+||+|..|||++++||+|||||++ . .+|=
T Consensus 16 TsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTG-----T------------------GRGG 72 (164)
T KOG0881|consen 16 TSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTG-----T------------------GRGG 72 (164)
T ss_pred ecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCC-----C------------------CCCc
Confidence 7899999999999999999999999999999999999999999999999873 0 1111
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
. .-.+++| .|.-|-|-+|+--|- | ++++...+ .+...++|++.-..+||+..|+||||..
T Consensus 73 a-------SIYG~kF----~DEi~~dLkhTGAGI-------L-sMANaGPn-TNgSQFFiTLAPt~~LDGKHTIFGRV~~ 132 (164)
T KOG0881|consen 73 A-------SIYGDKF----EDEIHSDLKHTGAGI-------L-SMANAGPN-TNGSQFFITLAPTQWLDGKHTIFGRVCS 132 (164)
T ss_pred c-------ccccchh----hhhhhhhhcccchhh-------h-hhhccCCC-CCCceEEEEecCccccCCcceeehhhhh
Confidence 1 1123333 233344445553232 2 45555555 4455689999999999999999999999
Q ss_pred chhhhhhhccCcCCCC
Q psy8249 217 GLETLDNLEKLPVNPN 232 (232)
Q Consensus 217 g~~v~~~i~~~~~~~~ 232 (232)
||+|+..+..+.||.+
T Consensus 133 Gm~vikr~G~v~Td~~ 148 (164)
T KOG0881|consen 133 GMEVIKRMGMVETDNS 148 (164)
T ss_pred hHHHHHhhcceecCCC
Confidence 9999999999888753
No 45
>KOG0884|consensus
Probab=99.81 E-value=1.3e-20 Score=134.69 Aligned_cols=132 Identities=64% Similarity=1.060 Sum_probs=98.6
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|..|+|.||+|.+.+|++|++|+++|...+|+++.|||.+++|++|+|++. |..+|-
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~-----------------------~tgrgg 63 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPT-----------------------HTGRGG 63 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCC-----------------------CCCCCC
Confidence 678999999999999999999999999999999999999999999998753 222221
Q ss_pred EE-ecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceee
Q psy8249 137 VS-MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVI 215 (232)
Q Consensus 137 v~-~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~ 215 (232)
-| |...=.+. -|++ -+|-+=|.| ++++-..+ .++..++|+-+..+|||-.||+||+|+
T Consensus 64 ~siwg~~fede-~~~~-----------lkh~~rg~v--------smanngp~-tn~sqffity~kq~hldmkytvfgkvi 122 (161)
T KOG0884|consen 64 NSIWGKKFEDE-YSEY-----------LKHNVRGVV--------SMANNGPN-TNGSQFFITYGKQPHLDMKYTVFGKVI 122 (161)
T ss_pred ccccCCcchHH-HHHH-----------HhhccceeE--------EcccCCCC-CCCceEEEEecCCCccceeEeeeeeec
Confidence 11 11100000 0000 023344544 34444444 566778999999999999999999999
Q ss_pred cchhhhhhhccCcCCCC
Q psy8249 216 DGLETLDNLEKLPVNPN 232 (232)
Q Consensus 216 ~g~~v~~~i~~~~~~~~ 232 (232)
+|+|.||.|++.++|++
T Consensus 123 dg~etldele~l~v~~k 139 (161)
T KOG0884|consen 123 DGLETLDELEKLPVNEK 139 (161)
T ss_pred cchhhHHHHhhcccCcc
Confidence 99999999999999874
No 46
>KOG0880|consensus
Probab=99.80 E-value=1.8e-19 Score=139.35 Aligned_cols=140 Identities=32% Similarity=0.480 Sum_probs=98.9
Q ss_pred eEEeeCCCccccccceeccccCCCCcchhhhhhccCC----CCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCccc
Q psy8249 49 FIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD----YYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDE 124 (232)
Q Consensus 49 f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~----~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e 124 (232)
|+...-.....|+|++.||++.+|+|++||.+||.++ -|.++.|||++|++||||| .-..+
