Query psy825
Match_columns 565
No_of_seqs 121 out of 143
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 22:32:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09728 Taxilin: Myosin-like 100.0 2.5E-75 5.4E-80 586.3 37.6 268 255-522 3-309 (309)
2 KOG1850|consensus 100.0 4.5E-64 9.8E-69 505.9 37.0 278 256-534 7-327 (391)
3 TIGR02168 SMC_prok_B chromosom 98.3 0.012 2.6E-07 66.7 38.6 74 453-526 869-942 (1179)
4 TIGR02168 SMC_prok_B chromosom 98.3 0.014 2.9E-07 66.3 38.7 28 275-302 678-705 (1179)
5 TIGR02169 SMC_prok_A chromosom 98.3 0.017 3.8E-07 65.9 39.5 132 392-523 803-934 (1164)
6 COG1196 Smc Chromosome segrega 98.0 0.08 1.7E-06 63.0 38.1 110 425-534 831-940 (1163)
7 TIGR00606 rad50 rad50. This fa 97.8 0.11 2.4E-06 62.5 36.9 44 488-531 1050-1093(1311)
8 PRK02224 chromosome segregatio 97.8 0.11 2.3E-06 59.2 35.4 80 407-486 411-504 (880)
9 PRK04778 septation ring format 97.8 0.053 1.1E-06 59.9 30.6 176 272-449 254-438 (569)
10 KOG0161|consensus 97.5 0.15 3.3E-06 63.8 32.7 73 460-532 1346-1419(1930)
11 KOG0161|consensus 97.5 0.32 7E-06 61.1 35.2 264 262-533 994-1307(1930)
12 KOG4674|consensus 97.5 0.19 4.1E-06 62.5 32.3 243 278-523 1164-1439(1822)
13 PF07888 CALCOCO1: Calcium bin 97.5 0.3 6.6E-06 54.7 37.2 98 277-375 139-236 (546)
14 KOG4674|consensus 97.5 0.51 1.1E-05 59.0 35.3 252 273-524 51-355 (1822)
15 PF00038 Filament: Intermediat 97.4 0.17 3.7E-06 50.8 34.5 93 432-524 191-287 (312)
16 COG1196 Smc Chromosome segrega 97.3 0.77 1.7E-05 54.9 36.1 105 413-517 826-930 (1163)
17 KOG1029|consensus 97.0 1 2.2E-05 52.6 29.7 114 413-533 435-555 (1118)
18 PF07888 CALCOCO1: Calcium bin 97.0 0.99 2.2E-05 50.8 37.0 156 366-524 262-435 (546)
19 PF05483 SCP-1: Synaptonemal c 96.9 1.2 2.6E-05 51.4 35.7 118 413-530 532-653 (786)
20 TIGR00606 rad50 rad50. This fa 96.8 2.1 4.5E-05 52.0 34.0 33 274-306 836-868 (1311)
21 KOG0612|consensus 96.7 1.9 4E-05 52.5 29.5 64 477-540 713-776 (1317)
22 KOG0250|consensus 96.7 0.89 1.9E-05 54.4 26.8 163 333-495 319-488 (1074)
23 PF05667 DUF812: Protein of un 96.5 2 4.4E-05 48.7 30.7 227 280-519 320-567 (594)
24 KOG0250|consensus 96.4 3.5 7.6E-05 49.6 32.3 240 273-519 220-463 (1074)
25 PF13851 GAS: Growth-arrest sp 96.4 1.1 2.5E-05 43.9 22.6 121 278-412 45-168 (201)
26 PRK03918 chromosome segregatio 96.4 2.6 5.7E-05 48.0 36.1 24 503-526 456-479 (880)
27 KOG0933|consensus 96.4 3.6 7.8E-05 49.4 31.7 251 262-520 672-934 (1174)
28 PRK11637 AmiB activator; Provi 96.3 1.9 4E-05 46.1 27.2 82 442-523 176-257 (428)
29 PF00261 Tropomyosin: Tropomyo 95.8 2.3 5E-05 42.2 26.7 71 417-487 157-227 (237)
30 PRK11637 AmiB activator; Provi 95.7 3.5 7.6E-05 44.0 32.0 28 409-436 171-198 (428)
31 KOG0996|consensus 95.7 7.3 0.00016 47.6 31.4 65 415-479 507-571 (1293)
32 PRK03918 chromosome segregatio 95.7 5.2 0.00011 45.7 38.9 39 496-534 395-433 (880)
33 PF09755 DUF2046: Uncharacteri 95.5 4 8.7E-05 43.3 30.6 102 412-520 182-293 (310)
34 PF00038 Filament: Intermediat 95.3 3.6 7.8E-05 41.5 31.8 137 390-533 165-310 (312)
35 PF01576 Myosin_tail_1: Myosin 95.2 0.0053 1.1E-07 70.9 0.0 240 271-535 117-371 (859)
36 PF06160 EzrA: Septation ring 95.2 7 0.00015 43.7 30.8 192 272-465 250-459 (560)
37 TIGR03185 DNA_S_dndD DNA sulfu 95.1 7.6 0.00017 43.8 35.4 101 427-527 396-501 (650)
38 PF12128 DUF3584: Protein of u 94.9 13 0.00027 45.3 36.7 67 421-487 815-881 (1201)
39 PF10368 YkyA: Putative cell-w 94.9 4.5 9.8E-05 40.0 19.7 135 338-475 62-196 (204)
40 KOG4643|consensus 94.8 13 0.00029 45.0 33.9 265 268-533 178-557 (1195)
41 KOG0933|consensus 94.7 5.9 0.00013 47.7 22.5 167 368-534 679-864 (1174)
42 PF13870 DUF4201: Domain of un 94.4 4.8 0.0001 38.1 22.0 153 363-519 17-172 (177)
43 PF12128 DUF3584: Protein of u 94.1 18 0.00039 44.0 36.2 71 465-535 470-540 (1201)
44 PHA02562 46 endonuclease subun 93.9 11 0.00025 40.7 33.3 34 281-314 174-207 (562)
45 KOG0964|consensus 93.7 21 0.00046 43.3 28.7 114 411-524 310-447 (1200)
46 PRK04863 mukB cell division pr 93.4 28 0.00061 43.8 31.2 66 469-535 556-621 (1486)
47 KOG4643|consensus 93.1 27 0.00058 42.5 31.4 177 276-467 396-588 (1195)
48 PF13851 GAS: Growth-arrest sp 92.9 11 0.00023 37.3 21.7 159 359-533 2-174 (201)
49 PF05010 TACC: Transforming ac 92.7 12 0.00026 37.6 25.8 96 413-518 102-201 (207)
50 PF05701 WEMBL: Weak chloropla 92.6 20 0.00044 39.9 35.5 102 273-375 115-220 (522)
51 PF09728 Taxilin: Myosin-like 92.5 16 0.00034 38.4 34.6 93 426-518 164-263 (309)
52 KOG0980|consensus 92.3 31 0.00068 41.4 30.9 86 379-471 430-515 (980)
53 PF04849 HAP1_N: HAP1 N-termin 92.2 18 0.0004 38.4 21.5 118 332-456 169-303 (306)
54 PF05557 MAD: Mitotic checkpoi 92.1 0.042 9.2E-07 62.0 0.0 138 364-520 169-309 (722)
55 KOG0980|consensus 91.9 34 0.00075 41.1 27.0 216 296-529 334-559 (980)
56 COG1340 Uncharacterized archae 91.4 22 0.00047 37.8 28.6 143 391-540 135-285 (294)
57 KOG0964|consensus 90.9 46 0.001 40.6 34.0 108 422-529 664-771 (1200)
58 PF09726 Macoilin: Transmembra 90.8 39 0.00084 39.5 23.6 126 339-472 427-560 (697)
59 KOG0977|consensus 90.4 37 0.00081 38.8 25.1 41 495-535 352-392 (546)
60 PF15070 GOLGA2L5: Putative go 90.1 41 0.00089 38.8 30.3 81 420-504 158-242 (617)
61 PF08614 ATG16: Autophagy prot 89.9 4.4 9.6E-05 39.1 11.4 106 426-531 78-183 (194)
62 PLN02939 transferase, transfer 89.8 43 0.00094 40.6 21.2 83 361-447 302-394 (977)
63 PF01576 Myosin_tail_1: Myosin 89.0 0.12 2.6E-06 60.1 0.0 257 275-535 202-483 (859)
64 KOG0999|consensus 88.9 52 0.0011 38.2 28.4 105 393-535 151-255 (772)
65 KOG2129|consensus 88.7 46 0.001 37.3 21.0 72 450-521 190-275 (552)
66 PF12325 TMF_TATA_bd: TATA ele 88.6 16 0.00034 33.9 13.4 99 285-402 20-118 (120)
67 PF10174 Cast: RIM-binding pro 88.4 62 0.0013 38.4 33.7 249 276-532 310-595 (775)
68 KOG0976|consensus 87.7 73 0.0016 38.5 30.8 72 418-489 266-341 (1265)
69 PRK01156 chromosome segregatio 87.6 63 0.0014 37.7 37.7 28 354-381 464-491 (895)
70 TIGR00634 recN DNA repair prot 87.0 56 0.0012 36.5 23.7 48 430-477 295-342 (563)
71 KOG0978|consensus 87.0 71 0.0015 37.6 31.0 35 322-356 396-430 (698)
72 PF08614 ATG16: Autophagy prot 86.9 8.4 0.00018 37.2 11.1 108 374-481 75-182 (194)
73 PF10174 Cast: RIM-binding pro 86.9 75 0.0016 37.8 31.4 244 281-530 238-496 (775)
74 TIGR03752 conj_TIGR03752 integ 86.6 5.1 0.00011 44.6 10.5 81 441-521 57-138 (472)
75 PRK04778 septation ring format 86.5 61 0.0013 36.4 29.7 93 438-530 312-421 (569)
76 PF12718 Tropomyosin_1: Tropom 86.1 31 0.00066 32.5 17.1 57 427-483 78-134 (143)
77 COG0419 SbcC ATPase involved i 85.8 82 0.0018 37.2 36.4 32 388-419 397-428 (908)
78 PHA02562 46 endonuclease subun 85.7 58 0.0013 35.4 33.6 17 292-308 178-194 (562)
79 KOG0996|consensus 85.6 1.1E+02 0.0023 38.3 32.7 159 318-480 333-495 (1293)
80 KOG4360|consensus 85.6 74 0.0016 36.5 18.7 62 384-445 237-298 (596)
81 TIGR03185 DNA_S_dndD DNA sulfu 85.3 73 0.0016 36.2 30.8 33 481-513 431-463 (650)
82 PRK01156 chromosome segregatio 85.3 83 0.0018 36.8 36.5 34 453-486 412-445 (895)
83 PF04156 IncA: IncA protein; 85.0 35 0.00076 32.3 16.6 29 449-477 122-150 (191)
84 PF05622 HOOK: HOOK protein; 85.0 0.28 6E-06 55.7 0.0 219 273-501 310-546 (713)
85 PF10226 DUF2216: Uncharacteri 84.4 13 0.00028 37.4 11.2 96 343-442 18-121 (195)
86 PF05557 MAD: Mitotic checkpoi 84.3 1.3 2.8E-05 50.4 4.9 112 413-531 404-535 (722)
87 KOG0612|consensus 83.8 1.3E+02 0.0028 37.8 32.3 76 268-347 449-532 (1317)
88 PF05622 HOOK: HOOK protein; 82.8 0.38 8.3E-06 54.5 0.0 99 413-529 320-421 (713)
89 KOG0018|consensus 82.7 1.3E+02 0.0029 37.1 29.7 194 325-531 703-902 (1141)
90 TIGR01843 type_I_hlyD type I s 82.7 62 0.0014 33.3 21.0 83 407-489 150-235 (423)
91 PF10168 Nup88: Nuclear pore c 82.3 49 0.0011 38.8 16.3 59 390-448 596-658 (717)
92 PF13166 AAA_13: AAA domain 82.2 93 0.002 35.0 24.8 33 498-530 423-455 (712)
93 KOG0946|consensus 82.0 1.3E+02 0.0028 36.5 24.2 176 352-527 650-883 (970)
94 PF05483 SCP-1: Synaptonemal c 81.8 1.2E+02 0.0026 36.0 33.1 123 277-402 502-630 (786)
95 PF15254 CCDC14: Coiled-coil d 81.7 1.1E+02 0.0023 36.8 18.5 140 384-533 391-563 (861)
96 PF10212 TTKRSYEDQ: Predicted 81.1 1.1E+02 0.0023 35.0 22.8 231 258-511 269-513 (518)
97 COG1340 Uncharacterized archae 79.7 91 0.002 33.3 36.6 204 310-521 28-250 (294)
98 PF12777 MT: Microtubule-bindi 78.1 96 0.0021 32.7 20.0 89 427-515 226-314 (344)
99 KOG0946|consensus 77.8 1.7E+02 0.0037 35.4 25.2 36 463-498 847-882 (970)
100 PF03938 OmpH: Outer membrane 77.6 57 0.0012 29.8 14.3 56 322-377 72-127 (158)
101 PF15397 DUF4618: Domain of un 77.1 1E+02 0.0022 32.4 28.9 213 327-553 10-243 (258)
102 COG0419 SbcC ATPase involved i 76.9 1.7E+02 0.0036 34.8 35.8 72 453-524 371-442 (908)
103 PF00261 Tropomyosin: Tropomyo 76.9 84 0.0018 31.4 30.9 77 407-483 126-202 (237)
104 COG5185 HEC1 Protein involved 76.5 1.3E+02 0.0029 34.4 16.5 88 457-545 288-375 (622)
105 PRK09039 hypothetical protein; 76.3 1.1E+02 0.0024 32.5 21.0 89 391-479 78-166 (343)
106 KOG0962|consensus 76.3 2.2E+02 0.0048 35.9 33.2 66 465-532 1016-1081(1294)
107 PF08580 KAR9: Yeast cortical 76.1 1.7E+02 0.0036 34.4 19.0 141 277-432 195-347 (683)
108 PF05010 TACC: Transforming ac 75.6 95 0.0021 31.4 22.6 116 395-510 41-172 (207)
109 PRK10361 DNA recombination pro 73.5 1.7E+02 0.0036 33.2 20.9 63 310-372 61-123 (475)
110 KOG0288|consensus 73.4 1.2E+02 0.0027 34.0 15.2 66 283-348 8-73 (459)
111 PF15619 Lebercilin: Ciliary p 72.8 1E+02 0.0023 30.6 21.3 35 498-532 156-190 (194)
112 PF09755 DUF2046: Uncharacteri 72.5 1.4E+02 0.0031 32.1 27.6 175 277-521 23-200 (310)
113 PF09602 PhaP_Bmeg: Polyhydrox 71.9 1.1E+02 0.0024 30.3 21.2 28 421-448 135-162 (165)
114 KOG0977|consensus 71.0 2E+02 0.0044 33.1 27.8 87 433-522 272-365 (546)
115 PF04111 APG6: Autophagy prote 71.0 90 0.0019 32.9 13.2 87 413-513 48-134 (314)
116 PF14662 CCDC155: Coiled-coil 70.8 1.2E+02 0.0027 30.6 25.1 165 333-529 11-188 (193)
117 PRK05561 DNA topoisomerase IV 70.6 1.9E+02 0.0041 34.2 16.8 129 328-467 352-482 (742)
118 PRK04863 mukB cell division pr 69.0 3.4E+02 0.0073 34.9 33.7 181 359-542 911-1124(1486)
119 KOG4083|consensus 69.0 37 0.0008 34.2 9.3 76 306-381 70-145 (192)
120 KOG0982|consensus 68.9 2.1E+02 0.0046 32.5 17.6 128 364-514 227-354 (502)
121 PF10168 Nup88: Nuclear pore c 68.7 2.5E+02 0.0054 33.2 19.9 50 270-320 532-583 (717)
122 KOG0243|consensus 68.1 3.1E+02 0.0066 34.1 19.8 25 441-465 488-512 (1041)
123 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.1 99 0.0021 28.4 15.3 29 454-482 102-130 (132)
124 PF12325 TMF_TATA_bd: TATA ele 67.1 1.1E+02 0.0024 28.5 11.9 95 321-420 14-108 (120)
125 KOG0804|consensus 66.3 2E+02 0.0043 32.7 15.0 57 363-419 386-446 (493)
126 COG1579 Zn-ribbon protein, pos 65.7 1.7E+02 0.0037 30.3 22.8 46 392-437 36-81 (239)
127 PF09789 DUF2353: Uncharacteri 64.7 2.1E+02 0.0045 30.9 21.7 64 468-531 158-221 (319)
128 TIGR02449 conserved hypothetic 64.6 57 0.0012 27.7 8.3 53 270-332 3-55 (65)
129 KOG4302|consensus 64.3 3E+02 0.0065 32.5 27.9 148 323-472 72-255 (660)
130 KOG1029|consensus 64.0 3.4E+02 0.0074 33.1 32.8 75 365-439 415-503 (1118)
131 PF06785 UPF0242: Uncharacteri 63.5 2.1E+02 0.0045 31.6 14.2 60 443-502 113-172 (401)
132 PF10212 TTKRSYEDQ: Predicted 62.8 2.9E+02 0.0062 31.8 18.3 102 355-456 408-514 (518)
133 PF10224 DUF2205: Predicted co 62.1 27 0.00058 30.6 6.2 40 363-402 27-66 (80)
134 KOG0249|consensus 61.4 3.6E+02 0.0079 32.6 17.0 83 260-343 94-180 (916)
135 PF11932 DUF3450: Protein of u 61.3 1.2E+02 0.0027 30.3 11.6 34 500-533 64-97 (251)
136 PF12718 Tropomyosin_1: Tropom 60.3 1.5E+02 0.0034 27.9 19.5 117 391-532 18-134 (143)
137 PF10234 Cluap1: Clusterin-ass 59.2 1.5E+02 0.0033 31.2 12.1 79 363-441 166-248 (267)
138 COG1579 Zn-ribbon protein, pos 58.8 2.3E+02 0.005 29.4 16.1 95 427-521 50-146 (239)
139 PF10211 Ax_dynein_light: Axon 58.7 1.9E+02 0.0041 28.4 16.4 61 453-513 123-184 (189)
140 KOG0993|consensus 58.5 3.2E+02 0.007 31.0 21.6 153 306-469 296-495 (542)
141 KOG0995|consensus 58.4 3.6E+02 0.0077 31.5 33.9 44 275-318 260-303 (581)
142 PF09726 Macoilin: Transmembra 58.2 3.8E+02 0.0081 31.7 25.0 53 427-479 592-651 (697)
143 PF06005 DUF904: Protein of un 57.8 1.2E+02 0.0026 25.9 10.4 40 438-477 6-45 (72)
144 PF11932 DUF3450: Protein of u 57.5 2.1E+02 0.0046 28.7 12.9 52 391-442 67-118 (251)
145 PF06705 SF-assemblin: SF-asse 56.8 2.2E+02 0.0048 28.6 26.8 187 323-515 2-191 (247)
146 PF04111 APG6: Autophagy prote 56.4 2.5E+02 0.0055 29.7 13.3 82 450-531 43-124 (314)
147 PF10458 Val_tRNA-synt_C: Valy 56.3 44 0.00094 27.4 6.2 27 455-481 2-28 (66)
148 KOG4360|consensus 56.1 3.8E+02 0.0083 31.1 23.4 181 257-447 62-279 (596)
149 PF00901 Orbi_VP5: Orbivirus o 55.7 3.3E+02 0.0073 31.2 14.6 130 332-466 86-221 (508)
150 PF13747 DUF4164: Domain of un 55.6 1.5E+02 0.0032 26.2 10.4 50 298-347 35-84 (89)
151 cd07652 F-BAR_Rgd1 The F-BAR ( 55.4 2.3E+02 0.0051 28.5 13.7 45 291-338 100-144 (234)
152 PF08317 Spc7: Spc7 kinetochor 55.2 2.7E+02 0.0059 29.2 26.9 58 449-506 208-265 (325)
153 PF02403 Seryl_tRNA_N: Seryl-t 54.5 1.5E+02 0.0032 25.9 11.4 95 432-527 5-102 (108)
154 KOG0239|consensus 53.7 4.4E+02 0.0095 31.1 17.8 89 437-535 221-315 (670)
155 PF13094 CENP-Q: CENP-Q, a CEN 53.6 1.2E+02 0.0026 28.5 9.4 80 264-344 4-83 (160)
156 KOG0804|consensus 53.5 3.9E+02 0.0085 30.5 15.6 97 425-532 347-447 (493)
157 PF05911 DUF869: Plant protein 52.9 4.8E+02 0.01 31.4 23.3 121 413-533 594-714 (769)
158 KOG3647|consensus 52.5 1.2E+02 0.0025 32.7 9.9 77 364-440 110-190 (338)
159 PF10498 IFT57: Intra-flagella 52.5 3.4E+02 0.0074 29.5 16.6 69 413-481 250-318 (359)
160 PF07989 Microtub_assoc: Micro 52.1 1.1E+02 0.0023 26.4 8.1 61 460-520 3-71 (75)
161 TIGR03752 conj_TIGR03752 integ 51.6 2.5E+02 0.0053 32.0 12.8 93 263-376 47-140 (472)
162 PF08912 Rho_Binding: Rho Bind 50.2 45 0.00098 28.7 5.5 48 384-431 7-57 (69)
163 PF12777 MT: Microtubule-bindi 50.0 32 0.0007 36.1 5.7 83 442-531 220-302 (344)
164 PF05278 PEARLI-4: Arabidopsis 49.9 3.4E+02 0.0075 28.8 16.7 65 448-512 198-262 (269)
165 KOG4673|consensus 49.7 5.5E+02 0.012 31.1 28.6 59 465-523 705-763 (961)
166 PF10146 zf-C4H2: Zinc finger- 49.0 2.2E+02 0.0047 29.2 11.1 85 457-542 11-95 (230)
167 PF04977 DivIC: Septum formati 48.8 79 0.0017 25.5 6.6 43 292-334 21-63 (80)
168 KOG0978|consensus 48.5 5.5E+02 0.012 30.7 35.0 35 459-493 554-588 (698)
169 PF05701 WEMBL: Weak chloropla 48.4 4.5E+02 0.0097 29.6 35.5 184 299-493 215-401 (522)
170 KOG4673|consensus 47.5 5.9E+02 0.013 30.8 32.5 53 426-478 577-633 (961)
171 PF15290 Syntaphilin: Golgi-lo 47.5 3.5E+02 0.0077 29.2 12.5 95 391-521 72-171 (305)
172 PF09304 Cortex-I_coil: Cortex 47.4 2.4E+02 0.0052 26.3 10.3 57 364-420 14-70 (107)
173 PRK09039 hypothetical protein; 46.6 3.9E+02 0.0086 28.5 19.0 137 391-530 57-204 (343)
174 PF06005 DUF904: Protein of un 45.9 1.9E+02 0.0042 24.7 10.5 55 448-502 2-56 (72)
175 cd07651 F-BAR_PombeCdc15_like 45.8 3.1E+02 0.0068 27.1 18.6 143 364-512 58-202 (236)
176 COG0216 PrfA Protein chain rel 45.8 2.5E+02 0.0054 31.0 11.4 85 391-476 4-102 (363)
177 PRK05560 DNA gyrase subunit A; 45.6 6E+02 0.013 30.4 16.4 65 403-467 409-475 (805)
178 PF15035 Rootletin: Ciliary ro 45.2 3.2E+02 0.0069 27.0 15.7 44 369-412 84-127 (182)
179 PF14988 DUF4515: Domain of un 44.6 3.4E+02 0.0074 27.2 27.2 178 335-527 16-198 (206)
180 PF14662 CCDC155: Coiled-coil 44.3 3.6E+02 0.0078 27.4 24.9 66 384-449 92-157 (193)
181 PF02183 HALZ: Homeobox associ 43.6 72 0.0016 25.1 5.3 19 467-485 1-19 (45)
182 TIGR00634 recN DNA repair prot 43.4 5.2E+02 0.011 29.1 25.6 33 279-311 159-191 (563)
183 KOG4593|consensus 42.9 6.7E+02 0.014 30.1 34.9 231 316-562 105-361 (716)
184 TIGR02209 ftsL_broad cell divi 42.8 1.4E+02 0.0031 24.7 7.4 45 289-334 25-69 (85)
185 COG1345 FliD Flagellar capping 41.6 1.1E+02 0.0025 34.3 8.5 63 453-532 418-480 (483)
186 PF03962 Mnd1: Mnd1 family; I 41.6 3.6E+02 0.0077 26.6 14.0 99 276-375 64-165 (188)
187 PRK13182 racA polar chromosome 41.4 1.7E+02 0.0036 28.8 8.6 24 454-477 122-145 (175)
188 PF07464 ApoLp-III: Apolipopho 41.1 2.9E+02 0.0062 26.9 10.0 52 352-403 85-137 (155)
189 PF14988 DUF4515: Domain of un 40.9 3.9E+02 0.0085 26.8 20.7 109 423-531 34-174 (206)
190 KOG0971|consensus 40.3 8.4E+02 0.018 30.5 35.3 275 234-513 203-553 (1243)
191 TIGR01843 type_I_hlyD type I s 39.4 4.5E+02 0.0098 27.2 20.3 40 413-452 149-188 (423)
192 KOG3650|consensus 39.2 76 0.0016 29.5 5.5 38 363-400 67-104 (120)
193 TIGR03513 GldL_gliding gliding 39.2 4.4E+02 0.0095 27.0 14.6 95 424-518 101-198 (202)
194 KOG2077|consensus 38.0 2.5E+02 0.0055 33.1 10.4 72 276-347 303-374 (832)
195 TIGR03007 pepcterm_ChnLen poly 37.7 5.7E+02 0.012 27.8 25.8 29 420-448 256-284 (498)
196 PRK10884 SH3 domain-containing 37.4 4.5E+02 0.0097 26.5 12.2 78 408-488 93-170 (206)
197 COG2900 SlyX Uncharacterized p 36.7 2.3E+02 0.005 24.8 7.7 56 391-446 5-60 (72)
198 PF15070 GOLGA2L5: Putative go 36.4 7.6E+02 0.016 28.9 33.9 14 325-338 93-106 (617)
199 KOG0018|consensus 36.4 9.9E+02 0.021 30.2 26.2 54 284-340 686-739 (1141)
200 PF07106 TBPIP: Tat binding pr 36.1 2.3E+02 0.005 26.7 8.5 88 417-509 74-162 (169)
201 TIGR01061 parC_Gpos DNA topois 35.9 8.2E+02 0.018 29.1 16.1 68 400-467 403-472 (738)
202 cd07429 Cby_like Chibby, a nuc 35.4 90 0.0019 28.9 5.4 36 456-495 71-106 (108)
203 KOG3859|consensus 35.0 5.4E+02 0.012 28.3 11.7 51 420-480 350-400 (406)
204 TIGR01005 eps_transp_fam exopo 34.8 7.7E+02 0.017 28.5 27.0 92 432-526 309-403 (754)
205 TIGR01063 gyrA DNA gyrase, A s 34.4 8.8E+02 0.019 29.1 16.4 65 403-467 406-472 (800)
206 PF00769 ERM: Ezrin/radixin/mo 34.0 5.3E+02 0.011 26.4 15.2 108 425-532 8-115 (246)
207 PF09744 Jnk-SapK_ap_N: JNK_SA 34.0 4.5E+02 0.0098 25.6 14.5 88 314-402 24-118 (158)
208 KOG4196|consensus 33.8 4.5E+02 0.0098 25.5 10.5 58 310-371 61-118 (135)
209 cd07657 F-BAR_Fes_Fer The F-BA 33.6 5.3E+02 0.011 26.2 17.5 79 259-343 67-150 (237)
210 PF05615 THOC7: Tho complex su 33.5 3.8E+02 0.0082 24.5 10.4 52 437-488 54-105 (139)
211 TIGR02680 conserved hypothetic 33.4 1.1E+03 0.024 29.9 32.6 45 273-317 741-785 (1353)
212 smart00435 TOPEUc DNA Topoisom 33.1 3.2E+02 0.0068 30.4 10.0 54 425-478 245-298 (391)
213 PRK05431 seryl-tRNA synthetase 33.0 5.1E+02 0.011 28.4 11.6 100 432-533 5-107 (425)
214 PF14645 Chibby: Chibby family 32.9 1.2E+02 0.0026 28.0 5.9 38 454-495 68-105 (116)
