RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8249
(232 letters)
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 270 bits (692), Expect = 2e-93
Identities = 112/137 (81%), Positives = 122/137 (89%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GDIKIELFC+DCPK CENFLALCAS YYNGCIFHRNIKGF+VQTGDPT TGKGG SI
Sbjct: 7 TNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESI 66
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGKKFEDEF+ETLKH RG+VSMANNGPNTN SQFFITYA HLD KYT+FGKVIDGFE
Sbjct: 67 WGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFE 126
Query: 177 TLDNLEKLPVNPNHKPI 193
TLD LEKLPV+ ++P+
Sbjct: 127 TLDTLEKLPVDKKYRPL 143
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 211 bits (540), Expect = 2e-70
Identities = 77/137 (56%), Positives = 101/137 (73%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD+ +EL C+ PK CENF+ LC YY+G IFHR+I+ F++Q GDPT TG+GG SI
Sbjct: 6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESI 65
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGK F+DEFK L H RG++SMAN+GPNTN SQFFITY + HLD K+T+FG+V+ G E
Sbjct: 66 WGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLE 125
Query: 177 TLDNLEKLPVNPNHKPI 193
TL+ +E +P +P
Sbjct: 126 TLEAMENVPDPGTDRPK 142
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 187 bits (478), Expect = 5e-61
Identities = 71/137 (51%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I IEL+ ++ PKT ENFL+L +Y+G FHR I GF++Q GDPT TG GG S
Sbjct: 4 TTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTG-GGGSG 62
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
G KF DE H RG +SMAN GPNTN SQFFIT A HLD K+T+FGKV++G +
Sbjct: 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMD 122
Query: 177 TLDNLEKLPVNPNHKPI 193
+D +E+ + N +PI
Sbjct: 123 VVDKIERGDTDENGRPI 139
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 184 bits (469), Expect = 1e-59
Identities = 74/137 (54%), Positives = 91/137 (66%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI I LF E+ PKT ENF + YYN IFHR IKGF++QTGDPT G GG SI
Sbjct: 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESI 63
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGK+FEDEF +LKH +SMAN GPNTN SQFFIT A LD K+T+FG+V+ G +
Sbjct: 64 WGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMD 123
Query: 177 TLDNLEKLPVNPNHKPI 193
+ +E + + N +P
Sbjct: 124 VVQRIENVKTDKNDRPY 140
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 175 bits (447), Expect = 2e-56
Identities = 63/131 (48%), Positives = 86/131 (65%), Gaps = 5/131 (3%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGK 119
G I IELF ++ PKT ENFL+LC +Y+G IFHR I GF++Q GDPT G GG +
Sbjct: 9 GRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGTGG----KR 64
Query: 120 KFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFETLD 179
DEF LKH +RG +SMA +GPN+ SQFFIT HLD YT+FG+V++G + ++
Sbjct: 65 SIPDEFVSKLKH-KRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVE 123
Query: 180 NLEKLPVNPNH 190
+EK+ + +
Sbjct: 124 KIEKVETDGDR 134
Score = 92.3 bits (230), Expect = 9e-24
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTG 60
+ + T++G I IELF ++ PKT ENFL+LC +Y+G IFHR I GF++Q GDPT G
Sbjct: 2 LDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPG 59
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 165 bits (419), Expect = 4e-52
Identities = 74/140 (52%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G+I +EL+ PKTC+NF L YYNG IFHR IK F++Q GDPT TG+GG SI
Sbjct: 4 TTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASI 63
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GKKFEDE LKH+ GI+SMAN GPNTN SQFFIT A LD K+TIFG+V G +
Sbjct: 64 YGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMK 123
Query: 177 TLDNLEKLPVNPNHKPIFFI 196
++N+ ++ + +PI +
Sbjct: 124 VIENMVEVQTQTD-RPIDEV 142
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 162 bits (411), Expect = 1e-50
Identities = 64/141 (45%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI IEL+ ++ PK C NF+ LC YY+ IFHR + GFI+Q GDPT TG GG SI
Sbjct: 12 TTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESI 71
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVI-DGF 175
+G+ F+DEF L+ + RG+V MAN G ++N SQFF T L+ K+T+FGKV D
Sbjct: 72 YGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTI 131
Query: 176 ETLDNLEKLPVNPNHKPIFFI 196
L L ++ + + +P++
Sbjct: 132 YNLLKLAEVETDKDERPVYPP 152
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 160 bits (406), Expect = 5e-50
Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHT-GKGGNSIWG 118
GDI IEL+ + PKT NFL L +Y+G IFHR I GF++Q GDPT G GG
Sbjct: 9 GDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP-- 66
Query: 119 KKFEDEFKETLKH-SERGIVSMANNG-PNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
F+DE +RG +SMA G PN+N SQFFIT + LD KYT+FG+V++G +
Sbjct: 67 -PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD 125
Query: 177 TLDNLEKLPV----NPNHKPI 193
+D ++ P
Sbjct: 126 VVDKIKNGDTDDSGYVQDVPA 146
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 150 bits (382), Expect = 3e-46
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 8/144 (5%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GD+ I+LF ++CP C NFL LC YYN C+F+ K FI QTGDPT TG GG SI
Sbjct: 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESI 63
Query: 117 WGKK-------FEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHA-HLDLKYTIF 168
+ + FE E LKHS++G VSM N G N N SQF+IT + +LD K+T+F
Sbjct: 64 YSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVF 123
Query: 169 GKVIDGFETLDNLEKLPVNPNHKP 192
G+V++GF+ L+ + V+ + +P
Sbjct: 124 GQVVEGFDVLEKINDAIVDDDGRP 147
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 150 bits (381), Expect = 4e-46
Identities = 68/143 (47%), Positives = 86/143 (60%), Gaps = 13/143 (9%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTG 110