T Consensus 43 ~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGG----d~t~g----------- 107 (217)
T KOG0880|consen 43 YFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGG----DFTKG----------- 107 (217)
T ss_pred EEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecC----ccccC-----------
Confidence 4443333578999999999999999999999999943 4999999999999999984 00000
Q ss_pred ccccccccccceEEecc-cCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeee
Q psy8249 125 FKETLKHSERGIVSMAN-NGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAH 203 (232)
Q Consensus 125 ~~~~l~~~~~g~v~~~~-~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 203 (232)
+..|-.|+-. .=|+.+ |. -+|.--|++ +|++...|.|+ ..+.|+-..+++
T Consensus 108 -------~gtGg~SIyG~~F~DEN---f~----------LkH~rpG~l--------SMAn~GpDtNG-sQFfItT~~t~w 158 (217)
T KOG0880|consen 108 -------DGTGGKSIYGEKFPDEN---FK----------LKHDRPGRL--------SMANAGPDTNG-SQFFITTVKTPW 158 (217)
T ss_pred -------CCCCCeEeecCCCCCcc---ce----------eecCCCceE--------eeeccCCCCCC-ceEEEEecCCcc
Confidence 0112222211 112211 11 112233555 56666666444 457888888999
Q ss_pred cCCCCcccceeecchhhhhhhccCcCCCC
Q psy8249 204 LDLKYTIFGKVIDGLETLDNLEKLPVNPN 232 (232)
Q Consensus 204 ld~~~~~fg~V~~g~~v~~~i~~~~~~~~ 232 (232)
||+...|||+|++|||+|.+|+++.||++
T Consensus 159 LDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~ 187 (217)
T KOG0880|consen 159 LDGKHVVFGQVLEGMDVVRKIENVKTDER 187 (217)
T ss_pred ccCceeEEeeehhhHHHHHHHHhcccCCC
Confidence 99999999999999999999999999864
No 47
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=99.77 E-value=7e-19 Score=138.01 Aligned_cols=132 Identities=36% Similarity=0.640 Sum_probs=93.2
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++++||.+.+|++++||++||+.++|+++.|||+++++++|+|++.. .+. .+.... |.
T Consensus 12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~---~g~--g~~s~~------------g~ 74 (171)
T cd01925 12 TTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTG---TGT--GGESIY------------GE 74 (171)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCC---CCc--cCcccC------------CC
Confidence 7899999999999999999999999999999999999999999999998641 111 000000 00
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
.+.+..+-...+..-|.|. +++...+ .+...++|+..++++||+.|++||+|++
T Consensus 75 -----------------~~~~E~~~~~~~~~~G~l~--------ma~~g~~-s~~sqFfIt~~~~~~ldg~~tvFG~V~g 128 (171)
T cd01925 75 -----------------PFKDEFHSRLRFNRRGLVG--------MANAGDD-SNGSQFFFTLDKADELNNKHTLFGKVTG 128 (171)
T ss_pred -----------------ccCcccccCcCCCCCcEEE--------ECcCCCC-CcccEEEEEcCCCcccCCCceEEEEEEE
Confidence 0000000000111224442 2222222 4456789999999999999999999994
Q ss_pred -chhhhhhhccCcCCC
Q psy8249 217 -GLETLDNLEKLPVNP 231 (232)
Q Consensus 217 -g~~v~~~i~~~~~~~ 231 (232)
++++|++|+.+++++
T Consensus 129 ~~~~~v~~i~~~~~~~ 144 (171)
T cd01925 129 DTIYNLLKLAEVETDK 144 (171)
T ss_pred CcHHHHHHHhcCCcCC
Confidence 688999999999875
No 48
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.77 E-value=1.2e-18 Score=134.78 Aligned_cols=133 Identities=41% Similarity=0.715 Sum_probs=92.7
Q ss_pred ccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEE
Q psy8249 59 TGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVS 138 (232)
Q Consensus 59 ~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~ 138 (232)
.|+++++||++.+|++++||++||+.++|+++.|||+.+++++|+|++...+. .+. + .. ..+. .