215 PF06810 Phage_GP20: Phage min 32.5 2.5E+02 0.0054 26.9 8.1 39 443-481 34-75 (155)
216 PF04803 Cor1: Cor1/Xlr/Xmr co 31.8 4.5E+02 0.0097 24.9 15.3 72 389-467 41-113 (130)
217 KOG0957|consensus 31.7 3.3E+02 0.0072 31.7 10.0 95 440-541 428-522 (707)
218 PRK02119 hypothetical protein; 31.3 3E+02 0.0066 23.5 7.6 50 457-520 2-51 (73)
219 PF12999 PRKCSH-like: Glucosid 31.3 1.8E+02 0.0039 29.0 7.1 47 330-376 117-163 (176)
220 KOG2398|consensus 31.2 9.2E+02 0.02 28.3 17.6 119 363-486 44-168 (611)
221 KOG0243|consensus 31.1 1.2E+03 0.025 29.4 31.2 28 107-134 221-252 (1041)
222 PF09789 DUF2353: Uncharacteri 31.1 7.2E+02 0.016 27.0 18.9 154 259-418 71-227 (319)
223 PF09304 Cortex-I_coil: Cortex 30.8 4.5E+02 0.0098 24.6 13.4 57 284-340 12-68 (107)
224 COG4026 Uncharacterized protei 30.8 6.7E+02 0.015 26.6 14.8 122 356-484 70-204 (290)
225 PF04977 DivIC: Septum formati 30.4 2E+02 0.0043 23.2 6.2 33 282-314 18-50 (80)
226 PF03938 OmpH: Outer membrane 30.2 4.3E+02 0.0093 24.1 11.1 14 391-404 113-126 (158)
227 KOG4403|consensus 30.0 7.6E+02 0.016 28.4 12.2 81 248-333 209-290 (575)
228 PF04871 Uso1_p115_C: Uso1 / p 29.7 4.8E+02 0.01 24.6 15.2 69 466-534 43-112 (136)
229 smart00787 Spc7 Spc7 kinetocho 29.1 7.3E+02 0.016 26.5 26.2 38 394-431 126-167 (312)
230 PF05769 DUF837: Protein of un 28.9 5.8E+02 0.013 25.2 19.3 29 407-435 152-180 (181)
231 cd07605 I-BAR_IMD Inverse (I)- 28.8 6.4E+02 0.014 25.7 18.4 81 450-535 112-197 (223)
232 KOG2129|consensus 28.7 9.4E+02 0.02 27.6 18.7 68 458-525 247-322 (552)
233 PF09730 BicD: Microtubule-ass 28.4 1.1E+03 0.024 28.3 26.2 233 296-565 266-500 (717)
234 PRK13979 DNA topoisomerase IV 28.2 1.2E+03 0.026 28.8 16.0 132 328-467 358-491 (957)
235 PRK08032 fliD flagellar cappin 27.8 4.6E+02 0.0099 29.0 10.3 78 425-529 384-461 (462)
236 PF10186 Atg14: UV radiation r 27.8 6E+02 0.013 25.1 18.7 24 509-532 133-156 (302)
237 KOG1003|consensus 27.7 6.9E+02 0.015 25.7 19.5 73 268-340 19-95 (205)
238 cd07674 F-BAR_FCHO1 The F-BAR 27.5 6.7E+02 0.014 25.5 19.2 75 396-478 166-245 (261)
239 PRK10869 recombination and rep 27.5 9.6E+02 0.021 27.3 25.3 44 434-477 294-337 (553)
240 PF14056 DUF4250: Domain of un 27.0 55 0.0012 27.0 2.4 37 503-540 15-51 (55)
241 KOG0995|consensus 27.0 1.1E+03 0.024 27.8 35.3 97 409-508 447-551 (581)
242 PRK10803 tol-pal system protei 26.9 4.4E+02 0.0094 27.1 9.3 62 471-532 40-101 (263)
243 PF07544 Med9: RNA polymerase 26.6 2.8E+02 0.006 23.9 6.7 70 450-519 7-79 (83)
244 PF11365 DUF3166: Protein of u 26.6 2.2E+02 0.0048 25.9 6.3 68 407-474 9-93 (96)
245 cd00179 SynN Syntaxin N-termin 26.6 4.8E+02 0.01 23.5 13.5 22 391-412 92-113 (151)
246 PF06810 Phage_GP20: Phage min 26.3 5.9E+02 0.013 24.5 9.5 55 433-487 10-67 (155)
247 PF11559 ADIP: Afadin- and alp 26.3 5.2E+02 0.011 23.9 15.8 130 233-376 14-143 (151)
248 PF04642 DUF601: Protein of un 26.3 5.3E+02 0.012 27.7 9.8 100 430-533 194-298 (311)
249 PF03962 Mnd1: Mnd1 family; I 25.3 6.7E+02 0.014 24.7 10.3 20 425-444 72-91 (188)
250 PF12709 Kinetocho_Slk19: Cent 25.2 4.6E+02 0.01 23.7 7.9 48 272-319 32-80 (87)
251 KOG1962|consensus 25.2 7.7E+02 0.017 25.5 16.1 72 432-507 130-201 (216)
252 COG5185 HEC1 Protein involved 25.1 1.1E+03 0.025 27.4 16.8 58 458-515 331-398 (622)
253 KOG4603|consensus 24.9 2.3E+02 0.0051 28.7 6.7 85 446-530 23-117 (201)
254 PF06156 DUF972: Protein of un 24.5 4.8E+02 0.01 23.9 8.1 46 468-513 12-57 (107)
255 TIGR03007 pepcterm_ChnLen poly 24.3 9.4E+02 0.02 26.1 16.5 107 362-468 171-293 (498)
256 KOG3977|consensus 24.1 1.5E+02 0.0033 30.3 5.3 57 320-398 85-141 (221)
257 KOG1962|consensus 24.0 8.2E+02 0.018 25.3 11.9 62 335-397 149-210 (216)
258 PF08580 KAR9: Yeast cortical 23.9 1.3E+03 0.027 27.5 14.1 39 485-523 115-154 (683)
259 PF07058 Myosin_HC-like: Myosi 23.8 6.7E+02 0.014 27.6 10.1 83 277-361 3-88 (351)
260 PF06156 DUF972: Protein of un 23.7 5.7E+02 0.012 23.4 8.8 33 284-316 11-43 (107)
261 PRK14160 heat shock protein Gr 23.7 8E+02 0.017 25.1 11.3 101 409-533 55-156 (211)
262 PRK14161 heat shock protein Gr 23.2 3.9E+02 0.0085 26.4 7.8 44 262-305 13-57 (178)
263 PRK14141 heat shock protein Gr 23.1 5.5E+02 0.012 26.1 9.0 57 236-304 11-68 (209)
264 COG4372 Uncharacterized protei 22.9 1.2E+03 0.025 26.7 23.5 164 273-436 122-287 (499)
265 KOG4571|consensus 22.8 7.1E+02 0.015 26.9 10.0 47 456-523 247-293 (294)
266 PF13514 AAA_27: AAA domain 22.6 1.5E+03 0.032 27.8 34.0 49 392-440 785-833 (1111)
267 PF13747 DUF4164: Domain of un 22.5 5.4E+02 0.012 22.7 10.7 49 482-530 36-84 (89)
268 PF11157 DUF2937: Protein of u 22.4 6E+02 0.013 24.7 8.9 76 394-476 19-97 (167)
269 PF10211 Ax_dynein_light: Axon 22.1 7.7E+02 0.017 24.3 12.4 96 331-426 56-159 (189)
270 PRK00888 ftsB cell division pr 22.1 3.6E+02 0.0077 24.4 6.8 46 282-334 28-73 (105)
271 PF13166 AAA_13: AAA domain 22.0 1.2E+03 0.026 26.5 24.2 101 432-532 366-471 (712)
272 PLN02678 seryl-tRNA synthetase 22.0 8.2E+02 0.018 27.5 10.9 77 457-533 33-112 (448)
273 PF06632 XRCC4: DNA double-str 21.9 1E+03 0.023 25.8 12.9 68 459-526 139-214 (342)
274 PF11221 Med21: Subunit 21 of 21.9 4.8E+02 0.01 24.4 7.9 52 256-310 82-133 (144)
275 PF02050 FliJ: Flagellar FliJ 21.9 4.6E+02 0.01 21.7 15.0 85 416-502 13-97 (123)
276 KOG0244|consensus 21.9 1.6E+03 0.034 27.9 18.8 170 317-493 458-654 (913)
277 PF03999 MAP65_ASE1: Microtubu 21.8 1.4E+02 0.003 34.1 5.1 206 293-507 82-365 (619)
278 cd07658 F-BAR_NOSTRIN The F-BA 21.6 8.4E+02 0.018 24.6 19.7 33 457-489 171-203 (239)
279 KOG3478|consensus 21.6 7.1E+02 0.015 23.7 10.6 33 353-385 73-109 (120)
280 PF03670 UPF0184: Uncharacteri 21.5 2.2E+02 0.0049 25.4 5.2 38 261-298 30-71 (83)
281 PF04849 HAP1_N: HAP1 N-termin 21.4 1.1E+03 0.023 25.7 27.5 135 391-526 164-303 (306)
282 KOG1850|consensus 21.4 1.1E+03 0.025 26.1 31.8 62 426-487 233-301 (391)
283 PRK10869 recombination and rep 21.3 1.2E+03 0.027 26.4 26.2 37 279-315 155-191 (553)
284 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.9 6.6E+02 0.014 23.1 18.9 42 491-532 90-131 (132)
285 TIGR00414 serS seryl-tRNA synt 20.9 1.1E+03 0.024 25.8 12.4 101 432-532 5-109 (418)
286 TIGR00293 prefoldin, archaeal 20.8 6E+02 0.013 22.6 8.4 41 490-530 84-124 (126)
287 PRK05729 valS valyl-tRNA synth 20.6 2.8E+02 0.006 33.0 7.4 28 455-482 809-836 (874)
288 cd07673 F-BAR_FCHO2 The F-BAR 20.5 9.5E+02 0.021 24.8 19.8 65 396-463 173-242 (269)
289 PF14712 Snapin_Pallidin: Snap 20.4 5.3E+02 0.012 21.8 10.6 66 410-476 16-90 (92)
290 KOG2391|consensus 20.4 5.6E+02 0.012 28.4 8.9 58 460-517 221-278 (365)
291 TIGR02338 gimC_beta prefoldin, 20.3 6.2E+02 0.013 22.5 11.6 42 449-490 66-107 (110)
292 PF07789 DUF1627: Protein of u 20.0 1.6E+02 0.0035 28.9 4.4 26 498-523 122-147 (155)
No 1
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=100.00 E-value=2.5e-75 Score=586.29 Aligned_cols=268 Identities=43% Similarity=0.685 Sum_probs=262.7
Q ss_pred CCCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825 255 EHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE 334 (565)
Q Consensus 255 e~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE 334 (565)
..++.+.||++|++++||++||++|++||++++.+++++++++..++++++++++++|++++||+|+|++|+|||+||||
T Consensus 3 ~~K~~~~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRE 82 (309)
T PF09728_consen 3 VKKAARQLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRE 82 (309)
T ss_pred hhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH--
Q psy825 335 LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD-- 412 (565)
Q Consensus 335 LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K-- 412 (565)
||++|+.|++|+++++++++.+|.++++||+++|+||+.+|+++++++.+++.+|..|++||++||+||++||+||++
T Consensus 83 LQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~ 162 (309)
T PF09728_consen 83 LQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLL 162 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ------------------------------HHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy825 413 ------------------------------YKA-------KYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF 455 (565)
Q Consensus 413 ------------------------------lq~-------Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TF 455 (565)
++. +|..|.++|++||.||++|++||++|||||+|||++|+||
T Consensus 163 k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tf 242 (309)
T PF09728_consen 163 KQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETF 242 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER 522 (565)
|+||++|+|+|++||||+..|++|||++|++||+|++||+.+.++++.+.+|+++|++|||+||+||
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG1850|consensus
Probab=100.00 E-value=4.5e-64 Score=505.89 Aligned_cols=278 Identities=36% Similarity=0.527 Sum_probs=268.0
Q ss_pred CCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q psy825 256 HPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCREL 335 (565)
Q Consensus 256 ~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCREL 335 (565)
.+...++|++|+.+++|++||..|+++|.++.....++....+.++++..+.++++.++| +|+|++++|+|||+|||||
T Consensus 7 ~k~~ll~m~~l~~~~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRel 85 (391)
T KOG1850|consen 7 EKALLLSMEGLPDAEKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCREL 85 (391)
T ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH---
Q psy825 336 QKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD--- 412 (565)
Q Consensus 336 QKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K--- 412 (565)
||+|+.+++|++..++.++++|++.+++||.+|+||+.+|.+++.+|.+|+++|.+|+++|+.|++||+.|++||++
T Consensus 86 Qr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e 165 (391)
T KOG1850|consen 86 QRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQ 165 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy825 413 ----------------------------------------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIF 452 (565)
Q Consensus 413 ----------------------------------------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF 452 (565)
.+..+..+...|..|+.||++|++||++||.||+|||++|
T Consensus 166 ~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F 245 (391)
T KOG1850|consen 166 KKELWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELF 245 (391)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2233566788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
++||+||++|+|+|++||||...|++|||++|.+||.||++++.+.++++.++++|++|++||||||.+|++|...+...
T Consensus 246 ~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~ 325 (391)
T KOG1850|consen 246 TKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDL 325 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy825 533 GG 534 (565)
Q Consensus 533 ~g 534 (565)
.+
T Consensus 326 e~ 327 (391)
T KOG1850|consen 326 EA 327 (391)
T ss_pred hc
Confidence 64
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.29 E-value=0.012 Score=66.70 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEML 526 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~ 526 (565)
..+..++..+...+..++.+...+...+......+-.+-.+......++..+..++..+..-+..++.+...++
T Consensus 869 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~ 942 (1179)
T TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445544444444444444444444444455555555555544555544444433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.27 E-value=0.014 Score=66.28 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 275 KFKIISQKYSELYHDFNILSLLSKQNEK 302 (565)
Q Consensus 275 Kle~L~KKYsELl~E~Rrlqkq~k~~qK 302 (565)
.++.|.....++......+...+...+.
T Consensus 678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~ 705 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRK 705 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.26 E-value=0.017 Score=65.88 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK 471 (565)
Q Consensus 392 L~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEK 471 (565)
|...+..+-.++..-+..+..++..+..+...-..|..++......+..+...+..-..-...+..+++.+...+..++.
T Consensus 803 l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 882 (1164)
T TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333333333332233444444444444444433333333344444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 472 ETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 472 En~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
+...+..........+-.+-.+...+..++..+..++..|......++.+..
T Consensus 883 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 934 (1164)
T TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444444444444444444444444444444333
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.96 E-value=0.08 Score=62.97 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
..++.++..+.++...+...|..-..-....+.+++.....+..|+......+...+..+..|-.+.........++..+
T Consensus 831 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444445555555555555555666666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy825 505 CRQLAALLKLCRTLQTERAEMLAKLNGAGG 534 (565)
Q Consensus 505 ~kKieKLE~LCRALQ~ER~~L~~kLk~~~g 534 (565)
...+..|+.-|+.+..+...+...+.+...
T Consensus 911 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 940 (1163)
T COG1196 911 RERLEELEAKLERLEVELPELEEELEEEYE 940 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 777777777777777777777777766554
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.11 Score=62.51 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 488 LEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 488 leMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
-.+..++..+..++..+..+...|.+=++.|+.+-..|...|.+
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44556666777777777777777888888888888888888865
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=97.82 E-value=0.11 Score=59.17 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 407 EQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS--------------NEIFAGFKSEMESMSSKINKLEKE 472 (565)
Q Consensus 407 Eehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KS--------------NEvF~TFKkEMEKMSKKiKKLEKE 472 (565)
+..+..++..+..+......++..+..|..-.....+.|... .+++..++..++++...+..|+.+
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 490 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777777788888888888888887777777655322 267778888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy825 473 TATWKQRWEKSHEA 486 (565)
Q Consensus 473 n~~wKrK~E~sNka 486 (565)
...|+.+.+.....
T Consensus 491 l~~~~~~~e~l~~~ 504 (880)
T PRK02224 491 VEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877654443
No 9
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.77 E-value=0.053 Score=59.90 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy825 272 PDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFR 351 (565)
Q Consensus 272 pEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~ 351 (565)
.+..|..|.....+.+..+..+. +.......+.+....|++-.-+.+-+.++...+.....+......+.+.+.....
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666663 3344556677888888888888888888888888887777777777777666555
Q ss_pred HHHHHHHh---------HHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 352 EEEEKRKN---------VSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422 (565)
Q Consensus 352 EEEeKRkE---------LseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~e 422 (565)
+-+.-... ....|+.-|..|...+......-......-..+...+..+.++.+.-+....++...+..+..
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332 134566667777776664433322223334467888888888888877778889999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy825 423 TENGLRKQISMYGEKYDEFQQTLSRSN 449 (565)
Q Consensus 423 tE~eLR~QLniY~EKFeEFQDTL~KSN 449 (565)
.|...+.+|..|..++..++..|.+||
T Consensus 412 ~E~eAr~kL~~~~~~L~~ikr~l~k~~ 438 (569)
T PRK04778 412 DELEAREKLERYRNKLHEIKRYLEKSN 438 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999998884
No 10
>KOG0161|consensus
Probab=97.54 E-value=0.15 Score=63.82 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 460 ESMSSKINKLEKETATWKQRWEKSHEA-YLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 460 EKMSKKiKKLEKEn~~wKrK~E~sNka-LleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
..+.+++.++-.+...|++||+..-.. +-++-+++......+..+...++-+...|-.|..-|+.|.+.+...
T Consensus 1346 ~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1346 NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345667777788999999999988887 4556667777788888888888888888888888887777666544
No 11
>KOG0161|consensus
Probab=97.53 E-value=0.32 Score=61.12 Aligned_cols=264 Identities=18% Similarity=0.236 Sum_probs=145.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhHHHHHHHHHHHHH
Q psy825 262 MLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQEL-TREKLENLCRELQKQNK 340 (565)
Q Consensus 262 LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIl-aKsKLEsLCRELQKqNK 340 (565)
+-+..+.+...++|+..|.+....|...+..+...+..-++.-..+.+.+..+.+++ ++.. .-.=|...-.+|+.+.+
T Consensus 994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHH
Confidence 444446788889999999999999998888888888777776666777777777777 2222 12224455556666666
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHH-------HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHH-------
Q psy825 341 AIREENLQKFREEEEKRKNVSVK-------LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEK------- 406 (565)
Q Consensus 341 ~LKEEnk~r~~EEEeKRkELseK-------FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElR------- 406 (565)
....|.-+....-+..- .+... .+..|.+|...++.....+.++.....+|..-+..|-++-+.-
T Consensus 1073 kke~El~~l~~k~e~e~-~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q 1151 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQ-AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQ 1151 (1930)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555543333222221 22233 3444445555555555445555555545554444444333221
Q ss_pred -------HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHH-----------------HHHhhhHHH
Q psy825 407 -------EQELLDYKAK-----------YLEMQKTENGLRKQISMYGEKYDEFQ-----------------QTLSRSNEI 451 (565)
Q Consensus 407 -------Eehf~Klq~Q-----------v~~L~etE~eLR~QLniY~EKFeEFQ-----------------DTL~KSNEv 451 (565)
+..|.+++.. +..|. ......|....+.+++.+ ++|.-..+.