G I +ELF + PKT ENF ALC + Y G FHR I F++Q GD T G
Sbjct: 15 GRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNG 74
Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
GG SI+G+KF DE FK LKH+ G++SMAN GPNTN SQFFIT LD K+ +FG
Sbjct: 75 TGGKSIYGEKFPDENFK--LKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFG 132
Query: 170 KVIDGFETLDNLEKLPVNPNHKP 192
KV++G + + +E + N KP
Sbjct: 133 KVVEGMDVVKKIENVGS-GNGKP 154
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 133 bits (336), Expect = 3e-39
Identities = 72/150 (48%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 44 RNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHR 94
+ K F + D G I ELF + PKT ENF ALC D +Y G IFHR
Sbjct: 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHR 73
Query: 95 NIKGFIVQTGDPT-HTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFI 153
I F+ Q GD T H G GG SI+G+KF DE LKH + G++SMAN GPNTN SQFFI
Sbjct: 74 IIPQFMCQGGDITNHNGTGGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFI 132
Query: 154 TYAAHAHLDLKYTIFGKVIDGFETLDNLEK 183
T LD K+ +FGKVI+G E + +EK
Sbjct: 133 TTVPCPWLDGKHVVFGKVIEGMEVVRAMEK 162
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 127 bits (321), Expect = 7e-37
Identities = 65/143 (45%), Positives = 85/143 (59%), Gaps = 11/143 (7%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGD-PTHTG 110
G IK+ELF + PKT ENF C ++ Y GC FHR IK F++Q GD G
Sbjct: 33 GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92
Query: 111 KGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGK 170
G SI+G KFEDE KH+ G++SMAN+GPNTN QFFIT A LD K+ +FG+
Sbjct: 93 TGCVSIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGR 151
Query: 171 VI-DGFETLDNLEKLPVNPNHKP 192
V+ DG + +E + PN++P
Sbjct: 152 VLGDGLLVVRKIENVATGPNNRP 174
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 94.0 bits (234), Expect = 3e-24
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI +EL+ + P T ENFLA +Y+ IFHR I GF++Q G T +
Sbjct: 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKET- 62
Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK-----YTIFGK 170
K ++E L ++ RG ++MA N P++ SQFFI +A LD + YT+FG+
Sbjct: 63 -LKPIKNEAGNGLSNT-RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGE 120
Query: 171 VIDGFETLDNLEKLPV 186
V +G + +D + +
Sbjct: 121 VTEGMDVVDKIAGVET 136
Score = 64.4 bits (157), Expect = 4e-13
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 5 LHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
T +GDI +EL+ + P T ENFLA +Y+ IFHR I GF++Q G
Sbjct: 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGG 51
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 77.2 bits (190), Expect = 1e-17
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 48 GFIVQTGDP-----THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQ 102
+ GDP T G+I++EL + P + +NF+ S +YN FHR I GF++Q
Sbjct: 21 AALAAKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQ 80
Query: 103 TGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNA-SQFFITYAAHAHL 161
G T + ++E L+++ RG ++MA +A SQFFI A +A L
Sbjct: 81 GGGFTEQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFL 137
Query: 162 -----DLKYTIFGKVIDGFETLDNLEKLP 185
D Y +FGKV+ G + D + ++P
Sbjct: 138 DHGQRDFGYAVFGKVVKGMDVADKISQVP 166
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 74.9 bits (184), Expect = 6e-17
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 16/137 (11%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG--DPTHTGKGGN 114
T+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G +P K
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 115 SIWGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------Y 165
++E LK++ RG ++MA P++ +QFFI + L+ Y
Sbjct: 66 E----PIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 166 TIFGKVIDGFETLDNLE 182
+F +V++G + +D ++
Sbjct: 121 CVFAEVVEGMDVVDKIK 137
Score = 61.4 bits (149), Expect = 7e-12
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 VSLHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG 54
V+ HT+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG 53
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 74.8 bits (184), Expect = 1e-16
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 54 GDPTHTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDP------- 106
G+ T G I I L + P T NF+ L +Y+G FHR GF+VQTGDP
Sbjct: 1 GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60
Query: 107 --THTGK------------GGNSIWGKKFED--EFKE--TLKHSERGIVSMAN--NGPNT 146
TGK ++GK E+ + E L + G ++MA PN+
Sbjct: 61 PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS 120
Query: 147 NASQFFITYAAHAH-------LDLKYTIFGKVIDGFETLDNLE 182
+SQFF + LD +Y +FG V DG + L L+
Sbjct: 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK 163
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 73.8 bits (181), Expect = 7e-16
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 59 TGDIKIELFCEDCPKTCENFLALCAS------------DYYNGCIFHRNIKGFIVQTGDP 106
G + ELF + P+T ENF AL DY + H + I+ G+
Sbjct: 66 AGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGEL 125
Query: 107 THTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKY 165
S G DE ++ +H+ERG+++M + GP+T+ S F IT LD K
Sbjct: 126 DSFNV---SSTGTPIADEGYRH--RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQ 180
Query: 166 TIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYA 199
+FGK +D L+ LE LP++ +P+ +T +
Sbjct: 181 VVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVS 214
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 28.7 bits (64), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 159 AHLDLKYTIFGKVIDGF-ETLDNLEKLPVNPNHKPIF 194
L L + G+V+DGF LD E+LP + KP+F
Sbjct: 90 PSLHLSDHLLGRVLDGFGNPLDGKEQLP-KTHLKPLF 125
>gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase.