T Consensus 9 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~-----~~~----~---~~---~~~~-~ 72 (155)
T PF00160_consen 9 LGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGG-----YGR----E---DS---TGGE-P 72 (155)
T ss_dssp EEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSS-----STS----E---EB---TTBS-C
T ss_pred ccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCC-----ccc----c---cc---cCcc-c
Confidence 89999999999999999999999999999999999999999999999764322 000 0 00 0000 0
Q ss_pred ecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccC-CCCCCCCceeeEEEeeeeecCCCCcccceeecc
Q psy8249 139 MANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKL-PVNPNHKPIFFITYAAHAHLDLKYTIFGKVIDG 217 (232)
Q Consensus 139 ~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~-~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~g 217 (232)
+. +..... ..++ .-|.|. +.+. .......+.+.|...++++||+.|++||+|++|
T Consensus 73 ~~----~E~~~~------~~~~------~~G~v~--------~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G 128 (155)
T PF00160_consen 73 IP----DEFNPS------LLKH------RRGLVS--------MARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEG 128 (155)
T ss_dssp BS----SSGBTT------SSSS------STTEEE--------EEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEH
T ss_pred cc----cccccc------cccc------cceeee--------ecccccCCCCCCceEEeeccCCCccccceeeeeEEehh
Confidence 00 000000 0011 112221 1111 112234678999999999999999999999999
Q ss_pred hhhhhhhccCcCCC
Q psy8249 218 LETLDNLEKLPVNP 231 (232)
Q Consensus 218 ~~v~~~i~~~~~~~ 231 (232)
|||||+|+++++++
T Consensus 129 ~~vl~~i~~~~~~~ 142 (155)
T PF00160_consen 129 MDVLDKIEAGPTDE 142 (155)
T ss_dssp HHHHHHHHTSBBTT
T ss_pred HHHHHHHHCCCCCC
Confidence 99999999998873
No 49
>KOG0415|consensus
Probab=99.75 E-value=7.8e-19 Score=146.43 Aligned_cols=140 Identities=41% Similarity=0.710 Sum_probs=105.1
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+++|.||.+++|.+|.||++||+-.||+.+.||.|..+|++|.|||+++|.++.++|+..+-+..
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~----------- 75 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQA----------- 75 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccc-----------
Confidence 789999999999999999999999999999999999999999999999999999999999885432211
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEe-eeeecCCCCcccceee
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA-AHAHLDLKYTIFGKVI 215 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~-~~~~ld~~~~~fg~V~ 215 (232)
.||- +....+-+|+--|.|. +.....+ -....++|+++ +-..||+.+||||+|.
T Consensus 76 -------------rffe---aE~~p~l~Hsk~G~vs--------mvs~g~n-~~gSQF~iTlgenLdyLDg~htvfGqV~ 130 (479)
T KOG0415|consen 76 -------------RFFE---AEFLPKLKHSKMGTVS--------MVSAGEN-LNGSQFFITLGENLDYLDGKHTVFGQVA 130 (479)
T ss_pred -------------hhhh---hhhcccccccccceEE--------eecCCcc-cccceEEEEccccccccccccceeeehh
Confidence 1110 0011122344445552 2222111 22334677775 4489999999999999
Q ss_pred cchhhhhhhccCcCCCC
Q psy8249 216 DGLETLDNLEKLPVNPN 232 (232)
Q Consensus 216 ~g~~v~~~i~~~~~~~~ 232 (232)
+|||+|.+||-.-+|++
T Consensus 131 EG~dtl~kiNea~vD~~ 147 (479)
T KOG0415|consen 131 EGFDTLTKINEAIVDPK 147 (479)
T ss_pred hhHHHHHHHHHHhcCCC
Confidence 99999999998777653
No 50
>KOG0883|consensus
Probab=99.73 E-value=2.1e-18 Score=145.47 Aligned_cols=145 Identities=37% Similarity=0.661 Sum_probs=103.1
Q ss_pred eeecceeEEeeCCCccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCc
Q psy8249 43 HRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFE 122 (232)
Q Consensus 43 ~rvi~~f~iq~Gd~t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~ 122 (232)
.||-+.-+++ -.|+.|.+.+||+.+.+|++|+||+.||+.+||+|+.|||.+.+||||||||+ |.-
T Consensus 272 ~rvKkkgyvr--l~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPT----------GTG-- 337 (518)
T KOG0883|consen 272 TRVKKKGYVR--LVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPT----------GTG-- 337 (518)
T ss_pred ccccccceEE--EeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCC----------CCC--
Confidence 3444443333 23789999999999999999999999999999999999999999999999986 110
Q ss_pred ccccccccccccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeee
Q psy8249 123 DEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHA 202 (232)
Q Consensus 123 ~e~~~~l~~~~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 202 (232)
..|---|... ..-+|--.| . |+ |-.|| +|++.+.+ .+...++|.-..|.