T Consensus 1152 ~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr---~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~ 1228 (1930)
T KOG0161|consen 1152 LELNKKREAEVQKLRRDLEEETLDHEAQIEELR---KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQ 1228 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111 11111 011111111111111111 111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 452 FAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 452 F~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
-..=+.+. .++.+.+|.....+..+.+..+..+-+++..+.....++..+.++++..+.+|-++..-...+...|..
T Consensus 1229 ~~~~k~~~---e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~ 1305 (1930)
T KOG0161|consen 1229 LSSEKKDL---EKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEE 1305 (1930)
T ss_pred HhhhhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 334467777888888888888888888888888888888888888888888888877777777776666
Q ss_pred cC
Q psy825 532 AG 533 (565)
Q Consensus 532 ~~ 533 (565)
..
T Consensus 1306 ~k 1307 (1930)
T KOG0161|consen 1306 LK 1307 (1930)
T ss_pred HH
Confidence 54
No 12
>KOG4674|consensus
Probab=97.49 E-value=0.19 Score=62.48 Aligned_cols=243 Identities=20% Similarity=0.287 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH------HHHHHHHHHHHHhHH
Q psy825 278 IISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQ------KQNKAIREENLQKFR 351 (565)
Q Consensus 278 ~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQ------KqNK~LKEEnk~r~~ 351 (565)
.+--+|.=+..|.++|..++.-+++..+.|+......+..-.+++..-+....+-+..+ --|+.|.+++.+...
T Consensus 1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~ 1243 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLE 1243 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34446666777888999999888888888888887777777777776666666655444 456778877765444
Q ss_pred HHHHHHHhH------HHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy825 352 EEEEKRKNV------SVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQ-ELLDYKAKYLEMQKTE 424 (565)
Q Consensus 352 EEEeKRkEL------seKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREe-hf~Klq~Qv~~L~etE 424 (565)
.-.+-|..+ ..-||..|.....+|.........|+.+|..-..++-+|.++|.-++- .|.++..-|..|..-=
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 434434333 356999999999999999998899999999999999999999998875 4566777777776655
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT--------- 495 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~--------- 495 (565)
.....++..-...|..|+ .+--.-.+.|..+....++.+..|+.=+..+...|...++.++++-.-..
T Consensus 1324 ~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t 1400 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDT 1400 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888999999999 44445677888999999999999999999888888888888544322211
Q ss_pred ---------H--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 496 ---------K--AESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 496 ---------k--~~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
. +..++..+..+++.+..+-+++|.+=-
T Consensus 1401 ~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e 1439 (1822)
T KOG4674|consen 1401 SRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETE 1439 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 1 124555555566555556666555533
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.47 E-value=0.3 Score=54.72 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 277 KIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 277 e~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
..|..+..+...+...|.+....++....+++.+.+.++.++...----.+|..-|.++...+..+..|.-....+..+.
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666666666666677777777766655566777778888888877777776655554444
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy825 357 RKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 357 RkELseKFQ~tL~DIq~qM 375 (565)
+..+. .+...|..+..++
T Consensus 219 ~~ri~-~LEedi~~l~qk~ 236 (546)
T PF07888_consen 219 RQRIR-ELEEDIKTLTQKE 236 (546)
T ss_pred HHHHH-HHHHHHHHHHHHH
Confidence 43332 3455555554444
No 14
>KOG4674|consensus
Probab=97.46 E-value=0.51 Score=58.96 Aligned_cols=252 Identities=18% Similarity=0.188 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH-------HHHHHHHHHHHHHHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLE-------NLCRELQKQNKAIREE 345 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLE-------sLCRELQKqNK~LKEE 345 (565)
++....+-+||..|...|-.+..+...++.-+..+..+.+.+..++...-..-+.+. .--+|+|.+-+.+.+.
T Consensus 51 eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~ 130 (1822)
T KOG4674|consen 51 EQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMEL 130 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555554444444444444444444443333333333 3334555555555554
Q ss_pred HHHhHHHHHHHHHhHH------HHHHHHHHHHHHHHhhhcccc--------------chhhhccHHHHHHHHHHHHHHHH
Q psy825 346 NLQKFREEEEKRKNVS------VKLENTLSEISNQVQESNNKT--------------MKLRGDNLDMAKKFRELLIQYDE 405 (565)
Q Consensus 346 nk~r~~EEEeKRkELs------eKFQ~tL~DIq~qMEE~~~~n--------------~KL~~EN~eL~eKLKsLIEQYEl 405 (565)
..+...+-+..+.++. .....++.+++..+++..... .-|..+|.-|...|..+.++|..
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~ 210 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS 210 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4443334333333322 123445666666665554331 22344555577888888888875
Q ss_pred HHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHH
Q psy825 406 KEQE----LLDYKA-------KYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKS----EMESMSSKINKLE 470 (565)
Q Consensus 406 REeh----f~Klq~-------Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKk----EMEKMSKKiKKLE 470 (565)
-... +..+.. .+..+...=..|+.+..-|..+++....+|.+-++...++.. ||.---+=.--+.
T Consensus 211 ~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~k 290 (1822)
T KOG4674|consen 211 LRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWK 290 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 333444 444555556667777777777777778888888877776544 4443333333333
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 471 KETATWKQRWEKSHEAY------LEMSNEKTK-----AESELITTCRQLAALLKLCRTLQTERAE 524 (565)
Q Consensus 471 KEn~~wKrK~E~sNkaL------leMaEER~k-----~~kEle~l~kKieKLE~LCRALQ~ER~~ 524 (565)
.-...|..++...-.+| ++=+.++.. +...-..+....+.|++.|+.|+.+=..
T Consensus 291 s~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~ 355 (1822)
T KOG4674|consen 291 SKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELED 355 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555554333333 233333321 1122234666778888999999976443
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.42 E-value=0.17 Score=50.78 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=62.9
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEM----SNEKTKAESELITTCRQ 507 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleM----aEER~k~~kEle~l~kK 507 (565)
..|..+|.+++.....++..-...+.|+..+...+..|..+...++.+....-..|-++ ..++..+...+..+...
T Consensus 191 ~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~e 270 (312)
T PF00038_consen 191 EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEE 270 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchh
Confidence 56788888888888888888888888888888888888888888888777766666543 34444444445555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 508 LAALLKLCRTLQTERAE 524 (565)
Q Consensus 508 ieKLE~LCRALQ~ER~~ 524 (565)
+..|..=|.....+...
T Consensus 271 l~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 271 LAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444333
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.26 E-value=0.77 Score=54.94 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN 492 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE 492 (565)
+..++..+...-..+..++..+...-..++.-+.....-+...+.++..+...+..++.+-..+..........+..+..
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 493 EKTKAESELITTCRQLAALLKLCRT 517 (565)
Q Consensus 493 ER~k~~kEle~l~kKieKLE~LCRA 517 (565)
+.......+..+......|+..+..
T Consensus 906 ~~~~~~~~~~~l~~~~~~~~~~~~~ 930 (1163)
T COG1196 906 EIEKLRERLEELEAKLERLEVELPE 930 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444443
No 17
>KOG1029|consensus
Probab=97.03 E-value=1 Score=52.65 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN 492 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE 492 (565)
++.+..++......|..+|.-...|...+.-- .++-|.+|+.|++.+-..=.|...++.+.-..+..|+.++-
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~-------~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVD-------ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheec-------cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555555555555666666556665544422 35678899999999988888999999999999999999999
Q ss_pred HHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 493 EKTKAESELITTC-------RQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 493 ER~k~~kEle~l~-------kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|++.+..++...+ -+...|+.+.|.=+.=|+.|..+|.+.+
T Consensus 508 Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldels 555 (1118)
T KOG1029|consen 508 EKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELS 555 (1118)
T ss_pred HHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887643 2356677777776777777766666654
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.96 E-value=0.99 Score=50.79 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q psy825 366 NTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQ--------------KTENGLRKQI 431 (565)
Q Consensus 366 ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~--------------etE~eLR~QL 431 (565)
..|.+-..+|...-.....+..++..|.+.|..+-++.+.-++...-+...++.+. -.-..|+.||
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qL 341 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQL 341 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33444334444333334455667777777777777776655544332221111110 0123344444
Q ss_pred HHHHHhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIF----AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQ 507 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF----~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kK 507 (565)
..-.-.+.+...-..+--..+ ...+.+|++++-.+.++++- ++-.+-.+.+.-.++..++.-..-++...++.
T Consensus 342 ad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~---lqEer~E~qkL~~ql~ke~D~n~vqlsE~~re 418 (546)
T PF07888_consen 342 ADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEH---LQEERMERQKLEKQLGKEKDCNRVQLSENRRE 418 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444444443332222222211 12234444444444444331 12222223333333444444333345555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 508 LAALLKLCRTLQTERAE 524 (565)
Q Consensus 508 ieKLE~LCRALQ~ER~~ 524 (565)
+.-|.+-.|-+|.|..+
T Consensus 419 l~Elks~lrv~qkEKEq 435 (546)
T PF07888_consen 419 LQELKSSLRVAQKEKEQ 435 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666555543
No 19
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.94 E-value=1.2 Score=51.42 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGE----KYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL 488 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~E----KFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl 488 (565)
+-.|+..|-.+++.||..|+.-.+ +.+++...|.+|-+.+..---||-+.-+.|+-|+.....+++..++.+..|-
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ie 611 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIE 611 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 556788899999999999996654 4568899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 489 EMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 489 eMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
+|-.+...+.+.+.+-.+|+.-|+.-+-.||.|=..+.++..
T Consensus 612 eLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 612 ELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999998888888888888888777655554433
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.80 E-value=2.1 Score=52.03 Aligned_cols=33 Identities=3% Similarity=-0.132 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 274 EKFKIISQKYSELYHDFNILSLLSKQNEKQIAL 306 (565)
Q Consensus 274 EKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQ 306 (565)
..+..|...+..+..+...+..++..++.+...
T Consensus 836 ~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e 868 (1311)
T TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 21
>KOG0612|consensus
Probab=96.72 E-value=1.9 Score=52.46 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhh
Q psy825 477 KQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLIL 540 (565)
Q Consensus 477 KrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~~ 540 (565)
+.-.+....-+++|-++-.-+.-.+...+.++..|.+.|+.++.++..|...|..-..++..+.
T Consensus 713 k~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 713 KSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4445556666666766666666677777778899999999999999999998887766655544
No 22
>KOG0250|consensus
Probab=96.72 E-value=0.89 Score=54.40 Aligned_cols=163 Identities=19% Similarity=0.283 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHH------HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHH-HHHHHHHHH
Q psy825 333 RELQKQNKAIREENLQKFREEEEKRKNVS------VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKF-RELLIQYDE 405 (565)
Q Consensus 333 RELQKqNK~LKEEnk~r~~EEEeKRkELs------eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKL-KsLIEQYEl 405 (565)
-+.+.+...+++|.-.+..+-+..|..+. ..++.-+.+++..|.+.......++..-.++.+.+ ..+..+-+.
T Consensus 319 teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e 398 (1074)
T KOG0250|consen 319 TEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEE 398 (1074)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 45666777777777777666666666554 34777788888888888777777777777777777 777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 406 KEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHE 485 (565)
Q Consensus 406 REehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNk 485 (565)
++..+..|+.++..|......|+..++....+...-+.-+..--.--.+.++-++.++..++.|.+=...--+.|-..-.
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~ 478 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMP 478 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhH
Confidence 88888888889988888888888888888888888887777666667778888888888888888877777778887777
Q ss_pred HHHHHHHHHH
Q psy825 486 AYLEMSNEKT 495 (565)
Q Consensus 486 aLleMaEER~ 495 (565)
+|+..++-+.
T Consensus 479 ~lL~~I~r~~ 488 (1074)
T KOG0250|consen 479 QLLRAIERRK 488 (1074)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 23
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.55 E-value=2 Score=48.70 Aligned_cols=227 Identities=16% Similarity=0.215 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHh----------
Q psy825 280 SQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQK---------- 349 (565)
Q Consensus 280 ~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r---------- 349 (565)
...+.+-..++..++.++..+......+..+.+.++.++.....-....+..+.+|+.+.+ +++-....
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAK 398 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHH
Confidence 3334455555555666666666666666666666666666555555555555556655555 22222111
Q ss_pred ----HHHHHHHHHhHHHHHHHHHHHHHHHHhh-------hccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 350 ----FREEEEKRKNVSVKLENTLSEISNQVQE-------SNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYL 418 (565)
Q Consensus 350 ----~~EEEeKRkELseKFQ~tL~DIq~qMEE-------~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~ 418 (565)
+....+++.+|..+|+..=.-+-..+.. +.....++..+-..|+.+++.++.-...+++.+..|...+.
T Consensus 399 L~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 399 LQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333221111111111 11111223334445666666666666666666666555554
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy825 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAE 498 (565)
Q Consensus 419 ~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~ 498 (565)
.+.+. ..-+.|+.+.=++-.-+.| -+.||++.-.-++.|-||...+..+.+.+=..+-+|+-.-.+.+
T Consensus 479 ~~~k~-----~~Rs~Yt~RIlEIv~NI~K-------Qk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkD 546 (594)
T PF05667_consen 479 KLPKD-----VNRSAYTRRILEIVKNIRK-------QKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKD 546 (594)
T ss_pred hCCCC-----CCHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC
Confidence 44333 2345677776666555544 46799999999999999999999998888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy825 499 SELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 499 kEle~l~kKieKLE~LCRALQ 519 (565)
....++=+.+-.|-..|-+|-
T Consensus 547 e~~rkaYK~La~lh~~c~~Li 567 (594)
T PF05667_consen 547 EAARKAYKLLASLHENCSQLI 567 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777877776653
No 24
>KOG0250|consensus
Probab=96.38 E-value=3.5 Score=49.62 Aligned_cols=240 Identities=18% Similarity=0.267 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH--HHHHHh
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALL-QNEKEILTLENSKQELTREKLENLCRELQKQNKAIR--EENLQK 349 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQL-qKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LK--EEnk~r 349 (565)
.+-+++-......+..+...+.+.+...+.+.+++ +.+--.-+.++-|+-++=.-+-..-|+|..+...++ +|-+..
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~ 299 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDT 299 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434444444444555555555555544433 111111111122222222222223344444443332 333344
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 350 FREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRK 429 (565)
Q Consensus 350 ~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~ 429 (565)
+.+.-..+..-.+-....|++|++++++-.+.......+-..++.-|..+.-.|..=+..+......+..+...-..|+.
T Consensus 300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445455556777888888888777766555555666666666666655555555555444455555555556666
Q ss_pred HHHHHHHhH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 430 QISMYGEKY-DEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 430 QLniY~EKF-eEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
||+-|-+-+ ..++.-+..- ..+++.+.+.+.+||-....|+.+.+..-..+..+-+++......+..+.+++
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~-------e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEER-------ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 666666555 3333222211 22233333334444444455566666666667777777777777777777777
Q ss_pred HHHHHHHHHHH
Q psy825 509 AALLKLCRTLQ 519 (565)
Q Consensus 509 eKLE~LCRALQ 519 (565)
+.-..-.+.|-
T Consensus 453 ~~~~~~l~~lk 463 (1074)
T KOG0250|consen 453 ENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHH
Confidence 66555544443
No 25
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.38 E-value=1.1 Score=43.92 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH---HHhHHHHH
Q psy825 278 IISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREEN---LQKFREEE 354 (565)
Q Consensus 278 ~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEn---k~r~~EEE 354 (565)
..-+-.+++..+++++..-+...+.....|++.......+-..-..++.+|. .++++.+.++-|+ .+++..-+
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~----~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK----ELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555444444444332222222222455554 3455555555444 34566677
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 355 EKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD 412 (565)
Q Consensus 355 eKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K 412 (565)
..|.+|..+|..+|.+|+... .-.|.-|..||..+.++.|.|+.++..
T Consensus 121 ~ErdeL~~kf~~~i~evqQk~----------~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 121 QERDELYRKFESAIQEVQQKT----------GLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998775 336778999999999999999999987
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=96.37 E-value=2.6 Score=48.02 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 503 TTCRQLAALLKLCRTLQTERAEML 526 (565)
Q Consensus 503 ~l~kKieKLE~LCRALQ~ER~~L~ 526 (565)
.+..++..|+.-.+.|+.+...+.
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 27
>KOG0933|consensus
Probab=96.36 E-value=3.6 Score=49.44 Aligned_cols=251 Identities=17% Similarity=0.202 Sum_probs=146.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH-HHHHHHHHHHH
Q psy825 262 MLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLE-NLCRELQKQNK 340 (565)
Q Consensus 262 LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLE-sLCRELQKqNK 340 (565)
++-.|-.+...+-+|.++++.|.++..++..++...+++..-..++. -..-+ ..++..+|+ +=.+-++..++
T Consensus 672 ~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~----l~~~~---l~l~~~r~~~~e~~~~~~~~~ 744 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLE----LKLHE---LALLEKRLEQNEFHKLLDDLK 744 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHhcChHhhHHHHHH
Confidence 44555556666778899999999998888888777776655333332 12222 223333333 23455666666
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccc-h---hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 341 AIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTM-K---LRGDNLDMAKKFRELLIQYDEKEQELLDYKAK 416 (565)
Q Consensus 341 ~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~-K---L~~EN~eL~eKLKsLIEQYElREehf~Klq~Q 416 (565)
.+.++....-.+-.+.+ .+.-.-+..+..|...|.++...+. + +..+-..+..++.......+.|+..|..++-.
T Consensus 745 ~~~e~v~e~~~~Ike~~-~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE 823 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKEKE-RALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLE 823 (1174)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443222222222 2233457788889888877654422 1 22222223444444444555556555554444
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 417 YLEMQK-------TENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 417 v~~L~e-------tE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
+.+|.. .=.++..++..|..........+.+--.--..--.++.....++..+-++...+-..|+.+-...-.
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 444332 2234555556666666666655555555556666777777788888888888888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 490 MSNEKTKAESELITTCRQLAALLKLCRTLQT 520 (565)
Q Consensus 490 MaEER~k~~kEle~l~kKieKLE~LCRALQ~ 520 (565)
+--+|.++..++..+..-..-...-.+.|-.
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 8888887777777665554444444444433
No 28
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=1.9 Score=46.06 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=52.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTE 521 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~E 521 (565)
.+....-...-.....++..+......++.+...|...-..-+..+-.+..++.....++..+.....+|..++.+|+.+
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444445555555555555666666555555566666677777777778888888888888888888764
Q ss_pred HH
Q psy825 522 RA 523 (565)
Q Consensus 522 R~ 523 (565)
+.
T Consensus 256 ~~ 257 (428)
T PRK11637 256 AK 257 (428)
T ss_pred HH
Confidence 43
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.79 E-value=2.3 Score=42.22 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 417 YLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAY 487 (565)
Q Consensus 417 v~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL 487 (565)
+..|...+...-.....|.+++..+..-|..+-.-+...-..+..+...+..||-+...|+.+|.....-|
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555555566666677777777777777777776665555
No 30
>PRK11637 AmiB activator; Provisional
Probab=95.75 E-value=3.5 Score=44.02 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 409 ELLDYKAKYLEMQKTENGLRKQISMYGE 436 (565)
Q Consensus 409 hf~Klq~Qv~~L~etE~eLR~QLniY~E 436 (565)
.+..|......+......|..++.....
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~ 198 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKT 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444444444444444433333
No 31
>KOG0996|consensus
Probab=95.74 E-value=7.3 Score=47.60 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 415 AKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQR 479 (565)
Q Consensus 415 ~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK 479 (565)
..+..|...+..+..++..-..++..-..++..-+......+.++..|...++..+++...++..
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e 571 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKE 571 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 33344444444443333333333333333333344444455555555555555555555555443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=95.70 E-value=5.2 Score=45.67 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy825 496 KAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGG 534 (565)
Q Consensus 496 k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g 534 (565)
....+.+.+..++..|......+......|...+....|
T Consensus 395 ~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~ 433 (880)
T PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433 (880)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445567777888888888888887777776655443
No 33
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.55 E-value=4 Score=43.30 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 412 DYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSR--SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 412 Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~K--SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
.|..|+..|-..-..|+.+|.--+--+-.+-|++.- .++. -+.++-.+..|-.|...|+...-.+......
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt-------~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDT-------AERLSSHIRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777778888887422223355555421 1222 2334445555555555554443332222211
Q ss_pred -----HHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 490 -----MSNE---KTKAESELITTCRQLAALLKLCRTLQT 520 (565)
Q Consensus 490 -----MaEE---R~k~~kEle~l~kKieKLE~LCRALQ~ 520 (565)
..++ |.....--.++..-+++=+.|||+|-.
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 122222223455566788899998854
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.35 E-value=3.6 Score=41.48 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy825 390 LDMAKKFRELLIQYDEKEQELLD-----YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS 464 (565)
Q Consensus 390 ~eL~eKLKsLIEQYElREehf~K-----lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSK 464 (565)
.+|..-|..|-.||+..=..+.. |+.++..+. .+.......-.....=+....-.+.....+++.+..
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~-------~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR-------QQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc-------ccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 46888888888899744332221 555555443 333334444444444455555566677778888888
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 465 KINKLEKETATWKQRWEK----SHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 465 KiKKLEKEn~~wKrK~E~----sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
+...||.....+...+.. .+..|..+=.+-.....++.......+.|.++=-+|..|=+.|..-|.+-.
T Consensus 238 ~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEgEE 310 (312)
T PF00038_consen 238 KNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEGEE 310 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHC
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcc
Confidence 888888888877766655 344555566666677777777777778888888899999888888777543
No 35
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.19 E-value=0.0053 Score=70.94 Aligned_cols=240 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy825 271 TPDEKFKIISQKYSELYHDF----NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREEN 346 (565)
Q Consensus 271 TpEEKle~L~KKYsELl~E~----Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEn 346 (565)
+.+..+..|.+||.+.+.++ -.+++....+.+--..+..+.+.+.+++.-....|..+|..|+-|--+...+.
T Consensus 117 ~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~--- 193 (859)
T PF01576_consen 117 QHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQ--- 193 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH---
Confidence 34677888888886666553 33444444444444455555555555555555556666665555544444332
Q ss_pred HHhHHHHHHHHHhHH---HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 347 LQKFREEEEKRKNVS---VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKT 423 (565)
Q Consensus 347 k~r~~EEEeKRkELs---eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~et 423 (565)
.++.+.+..+.++. .++++-+.+++.++++.......+......|.. +++.++.++...+..
T Consensus 194 -~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~--------------qLeelk~~leeEtr~ 258 (859)
T PF01576_consen 194 -AKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLES--------------QLEELKRQLEEETRA 258 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHhHhhh
Confidence 12222222222222 223333444444443333322222222111111 112222222222222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHH---
Q psy825 424 ENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN-EKTKAES--- 499 (565)
Q Consensus 424 E~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE-ER~k~~k--- 499 (565)
-..|..+|.-...-.+.+. +.+...-..-..+.+.+.++.-+...|++||+......++-++ -|.++..
T Consensus 259 k~~L~~~l~~le~e~~~L~-------eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~ 331 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLR-------EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQ 331 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHH-------HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2222222222222222222 2222222233345566677788999999999998888665443 4444443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 500 ----ELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 500 ----Ele~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
.++.+..++..|+..|..|+.|-..+...|....+.
T Consensus 332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777788888888888877777777766653
No 36
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.16 E-value=7 Score=43.74 Aligned_cols=192 Identities=18% Similarity=0.241 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy825 272 PDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFR 351 (565)
Q Consensus 272 pEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~ 351 (565)
+++.+..|.....+++..+..+ .+.......+.+..+.|++-.-+.+-+.++.-.+..+..+......+++.+.....
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5666677776666666666555 34455666677888888888888888888888888887777777666666666555
Q ss_pred HHHHHHH---------hHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 352 EEEEKRK---------NVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422 (565)
Q Consensus 352 EEEeKRk---------ELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~e 422 (565)
+-+.-+. +....|+.-|..|..++..-...-..-..--..+.+.|..+.++.+.-+.....+...+..|..
