BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy825
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 436 EKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETA-TWK--QRWEKSHEAYLEMSN 492
E +DE + EI+ + S +E + + I +L + A W +++ K + + N
Sbjct: 163 EYFDELR-------EIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPKGLDILQWLHN 215
Query: 493 EKTKAESELITTCR---------QLAALLKLCRTLQTERAEMLAKLNGAGGYS 536
+++ +++ + + QLA + C+TL E E+L + +G G+S
Sbjct: 216 PESQPDTDYLVSAPVSFPLIGLVQLAHYMITCKTLGREPGELLERFSGTTGHS 268
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 326
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 323 LTREKLENLCRELQKQNKAI---REENLQKFREE----EEKRKNVSVKLENTLSEISNQV 375
L R+K + RE AI R +N+ F E + ++ L+E+ +
Sbjct: 147 LLRDKFRDFARE----TGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 202
Query: 376 QESNNKTMKLRGDNLDMAKKFR---ELLIQYDEKEQEL---LDYKAKYLE-MQKTENGLR 428
E + M+L + D+ + F E+L DEK +EL + A E +
Sbjct: 203 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
Query: 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477
+ + + G + +FQ +R +AG K+E + NK ++ +A W+
Sbjct: 263 RDVHLLGVQVQQFQDVATRLQTAYAGEKAE-----AIQNKEQEVSAAWQ 306
>pdb|3EDU|A Chain A, Crystal Structure Of The Ankyrin-Binding Domain Of Human
Erythroid Spectrin
Length = 218
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 323 LTREKLENLCRELQKQNKAI---REENLQKFREE----EEKRKNVSVKLENTLSEISNQV 375
L R+K + RE AI R +N+ F E + ++ L+E+ +
Sbjct: 38 LLRDKFRDFARE----TGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 93
Query: 376 QESNNKTMKLRGDNLDMAKKFR---ELLIQYDEKEQEL---LDYKAKYLE-MQKTENGLR 428
E + M+L + D+ + F E+L DEK +EL + A E +
Sbjct: 94 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 153
Query: 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477
+++ + G + +FQ +R +AG K+E + NK ++ +A W+
Sbjct: 154 RELHLLGVQVQQFQDVATRLQTAYAGEKAE-----AIQNKEQEVSAAWQ 197
>pdb|3F57|A Chain A, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
pdb|3F57|B Chain B, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
Length = 225
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 323 LTREKLENLCRELQKQNKAI---REENLQKFREE----EEKRKNVSVKLENTLSEISNQV 375
L R+K + RE AI R +N+ F E + ++ L+E+ +
Sbjct: 45 LLRDKFRDFARE----TGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 100
Query: 376 QESNNKTMKLRGDNLDMAKKFR---ELLIQYDEKEQEL---LDYKAKYLE-MQKTENGLR 428
E + M+L + D+ + F E+L DEK +EL + A E +
Sbjct: 101 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 160
Query: 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477
+ + + G + +FQ +R +AG K+E + NK ++ +A W+
Sbjct: 161 RDVHLLGVQVQQFQDVATRLQTAYAGEKAE-----AIQNKEQEVSAAWQ 204
>pdb|3TNU|B Chain B, Heterocomplex Of Coil 2b Domains Of Human Intermediate
Filament Proteins, Keratin 5 (Krt5) And Keratin 14
(Krt14)
Length = 129
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKE 472
S Y KY+E QQT R + K E+ M+ I +L E
Sbjct: 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAE 51
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
Length = 326
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 323 LTREKLENLCRELQKQNKAI---REENLQKFREE----EEKRKNVSVKLENTLSEISNQV 375
L R+K + RE AI R +N+ F E + ++ L+E+ +
Sbjct: 147 LLRDKFRDFARE----TGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADL 202
Query: 376 QESNNKTMKLRGDNLDMAKKFR---ELLIQYDEKEQEL---LDYKAKYLE-MQKTENGLR 428
E + M+L + D+ + F E+L DEK +EL + A E +
Sbjct: 203 LELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
Query: 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477
+ + + G + +FQ +R +AG K+E + NK ++ +A W+
Sbjct: 263 RDVHLLGVQVQQFQDVATRLQTAYAGEKAE-----AIQNKEQEVSAAWQ 306
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
NK +R + L F + E + SV + ++L +I NQ+ + N+
Sbjct: 55 NKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPND 96
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
NK +R + L F + E + SV + ++L +I NQ+ + N+
Sbjct: 54 NKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPND 95
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
NK +R + L F + E + SV + ++L +I NQ+ + N+
Sbjct: 55 NKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPND 96
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
NK +R + L F + E + SV + ++L +I NQ+ + N+
Sbjct: 54 NKVVRFDKLPGFGDXIEAQCGTSVNVHSSLRDILNQITKPND 95
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
NK +R + L F + E + SV + ++L +I NQ+ + N+
Sbjct: 55 NKVVRFDKLPGFGDXIEAQCGTSVNVHSSLRDILNQITKPND 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.304 0.122 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,303,311
Number of Sequences: 62578
Number of extensions: 398748
Number of successful extensions: 1216
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 109
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (25.4 bits)