T Consensus 338 ----------~GGeSiWgKp----FkDEf~~~l---~-----H~-------gRGvl-SMANsGpn-TNgSQFFItyrsck 386 (518)
T KOG0883|consen 338 ----------RGGESIWGKP----FKDEFCSNL---S-----HD-------GRGVL-SMANSGPN-TNGSQFFITYRSCK 386 (518)
T ss_pred ----------CCCccccCCc----cccccCCCC---C-----cC-------CcceE-eeccCCCC-CCCceEEEEecchh
Confidence 0111111110 001111111 1 22 11122 34454444 55667899999999
Q ss_pred ecCCCCcccceeecchhhhhhhccCcCCCC
Q psy8249 203 HLDLKYTIFGKVIDGLETLDNLEKLPVNPN 232 (232)
Q Consensus 203 ~ld~~~~~fg~V~~g~~v~~~i~~~~~~~~ 232 (232)
|||...|+||||+.|+|+|++|+++++|++
T Consensus 387 hLd~KHTIFGrvVGGldtL~amEnve~d~~ 416 (518)
T KOG0883|consen 387 HLDNKHTIFGRVVGGLDTLTAMENVETDEK 416 (518)
T ss_pred hccccceeeeeeeccHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999874
No 51
>KOG0882|consensus
Probab=99.67 E-value=3.9e-17 Score=140.33 Aligned_cols=133 Identities=35% Similarity=0.611 Sum_probs=97.6
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+|.+.||++++|++++||..-|+.+||+|..|||++++||||+|| +.+.. ..|-
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgd-----p~g~g-----------------tgge 468 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGD-----PLGDG-----------------TGGE 468 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCC-----CCCCC-----------------CCCc
Confidence 6789999999999999999999999999999999999999999999875 11111 1111
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
--|.+. .--+|--+| .-|+-|++ +|++.+.+ .+...++|+..-.++||+..|+||||..
T Consensus 469 siwg~d----fedefh~~l----rhdrpft~------------smanag~n-tngsqffit~~~tpwld~khtvfgrv~~ 527 (558)
T KOG0882|consen 469 SIWGKD----FEDEFHPNL----RHDRPFTV------------SMANAGPN-TNGSQFFITTVPTPWLDGKHTVFGRVTA 527 (558)
T ss_pred cccccc----chhhcCccc----ccCCCceE------------EecccCCC-CCCceEEEEecCccccCCcceeEEEEec
Confidence 111111 001221222 22333442 45666644 4455688999889999999999999999
Q ss_pred chhhhhhhccCcCCCC
Q psy8249 217 GLETLDNLEKLPVNPN 232 (232)
Q Consensus 217 g~~v~~~i~~~~~~~~ 232 (232)
|||||+.|+++.||++
T Consensus 528 gm~vvqri~~v~t~k~ 543 (558)
T KOG0882|consen 528 GMDVVQRIEQVKTDKY 543 (558)
T ss_pred chhHHhHhhhcccCcC
Confidence 9999999999999764
No 52
>KOG0879|consensus
Probab=99.64 E-value=1.5e-16 Score=115.87 Aligned_cols=72 Identities=39% Similarity=0.738 Sum_probs=60.5
Q ss_pred CEEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc--------ccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249 1 MSVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED 70 (232)
Q Consensus 1 ~~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~--------y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~ 70 (232)
|+|.+ -++.|+|+|+||.+.+|+|.+||.+.|+..| |.++.||||||+|||||||--+ .|.....+|+..
T Consensus 15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~ 94 (177)
T KOG0879|consen 15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGST 94 (177)
T ss_pred EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCC
Confidence 45666 4589999999999999999999999999998 9999999999999999998743 455666666654
Q ss_pred CC
Q psy8249 71 CP 72 (232)
Q Consensus 71 ~P 72 (232)
.|
T Consensus 95 F~ 96 (177)
T KOG0879|consen 95 FP 96 (177)
T ss_pred CC
Confidence 33
No 53
>KOG0546|consensus
Probab=99.64 E-value=2.7e-16 Score=132.44 Aligned_cols=68 Identities=41% Similarity=0.698 Sum_probs=56.3
Q ss_pred EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc-----------ccceeeeeecceeEEeeCCCcc-ccccceeccc
Q psy8249 2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY-----------YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFC 68 (232)
Q Consensus 2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~-----------y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~ 68 (232)
++-| .-+.|+|+|+||.+.||+|++||.+||++.- |.|+.||||||+|||||||.+. .|+....+|+
T Consensus 14 DISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG 93 (372)
T KOG0546|consen 14 DISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYG 93 (372)
T ss_pred EEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccc
Confidence 3445 4588999999999999999999999997653 9999999999999999999863 3555555554
Q ss_pred c
Q psy8249 69 E 69 (232)
Q Consensus 69 ~ 69 (232)
.