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433221 1123466666666666554443322222334468888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhH---------HHHHHHHHHHHHHHHH
Q psy825 423 TENGLRKQISMYGEKYDEFQQTLSRSN---------EIFAGFKSEMESMSSK 465 (565)
Q Consensus 423 tE~eLR~QLniY~EKFeEFQDTL~KSN---------EvF~TFKkEMEKMSKK 465 (565)
-|..-|.+|..|..++....-.|.+|| +.|.....+|+.+...
T Consensus 408 dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 408 DEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 3455545554444443
No 37
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.09 E-value=7.6 Score=43.80 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSR--SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKA---ESEL 501 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~K--SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~---~kEl 501 (565)
|+.++..-.+..+++...|.. +++.+..+..+++...+++.+++.+...+..+.+.....+..+-.+-... ....
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333344444444444 35666677777777777777777777777666666666655543333222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 502 ITTCRQLAALLKLCRTLQTERAEMLA 527 (565)
Q Consensus 502 e~l~kKieKLE~LCRALQ~ER~~L~~ 527 (565)
..+...+..++.++..|..-+..+..
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~l~~ 501 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREKLLE 501 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666655555544433
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.89 E-value=13 Score=45.29 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 421 QKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAY 487 (565)
Q Consensus 421 ~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL 487 (565)
......|..++......|.++..-++.-..-|..-+.+|+..-+.....-.+.....++....-..+
T Consensus 815 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 815 REEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3367789999999999999999999888888888888888887777776666666666544444444
No 39
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=94.86 E-value=4.5 Score=40.04 Aligned_cols=135 Identities=10% Similarity=0.171 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 338 QNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKY 417 (565)
Q Consensus 338 qNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv 417 (565)
++..++..+.. +-.--..|..+..+-..+|......+..-...-.++ ++..++...+.|++-|+.|=..|..|-.-+
T Consensus 62 d~~~v~~~~~~-a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki--~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y 138 (204)
T PF10368_consen 62 DNDEVKKLSDE-ALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKI--EDEKLKKQAKELNEAMKKRYKSYDKLYKAY 138 (204)
T ss_dssp SHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 333444666766666777777776665544443344 455689999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 418 LEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETAT 475 (565)
Q Consensus 418 ~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~ 475 (565)
......|.+|=..|.-=.-.+++++.-+..=|..+..+.+..+.+++-+++.-++-..
T Consensus 139 ~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~ 196 (204)
T PF10368_consen 139 KKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQD 196 (204)
T ss_dssp HHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998888999999999999999999999999999998877665443
No 40
>KOG4643|consensus
Probab=94.78 E-value=13 Score=44.98 Aligned_cols=265 Identities=18% Similarity=0.260 Sum_probs=147.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH----------------
Q psy825 268 DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENL---------------- 331 (565)
Q Consensus 268 ~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsL---------------- 331 (565)
.|++.+.||-.|..-..|-..-+.++...+.+++...+-++-|......|-..+-.-+++|-.|
T Consensus 178 elAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlm 257 (1195)
T KOG4643|consen 178 ELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLM 257 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhh
Confidence 4566678888887776666666777777777777777777766666665555444433333322
Q ss_pred --------HHHHHHHHHHHHHHHHHhHHHHHHH-HHhH--------HHHHHHHHHHHHHHHhhhccccchhhhccHHHHH
Q psy825 332 --------CRELQKQNKAIREENLQKFREEEEK-RKNV--------SVKLENTLSEISNQVQESNNKTMKLRGDNLDMAK 394 (565)
Q Consensus 332 --------CRELQKqNK~LKEEnk~r~~EEEeK-RkEL--------seKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~e 394 (565)
.-||-..|..|-++ +.++.+.-++ |..- +-+++.-|.++.....-......+|..||..|.-
T Consensus 258 Ds~fykdRveelkedN~vLlee-keMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEE-KEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12344444444433 2333333222 2111 1235555666555433333334566666666654
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHHHH---HHHHH
Q psy825 395 KFRELLIQYDEKEQELL-----------------------------------------DYKAKYLEMQKTEN---GLRKQ 430 (565)
Q Consensus 395 KLKsLIEQYElREehf~-----------------------------------------Klq~Qv~~L~etE~---eLR~Q 430 (565)
-=..|--||++=.-|-. +|..-++.+...++ .|--.
T Consensus 337 q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k 416 (1195)
T KOG4643|consen 337 QKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKK 416 (1195)
T ss_pred HHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHH
Confidence 44555555554322100 01122222222222 24455
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Q psy825 431 ISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK------------------------INKLEKETATWKQRWEKSHEA 486 (565)
Q Consensus 431 LniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKK------------------------iKKLEKEn~~wKrK~E~sNka 486 (565)
+.+..+++.+.-.-+.++-++|-....|.++|-.. ..+++.+...++.++.++|..
T Consensus 417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~ 496 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKS 496 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666655555433 345566666677777777666
Q ss_pred HHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 487 YLE--------------MSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 487 Lle--------------MaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|=. +-+.......+|+.+..+++.|+.+.-.|-.|+..|..+|....
T Consensus 497 L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 497 LNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 522 22223344456777888889999999999999999988876544
No 41
>KOG0933|consensus
Probab=94.75 E-value=5.9 Score=47.71 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=120.4
Q ss_pred HHHHHHHHhhhccccchhhhccH---HHHHHHHHHHHHHHHHHHHHH--H--------------HHHHHHHHHHHHHHHH
Q psy825 368 LSEISNQVQESNNKTMKLRGDNL---DMAKKFRELLIQYDEKEQELL--D--------------YKAKYLEMQKTENGLR 428 (565)
Q Consensus 368 L~DIq~qMEE~~~~n~KL~~EN~---eL~eKLKsLIEQYElREehf~--K--------------lq~Qv~~L~etE~eLR 428 (565)
|++++.+++.+...-..+..+-. ..+.||..|-.||+++--.+. . +..-...+.+.+.++.
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666655433333222 246899999999997743332 1 2222334445566666
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 429 ~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
.-.-.|.+.++.+-..=++=++.|..=..+|..+.|.++.+...+..-.+.|+..-.-.-.+.-|-+.+.+++.....++
T Consensus 759 e~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l 838 (1174)
T KOG0933|consen 759 EKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQL 838 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776666778888988889999999999998888888888888877777667777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy825 509 AALLKLCRTLQTERAEMLAKLNGAGG 534 (565)
Q Consensus 509 eKLE~LCRALQ~ER~~L~~kLk~~~g 534 (565)
+.|+.=|+.|-.+=-.|..++..+.+
T Consensus 839 ~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 839 EQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 88888888888887777777766654
No 42
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.35 E-value=4.8 Score=38.12 Aligned_cols=153 Identities=18% Similarity=0.268 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhhhccccchhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLR-GDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEF 441 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~-~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEF 441 (565)
..+..|..++.++.....-..-|. .+...|.--=..|.++-+.|...+.+++..+..-.+.=+.+|..|......+...
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l 96 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777655443322222 1333344444566677788999999999988888889999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEK-SHEAYL-EMSNEKTKAESELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~-sNkaLl-eMaEER~k~~kEle~l~kKieKLE~LCRALQ 519 (565)
...|..-.+.+..++.++........++.+.+..++..+.. ..+.|+ ++.. ....+..++..+..|+.-|..|+
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~----~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK----TKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776 446666 3332 23344455555555555555443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.15 E-value=18 Score=43.99 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 465 KiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
.+..++.....+......+..++...-.+........+.....+..+..=...++.+..+|...|-...|.
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gS 540 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGS 540 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 33444555555555566666666555555555555444444444444444444555555566666555543
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.89 E-value=11 Score=40.70 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 281 QKYSELYHDFNILSLLSKQNEKQIALLQNEKEIL 314 (565)
Q Consensus 281 KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~l 314 (565)
.+|.++..++..+..++..++.+.+.++.....+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344666666666666665555555444333333
No 45
>KOG0964|consensus
Probab=93.73 E-value=21 Score=43.30 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q psy825 411 LDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK------------------- 471 (565)
Q Consensus 411 ~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEK------------------- 471 (565)
.+++.|+.-=.+.....-.+|+-|.++..+-++-|++----|.....|=....+.+..|+.
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3366666555666777788889999999988888888888888888888888888888887
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy825 472 ETATW-KQRWEKSHEAYLEMSNEKTKAESELITTC----RQLAALLKLCRTLQTERAE 524 (565)
Q Consensus 472 En~~w-KrK~E~sNkaLleMaEER~k~~kEle~l~----kKieKLE~LCRALQ~ER~~ 524 (565)
|-..| ++-++..+.+|.+.-+-......+++.+. ..++.+..|.+.+-..+-.
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r 447 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGR 447 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence 44555 44467777777777666666666666543 3445555565555544443
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.45 E-value=28 Score=43.82 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 469 LEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 469 LEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
|+-....+-...|..+..+-+..+.|..+..+++.+..++.+|.++.-+-++=--.|.. |.+..|.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~-L~eq~g~ 621 (1486)
T PRK04863 556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR-LREQSGE 621 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH-HHHhcch
Confidence 44445556666677777778888888888888999999998888888776665555544 7887775
No 47
>KOG4643|consensus
Probab=93.06 E-value=27 Score=42.53 Aligned_cols=177 Identities=21% Similarity=0.186 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy825 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEE 355 (565)
Q Consensus 276 le~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEe 355 (565)
++.+.-|..++..+++++...+.+++-+..++.+ ....||.|..=|+.++.++.+|.....+.-..
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~q--------------q~~eled~~K~L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQ--------------QLAELEDLEKKLQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556666666677766666666655554444433 35677788888888888887776544332211
Q ss_pred ---HHHhH----H--HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy825 356 ---KRKNV----S--VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEM------ 420 (565)
Q Consensus 356 ---KRkEL----s--eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L------ 420 (565)
.|.++ + .+.-........++..-+..-..-..+-..|.++|..+-+||..-.-||..+..+|..+
T Consensus 462 q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~ 541 (1195)
T KOG4643|consen 462 QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN 541 (1195)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22221 1 11111111222221111111000011222356777777777777777766544443332
Q ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 421 -QKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 421 -~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
...-..|..||..-..- .+=.-.|-++|+=-+.|-.|..+|-.+..
T Consensus 542 lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 542 LEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22233455555444432 23333444555555555555555554443
No 48
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.86 E-value=11 Score=37.31 Aligned_cols=159 Identities=20% Similarity=0.283 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q psy825 359 NVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD-----------YKAKYLEMQKTENGL 427 (565)
Q Consensus 359 ELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K-----------lq~Qv~~L~etE~eL 427 (565)
+|......++.+|..... .....|..|-..||.=|.+-..++.|..+ +..=+..+...-.+|
T Consensus 2 ~L~~~He~af~~iK~YYn-------dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL 74 (201)
T PF13851_consen 2 ELMKNHEKAFQEIKNYYN-------DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEEL 74 (201)
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345556677777777642 33457777777777777777777776655 333345566667789
Q ss_pred HHHHHHHHHhHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 428 RKQISMYGEKYDEFQQ---TLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 428 R~QLniY~EKFeEFQD---TL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
+.+|..|..-+..++. .+.-...-+...+-|-+-+..++.+|+.|...|.++|+.+=.-+-.-+..|.. .+
T Consensus 75 ~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~------lL 148 (201)
T PF13851_consen 75 RKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNL------LL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 9999999887776554 45555677788888888899999999999999999998765555555555431 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 505 CRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 505 ~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
.+ +|..|-.+|..--.+|...|...+
T Consensus 149 Ek---Kl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 149 EK---KLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 344445555555556666666554
No 49
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.70 E-value=12 Score=37.57 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAY---LE 489 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL---le 489 (565)
++.-+..+..-|..|+..+..|.+++..-+ .-|..+|.-.+ .++..--.+....+++|..-..+| |.
T Consensus 102 ~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e-------qry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 102 QKEVIEGYKKNEETLKKCIEEYEERLKKEE-------QRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344455566677777777777777666433 44555544222 122222233344444444433333 22
Q ss_pred HH-HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy825 490 MS-NEKTKAESELITTCRQLAALLKLCRTL 518 (565)
Q Consensus 490 Ma-EER~k~~kEle~l~kKieKLE~LCRAL 518 (565)
.. -...-+...+++..+.++-|-.||--|
T Consensus 172 k~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 172 KEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233355667888888888899999766
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.62 E-value=20 Score=39.92 Aligned_cols=102 Identities=15% Similarity=0.248 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHhHHHHHHHHHHHHHHHHHHHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQEL----TREKLENLCRELQKQNKAIREENLQ 348 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIl----aKsKLEsLCRELQKqNK~LKEEnk~ 348 (565)
-..++....+|+....++.....++..++..++.+.-+++.....-.-++. ...+.+.|-.||.+-+-.|---...
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999888888777665544433 5667888888877766655543332
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 349 KFREEEEKRKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 349 r~~EEEeKRkELseKFQ~tL~DIq~qM 375 (565)
..+.++.|..+....+..+......|
T Consensus 195 -~~eAeee~~~~~~~~~~~~~~~~~~l 220 (522)
T PF05701_consen 195 -HIEAEEERIEIAAEREQDAEEWEKEL 220 (522)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444444444443333
No 51
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.51 E-value=16 Score=38.41 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKS-------EMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAE 498 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKk-------EMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~ 498 (565)
..-.++.++..||.+-.-.+....+-+..++. .+..|...=..|......+--||+.-..+|..--+--....
T Consensus 164 ~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk 243 (309)
T PF09728_consen 164 QKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFK 243 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456677889999999999999999999999 99999999999999999999999998877766555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy825 499 SELITTCRQLAALLKLCRTL 518 (565)
Q Consensus 499 kEle~l~kKieKLE~LCRAL 518 (565)
.+++...+++-+|++=+.++
T Consensus 244 ~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 52
>KOG0980|consensus
Probab=92.31 E-value=31 Score=41.42 Aligned_cols=86 Identities=15% Similarity=0.305 Sum_probs=44.5
Q ss_pred ccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH
Q psy825 379 NNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSE 458 (565)
Q Consensus 379 ~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkE 458 (565)
......|+.+..+|-.|+..+..|-+.-++-+.+..++...+-.+=.++..+.....-|++.-. +++..|+.|
T Consensus 430 kek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~-------~~le~l~~E 502 (980)
T KOG0980|consen 430 KEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQA-------KALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHH
Confidence 3334456666677888888888888877776665433333333333333334333333443322 223345555
Q ss_pred HHHHHHHHHHHHH
Q psy825 459 MESMSSKINKLEK 471 (565)
Q Consensus 459 MEKMSKKiKKLEK 471 (565)
+...--.+.+|.-
T Consensus 503 l~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 503 LALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444433
No 53
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.17 E-value=18 Score=38.44 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy825 332 CRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL 411 (565)
Q Consensus 332 CRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~ 411 (565)
||.|..+|..|+.|.-....+.. .+-++-|..+.|+-.++ ...|.++..=..+|..|...+..|++.--.-+.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~----~~EekEqqLv~dcv~QL---~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETD----TYEEKEQQLVLDCVKQL---SEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHh----hccHHHHHHHHHHHHHh---hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777776665443322 22234566666665554 334444444445667777777766663322111
Q ss_pred ---H--------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy825 412 ---D--------------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFK 456 (565)
Q Consensus 412 ---K--------------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFK 456 (565)
+ ++.++......-..|..+|.-+.+||.+....|.-+-+-..+||
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 55555566667778999999999999999988887776665555
No 54
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.13 E-value=0.042 Score=62.05 Aligned_cols=138 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAK---YLEMQKTENGLRKQISMYGEKYDE 440 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Q---v~~L~etE~eLR~QLniY~EKFeE 440 (565)
+.+.+.+....+.........+..+...+...|..+-.++..++..+..|+.. +......=..|..+|..|..-.
T Consensus 169 l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~-- 246 (722)
T PF05557_consen 169 LKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDA-- 246 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHH--
Confidence 33334444433333333333444555556666666665555556665555332 2222222334555555554321
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 441 FQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQT 520 (565)
Q Consensus 441 FQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ 520 (565)
+| .+.|..--..+..||++|..+.. -+..|-.+..--..+..+...++.+++.+++++..|..
T Consensus 247 ---~i----------~k~l~~ql~~i~~LE~en~~l~~----Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~ 309 (722)
T PF05557_consen 247 ---EI----------NKELKEQLAHIRELEKENRRLRE----ELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAE 309 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HH----------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 23344445578888888877765 23445555555566667778888888888877665443
No 55
>KOG0980|consensus
Probab=91.94 E-value=34 Score=41.09 Aligned_cols=216 Identities=17% Similarity=0.207 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH--HHHHHHHHH
Q psy825 296 LSKQNEKQIALLQNEKEILTLENSKQEL-TREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVK--LENTLSEIS 372 (565)
Q Consensus 296 q~k~~qKk~dQLqKEKD~lqsEl~KaIl-aKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseK--FQ~tL~DIq 372 (565)
++.+.-+.+.++.........|-...|. .+..|..|--+||.+- .+..+++ .+.++-|.++... |+.-+..-+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q-~~~qe~~---~e~eqLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQ-REAQENR---EEQEQLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444444444333332 6666766666665433 3333333 3444556554422 333333322
Q ss_pred HHHhhhccccchhhhccHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy825 373 NQVQESNNKTMKLRGDNLDMAKKFRELLIQYD-EKEQELLD------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTL 445 (565)
Q Consensus 373 ~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYE-lREehf~K------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL 445 (565)
..+++ +...+....+++..+.+-|. +|..|.+= .+.|++.-.+.=..+..+..--.+...+.++..
T Consensus 410 ~~~ee-------~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 410 VLVEE-------AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11122233455555555553 55555442 222222111111122222222233333333322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 446 SRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEM 525 (565)
Q Consensus 446 ~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L 525 (565)
..- -.-.+...+....|+.|...+-.+++....++.-.++....+..+++.+.++.++|-+..+.=-.||..+
T Consensus 483 ~~~-------~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~ 555 (980)
T KOG0980|consen 483 GRA-------ETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREAL 555 (980)
T ss_pred HHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 211 1123445667777888888888899999999888888888888888888888888776665444444433
Q ss_pred HHHH
Q psy825 526 LAKL 529 (565)
Q Consensus 526 ~~kL 529 (565)
...+
T Consensus 556 ~~e~ 559 (980)
T KOG0980|consen 556 RLEA 559 (980)
T ss_pred HHHH
Confidence 3333
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.44 E-value=22 Score=37.76 Aligned_cols=143 Identities=15% Similarity=0.246 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLD------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS 464 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~K------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSK 464 (565)
.|-+++..|-.+|+.+..+... +.+++..+...=..+...+.-|++.-++|..-|.++=.--+-+|++.+.|.-
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788888877755432 5566666665556666667777777777776666666555666666666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCcchhhh
Q psy825 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKL--CRTLQTERAEMLAKLNGAGGYSYLIL 540 (565)
Q Consensus 465 KiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~L--CRALQ~ER~~L~~kLk~~~g~s~~~~ 540 (565)
.+-.+=+....+...|-....-|-++ .+.+..+....-.+... --.++....+++.+++....-|..-+
T Consensus 215 ~~ve~~~~~~e~~ee~~~~~~elre~-------~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~GekLt~Eel 285 (294)
T COG1340 215 EFVELSKKIDELHEEFRNLQNELREL-------EKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKLTTEEL 285 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 44444333333333333332222221 11111111111111000 01566677788999988776665544
No 57
>KOG0964|consensus
Probab=90.90 E-value=46 Score=40.61 Aligned_cols=108 Identities=15% Similarity=0.294 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy825 422 KTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESEL 501 (565)
Q Consensus 422 etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEl 501 (565)
.+-.+|..+++-|...|.++|..|..--.....|-++|+...-.|.++|-....+++.|+..-..+...-.++....+.+
T Consensus 664 rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 664 RSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 502 ITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 502 e~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
....++++.+..=.++|+++++.+.+.|
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el 771 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESEL 771 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999998766655
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.78 E-value=39 Score=39.48 Aligned_cols=126 Identities=21% Similarity=0.298 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYL 418 (565)
Q Consensus 339 NK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~ 418 (565)
.+.|+-|-...-..|++-|..|+..-.+ =..+... -..++.+|.+|..|+-.|..+=+.=-+.+..+..++.
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~-Er~lk~e-------L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNN-ERSLKSE-------LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhcccc-chHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666555555666677665522110 0001111 1345778999999999998765554455566777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRS--------NEIFAGFKSEMESMSSKINKLEKE 472 (565)
Q Consensus 419 ~L~etE~eLR~QLniY~EKFeEFQDTL~KS--------NEvF~TFKkEMEKMSKKiKKLEKE 472 (565)
.....-..|..||..=-..=.+=+.+.+.+ .+.=...|.-+..|-..+++|..|
T Consensus 499 eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~e 560 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRE 560 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666666665443322222333332 233344444444444444444433
No 59
>KOG0977|consensus
Probab=90.43 E-value=37 Score=38.76 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 495 TKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 495 ~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
.++..++..+-..+++|-..--+|+.|=..+..-|.+.++.
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence 34555566666666666666678888888888888887754
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.11 E-value=41 Score=38.75 Aligned_cols=81 Identities=10% Similarity=0.197 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 420 MQKTENGLRKQISMYGEKYDEFQQTLSRSN----EIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT 495 (565)
Q Consensus 420 L~etE~eLR~QLniY~EKFeEFQDTL~KSN----EvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~ 495 (565)
...+-.+|+.||.---+.|-.+. +-| +...+...=-..|.+++-.|+-....|+.+++..+.-++.+...|.
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~lt----ne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLT----NENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455788999988888887543 333 1122222222345566666777777777777777776666666665
Q ss_pred HhHHHHHHH
Q psy825 496 KAESELITT 504 (565)
Q Consensus 496 k~~kEle~l 504 (565)
....++..+
T Consensus 234 q~~~~Lqqy 242 (617)
T PF15070_consen 234 QYLGHLQQY 242 (617)
T ss_pred HHHHHHHHH
Confidence 544444433
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.92 E-value=4.4 Score=39.10 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTC 505 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~ 505 (565)
.|+..|.-=-..=.+++.-|...|.-....+.++......+..|+.+...++.++......|-++..--+....|+..++
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333444566777777777778888888889999999999999999998888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 506 RQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 506 kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
.+...|+.=++.|+.|...|...+-.
T Consensus 158 l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 158 LQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887644
No 62
>PLN02939 transferase, transferring glycosyl groups
Probab=89.78 E-value=43 Score=40.64 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy825 361 SVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLI------QYDEKEQELLDYKAKYL----EMQKTENGLRKQ 430 (565)
Q Consensus 361 seKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIE------QYElREehf~Klq~Qv~----~L~etE~eLR~Q 430 (565)
++.+|..|.....+.+... -..+.|.+|+.|...|-. -|..|-..|+.+|.++. .|+..-.++..|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAA----LVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSY 377 (977)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456666666665544322 234567777766655533 35555555555666654 356678899999
Q ss_pred HHHHHHhHHHHHHHHhh
Q psy825 431 ISMYGEKYDEFQQTLSR 447 (565)
Q Consensus 431 LniY~EKFeEFQDTL~K 447 (565)
+.+|.+--++||++|.+
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 378 IQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 63
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.98 E-value=0.12 Score=60.11 Aligned_cols=257 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 275 KFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLE-------NSKQELTREKLENLCRELQKQNKAIREENL 347 (565)
Q Consensus 275 Kle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsE-------l~KaIlaKsKLEsLCRELQKqNK~LKEEnk 347 (565)
-+..|......|..++-.|.+++......+.++.+.+..+.+. +.--...+..|..--|.|+..+..+++..
