RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8249
(232 letters)
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 259 bits (665), Expect = 2e-89
Identities = 108/138 (78%), Positives = 120/138 (86%), Gaps = 1/138 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDIKIE+FCE PKTCENFLALCAS+YYNGCIFHRNIKGF+VQTGDPT TG+GGNSI
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSI 66
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGKKFEDE+ E LKH+ RG+VSMANNGPNTN SQFFITY HLD+KYT+FGKVIDG E
Sbjct: 67 WGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLE 126
Query: 177 TLDNLEKLPVNP-NHKPI 193
TLD LEKLPVN ++P+
Sbjct: 127 TLDELEKLPVNEKTYRPL 144
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 259 bits (665), Expect = 5e-89
Identities = 70/137 (51%), Positives = 92/137 (67%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD ++EL+ PKTC NF LC +Y+ IFHR I F++Q GDPT TGKGG SI
Sbjct: 45 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSI 104
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+G+ FEDE + LKH+ GI+SM+NNGPNTN+SQFFIT A HLD K+TIF +V
Sbjct: 105 YGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMT 164
Query: 177 TLDNLEKLPVNPNHKPI 193
++N+ + +KPI
Sbjct: 165 CIENIASVQTTATNKPI 181
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 257 bits (659), Expect = 2e-88
Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I +EL+ + PKTC+NF L YYNG FHR IK F++Q GDPT TG+GG SI
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GK+FEDE LK + GI++MAN GP+TN SQFF+T A LD K+TIFG+V G
Sbjct: 78 YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
++ + + N +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 257 bits (658), Expect = 2e-88
Identities = 73/137 (53%), Positives = 92/137 (67%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI I LF ++C KT +NF + YYN CIFHR IK F+VQTGDP+ G GG SI
Sbjct: 12 TTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESI 71
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WG +FEDEF + L HS+ +VSMAN GPNTN SQFFIT LD K+T+FGKV G +
Sbjct: 72 WGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSK 131
Query: 177 TLDNLEKLPVNPNHKPI 193
+ ++EK+ + KP+
Sbjct: 132 IVLDIEKVRTDKRDKPL 148
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 257 bits (659), Expect = 7e-88
Identities = 67/137 (48%), Positives = 89/137 (64%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G I +EL+ + PKTC+NF L YYNG FHR IK F++Q GDPT TG+GG SI
Sbjct: 18 TSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASI 77
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
+GK+FEDE LK + GI++MAN GP+TN SQFF+T A LD K+TIFG+V G
Sbjct: 78 YGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIG 137
Query: 177 TLDNLEKLPVNPNHKPI 193
++ + + N +P+
Sbjct: 138 MVNRVGMVETNSQDRPV 154
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 255 bits (654), Expect = 1e-87
Identities = 74/138 (53%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T GDI +LF +CPKT ENF + YYNG FHR IKGF++QTGDPT TG GG SI
Sbjct: 28 TSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESI 87
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WG +FEDEF TL+H +SMAN G NTN SQFFIT LD K+T+FG+V G E
Sbjct: 88 WGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGME 147
Query: 177 TLDNLEKLPVNP-NHKPI 193
+ + + VNP KP
Sbjct: 148 VVQRISNVKVNPKTDKPY 165
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 253 bits (648), Expect = 1e-86
Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 4/141 (2%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD+K ELFC CPK C+NFLAL AS YY IFH+NIKGFI+Q GDPT TGKGG SI
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNG----PNTNASQFFITYAAHAHLDLKYTIFGKVI 172
+G+ F+DE LK+ RGI+SMA+ G PNTN SQFFITY++ L+ +Y IFGK+I
Sbjct: 83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142
Query: 173 DGFETLDNLEKLPVNPNHKPI 193
DGFETL+ LE P + +HKPI
Sbjct: 143 DGFETLNTLENCPSDKSHKPI 163
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 253 bits (649), Expect = 1e-86
Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GD+ +EL C+ PKTCENF+ LC YY+G IFHR+I+ F++Q GDPT TG GG S
Sbjct: 26 TNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESY 85
Query: 117 WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDGFE 176
WGK F+DEF+ L H+ RGI+SMAN+GPN+N SQFFIT+ + A+LD K+TIFG+V+ GF+
Sbjct: 86 WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145
Query: 177 TLDNLEKLPVNP-NHKPI 193