T Consensus 94 ~ 94 (372)
T KOG0546|consen 94 E 94 (372)
T ss_pred c
Confidence 3
No 54
>KOG0885|consensus
Probab=99.40 E-value=2.4e-13 Score=114.53 Aligned_cols=129 Identities=34% Similarity=0.641 Sum_probs=84.5
Q ss_pred ccccccceeccccCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccce
Q psy8249 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGI 136 (232)
Q Consensus 57 t~~G~i~i~l~~~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~ 136 (232)
|+.|+|.|+||+.++|.+|+||+.||..+||+|+.|||++|+|++|||+ ..+...-|..
T Consensus 19 TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggd-----p~~~gtGges---------------- 77 (439)
T KOG0885|consen 19 TTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGD-----PTGTGTGGES---------------- 77 (439)
T ss_pred eccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCC-----CCCCCCCccc----------------
Confidence 7789999999999999999999999999999999999999999999975 1111000111
Q ss_pred EEecccCCCcccceEEeeccCCCCCCCCccEEEEEeeccchhhhcccCCCCCCCCceeeEEEeeeeecCCCCcccceeec
Q psy8249 137 VSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYTIFGKVID 216 (232)
Q Consensus 137 v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ld~~~~~fg~V~~ 216 (232)
-++-++.+..|---+|.-=|-| .|++...+ .+...++++++.|++|++..|+||+|+.
T Consensus 78 -------------iyg~~fadE~h~Rlrf~rrGlv--------gmana~~~-~ngsqFfftl~~~~el~nk~tiFGKVtG 135 (439)
T KOG0885|consen 78 -------------IYGRPFADEFHPRLRFNRRGLV--------GMANAGND-DNGSQFFFTLGDTPELNNKHTIFGKVTG 135 (439)
T ss_pred -------------cccccchhhcCcceeeecccee--------eecccCCC-CCCceEEEEecCChHhcccCceeeeecc
Confidence 1111111111111111111222 23343333 4556789999999999999999999986
Q ss_pred -chhhhhhhccCc
Q psy8249 217 -GLETLDNLEKLP 228 (232)
Q Consensus 217 -g~~v~~~i~~~~ 228 (232)
-.=.+-+|.-+-
T Consensus 136 dtIYn~lri~e~e 148 (439)
T KOG0885|consen 136 DTIYNMLRISEVE 148 (439)
T ss_pred hhhhhhhhhcccc
Confidence 333334443333
No 55
>KOG0111|consensus
Probab=98.98 E-value=2.5e-10 Score=90.35 Aligned_cols=69 Identities=32% Similarity=0.552 Sum_probs=57.0
Q ss_pred EEEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeeeecceeEEeeCCCcc-ccccceeccccC
Q psy8249 2 SVSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPTH-TGDIKIELFCED 70 (232)
Q Consensus 2 ~v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~rvi~~f~iq~Gd~t~-~G~i~i~l~~~~ 70 (232)
.+.| +-..|+|++.|..+.+|++.+||..||.... |.|+.|||+|+.||.||||-|. .|...-.+|+..
T Consensus 142 ~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkk 215 (298)
T KOG0111|consen 142 DIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKK 215 (298)
T ss_pred heeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccc
Confidence 3455 5678999999999999999999999997654 9999999999999999999875 355555555543
No 56
>KOG0865|consensus
Probab=98.09 E-value=1.9e-06 Score=66.80 Aligned_cols=67 Identities=42% Similarity=0.731 Sum_probs=51.1
Q ss_pred EEE-EeCCeeEEEEeecCCCchhHHhHHHhhhcCc---ccceeeee---ecceeEEeeCCCcc-ccccceecccc
Q psy8249 3 VSL-HTDVGDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHR---NIKGFIVQTGDPTH-TGDIKIELFCE 69 (232)
Q Consensus 3 v~~-~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~---y~~~~f~r---vi~~f~iq~Gd~t~-~G~i~i~l~~~ 69 (232)
+.+ .+++|++.++|+.+..|+|.+||-+|+.... |.+.+||| .+++||.|+||.+. .|...-.+|.+
T Consensus 10 ~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~e 84 (167)
T KOG0865|consen 10 IAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGE 84 (167)
T ss_pred eeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEeccc
Confidence 444 4799999999999999999999999997433 89999999 34579999999863 23333333443
No 57
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.39 E-value=0.046 Score=49.09 Aligned_cols=96 Identities=24% Similarity=0.403 Sum_probs=60.8
Q ss_pred cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249 69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA 148 (232)
Q Consensus 69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~ 148 (232)
..+|.++++|+++.+.+.+. ..+...-|+ +.....+...+.|+. ....+|.+.+++.|.. .