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eql- 280 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQL- 280 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence 3344444445555555555555555555555555554444433 22333356666666677776666665432
Q ss_pred HhHHHHHHHHHhHH---HHHHHHHHHHHHHHhhhccc-cchhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q psy825 348 QKFREEEEKRKNVS---VKLENTLSEISNQVQESNNK-TMKLRGDNLDMAKKFRELLIQYDEKEQELLDY-------KAK 416 (565)
Q Consensus 348 ~r~~EEEeKRkELs---eKFQ~tL~DIq~qMEE~~~~-n~KL~~EN~eL~eKLKsLIEQYElREehf~Kl-------q~Q 416 (565)
.++...+.++. .+++.-|.+...+++..... ...+...--.|..+|..+-++++.-...+..| +..
T Consensus 281 ---eeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~E 357 (859)
T PF01576_consen 281 ---EEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGE 357 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455543 34566666666666654433 23343333346667777777777666666542 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 417 YLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTK 496 (565)
Q Consensus 417 v~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k 496 (565)
+..+.-.=-..+.....+..|-..|...|+---..+.....+.+.....+..++-+...+++.++.....+-.+--++..
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33222111123333334444545555555555555566667777777777777778888888777777777666666667
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 497 AESELITTCRQL-------AALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 497 ~~kEle~l~kKi-------eKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
+..++..+..++ ..|+...|.|..+...|...|.+..|.
T Consensus 438 L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 438 LQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp ----------------------------------------------
T ss_pred HHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776665554 458999999999999999998888874
No 64
>KOG0999|consensus
Probab=88.87 E-value=52 Score=38.16 Aligned_cols=105 Identities=32% Similarity=0.450 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 393 AKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKE 472 (565)
Q Consensus 393 ~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKE 472 (565)
+-||++=|..|--||..+-+ -+++|-+.-..|+.|++ +|..|---|.+.|-| |++||-+
T Consensus 151 R~rlr~elKe~KfRE~Rlls---eYSELEEENIsLQKqVs-----------~LR~sQVEyEglkhe-------ikRleEe 209 (772)
T KOG0999|consen 151 RRRLRDELKEYKFREARLLS---EYSELEEENISLQKQVS-----------NLRQSQVEYEGLKHE-------IKRLEEE 209 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcchHHHHHH-----------HHhhhhhhhhHHHHH-------HHHHHHH
Confidence 56777777777777776533 12233333334444443 233344445666655 6788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 473 TATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 473 n~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
...|.+..|. ...+.-+.|++ |+--.-+||.||-+-++-=++..|+
T Consensus 210 ~elln~q~ee--~~~Lk~IAekQ---------------lEEALeTlq~EReqk~alkkEL~q~ 255 (772)
T KOG0999|consen 210 TELLNSQLEE--AIRLKEIAEKQ---------------LEEALETLQQEREQKNALKKELSQY 255 (772)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH---------------HHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 8888876553 34444555543 5555567888887766655555554
No 65
>KOG2129|consensus
Probab=88.67 E-value=46 Score=37.34 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 450 EIFAGFKSEMES----MSSKINKLEKETATWKQRWEKS------HEAYL----EMSNEKTKAESELITTCRQLAALLKLC 515 (565)
Q Consensus 450 EvF~TFKkEMEK----MSKKiKKLEKEn~~wKrK~E~s------NkaLl----eMaEER~k~~kEle~l~kKieKLE~LC 515 (565)
++|.|.-+|-|- +=|+|.+||-|...|..|++.- -+.|. --..+-+...-+++.++..+++|..-|
T Consensus 190 ~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l 269 (552)
T KOG2129|consen 190 QLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYL 269 (552)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555543 4688999999999999998641 11111 011233334445666666666666666
Q ss_pred HHHHHH
Q psy825 516 RTLQTE 521 (565)
Q Consensus 516 RALQ~E 521 (565)
++-|.+
T Consensus 270 ~~Aqk~ 275 (552)
T KOG2129|consen 270 SRAQKS 275 (552)
T ss_pred HHHHHH
Confidence 655544
No 66
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.65 E-value=16 Score=33.92 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q psy825 285 ELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKL 364 (565)
Q Consensus 285 ELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKF 364 (565)
.|-..+|+++-++..++-....+..++|.+..|+.+...--+.+..++-++..-.. .=.++..+|
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~---------------el~~l~~ry 84 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQ---------------ELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 45567788999999999999999999999999998755555555444433332222 222555667
Q ss_pred HHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHH
Q psy825 365 ENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQ 402 (565)
Q Consensus 365 Q~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQ 402 (565)
+++|-=+-. ..+....|+.+-.+|++=++..|++
T Consensus 85 ~t~LellGE----K~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 85 QTLLELLGE----KSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777754433 3344455666666666666665543
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.35 E-value=62 Score=38.43 Aligned_cols=249 Identities=17% Similarity=0.250 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy825 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEE 355 (565)
Q Consensus 276 le~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEe 355 (565)
+.++..-..+.-..+--+.-.+...+.+...||.+.|.++.++...-..-+|...-+-.+|..--.+.-|.-
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~-------- 381 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE-------- 381 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 333333333333333344455555666667777788888777777766666666555555555444333322
Q ss_pred HHHhHHHHHHHHHHHHHHHHh----hhccccchhhhccHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy825 356 KRKNVSVKLENTLSEISNQVQ----ESNNKTMKLRGDNLDM------------AKKFRELLIQYDEKEQELLDYKAKY-L 418 (565)
Q Consensus 356 KRkELseKFQ~tL~DIq~qME----E~~~~n~KL~~EN~eL------------~eKLKsLIEQYElREehf~Klq~Qv-~ 418 (565)
.-++..+.-..-|..++..++ ...++...+...+.-| ..+|..-+--++.--.++....... .
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222222211 1111111122222222 2333333332222222222111000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy825 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM-------SSKINKLEKETATWKQRWEKSHEAYLE-- 489 (565)
Q Consensus 419 ~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKM-------SKKiKKLEKEn~~wKrK~E~sNkaLle-- 489 (565)
...+.=..++.++.-|..++..||.=|+--.--+..++.+..++ -..|++|+-+....+-+|+.....|..
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111125666666666666677766666666666666655555 345666777776666677666666533
Q ss_pred ----------HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 490 ----------MSN-EKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 490 ----------MaE-ER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
+++ +-.....+....+.-+++|-.+.+.+-.++..+-.++.+.
T Consensus 542 ~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~L 595 (775)
T PF10174_consen 542 ANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGEL 595 (775)
T ss_pred hCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 2234455677888899999999999999999876665544
No 68
>KOG0976|consensus
Probab=87.66 E-value=73 Score=38.48 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 418 LEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSE----MESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 418 ~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkE----MEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
..+.+.+.+|..-=...++-..+|+.-+.--++..++.++- |-.....++=|+-++..+++.......+|++
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlE 341 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLE 341 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788877888888888888888888888888873 4444566666777777776655555555543
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=87.58 E-value=63 Score=37.66 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccc
Q psy825 354 EEKRKNVSVKLENTLSEISNQVQESNNK 381 (565)
Q Consensus 354 EeKRkELseKFQ~tL~DIq~qMEE~~~~ 381 (565)
++.+.++...|...|..+...+.+-...
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777778888888888777655443
No 70
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.05 E-value=56 Score=36.50 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 430 QISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 430 QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
.|...-+...++++-|..-+.+...|...++.+......++++...+.
T Consensus 295 ~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 295 ELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 444455667788888888888888888888888888888888777653
No 71
>KOG0978|consensus
Probab=87.01 E-value=71 Score=37.63 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=21.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 322 ELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 322 IlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
+.++.=+|+||-+|-.--+..+.+...+...+-.+
T Consensus 396 ~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r 430 (698)
T KOG0978|consen 396 VKARAETESLLQRLKALDKEERSEIRKQALDDAER 430 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44666677788777776666666665444444433
No 72
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.94 E-value=8.4 Score=37.24 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=59.4
Q ss_pred HHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy825 374 QVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFA 453 (565)
Q Consensus 374 qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~ 453 (565)
.+.........+...+.+|..+|-.+...-+..+..+......+..+...=..|+..+.-..+-..+...++.--++=+.
T Consensus 75 ~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 75 KLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555666677777777777776666666667777777777788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 454 GFKSEMESMSSKINKLEKETATWKQRWE 481 (565)
Q Consensus 454 TFKkEMEKMSKKiKKLEKEn~~wKrK~E 481 (565)
+..-+..-+..++.+|+.||..|-.+|=
T Consensus 155 ~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999988884
No 73
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.88 E-value=75 Score=37.77 Aligned_cols=244 Identities=13% Similarity=0.170 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 281 QKYSELYHDFNILSLLSKQNEKQIALLQNEKEI----LTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 281 KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~----lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
-+++.+...++.++-.+..++.+++....+++- +....+-+..+|.|++.+-=||.+-.-.|-.=.- ++. -
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt-~l~----~ 312 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT-RLE----T 312 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----H
Confidence 356666666777777777777766655444443 4445555666888898888888877644432111 111 1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 357 RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGE 436 (565)
Q Consensus 357 RkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~E 436 (565)
...-..-++..|.-+...+..-..+...|..++..|+.+|..--.+++.....+..++.-...+.--=..|+..+-++.-
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111123555555555666556667788888888999988888888888888877666555544444456666666666
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHH
Q psy825 437 KYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE---KETATWKQRWEKSHEAYLEMSNE--------KTKAESELITTC 505 (565)
Q Consensus 437 KFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE---KEn~~wKrK~E~sNkaLleMaEE--------R~k~~kEle~l~ 505 (565)
++..++.-|-+=.+.|..=-..++...-++.. . -....|..++|.++.-.-.+++. -.....+++.++
T Consensus 393 ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~ 471 (775)
T PF10174_consen 393 KINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQ 471 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555554322333333222220 0 00011223333333333222222 223445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 506 RQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 506 kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
..+..|..=..+||.+..+.-..|-
T Consensus 472 ~e~~~lk~~~~~LQ~eLsEk~~~l~ 496 (775)
T PF10174_consen 472 KELKELKAKLESLQKELSEKELQLE 496 (775)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7788887777788877655443333
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.58 E-value=5.1 Score=44.64 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=64.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 441 FQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMS-NEKTKAESELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 441 FQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMa-EER~k~~kEle~l~kKieKLE~LCRALQ 519 (565)
|.|||.-==--.-..+.+|..+-...+.|-+||..|+.+-...+..|-.-+ .+|....++.+.+..+..+|.++...||
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443322333445788999999999999999999999999999987744 6788889999999999999999999987
Q ss_pred HH
Q psy825 520 TE 521 (565)
Q Consensus 520 ~E 521 (565)
.+
T Consensus 137 ~~ 138 (472)
T TIGR03752 137 RR 138 (472)
T ss_pred HH
Confidence 65
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.53 E-value=61 Score=36.42 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHH
Q psy825 438 YDEFQQTLSRSNEIFAGFKSEMESMSSK----------INKLEKETATWKQRWEKSHEAYLEMS-------NEKTKAESE 500 (565)
Q Consensus 438 FeEFQDTL~KSNEvF~TFKkEMEKMSKK----------iKKLEKEn~~wKrK~E~sNkaLleMa-------EER~k~~kE 500 (565)
...+.+.|....+-......|++.++.. .+.++++...+...+...-..+-.-. ++-..+.++
T Consensus 312 ~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~ 391 (569)
T PRK04778 312 SDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQ 391 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3445566666666677777788777777 77777777777776665554443322 333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 501 LITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 501 le~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
+..+......+......|...-......|.
T Consensus 392 leeie~eq~ei~e~l~~Lrk~E~eAr~kL~ 421 (569)
T PRK04778 392 LEEIEKEQEKLSEMLQGLRKDELEAREKLE 421 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333333
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.08 E-value=31 Score=32.53 Aligned_cols=57 Identities=23% Similarity=0.490 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
|...|..--+-+++....|.-.++-+..--.-++.+..+++.||-+...|-.||+..
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333334444444444444444444444455555555555555555555555543
No 77
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.82 E-value=82 Score=37.23 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 388 DNLDMAKKFRELLIQYDEKEQELLDYKAKYLE 419 (565)
Q Consensus 388 EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~ 419 (565)
....+..++..+..+|......+..+...+..
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 397 ELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555444443333333
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.70 E-value=58 Score=35.38 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 292 ILSLLSKQNEKQIALLQ 308 (565)
Q Consensus 292 rlqkq~k~~qKk~dQLq 308 (565)
.++.++..+......+.
T Consensus 178 e~~~~i~~l~~~i~~l~ 194 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQ 194 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 79
>KOG0996|consensus
Probab=85.62 E-value=1.1e+02 Score=38.31 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=73.9
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHH
Q psy825 318 NSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFR 397 (565)
Q Consensus 318 l~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLK 397 (565)
++|.......|+++--+|+.+|..+.-++....+..+..+..+-++-. ........-..+...+...+..+.+.||
T Consensus 333 ~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~----~~kn~~~~~k~~~~~~e~~~vk~~E~lK 408 (1293)
T KOG0996|consen 333 RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAK----ELKNKFESLKKKFQDLEREDVKREEKLK 408 (1293)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666777777777777777775555555555555443322211 0111111111122233344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 398 ELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS----NEIFAGFKSEMESMSSKINKLEKET 473 (565)
Q Consensus 398 sLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KS----NEvF~TFKkEMEKMSKKiKKLEKEn 473 (565)
.+..+-..=+..+++.......+...=...+.++.--.....+++..+..- -++-..|+++-+..+..+.++|++.
T Consensus 409 ~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 555444444444443222222221111112222222222222222222222 2345567777777777888888888
Q ss_pred HHHHHHH
Q psy825 474 ATWKQRW 480 (565)
Q Consensus 474 ~~wKrK~ 480 (565)
..|..+.
T Consensus 489 ~~~~~~~ 495 (1293)
T KOG0996|consen 489 MPLLKQV 495 (1293)
T ss_pred HHHHHHH
Confidence 8776543
No 80
>KOG4360|consensus
Probab=85.55 E-value=74 Score=36.49 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy825 384 KLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTL 445 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL 445 (565)
+|...-.++..|++-+.-+-|.+.+|+.-|...-.+|...+.+|..+-..-..-|.+-|.-|
T Consensus 237 kLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456667777777777777777765444444444444444444444444444444333
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.31 E-value=73 Score=36.20 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 481 EKSHEAYLEMSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 481 E~sNkaLleMaEER~k~~kEle~l~kKieKLE~ 513 (565)
+..+..|-..-.+...+..++..+..++..|+.
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444443
No 82
>PRK01156 chromosome segregation protein; Provisional
Probab=85.26 E-value=83 Score=36.75 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEA 486 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNka 486 (565)
...+.+++...+.+..|..+...++...+....+
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666666655555443
No 83
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.00 E-value=35 Score=32.25 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 449 NEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 449 NEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
.+.|..+...++.....++.+.++...+.
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.98 E-value=0.28 Score=55.68 Aligned_cols=219 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFRE 352 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~E 352 (565)
-+|++.-..+|-+=+.++.-+.++++.++-....++..+..+..++.++..+++.|+.+=++++.-...+-++..+ +..
T Consensus 310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~-~~~ 388 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRR-ADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3467777788888888888888888888888877777777888888888888888887766666555444444432 222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q psy825 353 EEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMA-----------------KKFRELLIQYDEKEQELLDYKA 415 (565)
Q Consensus 353 EEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~-----------------eKLKsLIEQYElREehf~Klq~ 415 (565)
.+.....+.++......+...-+. ....|+..+.+|. .-...|.. |..-..++.
T Consensus 389 l~~e~~~L~ek~~~l~~eke~l~~----e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~-----El~~~~l~e 459 (713)
T PF05622_consen 389 LEFENKQLEEKLEALEEEKERLQE----ERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSA-----ELNPAELRE 459 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccccccccccccccccccccchhh-----hccchHHHH
Confidence 222333333333332222211111 0111222111111 00000000 000011333
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 416 KYLEMQKTENGLRKQIS-MYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEK 494 (565)
Q Consensus 416 Qv~~L~etE~eLR~QLn-iY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER 494 (565)
.+..|...-..|+..+. ...+++..++.-|.-.|.....+..+......++..|+.+...+.......+...-+.+..+
T Consensus 460 rl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk 539 (713)
T PF05622_consen 460 RLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELK 539 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 34344444455655443 33678888888888888888888888888888888887777766655443333333333444
Q ss_pred HHhHHHH
Q psy825 495 TKAESEL 501 (565)
Q Consensus 495 ~k~~kEl 501 (565)
..+..++
T Consensus 540 ~~le~~~ 546 (713)
T PF05622_consen 540 QKLEEHL 546 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444433
No 85
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=84.45 E-value=13 Score=37.35 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=44.7
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-------cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 343 REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK-------TMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKA 415 (565)
Q Consensus 343 KEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-------n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~ 415 (565)
++|.+++.+..+..+..+.-.--..+.++..+|+.|-.+ |.+|..+|.+|++=.=.|-+ -|.. -.++..
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd---dRqK-grklar 93 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD---DRQK-GRKLAR 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch---hHHH-hHHHhH
Confidence 345555555544443333322344455555555444443 45566666666543222221 0000 000111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhHHHHH
Q psy825 416 KYLEMQ-KTENGLRKQISMYGEKYDEFQ 442 (565)
Q Consensus 416 Qv~~L~-etE~eLR~QLniY~EKFeEFQ 442 (565)
.-+.|- -+=..||..+..|..|..+++
T Consensus 94 EWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 94 EWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112221 133468888999988888764
No 86
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.34 E-value=1.3 Score=50.42 Aligned_cols=112 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS-------------NEIFAGFKSEMESMSSKINKLEKETATWKQR 479 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KS-------------NEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK 479 (565)
++.|...+...=.-||+||..|..-- .+...+ ...+..|+.+|+. .+..|+.+....+..
T Consensus 404 Lerq~~L~~kE~d~LR~~L~syd~e~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~---~l~~l~~~l~~~k~~ 476 (722)
T PF05557_consen 404 LERQKALATKERDYLRAQLKSYDKEE----TTMNPSEQDTQRIKEIEDLEQLVDEYKAELEA---QLEELEEELSEQKQR 476 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh----ccccCchhHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc
Confidence 33444334444457999999986422 222333 3445566666654 666777776666655
Q ss_pred HHHHHHHHHHH-----HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 480 WEKSHEAYLEM-----SNEK--TKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 480 ~E~sNkaLleM-----aEER--~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
.......+-.+ ..++ ......+..++.++..|+.-...|+.+-..|..+|..
T Consensus 477 ~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 477 NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp -----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222111 1111 1234566778888888888888888888888888875
No 87
>KOG0612|consensus
Probab=83.80 E-value=1.3e+02 Score=37.76 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-------hhhHHHHHhHHHHHHHHHHHH
Q psy825 268 DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQN-EKEILTLEN-------SKQELTREKLENLCRELQKQN 339 (565)
Q Consensus 268 ~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqK-EKD~lqsEl-------~KaIlaKsKLEsLCRELQKqN 339 (565)
.+..++++..++. ++...++.|+..+..+......+++ ++-.+|.+. ......+.+|+.+-|.|+++-
T Consensus 449 ~~~~~~~~~~~~~----~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel 524 (1317)
T KOG0612|consen 449 EKEKLDEKCQAVA----ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL 524 (1317)
T ss_pred HhhhHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655544 5556667777666666555555553 222222222 222234455555555555555
Q ss_pred HHHHHHHH
Q psy825 340 KAIREENL 347 (565)
Q Consensus 340 K~LKEEnk 347 (565)
+-++..+.
T Consensus 525 e~~q~~~~ 532 (1317)
T KOG0612|consen 525 EDAQKKND 532 (1317)
T ss_pred HHHHHHHH
Confidence 55544443
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.83 E-value=0.38 Score=54.55 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEM---QKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 413 lq~Qv~~L---~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
|+.++..+ ...=..|+.+...|.+.--.+++-|.+++ .|+..|+...+.+..|+.+......+
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~----~~~~qle~~k~qi~eLe~~l~~~~~~---------- 385 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR----ALKSQLEEYKKQIQELEQKLSEESRR---------- 385 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 55554432 33345677777777777777777776655 35555555444444444444333333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 490 MSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 490 MaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
...+.-++..+..++..|+.-...|..+|..|...+
T Consensus 386 ----~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 386 ----ADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp ----------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344444444444444444555555444433
No 89
>KOG0018|consensus
Probab=82.68 E-value=1.3e+02 Score=37.13 Aligned_cols=194 Identities=18% Similarity=0.287 Sum_probs=99.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHH
Q psy825 325 REKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYD 404 (565)
Q Consensus 325 KsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYE 404 (565)
|..|+-+--|||+.+..+.+.-=. +. +-+| -...+..++.+++.+|+.-.++ --..+..++--=|-+||
T Consensus 703 k~~l~~~~~El~~~~~~i~~~~p~-i~--~i~r--~l~~~e~~~~~L~~~~n~ved~------if~~f~~~igv~ir~Ye 771 (1141)
T KOG0018|consen 703 KRSLEQNELELQRTESEIDEFGPE-IS--EIKR--KLQNREGEMKELEERMNKVEDR------IFKGFCRRIGVRIREYE 771 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCch-HH--HHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhcCeeeehHH
Confidence 344555556667666666533222 22 1122 2235666677776666543332 01112222221256787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy825 405 EKEQELLDYKAKYLEMQKTENGLRKQISM-----YGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETAT-WKQ 478 (565)
Q Consensus 405 lREehf~Klq~Qv~~L~etE~eLR~QLni-----Y~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~-wKr 478 (565)
.|+. -........+|..+=..|..||.. -..+++-.+.++.+-+.-...+++.-+.|-+.+..+ .+... =+.
T Consensus 772 e~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~ 849 (1141)
T KOG0018|consen 772 EREL-QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKS 849 (1141)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 7765 222222222333333333333332 233445555566666666666666555555554443 11111 044
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 479 RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 479 K~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
+++.....+.+.-..=..+.+++..+.+.+..+++.+-.++.||..|+...+-
T Consensus 850 ~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl 902 (1141)
T KOG0018|consen 850 KFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKL 902 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 45554444444444444555667777888888889999999999998876553
No 90
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.67 E-value=62 Score=33.33 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 407 EQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSR---SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 407 Eehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~K---SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
+..+..++.++..+...-..++.+|..+...|...+..+.+ |..-|...+.++......+..++.+...++...+..
T Consensus 150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 150 LAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555556666777777777666665555 445555566666666666666666666666655555
Q ss_pred HHHHHH
Q psy825 484 HEAYLE 489 (565)
Q Consensus 484 NkaLle 489 (565)
...+..
T Consensus 230 ~~~~~~ 235 (423)
T TIGR01843 230 QLERQQ 235 (423)
T ss_pred HHHHHH
Confidence 554443
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.26 E-value=49 Score=38.75 Aligned_cols=59 Identities=7% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy825 390 LDMAKKFRELLIQYDEKEQELLD----YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS 448 (565)
Q Consensus 390 ~eL~eKLKsLIEQYElREehf~K----lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KS 448 (565)
..|++||+.+.+.++.=..-++. +..+.-.++..|..++..|..+.++.+.++.+|.+-
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777666554444444 222333467788888888888888887777666553
No 92
>PF13166 AAA_13: AAA domain
Probab=82.23 E-value=93 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 498 ESELITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 498 ~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
...+..+...+..+...+..++.+-++|...+.
T Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 423 EKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555444444444
No 93
>KOG0946|consensus
Probab=82.01 E-value=1.3e+02 Score=36.46 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=104.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---
Q psy825 352 EEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYL-------EMQ--- 421 (565)
Q Consensus 352 EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~-------~L~--- 421 (565)
++-+.-..+..+|.+.|.....+++.-......|..+|.+|.+++..++.+...-..+|.-++.|+. .+.
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~ 729 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGA 729 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHH
Confidence 3344555666778888888888877777677788889999999999887766655555554333321 011
Q ss_pred ----HHHHHHHHHHHHH---HHhHHHHHHHHhhhHHHHHHHHHHH----------------------------------H
Q psy825 422 ----KTENGLRKQISMY---GEKYDEFQQTLSRSNEIFAGFKSEM----------------------------------E 460 (565)
Q Consensus 422 ----etE~eLR~QLniY---~EKFeEFQDTL~KSNEvF~TFKkEM----------------------------------E 460 (565)
-...+|.+++.-| ..+-.-.+..|++-|..-..|+... .