Length = 379
Score = 28.6 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 191 KPIFFITYAAHAHLDLKYTIFGKVIDGL 218
KP+FF+ Y A +HLD+ + KVI G+
Sbjct: 140 KPLFFLDYFATSHLDVD--LAEKVIKGI 165
Score = 27.8 bits (62), Expect = 4.6
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 118 GKKFEDEFKETLKHSERGI--VSMANNGPNTNASQ--FFITYAAHAHLDLKYTIFGKVID 173
G K + F ET H GI V+M+ N T+ ++ FF+ Y A +HLD+ + KVI
Sbjct: 107 GTKLKLAF-ETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVD--LAEKVIK 163
Query: 174 G 174
G
Sbjct: 164 G 164
>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain.
Length = 90
Score = 26.8 bits (60), Expect = 3.0
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 42 FHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTCENFLALC 82
F R K F+++ D + + + + P+ C+ LC
Sbjct: 38 FKR--KKFLIKLRDEDESKETTLTFYTP-SPRACKYLWKLC 75
>gnl|CDD|233574 TIGR01782, TonB-Xanth-Caul, TonB-dependent receptor. This model
represents a family of TonB-dependent outer-membrane
receptors which are found mainly in Xanthomonas and
Caulobacter. These appear to represent the expansion of
a paralogous family in that the 22 X. axonopodis (21 in
X. campestris) and 18 C. crescentus sequences are more
closely related to each other than any of the many
TonB-dependent receptors found in other species. In
fact, the Crescentus and Xanthomonas sequences are
inseparable on a phylogenetic tree using a PAM-weighted
neighbor-joining method, indicating that one of the two
genuses may have acquired this set of receptors from the
other. The mechanism by which this family is shared
between Xanthomonas, a gamma proteobacterial plant
pathogen and Caulobacter, an alpha proteobacterial
aquatic organism is unclear [Transport and binding
proteins, Porins].
Length = 845
Score = 28.1 bits (63), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 91 IFHRNIKGFIVQTG-DPTHTGKGG 113
+F+++IK FIV T T+ G GG
Sbjct: 647 VFYKDIKNFIVTTTSTETNDGGGG 670
Score = 27.7 bits (62), Expect = 6.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 41 IFHRNIKGFIVQTGD 55
+F+++IK FIV T
Sbjct: 647 VFYKDIKNFIVTTTS 661
>gnl|CDD|117137 pfam08562, Crisp, Crisp. This domain is found on Crisp proteins
which contain pfam00188 and has been termed the Crisp
domain. It is found in the mammalian reproductive tract
and the venom of reptiles, and has been shown to
regulate ryanodine receptor Ca2+ signalling. It
contains 10 conserved cysteines which are all involved
in disulphide bonds and is structurally related to the
ion channel inhibitor toxins BgK and ShK.
Length = 55
Score = 25.0 bits (55), Expect = 9.0
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 16/61 (26%)
Query: 18 CEDCPKTCENFLALCASDYYNGCIFH---RNIKGFIVQTGDPTHTGDIKIELFCEDCPKT 74
C DCP C+N LC N C + N Q G + L C T
Sbjct: 1 CGDCPSACDN--GLCT----NPCEYEDLYSNCDSLKKQAG-------CQHPLIKSGCKAT 47
Query: 75 C 75
C
Sbjct: 48 C 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.448
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,878,721
Number of extensions: 1091903
Number of successful extensions: 922
Number of sequences better than 10.0: 1
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 62
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)