T Consensus 209 ~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi-----------~d~~L~g~~~p~En~---~~R~rGtVTVRn~G~G--~ 269 (503)
T TIGR03268 209 PNAPVSVEHFLALMEDGTFR---VDYRTSTFI-----------SDDSLRGLDKPEENI---EKRRRGAVTVRNSGVG--E 269 (503)
T ss_pred CCCChhHHHHHHHHhCCeEE---EeeeecceE-----------ecccccCccCCcccc---CcccceeEEEEeeccC--c
Confidence 56899999999998876431 000001111 122333555666655 3336899999987653 3
Q ss_pred ceEEeeccCCCCCCCCccEEEEEeeccchhhhcccC
Q psy8249 149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKL 184 (232)
Q Consensus 149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~~ 184 (232)
-..||...+.+. .-.|+|+|+|+.|||+++--+..
T Consensus 270 G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 270 GRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred eeEEEEcCCCCC-CcccceeEEEecceeeeecccCC
Confidence 356887776542 23599999999999998765443
No 58
>PRK00969 hypothetical protein; Provisional
Probab=95.21 E-value=0.056 Score=48.69 Aligned_cols=95 Identities=25% Similarity=0.431 Sum_probs=60.5
Q ss_pred cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249 69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA 148 (232)
Q Consensus 69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~ 148 (232)
..+|.++++|+++.+.+.+. ..+...-|+ +..+..+...+.|+. ....+|.+.+++.|...
T Consensus 212 ~~~p~s~EH~la~~~~G~f~---Vd~~tstfI-----------~d~~L~g~~~p~En~---~~R~~GtVTVRt~G~g~-- 272 (508)
T PRK00969 212 PGAPKSVEHFLALLEDGTFE---VDFETSTFI-----------ADDRLQGLKIPEENF---EPRRRGTVTVRTAGVGV-- 272 (508)
T ss_pred CCCCchHHHHHHHHhCCeEE---EeeeecceE-----------eeccccCccCCcccc---CccccceEEEEeeccCc--
Confidence 36799999999998876431 000001111 122333556666665 33368999998876533
Q ss_pred ceEEeeccCCCCCCCCccEEEEEeeccchhhhccc
Q psy8249 149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEK 183 (232)
Q Consensus 149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~ 183 (232)
-.-||...+.+. .-.|+|+|+|+.|||+++--.+
T Consensus 273 G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 273 GKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred eeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 356887777542 2359999999999999876444
No 59
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.32 Score=42.54 Aligned_cols=95 Identities=27% Similarity=0.421 Sum_probs=57.8
Q ss_pred cCCCCcchhhhhhccCCCCCCceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEEecccCCCccc
Q psy8249 69 EDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA 148 (232)
Q Consensus 69 ~~~P~~~~~F~~l~~~~~y~g~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~~~~~~~~~~~ 148 (232)
..+|.++++|++|...+.+. +- - .+++-.+..+....+.+.|+.. + ..+|.++..+.|.++
T Consensus 211 ~nsP~saEH~lalmedG~lr------i~------~--~tntfis~~~lq~~~~~~en~d-~--RerG~iTvRn~Gvge-- 271 (512)
T COG4070 211 RNSPKSAEHFLALMEDGTLR------ID------V--TTNTFISDDTLQEEKVPEENFD-L--RERGAITVRNVGVGE-- 271 (512)
T ss_pred CCCchhHHHHHHHhhcceEE------EE------E--eccceeeccccccccCChhhhh-h--hhcceEEEEeeeccc--
Confidence 35789999999988765321 00 0 0011112223335566666652 2 268999998876433
Q ss_pred ceEEeeccCCCCCCCCccEEEEEeeccchhhhccc
Q psy8249 149 SQFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEK 183 (232)
Q Consensus 149 s~f~itl~~~~~ld~~~tvfG~VveG~dvl~~I~~ 183 (232)
-.-||.-.+.++ .-.|.++|+|.+||++++-...