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~ 809 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQ 809 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHH
Confidence 1122333333222 2222334444544455555554422 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 461 SMSSKINKLEKETATWKQRWEKSHEAYLEM-------SNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLA 527 (565)
Q Consensus 461 KMSKKiKKLEKEn~~wKrK~E~sNkaLleM-------aEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~ 527 (565)
.....+.+++-+..++-.+....+..+-.| +.+.....+++-.+..++.-+.+|+..+...|+.|..
T Consensus 810 ~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~ 883 (970)
T KOG0946|consen 810 ELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEA 883 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence 334555556666666655555555555443 4555566666777777788888888888888877763
No 94
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=81.76 E-value=1.2e+02 Score=35.99 Aligned_cols=123 Identities=23% Similarity=0.264 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH------HHHHhH
Q psy825 277 KIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIRE------ENLQKF 350 (565)
Q Consensus 277 e~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKE------Enk~r~ 350 (565)
..|++-.++.--+.+.++.++..+.++..-+.++...|...-. . +|.=|+++|.+|++.+-.++- ++.+.+
T Consensus 502 k~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~--~-Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~ 578 (786)
T PF05483_consen 502 KQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNT--Q-LRNELESVKEELKQKGEEVKCKLDKSEENARSI 578 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHH
Confidence 4566666666677777777777777777777666665443332 2 488888888888888876652 111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHH
Q psy825 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQ 402 (565)
Q Consensus 351 ~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQ 402 (565)
.-+..+..--.-.|.+.++-+..+|+.....-..|.++|..|..++-.-+.|
T Consensus 579 e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq 630 (786)
T PF05483_consen 579 ECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQ 630 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222223455566666666654444445566665555554444433
No 95
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.68 E-value=1.1e+02 Score=36.78 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHH---------------H----HHHHHHH--------------HHHHHHHHHHH
Q psy825 384 KLRGDNLDMAKKFRELLIQYDEKEQELL---------------D----YKAKYLE--------------MQKTENGLRKQ 430 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYElREehf~---------------K----lq~Qv~~--------------L~etE~eLR~Q 430 (565)
-|+-||..|+-+|+-|-.|.-.+|..-. + |+.|+.+ |.+.=..++..
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E 470 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE 470 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 4788999999999988877665554221 0 4444433 22222223333
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy825 431 ISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAA 510 (565)
Q Consensus 431 LniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieK 510 (565)
=.-|.+=|.+=.+.|-++-..|+ -||.+ |--|....-.++..+..-|-..=.|...+.-.+.+-...+.+
T Consensus 471 nk~~~~~~~ekd~~l~~~kq~~d---~e~~r-------ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~R 540 (861)
T PF15254_consen 471 NKRLRKMFQEKDQELLENKQQFD---IETTR-------IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIER 540 (861)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH---HHHHH-------HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHH
Confidence 33344445555555555555553 12222 122333333333344444444444555566666677788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q psy825 511 LLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 511 LE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|.-|-|+||.=-+.|+.-|--..
T Consensus 541 L~eLtR~LQ~Sma~lL~dls~D~ 563 (861)
T PF15254_consen 541 LRELTRTLQNSMAKLLSDLSVDS 563 (861)
T ss_pred HHHHHHHHHHHHHHHhhhccccc
Confidence 99999999998888887665443
No 96
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.13 E-value=1.1e+02 Score=35.05 Aligned_cols=231 Identities=15% Similarity=0.186 Sum_probs=114.3
Q ss_pred cHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825 258 KTDVMLQMFND--SQTPDEKFKIISQKYSELYHDFN-ILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE 334 (565)
Q Consensus 258 ~~~~LmqsLn~--L~TpEEKle~L~KKYsELl~E~R-rlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE 334 (565)
....-|++|.. .+|.-=..+..-+|.--+..+.| -|..+..+++.+...|-.|++|...|-. +.+-|||
T Consensus 269 ~a~~~~~~~~~p~~~svpy~~a~~n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQ---L~kIKLE----- 340 (518)
T PF10212_consen 269 RAAAYMSSLKKPCPESVPYEEALANRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQ---LAKIKLE----- 340 (518)
T ss_pred HHHHHHHHhcCCCCccCChHHHHhhhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----
Confidence 34556777742 11111122333344445555544 5788999999999999999999775544 3455665
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHh---hhcccc-------chhhhccHHHHHHHHHHHHHHH
Q psy825 335 LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQ---ESNNKT-------MKLRGDNLDMAKKFRELLIQYD 404 (565)
Q Consensus 335 LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qME---E~~~~n-------~KL~~EN~eL~eKLKsLIEQYE 404 (565)
+.|+.+.+..... ...+...+..+++.-.. +..... .....-...+.--....+.--+
T Consensus 341 --KEnkRiadLekev----------ak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~e 408 (518)
T PF10212_consen 341 --KENKRIADLEKEV----------AKGQVAESSQESSVLSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEE 408 (518)
T ss_pred --HHHHHHHHHHHHH----------hccccccchhhhhhhcccccccccccccccccccccccccccccccccccCCchh
Confidence 4444333222211 00011111111111000 000000 0000000000000000011224
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 405 EKEQELLD-YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 405 lREehf~K-lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
.||.-+.. |..++..|...=.........|..-+.-++.-|..+-.-=.+...|+..+...+.+|+.|..+-++-||.-
T Consensus 409 sRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~Q 488 (518)
T PF10212_consen 409 SREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQ 488 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45544333 55566655555555555666666666666666666655556677788888889999999988888888764
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy825 484 HEAYLEMSNEKTKAESELITTCRQLAAL 511 (565)
Q Consensus 484 NkaLleMaEER~k~~kEle~l~kKieKL 511 (565)
=..+. |-=-.+...+......|+.|
T Consensus 489 Ls~MS---EHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 489 LSMMS---EHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33332 32223444444444444444
No 97
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.71 E-value=91 Score=33.30 Aligned_cols=204 Identities=18% Similarity=0.267 Sum_probs=98.8
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhh
Q psy825 310 EKEILTLENSKQELTREKLENLCRELQKQNKAI---REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLR 386 (565)
Q Consensus 310 EKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~L---KEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~ 386 (565)
.++.++.+.+....-|+.|..=.||+--+-+.+ +++-...+.+-..+|.++.++.+....++-.-....+..+ ...
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~ 106 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGG 106 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccC
Confidence 334445555544455555555445444443333 3444556667778888888888886666655544433222 111
Q ss_pred hccHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q psy825 387 GDNLDMAKKFRELLIQYDEKEQ------ELL----DYKAKYLEMQK------TENGLRKQISMYGEKYDEFQQTLSRSNE 450 (565)
Q Consensus 387 ~EN~eL~eKLKsLIEQYElREe------hf~----Klq~Qv~~L~e------tE~eLR~QLniY~EKFeEFQDTL~KSNE 450 (565)
-.-..|...+..|.--.+.+-. .|- .+..++..... .=.+|.+++.....+-.+|..=+..=-+
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELAN 186 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233333333322222211 111 12222221110 0112333333333333333322222112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 451 IFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTE 521 (565)
Q Consensus 451 vF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~E 521 (565)
--..|..+|-++..++- .++.+.+..+.-+++..........++..+...+..|+..+.+|+..
T Consensus 187 eaqe~he~m~k~~~~~D-------e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 187 EAQEYHEEMIKLFEEAD-------ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22556666666655554 44555555555666666666667777777888887777777777655
No 98
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.11 E-value=96 Score=32.69 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCR 506 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~k 506 (565)
+...|....+...+.++.|..-++-...++.+.+........|+.+......|.+.+..-+-.+..|+.+|...+..+..
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 34455566667777888888888888999999999999999999999999999999999888899999999999999988
Q ss_pred HHHHHHHHH
Q psy825 507 QLAALLKLC 515 (565)
Q Consensus 507 KieKLE~LC 515 (565)
+...|-|=|
T Consensus 306 ~~~~l~GD~ 314 (344)
T PF12777_consen 306 QLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHH
T ss_pred HhcccHHHH
Confidence 888886644
No 99
>KOG0946|consensus
Probab=77.78 E-value=1.7e+02 Score=35.44 Aligned_cols=36 Identities=8% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy825 463 SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAE 498 (565)
Q Consensus 463 SKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~ 498 (565)
++..+.+|++...+..++---|.-+.++.|++..+.
T Consensus 847 a~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 847 ANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 667778888888888887777777777777665443
No 100
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=77.57 E-value=57 Score=29.78 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy825 322 ELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQE 377 (565)
Q Consensus 322 IlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE 377 (565)
.+...-...+-++||.....+.........+-...|..+...|...|..+-..+..
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~ 127 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAK 127 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666677776666666655555666666777777777776666555443
No 101
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.13 E-value=1e+02 Score=32.36 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH---HHHHHHHHHHHHhhhccc-----cchhhhccHHHHHHHHH
Q psy825 327 KLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVK---LENTLSEISNQVQESNNK-----TMKLRGDNLDMAKKFRE 398 (565)
Q Consensus 327 KLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseK---FQ~tL~DIq~qMEE~~~~-----n~KL~~EN~eL~eKLKs 398 (565)
.|.+.|--|++.|..+..+-...-..--.+=+.+..+ |.+.++-| +-.+.. ...|..-...+..++..
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~l----e~~~~~~l~~ak~eLqe~eek~e~~l~~ 85 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDIL----EYSNHKQLQQAKAELQEWEEKEESKLSK 85 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH----HccChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566677788888877765544333322232233333 33333333 222221 12222222334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 399 LLIQYDEKEQELLDYKAKYLEMQ-----------KTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 399 LIEQYElREehf~Klq~Qv~~L~-----------etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
|-.|-+.=+..+.+.+..+..|+ -+=..|..||..-.+-+.. =|..-+ .-++.++..|+.++.
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd---Eldel~---e~~~~el~~l~~~~q 159 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD---ELDELN---EMRQMELASLSRKIQ 159 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHH
Confidence 54444444444444444443321 1223455555544444332 222222 345778888887776
Q ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhh
Q psy825 468 KLEKETAT-WKQR-WEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKK 545 (565)
Q Consensus 468 KLEKEn~~-wKrK-~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~~~~~~~ 545 (565)
.-..+... +-.+ ......+++.++-+...+.+++..++.-++.|+.-+..|.++-.+|.....+..-.=.+.+ -
T Consensus 160 ~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dv----l 235 (258)
T PF15397_consen 160 EKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADV----L 235 (258)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHH----h
Confidence 54444332 2223 3446678899999999999999999999999999999999999999988874322222222 3
Q ss_pred hccccCCC
Q psy825 546 FDRRNCNN 553 (565)
Q Consensus 546 ~~~~~~n~ 553 (565)
+.+|-|-.
T Consensus 236 l~rpKCTP 243 (258)
T PF15397_consen 236 LRRPKCTP 243 (258)
T ss_pred cCCCCCCC
Confidence 56788854
No 102
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.90 E-value=1.7e+02 Score=34.79 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAE 524 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~ 524 (565)
..|..++..--.....+.+....|..+-......+-++.+.-......+..+...+..+......++.....
T Consensus 371 ~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 371 EELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444333333333333333333334444444555544444555544444
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.86 E-value=84 Score=31.38 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 407 EQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 407 Eehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
+..+.....++..+...=..|..+|..-+.....++-.-.+.++-+..|...|..+..+++..|.-....-+++...
T Consensus 126 E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 126 EQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555556666667777788888888888888888888888888888877777777665555544444433
No 104
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.49 E-value=1.3e+02 Score=34.42 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy825 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYS 536 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s 536 (565)
+|-.+|+.+++.|+---.+|++-.-....+.-.|-...+.|-..+.++.--++.-|.=+.+||+.|..|...|+.. |-|
T Consensus 288 ~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq-~Is 366 (622)
T COG5185 288 QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ-GIS 366 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-CCC
Confidence 5667888888888876666665433334444556666677778888888888888999999999999999999877 666
Q ss_pred hhhhhhhhh
Q psy825 537 YLILSYMKK 545 (565)
Q Consensus 537 ~~~~~~~~~ 545 (565)
..-...|++
T Consensus 367 ~e~fe~mn~ 375 (622)
T COG5185 367 TEQFELMNQ 375 (622)
T ss_pred HHHHHHHHH
Confidence 666666654
No 105
>PRK09039 hypothetical protein; Validated
Probab=76.35 E-value=1.1e+02 Score=32.55 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE 470 (565)
.|...+..|-.+|+.-+..-..++.++......-..+..++..+.+...+-....+-++---...+.+|+.+...+-.|+
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555433333333333332222223334444444333333333333333333344555555555555554
Q ss_pred HHHHHHHHH
Q psy825 471 KETATWKQR 479 (565)
Q Consensus 471 KEn~~wKrK 479 (565)
-+......+
T Consensus 158 ~~L~~ae~~ 166 (343)
T PRK09039 158 AALDASEKR 166 (343)
T ss_pred HHHHHHHHH
Confidence 444444433
No 106
>KOG0962|consensus
Probab=76.25 E-value=2.2e+02 Score=35.94 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 465 KiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
+++.++.|...+....-... +..+.+++..+...++.+......|.+.|..++.+=..+...|...
T Consensus 1016 q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~ 1081 (1294)
T KOG0962|consen 1016 KLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREK 1081 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445555555544433333 5668899999999999999999999999999999999888888744
No 107
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=76.11 E-value=1.7e+02 Score=34.41 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 277 KIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 277 e~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
+.|...|-.|.+-|-=+..-+..+=-|.++-+ .+. ..-...+|.+|+.....|...-.....+-+.-
T Consensus 195 esl~~~ll~L~arm~PLraSLdfLP~Ri~~F~-----~ra--------~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~L 261 (683)
T PF08580_consen 195 ESLYSSLLALFARMQPLRASLDFLPMRIEEFQ-----SRA--------ESIFPSACEELEDRYERLEKKWKKLEKEAESL 261 (683)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-----HHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776665555555544433333332 122 45688999999999999999999999999999
Q ss_pred HHhHHHH-----HHHHHHHHHHHHhhhccccchhhhc-----cHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy825 357 RKNVSVK-----LENTLSEISNQVQESNNKTMKLRGD-----NLDMAKKFRELLIQYDEKEQELLD--YKAKYLEMQKTE 424 (565)
Q Consensus 357 RkELseK-----FQ~tL~DIq~qMEE~~~~n~KL~~E-----N~eL~eKLKsLIEQYElREehf~K--lq~Qv~~L~etE 424 (565)
|+|+.+. |.....+|+..++.--.--.++... +..-..+|..-|+.|+..=.|+-- |++.+.. =..
T Consensus 262 K~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~s--Ii~ 339 (683)
T PF08580_consen 262 KKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLS--IID 339 (683)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHH--hhh
Confidence 9999976 9999999988877544332333322 122356777777777776666655 4555433 334
Q ss_pred HHHHHHHH
Q psy825 425 NGLRKQIS 432 (565)
Q Consensus 425 ~eLR~QLn 432 (565)
..+...++
T Consensus 340 ~gv~~r~n 347 (683)
T PF08580_consen 340 KGVADRLN 347 (683)
T ss_pred hhHHHHhh
Confidence 44666666
No 108
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.56 E-value=95 Score=31.36 Aligned_cols=116 Identities=16% Similarity=0.334 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH-------HH
Q psy825 395 KFRELLIQYDEKEQELL--------DYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKS-------EM 459 (565)
Q Consensus 395 KLKsLIEQYElREehf~--------Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKk-------EM 459 (565)
.+..+|+.||..=.++- .....+..+..--..+.+.|+.--.-|..+..-..++-++..+|+. .+
T Consensus 41 ~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~ 120 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCI 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555433321 1445555565555667778887777777777777788888888865 45
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy825 460 ESMSSKINKLEKETATWKQR-WEKSHEAYLEMSNEKTKAESELITTCRQLAA 510 (565)
Q Consensus 460 EKMSKKiKKLEKEn~~wKrK-~E~sNkaLleMaEER~k~~kEle~l~kKieK 510 (565)
+.+-.++.+.+.-...||.. .+..+.|-.+++.-|.....++..++..+.+
T Consensus 121 ~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 121 EEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566666666666666553 2233444444555555555555555554443
No 109
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.53 E-value=1.7e+02 Score=33.20 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q psy825 310 EKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEIS 372 (565)
Q Consensus 310 EKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq 372 (565)
+.+.+..++...-.....++.-.++|+...-....-...+...-++.|..|...|++.=++|=
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~il 123 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIF 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455555554444444444555666677778888887766663
No 110
>KOG0288|consensus
Probab=73.41 E-value=1.2e+02 Score=34.00 Aligned_cols=66 Identities=24% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy825 283 YSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQ 348 (565)
Q Consensus 283 YsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~ 348 (565)
-++.....-.+...+++..+++..+..+++.++.|-.-...--..+|-+-++||.+|..+-+|..+
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556677778888888888888888888887655555567889999999999999999987
No 111
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.85 E-value=1e+02 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 498 ESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 498 ~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
..++....++...+..=|..|+.+=..|.++|++-
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888999999999988888888763
No 112
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.54 E-value=1.4e+02 Score=32.06 Aligned_cols=175 Identities=19% Similarity=0.333 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 277 KIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 277 e~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
..|..+|+.|..+++.+...+.-+. --|.-|+.+|+.|+..+.......++.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek----------------------------~~~~~L~~e~~~lr~~sv~~~~~aEqE 74 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEK----------------------------ARCKHLQEENRALREASVRIQAKAEQE 74 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788877777666555443221 248889999999999998766554444
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy825 357 RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD-YKAKYLEMQKTENGLRKQISMYG 435 (565)
Q Consensus 357 RkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K-lq~Qv~~L~etE~eLR~QLniY~ 435 (565)
=--|+.. .+..|+.- ..+. ..|+-.|+..|+-+-. |..++..+...-.+|-.+|.--.
T Consensus 75 EE~isN~---LlKkl~~l-----------~keK-------e~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 75 EEFISNT---LLKKLQQL-----------KKEK-------ETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHH---HHHHHHHH-----------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333322 23333221 1122 3567789888887765 88888888877777777765321
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 436 EKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE--MSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 436 EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle--MaEER~k~~kEle~l~kKieKLE~ 513 (565)
+ | .|.++.++|.+|+++........+..-.--|+ .+-|. ...--+-.|.+++++|+.
T Consensus 134 E----~----------------~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~-EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 134 E----Y----------------LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ-EQEALVNRLWKQMDKLEA 192 (310)
T ss_pred H----H----------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1 1 14566666666666665544444432222222 11110 011123467788888888
Q ss_pred HHHHHHHH
Q psy825 514 LCRTLQTE 521 (565)
Q Consensus 514 LCRALQ~E 521 (565)
--|.||..
T Consensus 193 eKr~Lq~~ 200 (310)
T PF09755_consen 193 EKRRLQEK 200 (310)
T ss_pred HHHHHHHH
Confidence 88888775
No 113
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=71.85 E-value=1.1e+02 Score=30.34 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy825 421 QKTENGLRKQISMYGEKYDEFQQTLSRS 448 (565)
Q Consensus 421 ~etE~eLR~QLniY~EKFeEFQDTL~KS 448 (565)
..+-.+.+.++..|++.|+.-|..|.++
T Consensus 135 k~~r~e~qk~~~~yv~~~k~~q~~~~~~ 162 (165)
T PF09602_consen 135 KLTREEWQKVLDAYVEQAKSSQKELAKK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345567888999999999998777664
No 114
>KOG0977|consensus
Probab=71.01 E-value=2e+02 Score=33.13 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=48.0
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy825 433 MYGEKYDEFQQTLSRSNEIFAGFKSEMESM-------SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTC 505 (565)
Q Consensus 433 iY~EKFeEFQDTL~KSNEvF~TFKkEMEKM-------SKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~ 505 (565)
.|..|..+.+..-..-|....-++.|+..| ..++-.||.-|..+-.+.+..+-. +.+++......|....
T Consensus 272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~q---l~e~~r~~e~~L~~kd 348 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQ---LDEDQRSFEQALNDKD 348 (546)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhh---hhhhhhhhhhhhhhHH
Confidence 466666666655555555566666666655 455566666666665555554433 3345444444455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 506 RQLAALLKLCRTLQTER 522 (565)
Q Consensus 506 kKieKLE~LCRALQ~ER 522 (565)
..+.+|.-=|.+|=.|.
T Consensus 349 ~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVEL 365 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.99 E-value=90 Score=32.90 Aligned_cols=87 Identities=15% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN 492 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE 492 (565)
+...+..+.+.|..|.++|.....-..++. +||..+......|..+-...-+-+-.-...++.+.+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~--------------~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELD--------------QELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666555544433332 344444444444444333333334455556666777
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy825 493 EKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 493 ER~k~~kEle~l~kKieKLE~ 513 (565)
++.....++.....++++|.+
T Consensus 114 e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777666666654
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.84 E-value=1.2e+02 Score=30.60 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHH---HHHHHHHHHH
Q psy825 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFREL---LIQYDEKEQE 409 (565)
Q Consensus 333 RELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsL---IEQYElREeh 409 (565)
-+||-.|+.|.+|+...-+. -+.=.+. |.+|..++..|+..++++ +..|-..+..
T Consensus 11 ~dL~~~n~~L~~en~kL~~~-ve~~ee~---------------------na~L~~e~~~L~~q~~s~Qqal~~aK~l~eE 68 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRS-VETAEEG---------------------NAQLAEEITDLRKQLKSLQQALQKAKALEEE 68 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887642221 1111222 334444555555444443 2233333333
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 410 LLD-------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEK 482 (565)
Q Consensus 410 f~K-------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~ 482 (565)
+.+ +.++...+..+=..|...-...+.+...||+=-. ....|++.+.++++.|=.++..|+++.=.
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~-------kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG-------KLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 333 2222222333323333333333444444443332 33567888888888887788888776422
Q ss_pred HHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 483 SHEAYL---EMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 483 sNkaLl---eMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
+..-+. ..+.+|+. ++..+..-++-...+...|..+-..|...|
T Consensus 142 ~e~l~~~~da~l~e~t~---~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 142 FESLICQRDAILSERTQ---QIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 24555554 344455556666666666666666666655
No 117
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=70.56 E-value=1.9e+02 Score=34.21 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHH
Q psy825 328 LENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKE 407 (565)
Q Consensus 328 LEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElRE 407 (565)
|..++++.=.+-..+-..-.+-....-+.|..+.+-|-..+..|...+.=-... .+ .-..|+++|.+-+
T Consensus 352 l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s------~~-----ak~~l~~~f~~~~ 420 (742)
T PRK05561 352 LKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRES------DE-----PKANLMARFDLSE 420 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC------cc-----HHHHHHHHhCCCH
Confidence 334444443333333322222223334456666666777777776666422111 01 2334456666667
Q ss_pred HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 408 QELLD-YKAKYLEMQKTEN-GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 408 ehf~K-lq~Qv~~L~etE~-eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
.|++- +.-++..|+..|. .|+.++....+.+++++.+|+.-..+..-.+.|+....++--
T Consensus 421 ~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg 482 (742)
T PRK05561 421 IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482 (742)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 77766 6667777887775 799999999999999999999999999888888887766543
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.03 E-value=3.4e+02 Score=34.86 Aligned_cols=181 Identities=14% Similarity=0.211 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc---cchhhhccHHHHHHHHHHHHHH------HHHHHHHH--H--------------H
Q psy825 359 NVSVKLENTLSEISNQVQESNNK---TMKLRGDNLDMAKKFRELLIQY------DEKEQELL--D--------------Y 413 (565)
Q Consensus 359 ELseKFQ~tL~DIq~qMEE~~~~---n~KL~~EN~eL~eKLKsLIEQY------ElREehf~--K--------------l 413 (565)
.....++..|..|...+..-+.. ...++.+.......+..+-.|- -.|-.||. + +
T Consensus 911 ~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~L 990 (1486)
T PRK04863 911 RFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKL 990 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHH
Confidence 33556788888888877654433 1223333222222222222211 12333542 1 4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy825 414 KAKYLEMQKTENGLRKQ-------ISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN-KLEKETATWKQRWEKSHE 485 (565)
Q Consensus 414 q~Qv~~L~etE~eLR~Q-------LniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK-KLEKEn~~wKrK~E~sNk 485 (565)
+..+..+.+.+..++.| ++-|...+..++..+..-++....++.+|..|.=..- -+|.- ...+-+..+.