L +E + +P +P
Sbjct: 146 VLTAMENVESDPKTDRPK 163
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 252 bits (647), Expect = 2e-86
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 42 FHRNIKGFIVQTGDPT-------HT--GDIKIELFCEDCPKTCENFLALCASDYYNGCIF 92
H + G + + +P T GDI IEL+ ++ PK C NF+ LC YY+ IF
Sbjct: 7 HHHHSSGLVPRGSEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIF 66
Query: 93 HRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFF 152
HR + GFIVQ GDPT TG GG SI+G F+DEF L+ + RG+V+MAN G + N SQFF
Sbjct: 67 HRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFF 126
Query: 153 ITYAAHAHLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPI 193
T L+ K+TIFGKV D + L ++ ++ + +P
Sbjct: 127 FTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPH 168
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 248 bits (635), Expect = 2e-84
Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTG-----DPTHTGK 111
T G + IEL + P+ C++FL LCA Y++ IFHR I+ F++Q G P+ +
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 112 GGNSI-------WGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLK 164
S G FEDEF L H G++SMAN+G ++N S+FFIT+ + HL+ K
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 165 YTIFGKVIDGFETLDNLEKLPVNPNHKPI 193
+TIFG+V+ G + L EKL + KP+
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLETDKKDKPL 161
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 238 bits (609), Expect = 5e-80
Identities = 63/155 (40%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 58 HT--GDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGN- 114
HT GD+ +EL+ +CP C NF+ LC YY IFHR +K FIVQ GDPT TG+GG
Sbjct: 27 HTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86
Query: 115 -SIWGKKFEDEFKETLKHSERGIVSMANNGPN--------------TNASQFFITYAAHA 159
+ GK F+ E LK RG+V +AN G + TN +QFFIT A
Sbjct: 87 TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146
Query: 160 HLDLKYTIFGKVI-DGFETLDNLEKLPVNPNHKPI 193
L+ YT+FGKV L L V +P+
Sbjct: 147 VLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPM 181
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 210 bits (536), Expect = 2e-69
Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 20/154 (12%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALC---------------ASDYYNGCIFHRNIKGFIV 101
T+ GDIKI LF PKT NF+ L + +Y+G +FHR I+GF++
Sbjct: 30 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 89
Query: 102 QTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHL 161
Q GDPT TG+GG G KF DEF L+ + +++MAN GP TN SQFFIT HL
Sbjct: 90 QGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 162 DLKYTIFGKVID--GFETLDNLEKLPVNPNHKPI 193
+ ++TIFG+VID ++ + K + N +P
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPT 180
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 176 bits (449), Expect = 3e-56
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
G + ELF + CPKTCENF LC +Y C+FHR +K F+VQ GD +
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G+GG SI+G FEDE F +KH++ ++SMAN G +TN SQFFIT HLD +
Sbjct: 84 GNGRGGESIYGGFFEDESFA--VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G E + +E + KP
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKP 167
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 175 bits (447), Expect = 5e-56
Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
G I +LF + CPKTC+NFL LC Y G FHR +K F++Q GD +
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93
Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
GKGG SI+G F+DE F LKH ++SMAN G +TN SQFFIT HLD +
Sbjct: 94 GNGKGGESIYGGYFKDENFI--LKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG VI GFE ++ +E L + +P
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRP 177
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 175 bits (445), Expect = 8e-56
Identities = 65/143 (45%), Positives = 85/143 (59%), Gaps = 12/143 (8%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY--------YNGCIFHRNIKGFIVQTGDPT-HTG 110
G +KIELF + PKT ENF C ++ Y G FHR IK F++Q GD G
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84
Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
G SI+ F DE FK L+HS G++SMAN+GP+TN QFFIT + LD K+ +FG
Sbjct: 85 TGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 170 KVIDGFETLDNLEKLPVNPNHKP 192
K+IDG + +E +P PN+KP
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKP 165
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 175 bits (445), Expect = 1e-55
Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 15/146 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC-----------ASDYYNGCIFHRNIKGFIVQTGDPT- 107
G I +EL+ + P+TC NFL LC +Y G FHR IK F++Q GD T
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G GG SI+G F+DE F +KH E +VSMAN GPNTN SQFFIT HL+ +
Sbjct: 81 GDGTGGESIYGGMFDDEEFV--MKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHV 138
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FGKV+ G E + +E L N ++P
Sbjct: 139 VFGKVVSGQEVVTKIEYLKTNSKNRP 164
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 169 bits (431), Expect = 2e-53
Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + LF + PKT +NF+AL + Y FHR IK F++Q GD T G GG S
Sbjct: 30 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 89
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G++F DE FK LKH G VSMAN G +TN SQFFIT A LD K+ +FGKV++G
Sbjct: 90 IYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 147
Query: 175 FETLDNLEKLPVNPNHKP 192
E + +E + KP
Sbjct: 148 MEVVRKVESTKTDSRDKP 165
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 165 bits (420), Expect = 4e-52
Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I I LF +D P T ENF LC ++ Y IFHR I+ F++Q GD T G GG S
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KF DE +KH G +SMAN GPNTN SQFFIT A LD ++ +FGKV+DG
Sbjct: 86 IYGEKFADENLN--VKHFV-GALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142
Query: 175 FETLDNLEKLPVNPNHKP 192
+ + +EK N + +P
Sbjct: 143 MDVVLRIEKTKTNSHDRP 160
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 165 bits (420), Expect = 7e-52
Identities = 65/145 (44%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC----------ASDYYNGCIFHRNIKGFIVQTGDPT-H 108
G I +ELF + P T ENF ALC Y G FHR I F++Q GD T
Sbjct: 34 GRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG 93
Query: 109 TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTI 167
G GG SI+G KF DE F H ++SMAN GPNTN SQFFIT LD K+ +
Sbjct: 94 DGTGGESIYGSKFRDENFV--YTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVV 151
Query: 168 FGKVIDGFETLDNLEKLPVNPNHKP 192
FGKV++G E + ++EK + N KP
Sbjct: 152 FGKVLEGMEVVKSIEKCG-SQNGKP 175
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 164 bits (417), Expect = 1e-51
Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASD---------YYNGCIFHRNIKGFIVQTGDPT-HT 109
G I ELF + P+TCENF ALC + +Y IFHR I F+ Q GD T
Sbjct: 18 GRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGN 77
Query: 110 GKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIF 168
G GG SI+G+ F DE F +KH + G++SMAN GPNTN+SQFFIT LD K+ +F
Sbjct: 78 GSGGESIYGRSFTDENFN--MKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVF 135
Query: 169 GKVIDGFETLDNLEKLPVNPNHKP 192
GKVI+G + +EK +
Sbjct: 136 GKVIEGMNVVREMEKEGA-KSGYV 158
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 170 bits (432), Expect = 1e-51
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 16/146 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASD-----------YYNGCIFHRNIKGFIVQTGDPT- 107
G I +ELF + PKT ENF ALC + ++ GC FHR IK F++Q GD +
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 108 HTGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYT 166
G GG SI+G+KFEDE F KH + G++SMAN G NTN SQFFIT HLD K+
Sbjct: 90 QNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 167 IFGKVIDGFETLDNLEKLPVNPNHKP 192
+FG+VI G LE + V KP
Sbjct: 148 VFGQVIKGMGVAKILENVEVK-GEKP 172
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 164 bits (417), Expect = 1e-51
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 15/145 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC----------ASDYYNGCIFHRNIKGFIVQTGDPT-H 108
G I +EL+ + PKT NF ALC ++ G FHR I F++Q GD T
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 109 TGKGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTI 167
G GG SI+G+KF DE FK KH+ G++SMAN GPNTN SQFF+ LD K+ +
Sbjct: 78 NGTGGESIYGEKFPDENFK--EKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVV 135
Query: 168 FGKVIDGFETLDNLEKLPVNPNHKP 192
FG+V++G + + +E + + KP
Sbjct: 136 FGRVVEGLDVVKAVESNG-SQSGKP 159
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 162 bits (413), Expect = 6e-51
Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I +EL + P+T ENF ALC + Y+ C FHR I F+ Q GD G GG S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KF+DE F+ L+H G++SMAN+GPNTN SQFFI LD K+ +FG+V+DG