T Consensus 272 GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 272 GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 255777666443 2358999999999999876544
No 60
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=85.13 E-value=3.2 Score=37.68 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=55.9
Q ss_pred ccceeccccCCCCcchhhhhhccCCCCC-C-ceeEEeecCcEEEcCCCCCCCCCCCccCCCCCcccccccccccccceEE
Q psy8249 61 DIKIELFCEDCPKTCENFLALCASDYYN-G-CIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVS 138 (232)
Q Consensus 61 ~i~i~l~~~~~P~~~~~F~~l~~~~~y~-g-~~~~rv~~~~~vq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~g~v~ 138 (232)
-+.|+||.+.||.++..|+++..-.... | ..+|=..++..+--++ ..+.+.+-+|+.|.-+. .+|.++
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~---------~~~~k~LiPEN~P~~~V-~ag~Ig 445 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGN---------KELAKGLIPENTPEDKV-EAGVIG 445 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccC---------chhccccCCCCCCCCcc-ccceEe
Confidence 3778999999999999999886432211 1 2233333443222111 11233444454433332 456666
Q ss_pred ecccC---CCcccceEEe--eccCC-CCCCCCccEEEEEeeccchhhhcccC
Q psy8249 139 MANNG---PNTNASQFFI--TYAAH-AHLDLKYTIFGKVIDGFETLDNLEKL 184 (232)
Q Consensus 139 ~~~~~---~~~~~s~f~i--tl~~~-~~ld~~~tvfG~VveG~dvl~~I~~~ 184 (232)
+-|.. ....|-+|-= ..++. -.+++ --++|+|+++++.|.++...
T Consensus 446 vTN~a~k~~G~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 446 VTNQACKHVGMIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred eechhhhcCceEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence 54322 1111111000 00111 11222 22789999999998887653
No 61
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=65.69 E-value=8 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCeeEEEEeecCCCchhHHhHHHhhhcCcccceeee
Q psy8249 8 DVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFH 43 (232)
Q Consensus 8 ~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~ 43 (232)
.--.++.+|..+.||+||+-|.++. =|.+..+|
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~H 38 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIH 38 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE
T ss_pred CCeEEEEEEcccCChHHHHHHHHhC---CCCCcEEE
Confidence 3446899999999999999999987 34444444
No 62
>PRK00969 hypothetical protein; Provisional
Probab=61.68 E-value=21 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.0
Q ss_pred eEEEEeecCCCchhHHhHHHhhhcCcc
Q psy8249 11 DIKIELFCEDCPKTCENFLALCASDYY 37 (232)
Q Consensus 11 ~i~i~L~~~~~p~~~~nf~~l~~~~~y 37 (232)
=|.|+||.+.||+|+..|.++.--...
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~~ 405 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKTK 405 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCccc
Confidence 489999999999999999999755443
No 63
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=55.31 E-value=9.5 Score=33.73 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEEEEeecCCCchhHHhHHHhhh
Q psy8249 11 DIKIELFCEDCPKTCENFLALCA 33 (232)
Q Consensus 11 ~i~i~L~~~~~p~~~~nf~~l~~ 33 (232)
-|.|+||.+.||.++..|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 38999999999999999988754
No 64
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=41.69 E-value=69 Score=23.71 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=31.8
Q ss_pred EEEEeCCeeEEEEeecCCCc---------hhHHhHHHhhhcC-cccceeeeeecce
Q psy8249 3 VSLHTDVGDIKIELFCEDCP---------KTCENFLALCASD-YYNGCIFHRNIKG 48 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p---------~~~~nf~~l~~~~-~y~~~~f~rvi~~ 48 (232)
|-+||..|++.+..-.++++ +.++.|++..+.= .-+-..|+-++++
T Consensus 6 IfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 6 IFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 56899999987776644433 3677888876431 1357788888876
No 65
>PHA03001 putative virion core protein; Provisional
Probab=32.99 E-value=90 Score=23.14 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=31.3
Q ss_pred EEEEeCCeeEEEEee--cCCCc------hhHHhHHHhhhcC-cccceeeeeecce
Q psy8249 3 VSLHTDVGDIKIELF--CEDCP------KTCENFLALCASD-YYNGCIFHRNIKG 48 (232)
Q Consensus 3 v~~~t~~G~i~i~L~--~~~~p------~~~~nf~~l~~~~-~y~~~~f~rvi~~ 48 (232)
|-+||..|++.+..- +..|| +.+++|++..+.= .-+..+|+-++++
T Consensus 6 IfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 6 IFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 568999999776553 33344 4677898876421 1367888888876
No 66
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=31.38 E-value=38 Score=24.86 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCchhHHhHHHhhhcCcccceeeeeecceeEEeeCCCccccccceeccccC
Q psy8249 20 DCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCED 70 (232)
Q Consensus 20 ~~p~~~~nf~~l~~~~~y~~~~f~rvi~~f~iq~Gd~t~~G~i~i~l~~~~ 70 (232)
.-|.|..|-+.-..++-|.|...|++.|.|.--+- .+..|++.+++.+..