T Consensus 991 e~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~---~~~~~~~l~~ 1067 (1486)
T PRK04863 991 RQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEER---ARARRDELHA 1067 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHH---HHHhHHHHHH
Confidence 44455555555554444 4445555555555555555555555555555411100 00111 1222256666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhh
Q psy825 486 AYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSY 542 (565)
Q Consensus 486 aLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~~~~ 542 (565)
.|..--.-|..+.+.+...+..++.|..-++.++.+=..+...+....+.-++|+..
T Consensus 1068 ~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~ 1124 (1486)
T PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRL 1124 (1486)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555666666666666666666666666666666666666666555555544
No 119
>KOG4083|consensus
Probab=68.95 E-value=37 Score=34.17 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc
Q psy825 306 LLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK 381 (565)
Q Consensus 306 QLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~ 381 (565)
.+-.++.....|..|++.+..-|+++-++|+|+---+|+.-.+.....-+.=+..++.|+.+..+++.++-...-.
T Consensus 70 s~pr~r~~~~~e~~k~~~LAr~le~~~q~L~k~daf~Ke~larlEen~~e~ykv~~eqy~~aaE~VekrFk~~~~~ 145 (192)
T KOG4083|consen 70 SIPRERQSSAEEGEKAARLARDLEEKSQELKKQDAFYKEQLARLEENSSEFYKVTTEQYQKAAERVEKRFKAYHRE 145 (192)
T ss_pred cccccchhHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 3456677788899999999999999999999998888877765444444455577789999999999998766644
No 120
>KOG0982|consensus
Probab=68.85 E-value=2.1e+02 Score=32.45 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQ 443 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQD 443 (565)
|+-...+...--.-..++..++.+||..|..+.-.|-+||-.-|.--. ++..-|......+-.-.++-..
T Consensus 227 lerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElrae-------E~l~Ee~rrhrEil~k~eReas--- 296 (502)
T KOG0982|consen 227 LERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAE-------ESLSEEERRHREILIKKEREAS--- 296 (502)
T ss_pred HHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHH---
Confidence 444444444333344555678899999999888888888754332111 1111111111111111111111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy825 444 TLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKL 514 (565)
Q Consensus 444 TL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~L 514 (565)
-+.|+..-++..|+-|+..++.=....-..+=++++++++....++.++.++--++.|
T Consensus 297 -------------le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l 354 (502)
T KOG0982|consen 297 -------------LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL 354 (502)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1345555567777777777777666666666667777777777777777776544443
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.70 E-value=2.5e+02 Score=33.20 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy825 270 QTPDEKFKIISQKYSELYHD--FNILSLLSKQNEKQIALLQNEKEILTLENSK 320 (565)
Q Consensus 270 ~TpEEKle~L~KKYsELl~E--~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~K 320 (565)
++|.|=+++|. ++.+.+.+ +.++.+-....++++.+|+.++++-..++..
T Consensus 532 p~~~E~l~lL~-~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 532 PSPQECLELLS-QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877 45555544 3667777777888888888777666666553
No 122
>KOG0243|consensus
Probab=68.13 E-value=3.1e+02 Score=34.06 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=15.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q psy825 441 FQQTLSRSNEIFAGFKSEMESMSSK 465 (565)
Q Consensus 441 FQDTL~KSNEvF~TFKkEMEKMSKK 465 (565)
.+..|.++|.-|.+++.|+.+|.-.
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666544
No 123
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.11 E-value=99 Score=28.38 Aligned_cols=29 Identities=14% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 454 GFKSEMESMSSKINKLEKETATWKQRWEK 482 (565)
Q Consensus 454 TFKkEMEKMSKKiKKLEKEn~~wKrK~E~ 482 (565)
.|..|+..+..++..|...|..|-...|.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777666554
No 124
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.10 E-value=1.1e+02 Score=28.51 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=59.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHH
Q psy825 321 QELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELL 400 (565)
Q Consensus 321 aIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLI 400 (565)
++.+-++|.+--|-+-.+.-.++++..+...+.+..|.+|+.-. ... ..+.........|+.+-.+|..|+..+.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~----~~~-e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM----EEN-EELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788888888888888877777777777766421 111 1222223334556666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy825 401 IQYDEKEQELLDYKAKYLEM 420 (565)
Q Consensus 401 EQYElREehf~Klq~Qv~~L 420 (565)
+=|-.+.+.++.|+.-+..+
T Consensus 89 ellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 89 ELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHhcchHHHHHHHHHHHHHH
Confidence 77777777776655444433
No 125
>KOG0804|consensus
Probab=66.29 E-value=2e+02 Score=32.73 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEK----EQELLDYKAKYLE 419 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElR----Eehf~Klq~Qv~~ 419 (565)
+||..+++.+.++.+..+.|..|...-.-...+++.+.+++..- ++.+..|++|+..
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555554444434444333333456666666555422 2333335555543
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.74 E-value=1.7e+02 Score=30.31 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEK 437 (565)
Q Consensus 392 L~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EK 437 (565)
+..-+..+-+-|+..+..+.++..|+..+...-..++.+++.-..+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666666666554443
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.74 E-value=2.1e+02 Score=30.91 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 468 KLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 468 KLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
.|..|-..++.|....|.-|--+.-....+--+++.+-.-.--|.-=..++|.|+.-+.+.|..
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777777655555544444456666666656666666777777765554443
No 128
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.64 E-value=57 Score=27.72 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHH
Q psy825 270 QTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332 (565)
Q Consensus 270 ~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLC 332 (565)
.+-++||+.|..+|..|..++..|..+. .+++.|++++. .|.-.+++|+|.+-
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~-------~~~~~ER~~L~---ekne~Ar~rvEamI 55 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQE-------KTWREERAQLL---EKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3457899999999998888877666555 45566776664 45557788888774
No 129
>KOG4302|consensus
Probab=64.31 E-value=3e+02 Score=32.54 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=81.0
Q ss_pred HHHHhHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHhHHHH---HHHHHHHHHHHHhhhccc---cc---
Q psy825 323 LTREKLENLCRELQKQNK----------AIREENLQKFREEEEKRKNVSVK---LENTLSEISNQVQESNNK---TM--- 383 (565)
Q Consensus 323 laKsKLEsLCRELQKqNK----------~LKEEnk~r~~EEEeKRkELseK---FQ~tL~DIq~qMEE~~~~---n~--- 383 (565)
.+..+|..||++|-.... .|++.-.......++-|....++ |-..+..|+.--++-+.. +.
T Consensus 72 ~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~ 151 (660)
T KOG4302|consen 72 VIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLI 151 (660)
T ss_pred HHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccc
Confidence 467778899998864432 45565555555566666555544 666666666543333322 11
Q ss_pred ----hhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy825 384 ----KLR-GDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEM------------QKTENGLRKQISMYGEKYDEFQQTLS 446 (565)
Q Consensus 384 ----KL~-~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L------------~etE~eLR~QLniY~EKFeEFQDTL~ 446 (565)
.+- ..-.+|+.+|..|=++|..|=+.+..|...+..+ ...+..|......|. +-=-.+||.
T Consensus 152 ~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~--~~is~etl~ 229 (660)
T KOG4302|consen 152 ADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQS--RSISDETLD 229 (660)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCccc--ccCCHHHHH
Confidence 111 1223589999999999999987776543332211 234444544444333 222345555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 447 RSNEIFAGFKSEMESMSSKINKLEKE 472 (565)
Q Consensus 447 KSNEvF~TFKkEMEKMSKKiKKLEKE 472 (565)
+=..+-..|+.+-.+-..+++-|--.
T Consensus 230 ~L~~~v~~l~~~k~qr~~kl~~l~~~ 255 (660)
T KOG4302|consen 230 RLDKMVKKLKEEKKQRLQKLQDLRTK 255 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444444333
No 130
>KOG1029|consensus
Probab=64.04 E-value=3.4e+02 Score=33.13 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q psy825 365 ENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD--------------YKAKYLEMQKTENGLRKQ 430 (565)
Q Consensus 365 Q~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K--------------lq~Qv~~L~etE~eLR~Q 430 (565)
++.+.++..|+....+.+..+...+..|...|+.|-.+...-+..+.+ +..++..+..+=.+|+++
T Consensus 415 rar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355667777777766666666666666666666665554433333332 445555555555677777
Q ss_pred HHHHHHhHH
Q psy825 431 ISMYGEKYD 439 (565)
Q Consensus 431 LniY~EKFe 439 (565)
|..|.++..
T Consensus 495 ikE~q~kl~ 503 (1118)
T KOG1029|consen 495 IKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHH
Confidence 777766654
No 131
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.46 E-value=2.1e+02 Score=31.58 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy825 443 QTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELI 502 (565)
Q Consensus 443 DTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle 502 (565)
.-|..+-+||..-+.++..|..-+.+++-||..+.-..+..-+-+-+|.+|-+.+..|++
T Consensus 113 nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 113 NQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 345667889999999999999999999999999988877777777666666666655554
No 132
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.85 E-value=2.9e+02 Score=31.84 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=78.2
Q ss_pred HHHHhH-HHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy825 355 EKRKNV-SVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKY----LEMQKTENGLRK 429 (565)
Q Consensus 355 eKRkEL-seKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv----~~L~etE~eLR~ 429 (565)
+-|.++ -.+|...|.++..+++.-..+...+..+...|..+|...-..=+..+..+......+ .+|.-|......
T Consensus 408 esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 408 ESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444 588999999999999888777788888998899998877555444444554433333 346667888889
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHH
Q psy825 430 QISMYGEKYDEFQQTLSRSNEIFAGFK 456 (565)
Q Consensus 430 QLniY~EKFeEFQDTL~KSNEvF~TFK 456 (565)
||++-+|-.-...+.|++--+.+.++|
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888888888888887
No 133
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=62.11 E-value=27 Score=30.60 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQ 402 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQ 402 (565)
-+|.+|.++...++.....+.+|..+|.-|+.=+..|+..
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999898888777653
No 134
>KOG0249|consensus
Probab=61.35 E-value=3.6e+02 Score=32.55 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHhhc----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q psy825 260 DVMLQMFN----DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCREL 335 (565)
Q Consensus 260 ~~LmqsLn----~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCREL 335 (565)
+-|...|. .+.--++|...||.+.+-+....-...+ .-.+--.-.-++...+.+..-+-...-.-..++.|-+++
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444442 2334467777777776555544333333 333333333445555555555555555566666666666
Q ss_pred HHHHHHHH
Q psy825 336 QKQNKAIR 343 (565)
Q Consensus 336 QKqNK~LK 343 (565)
|+.|-.|.
T Consensus 173 qe~naeL~ 180 (916)
T KOG0249|consen 173 EELNAELQ 180 (916)
T ss_pred HHHHHHHH
Confidence 66666554
No 135
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.30 E-value=1.2e+02 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 500 ELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 500 Ele~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
+++.+...+.+|+.+...++.++..|...+....
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444443
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=60.29 E-value=1.5e+02 Score=27.92 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE 470 (565)
.+..++|.+=+.+...|..+.+|+.++. .|..+|.-+.+.+.+..+.+..|...+.. ++.++.+|..||
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~-------~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LE 86 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQ-------QLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHH
Confidence 3556666666666666666666655554 45566666677777777777777666644 448899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 471 KETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 471 KEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
.+....-.+... ..+. +..+..+.+.++.=+.+|..+|..+-.++.+.
T Consensus 87 eele~ae~~L~e-------~~ek-------l~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 87 EELEEAEKKLKE-------TTEK-------LREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHH-------HHHH-------HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 887665544322 2222 34445555555555666666666666555443
No 137
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=59.23 E-value=1.5e+02 Score=31.17 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYK----AKYLEMQKTENGLRKQISMYGEKY 438 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq----~Qv~~L~etE~eLR~QLniY~EKF 438 (565)
..+.+|..++.+++.-...-..+..+...|..|++.--..+|--+..+..|+ +=..++...|.+|+.+-..|..||
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kf 245 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565555554444445555555677777555444444444444433 224567788999999999999999
Q ss_pred HHH
Q psy825 439 DEF 441 (565)
Q Consensus 439 eEF 441 (565)
.-+
T Consensus 246 RNl 248 (267)
T PF10234_consen 246 RNL 248 (267)
T ss_pred HhH
Confidence 843
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.85 E-value=2.3e+02 Score=29.43 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM--SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKM--SKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
++.-+.-|-....+++..|..-++--..-..-|... ......|..|...|+.+-...+..|..+..++.....++..+
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555444444444444222 334556777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 505 CRQLAALLKLCRTLQTE 521 (565)
Q Consensus 505 ~kKieKLE~LCRALQ~E 521 (565)
+.++.+++.-...+.+.
T Consensus 130 ~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 130 KERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777766655443
No 139
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.70 E-value=1.9e+02 Score=28.44 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE-MSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle-MaEER~k~~kEle~l~kKieKLE~ 513 (565)
..|..+|..+...+..|+.+...|+.+++..-+..-+ +..+...+..+++.++....+|..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777766654 455556667777777777666643
No 140
>KOG0993|consensus
Probab=58.48 E-value=3.2e+02 Score=31.03 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc----
Q psy825 306 LLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK---- 381 (565)
Q Consensus 306 QLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~---- 381 (565)
+++++=-+++..+.+.|-.|.-||.--+-+|...-... ..+-++-+.+..+..-||+.|+..+..+..+..+
T Consensus 296 ~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~----~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~lv~a 371 (542)
T KOG0993|consen 296 ILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQR----AQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARLVVA 371 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444334444455666666666655555544433322 2333455556666667888877666554433322
Q ss_pred -------cchhhhccHHHH---------------------HHHHHHHHHHHH--H-----HHHHHH--------HHHHHH
Q psy825 382 -------TMKLRGDNLDMA---------------------KKFRELLIQYDE--K-----EQELLD--------YKAKYL 418 (565)
Q Consensus 382 -------n~KL~~EN~eL~---------------------eKLKsLIEQYEl--R-----Eehf~K--------lq~Qv~ 418 (565)
...|+++|.-|+ +-|-.+.-+|-. + -.|... |+.|+.
T Consensus 372 ~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle 451 (542)
T KOG0993|consen 372 SETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLE 451 (542)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 234555554332 223333333321 1 112221 788888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy825 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKL 469 (565)
Q Consensus 419 ~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKL 469 (565)
.-...+..|+-||....+.-.... --|.+.|.||+.+-..+-+|
T Consensus 452 ~e~~~~~~le~ql~~~ve~c~~~~-------aS~~slk~e~erl~qq~eqi 495 (542)
T KOG0993|consen 452 KERQSEQELEWQLDDDVEQCSNCD-------ASFASLKVEPERLHQQCEQI 495 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccHHHHHHHHHHH
Confidence 888899999999998888766543 34889999999887544333
No 141
>KOG0995|consensus
Probab=58.35 E-value=3.6e+02 Score=31.50 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 275 KFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLEN 318 (565)
Q Consensus 275 Kle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl 318 (565)
|++.|-++|+.|-.|.+.++.-+.++.-+....-+....+..|.
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei 303 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI 303 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666666666655555555444444443333333333333
No 142
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.20 E-value=3.8e+02 Score=31.71 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSRSN----EIFAG---FKSEMESMSSKINKLEKETATWKQR 479 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~KSN----EvF~T---FKkEMEKMSKKiKKLEKEn~~wKrK 479 (565)
|-.-|+.--||=..++.+|+-=+ |+|.- -|.+||-....+.+=|+|...||.|
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433 22322 2344444444444444444444444
No 143
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.79 E-value=1.2e+02 Score=25.93 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 438 YDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 438 FeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
|++++.-+...=++++..+.|++.+..+...|..++..++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444444555555555555444444444444433
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.46 E-value=2.1e+02 Score=28.65 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQ 442 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQ 442 (565)
.|......+-.+...-+..+..++.++..+..+..+|.-.+.-+.+.+++|-
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443344444444445556666788888888888888888777777777654
No 145
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=56.75 E-value=2.2e+02 Score=28.56 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccH-HHHHHHHHHHH
Q psy825 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNL-DMAKKFRELLI 401 (565)
Q Consensus 323 laKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~-eL~eKLKsLIE 401 (565)
.++.||..||--+..-...+..+...+-..++.+-..|.+..+..=..|+.-+..-.+.+..+..... .+..=...+-.
T Consensus 2 ~~~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~ 81 (247)
T PF06705_consen 2 GTKSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVEN 81 (247)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 402 QYDEKEQELLD-YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS-NEIFAGFKSEMESMSSKINKLEKETATWKQR 479 (565)
Q Consensus 402 QYElREehf~K-lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KS-NEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK 479 (565)
+...+-..+.. +..-...+...+..+..........++.+...|.+. +++|..|..| +.-+.++|...+++=
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E------r~~R~erE~~i~krl 155 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE------RNEREEREENILKRL 155 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 480 WEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLC 515 (565)
Q Consensus 480 ~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LC 515 (565)
.+-.+..--.+-.|+..+...+..+..-++.+..-|
T Consensus 156 ~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~ 191 (247)
T PF06705_consen 156 EEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRR 191 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.35 E-value=2.5e+02 Score=29.66 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 450 EIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 450 EvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
.-......||..+......|.++...+..-.+..++.|..+-.+...+..+-..+-.....+.---..++.+|..+..++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677888888888888888888888888888888777777776666655655555555555555556665555554
Q ss_pred hh
Q psy825 530 NG 531 (565)
Q Consensus 530 k~ 531 (565)
.-
T Consensus 123 ~~ 124 (314)
T PF04111_consen 123 EY 124 (314)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 147
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=56.30 E-value=44 Score=27.41 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWE 481 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E 481 (565)
|-.|+.++.+.+.+++++...+..+-.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999988843
No 148
>KOG4360|consensus
Probab=56.11 E-value=3.8e+02 Score=31.14 Aligned_cols=181 Identities=18% Similarity=0.226 Sum_probs=110.4
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------------
Q psy825 257 PKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQEL------------- 323 (565)
Q Consensus 257 k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIl------------- 323 (565)
...+.|+.+|.+-.-+-| +-.+==+-|++-++-++.++.-+.-..++.--...+++-|+++.+.
T Consensus 62 ~d~d~lt~lle~k~~dlE---laAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~ 138 (596)
T KOG4360|consen 62 NDIDFLTELLEEKRRDLE---LAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESE 138 (596)
T ss_pred cchHHHHHHHhcccchhH---HHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeecccccc
Confidence 367778888865432222 1111122344555555555555555555555555566666665543
Q ss_pred ------------------HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHHHhhhcccc
Q psy825 324 ------------------TREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVS---VKLENTLSEISNQVQESNNKT 382 (565)
Q Consensus 324 ------------------aKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELs---eKFQ~tL~DIq~qMEE~~~~n 382 (565)
.+.-||.||- ..|-+++||.+.-.+-..-|.+-. ++=+.+..+.-.++..- |
T Consensus 139 ~~~v~~~P~~~~~s~S~~~~~~~EaL~e----kLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelrdt---N 211 (596)
T KOG4360|consen 139 AASVCSTPLVSNESRSAFQRELLEALQE----KLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDT---N 211 (596)
T ss_pred ccccccCCCccCcchhhHHHHHHHHHHh----hcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---H
Confidence 2333666654 446666666654444444454433 45566666776666443 4
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy825 383 MKLRGDNLDMAKKFRELLIQYDEKEQ---ELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSR 447 (565)
Q Consensus 383 ~KL~~EN~eL~eKLKsLIEQYElREe---hf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~K 447 (565)
.+.+---.+|..|-+.++-|||.--. ++.+++.++..+...--+|-+.|..|.+.-++.++-+.-
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444455689999999999986543 444577887777777778889999999999888866643
No 149
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=55.71 E-value=3.3e+02 Score=31.23 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy825 332 CRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL 411 (565)
Q Consensus 332 CRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~ 411 (565)
=++||...+.|.+|.+. .+--..--+.+.++|-.-|.+|..-|......-..-..+-..|..-++++..=-+.....+.
T Consensus 86 E~~l~~Kl~eLE~e~k~-d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~ 164 (508)
T PF00901_consen 86 EQGLQRKLKELEDEQKE-DEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLD 164 (508)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766653 22223334577888999999998877544332111111122345555555544444344443
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH
Q psy825 412 DYKAKYLEMQKTENGLRKQ-----ISMYGEKYDEFQQTLSR-SNEIFAGFKSEMESMSSKI 466 (565)
Q Consensus 412 Klq~Qv~~L~etE~eLR~Q-----LniY~EKFeEFQDTL~K-SNEvF~TFKkEMEKMSKKi 466 (565)
. +...++.|..+|.+ +..|..||+.+.+++.- +.-+-..-=+||-.|+--+
T Consensus 165 ~----L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeV 221 (508)
T PF00901_consen 165 R----LARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEV 221 (508)
T ss_pred H----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHH
Confidence 3 22334445544443 78899999988777653 3345555556666665544
No 150
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=55.62 E-value=1.5e+02 Score=26.19 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 298 KQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENL 347 (565)
Q Consensus 298 k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk 347 (565)
..++..+..|..++..|-.+|.++..=-.+||..|+|+-+......+.-.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777778888888888888999999999888877766544
No 151
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=55.38 E-value=2.3e+02 Score=28.47 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Q psy825 291 NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQ 338 (565)
Q Consensus 291 Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKq 338 (565)
..+.+..+.....+.-+++.....-..+.| +|.+++++|+|+=+.
T Consensus 100 ~~~e~~RK~~ke~~~k~~k~~~~a~~~leK---AK~~Y~~~c~e~Eka 144 (234)
T cd07652 100 KTVEKSRKSIKETGKRAEKKVQDAEAAAEK---AKARYDSLADDLERV 144 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 334444443444444456666666666655 699999999999544
No 152
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.24 E-value=2.7e+02 Score=29.20 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy825 449 NEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCR 506 (565)
Q Consensus 449 NEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~k 506 (565)
.+-+..+|.++......+..+.++...++...+..+..|-++.+++.....++..+.+
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666555555555555555555555555555544444444443
No 153
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.50 E-value=1.5e+02 Score=25.87 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN---EKTKAESELITTCRQL 508 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE---ER~k~~kEle~l~kKi 508 (565)
....+.++.|...|.+-+ .+...=.++-.+-...+.|-.+...|+.+.-...+.|-.+.. ++..+..+...+..++
T Consensus 5 k~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH
Confidence 344556777777777666 333344556666666777777777777776666666665443 5677888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy825 509 AALLKLCRTLQTERAEMLA 527 (565)
Q Consensus 509 eKLE~LCRALQ~ER~~L~~ 527 (565)
..|+.-...+..+...+..
T Consensus 84 ~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 84 KELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877654
No 154
>KOG0239|consensus
Probab=53.67 E-value=4.4e+02 Score=31.09 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy825 437 KYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCR 516 (565)
Q Consensus 437 KFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCR 516 (565)
.|..++..+.-.-.+..+-+++ +..|-.+...|+..+-..+..+..+..+-+..... ...++..|..++.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~-------i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~L~~~~~ 290 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKK-------IQALQQELEELKAELKELNDQVSLLTREVQEALKE---SNTLQSDLESLEE 290 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444444444444444444444 44555555555555555555555555544433333 3333666666666
Q ss_pred HHH------HHHHHHHHHHhhcCCc
Q psy825 517 TLQ------TERAEMLAKLNGAGGY 535 (565)
Q Consensus 517 ALQ------~ER~~L~~kLk~~~g~ 535 (565)
.|. .+|..|++.|.+..|-
T Consensus 291 ~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 291 NLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666 8999999999888873
No 155
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.65 E-value=1.2e+02 Score=28.46 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=56.8
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q psy825 264 QMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIR 343 (565)
Q Consensus 264 qsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LK 343 (565)
+-|.+++.|--+.+. .--|..++..++.+++++.......+.|+.|.......+.+....-..|+.=|+-+.+.++...