Sbjct: 85 IYGRKFDDENFQ--LRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDG 142
Query: 175 FETLDNLEKLPVNPNHKP 192
+ +E + + + K
Sbjct: 143 QNVVKKMESVG-SKSGKV 159
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 164 bits (416), Expect = 8e-51
Identities = 64/146 (43%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 60 GDIKIELFCEDCPKTCENFLALC--------ASDYYNGCIFHRNIKGFIVQTGDPT-HTG 110
G K ELF PKT ENF C Y IFHR IK F++Q GD H G
Sbjct: 74 GKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 133
Query: 111 KGGNSIWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFG 169
G SI+G+KF+DE F +KH + G++SMAN+GPNTN QFFIT LD K +FG
Sbjct: 134 SGSLSIYGEKFDDENFD--IKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 170 KVI--DGFETLDNLEKLPVNPNH-KP 192
++I D L +E + V P KP
Sbjct: 192 RIIDNDSLLLLKKIENVSVTPYIYKP 217
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 161 bits (409), Expect = 2e-50
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + +EL + PKT ENF ALC + Y G FHR I F+ Q GD T H G GG S
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G +F DE F LKH G++SMAN GPNTN SQFFI LD K+ +FG VI+G
Sbjct: 78 IYGSRFPDENFT--LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 175 FETLDNLEKLP 185
+ + +E
Sbjct: 136 MDVVKKIESFG 146
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 161 bits (409), Expect = 2e-50
Identities = 62/138 (44%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I++ L + P T ENF LC + + G FHR I F+ Q GD T H G GG S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+GKKF+DE F LKH+ G++SMAN+GPNTN SQFF+T LD K+ +FG+V +G
Sbjct: 86 IYGKKFDDENFI--LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 143
Query: 175 FETLDNLEKLPVNPNHKP 192
+ L +E + + KP
Sbjct: 144 LDVLRQIEAQG-SKDGKP 160
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 161 bits (409), Expect = 3e-50
Identities = 61/131 (46%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I ++L + PKT +NF LC Y G FHR I GF+VQ GD T H G GG S
Sbjct: 42 GRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRS 101
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KF DE F+ LKH++ GI+SMAN G +TN SQFFIT LD K+ +FG+V++G
Sbjct: 102 IYGEKFPDENFE--LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEG 159
Query: 175 FETLDNLEKLP 185
+ + + K
Sbjct: 160 MDVVHKIAKYG 170
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 162 bits (412), Expect = 4e-50
Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 33/166 (19%)
Query: 60 GDIKIELFCEDCPKTCENFLALC--------------------ASDYYNGCIFHRNIKGF 99
G ++I+LF + P ENF+ L + Y GC FH +
Sbjct: 29 GRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN 88
Query: 100 IVQTGDPT-HTGKGGNSIWGKKFEDEFKE--TLKHSERGIVSMA----NNGPNTNASQFF 152
+ +GD G +++ + H +G++S+ +G S F
Sbjct: 89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFM 148
Query: 153 ITYAAHA------HLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKP 192
IT LD + G+V G + LD + + +
Sbjct: 149 ITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRK 194
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 160 bits (406), Expect = 8e-50
Identities = 66/131 (50%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G + ELF + PKT ENF AL + Y G FHR I GF+ Q GD T H G GG S
Sbjct: 37 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 96
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KFEDE F LKH+ GI+SMAN GPNTN SQFFI A LD K+ +FGKV +G
Sbjct: 97 IYGEKFEDENFI--LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 154
Query: 175 FETLDNLEKLP 185
++ +E+
Sbjct: 155 MNIVEAMERFG 165
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 159 bits (404), Expect = 1e-49
Identities = 60/138 (43%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I +L+ E PKT +NF L + Y IFHR I F++Q GD T H G GG S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVIDG 174
I+G+KF DE F+ +KH++ G++SMAN G NTN SQFFIT + LD K+ +FG+VI+G
Sbjct: 77 IYGEKFADENFQ--VKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEG 134
Query: 175 FETLDNLEKLPVNPNHKP 192
+ + +E + + K
Sbjct: 135 LDIVRKVEGKG-SASGKT 151
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 157 bits (399), Expect = 6e-49
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ GDI I+ F + P+T +NFL C +YN IFHR I GF++Q G K
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK--A 63
Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------YTI 167
+ ++E LK+ RG ++MA P++ +QFFI + L+ Y +