T Consensus 6 srp~t~~nqvr~s~sgpWsGNa~HK~eKYfITsAk-RD~~g~Lql~i~pas 55 (144)
T PF10657_consen 6 SRPFTATNQVRKSTSGPWSGNAVHKAEKYFITSAK-RDRYGKLQLTISPAS 55 (144)
T ss_pred cCccccchhhcccccCCccCchhhhhheeEEeeee-cccCCceEEEEecCC
Confidence 35888999999999999999999999887765544 467888888877654
No 67
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=31.01 E-value=86 Score=22.81 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=16.4
Q ss_pred CCCCCccEEEEEeeccchhhhcccC
Q psy8249 160 HLDLKYTIFGKVIDGFETLDNLEKL 184 (232)
Q Consensus 160 ~ld~~~tvfG~VveG~dvl~~I~~~ 184 (232)
.+-....++|++.++.+.+.++...
T Consensus 90 ~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 90 RPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp --SSSEEEEEEEEC-GGGGGG--TT
T ss_pred ccCCcceEEEEECCCHHHHhhCCCC
Confidence 4455688999999999988887553
No 68
>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases. Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.
Probab=30.06 E-value=54 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=18.3
Q ss_pred eeec---CCCCcccceeecchhhhhh
Q psy8249 201 HAHL---DLKYTIFGKVIDGLETLDN 223 (232)
Q Consensus 201 ~~~l---d~~~~~fg~V~~g~~v~~~ 223 (232)
|+.+ .++|-+-|+|-+|+-+++-
T Consensus 63 CP~l~~g~~~yiIMG~v~dG~~~l~p 88 (109)
T cd03575 63 CPNITAGEGPLIIMGDVHDGMAVLQP 88 (109)
T ss_pred CCccccccccEEEEEEecCCeEeeCc
Confidence 6755 5689999999999887753
No 69
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=22.97 E-value=62 Score=22.14 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.0
Q ss_pred CCeeEEEEeecCCCchh
Q psy8249 8 DVGDIKIELFCEDCPKT 24 (232)
Q Consensus 8 ~~G~i~i~L~~~~~p~~ 24 (232)
+-++-.|+||.|.||.+
T Consensus 37 ~~~~ceIELY~DfApyS 53 (95)
T PF13496_consen 37 PNHPCEIELYYDFAPYS 53 (95)
T ss_pred CCCCeEEEEEeccCccc
Confidence 44688999999999954
No 70
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=22.93 E-value=1.1e+02 Score=19.77 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=19.4
Q ss_pred CCCccEEEEEeeccchhhhcccCCCCCCCC
Q psy8249 162 DLKYTIFGKVIDGFETLDNLEKLPVNPNHK 191 (232)
Q Consensus 162 d~~~tvfG~VveG~dvl~~I~~~~~~~~~~ 191 (232)
|..-.++|+|++| -+.++....+++++.
T Consensus 17 d~~G~~vG~vveG--d~k~L~G~~vd~~G~ 44 (64)
T PF12396_consen 17 DDDGNVVGRVVEG--DPKKLVGKKVDEDGD 44 (64)
T ss_pred CCCCCEEEEEecC--CHHHhcCCcCCCCCC
Confidence 3445699999999 456666666766554
No 71
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=22.88 E-value=1.3e+02 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=32.6
Q ss_pred ccceEEecccCCCcccceEEeeccCCCCCCCCccEEEEEee-ccchhhhccc
Q psy8249 133 ERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVID-GFETLDNLEK 183 (232)
Q Consensus 133 ~~g~v~~~~~~~~~~~s~f~itl~~~~~ld~~~tvfG~Vve-G~dvl~~I~~ 183 (232)
.+|.+.+.|....-..-|.-|++.+.|. |++.-|+|+|.+ -+.+|+-|..
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 5788888877655556688899999875 888999999994 6888888864
No 72
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=20.92 E-value=1.3e+02 Score=24.94 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=27.3
Q ss_pred EEEEeCCeeEEEEeecCCCchhHHhHHHhhhcCcccceeee
Q psy8249 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFH 43 (232)
Q Consensus 3 v~~~t~~G~i~i~L~~~~~p~~~~nf~~l~~~~~y~~~~f~ 43 (232)
|.+.||.| +..||..-+||.+|+++.-.-...||
T Consensus 45 VELfTSQG-------CsSCPPAd~~l~k~a~~~~vlALsyh 78 (261)
T COG5429 45 VELFTSQG-------CSSCPPADANLAKLADDPGVLALSYH 78 (261)
T ss_pred EEEeecCC-------cCCCChHHHHHHHhccCCCEEEEEEe
Confidence 45556666 47899999999999998877777777
Done!