Sbjct: 64 TKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 168 FGKVIDGFETLDNLEKLPVNPN 189
F +V+DG + +D ++ + +
Sbjct: 123 FAEVVDGMDEVDKIKGVATGRS 144
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 156 bits (397), Expect = 1e-48
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T+ G IK+EL PKT ENFL +Y+G IFHR I GF++Q G K +
Sbjct: 10 TNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPT- 68
Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLDLK--------YTI 167
+E LK+ + ++MA N P++ +QFFI + L+ Y +
Sbjct: 69 -DAPIANEANNGLKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAV 126
Query: 168 FGKVIDGFETLDNLEKLPVNP 188
FGKV++G + +D ++ +
Sbjct: 127 FGKVVEGQDIVDKIKAVKTGS 147
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 155 bits (393), Expect = 4e-48
Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 60 GDIKIELFCEDCPKTCENFLALCASDY---YNGCIFHRNIKGFIVQTGDPT-HTGKGGNS 115
G I LF +D PKT +NF LC Y FHR I F++Q GD T G GG S
Sbjct: 22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRS 81
Query: 116 IWGKKFEDE-FKETLKHSERGIVSMANNGPNTNASQFFITYAAHAHLDLKYTIFGKVID- 173
I+G KF DE F KH ++GI+SMAN GPNTN SQFFIT A + LD K+ +FG+V D
Sbjct: 82 IYGDKFADENFS--RKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADE 139
Query: 174 -GFETLDNLEKLPV-NPNHKPIFFIT 197
+ + +E L + + +
Sbjct: 140 KSYSVVKEIEALGSSSGSVRSNTRPK 165
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 152 bits (386), Expect = 4e-47
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSI 116
T G+I++EL + P + +NF+ S +YN FHR I GF++Q G T +
Sbjct: 11 TSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKP- 69
Query: 117 WGKKFEDEFKETLKHSERGIVSMA-NNGPNTNASQFFITYAAHAHLD-----LKYTIFGK 170
++E L++ RG ++MA ++ SQFFI A +A LD Y +FGK
Sbjct: 70 -NPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGK 127
Query: 171 VIDGFETLDNLEKLPVNPN 189
V+ G + D + ++P +
Sbjct: 128 VVKGMDVADKISQVPTHDV 146
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 144 bits (363), Expect = 2e-41
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 43/192 (22%)
Query: 5 LHTDVGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKI 64
+ + +I L + P T NF+ L +Y+G R GF+VQTGDP + I
Sbjct: 183 PNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFI 241
Query: 65 ELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFED- 123
D R + I+ TG+ +G E+
Sbjct: 242 --------------------DPSTEKT--RTVPLEIMVTGE-------KTPFYGSTLEEL 272
Query: 124 ---EFKETLKHSERGIVSMANNG--PNTNASQFFI-------TYAAHAHLDLKYTIFGKV 171
+ + + + G ++MA ++ +SQ F T + LD +Y +FG V
Sbjct: 273 GLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYV 332
Query: 172 IDGFETLDNLEK 183
D + L +L+
Sbjct: 333 TDNEDFLADLKV 344
Score = 135 bits (341), Expect = 3e-38
Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 64/197 (32%)
Query: 57 THTGDIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGKG---- 112
+I L + P T NF+ L +Y+G R GF+VQTGDP +G
Sbjct: 185 IEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFIDP 243
Query: 113 -----------------GNSIWGKKFED----EFKETLKHSERGIVSMANNG--PNTNAS 149
+G E+ + + + + G ++MA ++ +S
Sbjct: 244 STEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSS 303
Query: 150 QFFITYAAHAHLDLKYTIFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHLDLKYT 209
Q F +T + LD +Y
Sbjct: 304 QVFWLLKESE------------------------------------LTPSNSNILDGRYA 327
Query: 210 IFGKVIDGLETLDNLEK 226
+FG V D + L +L+
Sbjct: 328 VFGYVTDNEDFLADLKV 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 9e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 32/143 (22%)
Query: 85 DYYNGC-IFHRNIKGFIVQTGDPTHTGKGGNSIWGKKFEDEFKETLKHSERGIVSMANNG 143
++ +F + I PT IW + + + + S+
Sbjct: 373 KMFDRLSVFPPSAH--I-----PTILLS---LIWFDVIKSDVMVVVNKLHK--YSLVEKQ 420
Query: 144 PNTNASQFFITYAAHA-HLDLK------YTIFGKVIDGFETLDNLEKLPVNPNHKPIFFI 196
P + T + + +L+LK Y + ++D + + + P + +F
Sbjct: 421 PKES------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 197 TYAAHAHL-----DLKYTIFGKV 214
++ H HL + T+F V
Sbjct: 475 SHIGH-HLKNIEHPERMTLFRMV 496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.003
Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 50/171 (29%)
Query: 98 GFIVQTGDPTHTGKGG---NSIWGKKFEDEFKETLK----HSERGIVSMANNGPNTNASQ 150
G++ +P+ G+ N +FE+ + L+ H+ + T
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCL-TEFENCY---LEGNDIHAL--AAKLLQENDTTLVKT 119
Query: 151 FFIT---YAAHAHLD-----------LK---------YTIF---GKVIDGFETLDNLEKL 184
+ A + IF G D FE L +L +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 185 PVNPNHKPIFFITYAA-------HAHLDLKYTIFGKVIDGLETLDNLEKLP 228
+ I ++A LD + +F + ++ LE L+N P
Sbjct: 180 Y-HVLVGD--LIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTP 226
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.49
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 29/61 (47%)
Query: 11 DIKIELFCEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCED 70
++ I L C +C + + G ++ C
Sbjct: 17 NLNIVLTCPECKVYPPKIV----ERFSEG-------------------------DVVCAL 47
Query: 71 C 71
C
Sbjct: 48 C 48
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 174 GFETLDNLEKLPVNPNHKPIFFITYAAHAHLD 205
G E N +P +T HAHLD
Sbjct: 35 GKEEARNHAPFGFDPKEVDAVLLT---HAHLD 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 28.0 bits (63), Expect = 2.1
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 160 HLDLKYT-IFGKVIDGFETLDNLEKLPVNPNHKPIFFITYAAH----AHLDLKYTIFGKV 214
L + + I L +L L ++ + +T +DL Y
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 215 IDGLETLDNLEKL 227
I L+TL L+ L
Sbjct: 152 IMPLKTLPELKSL 164
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 27.6 bits (61), Expect = 2.8
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 10/58 (17%)
Query: 18 CEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTC 75
C DCP C N L +Y N + E + CP +C
Sbjct: 156 CADCPSACVNRLCTNPCNYNNDFS----------NCKSLAKKSKCQTEWIKKKCPASC 203
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 27.5 bits (62), Expect = 3.8
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 160 HLDLKYTIFGKVIDGFETLDNLEKLPVNPNH--KPIFFITYAAHAHLDLKYTIFGKVIDG 217
+L + I + L NL +L +N ++ L+L +
Sbjct: 92 NLYIGTNKI-TDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP 150
Query: 218 LETLDNLEKL 227
L + L L
Sbjct: 151 LSNMTGLNYL 160
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 27.0 bits (59), Expect = 5.8
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 172 IDGFETLDNLEKLPVNPNHKPIFFITYAAHA----HLDLKYT-IFGKVIDGLETLDNLEK 226
+ G + L N+ KL +N N + I + L L I K + L+ L L+
Sbjct: 58 VQGIQYLPNVTKLFLNGNK--LTDIKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKS 113
Query: 227 L 227
L
Sbjct: 114 L 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 26.6 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 172 IDGFETLDNLEKLPVNPNH-KPIFFITYAAH-AHLDLKYT-IFGKVIDGLETLDNLEKL 227
+ G + L N+ KL +N N I + + L L + K + L+ L L+ L
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSL 117
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 26.3 bits (58), Expect = 7.0
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 146 TNASQFFITYAAHAHLDLKYTIFGKVIDG 174
T+ D IF K+
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKT 40
Score = 26.3 bits (58), Expect = 7.1
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 192 PIFFITYAAHAHLDLKYTIFGKVIDGL 218
+ T+ D IF K+
Sbjct: 15 EVKPETHINLKVSDGSSEIFFKIKKTT 41
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 26.4 bits (58), Expect = 7.0
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 10/58 (17%)
Query: 18 CEDCPKTCENFLALCASDYYNGCIFHRNIKGFIVQTGDPTHTGDIKIELFCEDCPKTC 75
C DCP C+N L YN + + +CP +C
Sbjct: 167 CGDCPSACDNGLCTNPCTIYNKL----------TNCDSLLKQSSCQDDWIKSNCPASC 214
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 26.2 bits (58), Expect = 7.4
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 170 KVIDGFETLDNLEKLPVNPNHKPIFFITYAAHAHL-DLKYTIFGK-VIDGLETLDNLEKL 227
+ +DGF L L+ L VN N I I L DL I + L LD L L
Sbjct: 55 RKLDGFPLLRRLKTLLVNNNR--ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112
Query: 228 P 228
Sbjct: 113 K 113
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 26.5 bits (57), Expect = 8.4
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 28/105 (26%)
Query: 18 CEDCPKTCENFLALCASD---YYNGCIFHR-----NIKGFIVQTGDPTH----------- 58
C +C D Y N C + + + G
Sbjct: 89 CAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSS 148
Query: 59 ------TGDIKIELFCEDCPKTCENFLALCASD---YYNGCIFHR 94
T + CP+ + LC +D Y + C +
Sbjct: 149 TCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRK 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.448
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,714,751
Number of extensions: 218109
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 151
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)