T Consensus 4 ~~l~~~~~Pp~~~~~-~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 4 RRLARLPFPPQKRED-SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred hhCCCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444222 3346788888889999999888888899999888888888777777777777777766666444
Q ss_pred H
Q psy825 344 E 344 (565)
Q Consensus 344 E 344 (565)
.
T Consensus 83 ~ 83 (160)
T PF13094_consen 83 K 83 (160)
T ss_pred h
Confidence 3
No 156
>KOG0804|consensus
Probab=53.55 E-value=3.9e+02 Score=30.52 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKS----EMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESE 500 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKk----EMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kE 500 (565)
.+|..|=..|..+-.+.-.+=..|+++-. -++ =|.+..-+++++.+|....+ ..|..|+ +....|..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~-~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~---knq~vw~~- 417 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEA-EKKIVERKLQQLQTKLKKCQKELKEER----EENKKLI---KNQDVWRG- 417 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---hhHHHHHH-
Confidence 35566666666666655443333333322 222 22233444455555554444 2333333 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 501 LITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 501 le~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
.+.+..+++...|++++.+=+.|..+|++.
T Consensus 418 --kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 418 --KLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455666777777777777777777664
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.87 E-value=4.8e+02 Score=31.36 Aligned_cols=121 Identities=14% Similarity=0.233 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN 492 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE 492 (565)
+..++..+...-..|...|..+.+..+.++.-|.-+...+..++.+++-..+....+|-+....+..++.....+...-.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 66777777777788889999999999999999999999999999999988888888999999988888888888877777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 493 EKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 493 ER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|-..+...+..|...+++=..+|.-+-+.-..|..+|....
T Consensus 674 E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 77777777777777776666666665555556666666554
No 158
>KOG3647|consensus
Probab=52.55 E-value=1.2e+02 Score=32.66 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYK----AKYLEMQKTENGLRKQISMYGEKYD 439 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq----~Qv~~L~etE~eLR~QLniY~EKFe 439 (565)
++.+|..|+.+++..++.-.-...+-..|-.|+.-=--.||.--+.|+.|+ .-..++-..|.+|+.+-..|..+|.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999888776655222233333566666554444554444444433 2245677899999999999999987
Q ss_pred H
Q psy825 440 E 440 (565)
Q Consensus 440 E 440 (565)
.
T Consensus 190 n 190 (338)
T KOG3647|consen 190 N 190 (338)
T ss_pred h
Confidence 4
No 159
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.50 E-value=3.4e+02 Score=29.51 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWE 481 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E 481 (565)
+...+..+...|+.|-.||......|...++.|+...+.|..--.-+..++..+.+|=-+....|..-+
T Consensus 250 i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 250 ISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667778888888888888888888888888888887777777777777777666666666443
No 160
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=52.08 E-value=1.1e+02 Score=26.35 Aligned_cols=61 Identities=25% Similarity=0.229 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 460 ESMSSKINKLEKETATWKQRWEKS--------HEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQT 520 (565)
Q Consensus 460 EKMSKKiKKLEKEn~~wKrK~E~s--------NkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ 520 (565)
-.....|.+|.|||-.||-|.=-. +..+-++..+...+.-++..+++.++.+..+.+.++.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999998774332 3333455666666777777777777777776665543
No 161
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.62 E-value=2.5e+02 Score=31.99 Aligned_cols=93 Identities=14% Similarity=0.284 Sum_probs=59.3
Q ss_pred HHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q psy825 263 LQMFN-DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKA 341 (565)
Q Consensus 263 mqsLn-~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~ 341 (565)
|++|. .-.||.+=|.+|.-++.++..++..+..++..+...-+.|++.-..+-.-.+ ..|+.--.||+.+..+
T Consensus 47 ~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~------~av~~~~~~~~~~~~q 120 (472)
T TIGR03752 47 LKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ------QAVQSETQELTKEIEQ 120 (472)
T ss_pred hHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHHhhhHHHHHHHHH
Confidence 56664 5679999999999888888888888888777777666666544333333332 3344444666666555
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy825 342 IREENLQKFREEEEKRKNVSVKLENTLSEISNQVQ 376 (565)
Q Consensus 342 LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qME 376 (565)
++++-. +.+..|.+++.+++
T Consensus 121 l~~~~~---------------~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 121 LKSERQ---------------QLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHh
Confidence 554422 35566666666664
No 162
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=50.19 E-value=45 Score=28.75 Aligned_cols=48 Identities=25% Similarity=0.375 Sum_probs=38.4
Q ss_pred hhhhccHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy825 384 KLRGDNLDMAKKFRELLIQYD-EKEQE--LLDYKAKYLEMQKTENGLRKQI 431 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYE-lREeh--f~Klq~Qv~~L~etE~eLR~QL 431 (565)
.+..|+.+|..+|+..-+.|+ +++.+ +..++.++.....+|.-|+.|-
T Consensus 7 ~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QA 57 (69)
T PF08912_consen 7 NLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQA 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998 55555 6668888877788888888773
No 163
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.04 E-value=32 Score=36.12 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=62.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTE 521 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~E 521 (565)
...|...+.-+..-...|......+..|+.....++..|+. ...++..+..++.....++++-..|...|..|
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~-------~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE-------AQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 35666666666677777777777777777777777777776 34567777788889999999999999999999
Q ss_pred HHHHHHHHhh
Q psy825 522 RAEMLAKLNG 531 (565)
Q Consensus 522 R~~L~~kLk~ 531 (565)
|..+...+..
T Consensus 293 ~~RW~~~~~~ 302 (344)
T PF12777_consen 293 KERWSEQIEE 302 (344)
T ss_dssp HHCCHCHHHH
T ss_pred hhhHHHHHHH
Confidence 9854444333
No 164
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=49.90 E-value=3.4e+02 Score=28.79 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy825 448 SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALL 512 (565)
Q Consensus 448 SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE 512 (565)
.--.-..-+.||+.+-..+++.|++...|+.+...+-.-|..+=.+++++.+-+.-+.-++.++.
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344555789999999999999999999999999988899888898888888887777777664
No 165
>KOG4673|consensus
Probab=49.73 E-value=5.5e+02 Score=31.09 Aligned_cols=59 Identities=20% Similarity=0.139 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 465 KiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
..--|+-|+..|....+..-.-+.+.-.+......+++.+...+.+|+-+||.+...-+
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~ 763 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHK 763 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666776666666655556666667777788888899999999999987655443
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=49.04 E-value=2.2e+02 Score=29.19 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy825 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYS 536 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s 536 (565)
.+|+++.-.+..-......--.-.+.+..-.-.+..||....++|.....-+..|+++++.+..+|+.....+...-| -
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e-e 89 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE-E 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred hhhhhh
Q psy825 537 YLILSY 542 (565)
Q Consensus 537 ~~~~~~ 542 (565)
|.++.+
T Consensus 90 y~~Lk~ 95 (230)
T PF10146_consen 90 YKPLKD 95 (230)
T ss_pred HHHHHH
No 167
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.81 E-value=79 Score=25.48 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825 292 ILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE 334 (565)
Q Consensus 292 rlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE 334 (565)
.+..++..++++.+++..+.+.++.+....-.-.+-+|.++|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444455555555555555555555555443356677777774
No 168
>KOG0978|consensus
Probab=48.50 E-value=5.5e+02 Score=30.71 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNE 493 (565)
Q Consensus 459 MEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEE 493 (565)
|+...++.-.+.+....++.+-+.+++.|-++...
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~ 588 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQ 588 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333333
No 169
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.39 E-value=4.5e+02 Score=29.65 Aligned_cols=184 Identities=19% Similarity=0.240 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 299 QNEKQIALLQNEKEILTLENSKQELTREKLENLCRE---LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 299 ~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE---LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qM 375 (565)
.++..+.+...+...|..++.-+-.+..+|.....+ ||.+....++ ..+..+. .+......++..|..+...|
T Consensus 215 ~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~---~~l~~~~-~~~~~~~~~~~~l~s~~~EL 290 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE---SKLEEEA-EAKEKSSELQSSLASAKKEL 290 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhH-HhhhhhhhHHHHHHHHHHHH
Confidence 344444444455555555554444455566533333 3444333333 1111111 23344445566666666666
Q ss_pred hhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy825 376 QESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF 455 (565)
Q Consensus 376 EE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TF 455 (565)
++-...-.+...+-..|+....+|-..-+. .+.-+..+.+.+......+......-..+..=|.-.-.-....
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~-------~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~ 363 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEK-------EKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA 363 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch
Confidence 555444333333444455555555432221 1111222222222222222222222222222222222233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNE 493 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEE 493 (565)
+..|..|...+..+-.|....+..-+.+..-+..+-.+
T Consensus 364 k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E 401 (522)
T PF05701_consen 364 KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEE 401 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888777777777766555544433333333
No 170
>KOG4673|consensus
Probab=47.49 E-value=5.9e+02 Score=30.83 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIF----AGFKSEMESMSSKINKLEKETATWKQ 478 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF----~TFKkEMEKMSKKiKKLEKEn~~wKr 478 (565)
++|++-.+|+....++..+|.+.-..- +-||.|+..+-.++.--|--+..+-.
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888999999999999988876544 45888888887777766666665543
No 171
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.49 E-value=3.5e+02 Score=29.17 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKT--E---NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK 465 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~et--E---~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKK 465 (565)
.|+.|||.-.....-||-.+..|+.|+..|.+- | .-..+||++-. ..|.
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKE--------------------------ARkE 125 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKE--------------------------ARKE 125 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHH
Confidence 488888888888888888888888888887652 1 13556665432 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 466 INKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTE 521 (565)
Q Consensus 466 iKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~E 521 (565)
||+|-.=..++|.- | ++.-.-..+-+.-...|..+||+|.+.|.--
T Consensus 126 IkQLkQvieTmrss-------L---~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 126 IKQLKQVIETMRSS-------L---AEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred HHHHHHHHHHHHhh-------h---chhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 34443333444433 2 2233344556667888999999999988643
No 172
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.43 E-value=2.4e+02 Score=26.30 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEM 420 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L 420 (565)
.++.|..++..|+........|..+...|+.-+-+|-.|-..|.+++..++++|..+
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665667777888899999999999999999988888888643
No 173
>PRK09039 hypothetical protein; Validated
Probab=46.63 E-value=3.9e+02 Score=28.54 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHhhhHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLD-------YKAKYLEMQKTENGLRKQISMYGEKYD---EFQQTLSRSNEIFAGFKSEME 460 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~K-------lq~Qv~~L~etE~eLR~QLniY~EKFe---EFQDTL~KSNEvF~TFKkEME 460 (565)
.|..++..|.+.-.++...... ++.++..+...-..|..++. .++. +.+..+.....-...-+.+..
T Consensus 57 ~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 57 RLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566555555444433 45555555555556666544 4554 677777777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy825 461 SMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLK-LCRTLQTERAEMLAKLN 530 (565)
Q Consensus 461 KMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~-LCRALQ~ER~~L~~kLk 530 (565)
...-.+..|-.+...|+........+|-..-..-......++.+...++.+-. -...|..=|.++...|+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888888888888887777666655444444444455555444443321 14445555666655555
No 174
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.92 E-value=1.9e+02 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy825 448 SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELI 502 (565)
Q Consensus 448 SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle 502 (565)
|.++|...-.=+...--.|.-|.-|+..++.+........-.+..+...+..+..
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5677877777777888888888888888887766555433334444443333333
No 175
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.84 E-value=3.1e+02 Score=27.13 Aligned_cols=143 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNL-DMAKKFRELLIQYDEKEQELLD-YKAKYLEMQKTENGLRKQISMYGEKYDEF 441 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~-eL~eKLKsLIEQYElREehf~K-lq~Qv~~L~etE~eLR~QLniY~EKFeEF 441 (565)
|..++..|...++.-+.....+...-. ++...|..|...++.+-..+.. ...-...+......|..==.-|-..+.++
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALL 512 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE 512 (565)
.+.-.++|-+-.. +++++..++.+...+...-+..|..+-..+-.. +..|..++...-..++.||
T Consensus 138 e~~~~~~~~~~~k---e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~---~~~~~~~~~~~~~~~Q~lE 202 (236)
T cd07651 138 NSYTLQSQLTWGK---ELEKNNAKLNKAQSSINSSRRDYQNAVKALREL---NEIWNREWKAALDDFQDLE 202 (236)
T ss_pred HHHHHHHcccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
No 176
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=45.78 E-value=2.5e+02 Score=30.96 Aligned_cols=85 Identities=27% Similarity=0.427 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH---------HHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLD-----YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFA---------GFK 456 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~K-----lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~---------TFK 456 (565)
.|-.||.+|.++|+.=+..+.+ -..++..+...-..|+.=...| ..|...++.|.-..++.. -++
T Consensus 4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~-~~~~~~~~~l~~a~~~l~~~~D~em~ema~ 82 (363)
T COG0216 4 SLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKY-REYKKAQEDLEDAKEMLAEEKDPEMREMAE 82 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4778999999999988877765 3455666666655665555544 345555555555555554 366
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy825 457 SEMESMSSKINKLEKETATW 476 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~w 476 (565)
.|+.....++-.||.+...|
T Consensus 83 ~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 83 EEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777777777777766554
No 177
>PRK05560 DNA gyrase subunit A; Validated
Probab=45.61 E-value=6e+02 Score=30.36 Aligned_cols=65 Identities=9% Similarity=0.164 Sum_probs=51.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 403 YDEKEQELLD-YKAKYLEMQKTEN-GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 403 YElREehf~K-lq~Qv~~L~etE~-eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
|.+-+.|++- +.-++..|+..|. .|+.++..+...+++++..|+.-+.+..-.++|+....++--
T Consensus 409 f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 409 FGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred cCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 4444555555 5566777877765 799999999999999999999999999999999988777654
No 178
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.15 E-value=3.2e+02 Score=27.03 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=32.4
Q ss_pred HHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 369 SEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD 412 (565)
Q Consensus 369 ~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K 412 (565)
.-+-.+|++-...|..|..+...|+.-|..+-+.-+.+|..|..
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777778888888888888888887777777665543
No 179
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.61 E-value=3.4e+02 Score=27.23 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH--
Q psy825 335 LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD-- 412 (565)
Q Consensus 335 LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K-- 412 (565)
-+...-.|++.+.....+-+..|.++.+.|..-+++++.++-+.. .+...|...|..|-+=+..++.+-..
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~-------k~~~~l~~eLq~l~~~~~~k~~qe~eI~ 88 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKE-------KEQAKLQQELQALKEFRRLKEQQEREIQ 88 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455666666677777778899999999999999999886544 35667888888888777777665444
Q ss_pred -HHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 -YKAKYLEM--QKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 413 -lq~Qv~~L--~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
|+..+..+ ...+..-+.+.....+|.. |+.=+.- ..+-..=+.--..+.+++.-||..... ......-.
T Consensus 89 ~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~-LEke~~e-~~i~~l~e~a~~el~~k~~ale~~A~~------~l~e~~~~ 160 (206)
T PF14988_consen 89 TLEEELEKMRAEHAEKLQEAESQFLQEKAR-LEKEASE-LKILQLGERAHKELKKKAQALELAAKK------SLDEFTRS 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhHHHhHHHhhHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 44433222 1122222333333333322 0000000 000000000011112222222221111 11112223
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 490 MSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLA 527 (565)
Q Consensus 490 MaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~ 527 (565)
+..|...+.+++-.+-.....|++....|..+..+|..
T Consensus 161 i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 161 IKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888888777654
No 180
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.31 E-value=3.6e+02 Score=27.43 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=39.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q psy825 384 KLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSN 449 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSN 449 (565)
.+..+|..|..++-.|-++-..=-.+++.++.+...|...=..|+.||-.|..=+-+-...|+-.+
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444455567777777766777888888887665555544444433
No 181
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.57 E-value=72 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy825 467 NKLEKETATWKQRWEKSHE 485 (565)
Q Consensus 467 KKLEKEn~~wKrK~E~sNk 485 (565)
|+||++-..|++-|+..-.
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~ 19 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKA 19 (45)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3567777777777776433
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.44 E-value=5.2e+02 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEK 311 (565)
Q Consensus 279 L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEK 311 (565)
+...|..+..+.+.+.+++..++.....+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~el 191 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRL 191 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444444444444444333333333
No 183
>KOG4593|consensus
Probab=42.89 E-value=6.7e+02 Score=30.10 Aligned_cols=231 Identities=19% Similarity=0.177 Sum_probs=105.6
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH----------HHHHHHHHHHHHHHhhhccccchh
Q psy825 316 LENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVS----------VKLENTLSEISNQVQESNNKTMKL 385 (565)
Q Consensus 316 sEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELs----------eKFQ~tL~DIq~qMEE~~~~n~KL 385 (565)
..+.....+..-+...|-.||.++-...+.+.....-+.+.+.++. .+|.++|..++.+.--+..+-..+
T Consensus 105 ~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~ 184 (716)
T KOG4593|consen 105 KLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRL 184 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455667777777777777777777766666666555543 356666776666532222110000
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy825 386 RGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK 465 (565)
Q Consensus 386 ~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKK 465 (565)
.-.-..+...|...+.|.+. ...++......=.++-.....-.+=|.+ |.-|++ -.+....|..--..
T Consensus 185 ~s~l~~~eke~~~~~~ql~~-------~~q~~~~~~~~l~e~~~~~qq~a~~~~q----l~~~~e-le~i~~~~~dqlqe 252 (716)
T KOG4593|consen 185 HSELQNEEKELDRQHKQLQE-------ENQKIQELQASLEERADHEQQNAELEQQ----LSLSEE-LEAINKNMKDQLQE 252 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHhhhH-HHHHHHHHHHHHHH
Confidence 00011111222222211111 1111111111111111111111111111 111111 12233344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCcchh----
Q psy825 466 INKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCR---TLQTERAEMLAKLNGAGGYSYL---- 538 (565)
Q Consensus 466 iKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCR---ALQ~ER~~L~~kLk~~~g~s~~---- 538 (565)
+..|+.....|+..... +-++-.--.-|..|++.++.++.+|+.|.- .|+-|--.|..+|..-.|+...
T Consensus 253 l~~l~~a~~q~~ee~~~----~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~ 328 (716)
T KOG4593|consen 253 LEELERALSQLREELAT----LRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSL 328 (716)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 56677777788765431 112222223445556666666666665543 3555656677777766654322
Q ss_pred --hhhhhh-------hhccccCCCCcccCCCCc
Q psy825 539 --ILSYMK-------KFDRRNCNNGGLMEPKSK 562 (565)
Q Consensus 539 --~~~~~~-------~~~~~~~n~~~~~~~~~~ 562 (565)
|.-+|. ..--.+|++.++..|-+-
T Consensus 329 ~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~ 361 (716)
T KOG4593|consen 329 RTPEDLMEKLVNEQSRNANLKNKNSTVTSPARG 361 (716)
T ss_pred CCHHHHHHHHHHHHHHHhhhccccccccCcccc
Confidence 111222 233467888888888653
No 184
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.79 E-value=1.4e+02 Score=24.70 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825 289 DFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE 334 (565)
Q Consensus 289 E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE 334 (565)
..+.+..++...+.+.++++.+.+.|+.|.+.-. ..+.+|.++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~-~~~rIe~~Ar~ 69 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS-RHERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 4567888888888888889999999999988544 37778888884
No 185
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=41.59 E-value=1.1e+02 Score=34.28 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
..|...-..+.+.++.|.++...|..+.+.. .+++..|-..|+.+..+||.+..-|.+.|-..
T Consensus 418 g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~~-----------------e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 418 GIITGRTDSLNKQIKSLDKDIKSLDKRLEAA-----------------EERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred ceeeccccchhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456667888999999999999999987762 23678899999999999999999999888654
No 186
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.58 E-value=3.6e+02 Score=26.59 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH---HHHHhHHH
Q psy825 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIRE---ENLQKFRE 352 (565)
Q Consensus 276 le~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKE---Enk~r~~E 352 (565)
...+..++..|.+++..+...+..++.+.......+..- .|+...+.-...|+.-+.+|+.+...+.. +.....++
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345566666666666666666666666666555444222 34444444444455555555555443333 22333333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q psy825 353 EEEKRKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 353 EEeKRkELseKFQ~tL~DIq~qM 375 (565)
+-..=.+....|-.-|.-|..-+
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333444555665565555554
No 187
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.37 E-value=1.7e+02 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 454 GFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 454 TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
.-|.|||.|.+.+.+||--...+-
T Consensus 122 ~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 122 QHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999997665543
No 188
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=41.05 E-value=2.9e+02 Score=26.87 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhccc-cchhhhccHHHHHHHHHHHHHH
Q psy825 352 EEEEKRKNVSVKLENTLSEISNQVQESNNK-TMKLRGDNLDMAKKFRELLIQY 403 (565)
Q Consensus 352 EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-n~KL~~EN~eL~eKLKsLIEQY 403 (565)
+-+++=.++.++||.++..+-..++.-... ...++.-+..|+..||.+++.+
T Consensus 85 ev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~ 137 (155)
T PF07464_consen 85 EVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDA 137 (155)
T ss_dssp HHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444455556665555554443332222 2234455667888888887764
No 189
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.85 E-value=3.9e+02 Score=26.83 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy825 423 TENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM----------SSKINKLEKETATWKQRWEKSH-EAYLEMS 491 (565)
Q Consensus 423 tE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKM----------SKKiKKLEKEn~~wKrK~E~sN-kaLleMa 491 (565)
.+..=..-+..|..+...|++.|..--..+...+.++..| -..|..|+++.......|.... .+=..+.
T Consensus 34 i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl 113 (206)
T PF14988_consen 34 IQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFL 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556678888888877777777777777777655 4667777777766665544433 3446677
Q ss_pred HHHHHhHHHH-HH------------HHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 492 NEKTKAESEL-IT------------TCR--------QLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 492 EER~k~~kEl-e~------------l~k--------KieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
.|+..+.+++ +. +.. -...|-..|+++..|=..|...|.-
T Consensus 114 ~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~ 174 (206)
T PF14988_consen 114 QEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQ 174 (206)
T ss_pred HHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666 21 111 2455777888888886666666543
No 190
>KOG0971|consensus
Probab=40.29 E-value=8.4e+02 Score=30.54 Aligned_cols=275 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCCCCcccCCCCCcccccCCCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q psy825 234 TSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEK----------Q 303 (565)
Q Consensus 234 ~~~~d~~~~~~~~~~~~~~iKe~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qK----------k 303 (565)
.+||-+..+..+-..+..+. .+....|--.+..| .||+++|.-|-+|=..-++.+.+=..+++. +
T Consensus 203 P~~~~P~~Tta~a~v~l~sa--skte~eLr~QvrdL---tEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q 277 (1243)
T KOG0971|consen 203 PIIPTPVLTTAGAVVPLPSA--SKTEEELRAQVRDL---TEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ 277 (1243)
T ss_pred CCCCCCCCCCccccCCCCcc--ccchHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy825 304 IALLQNEKEILTLENSKQELTREKLENL------CRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQE 377 (565)
Q Consensus 304 ~dQLqKEKD~lqsEl~KaIlaKsKLEsL------CRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE 377 (565)
+.-||++....+-|..-++.+++++-.+ .=|+-.--|.+-||-....+.+-+--++=.+-+..-|.=+.+-|++
T Consensus 278 qa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 278 QADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcccc--------chhhhccHHHH---HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Q psy825 378 SNNKT--------MKLRGDNLDMA---KKFRELLIQYDEKEQELLD------------------YKAKYLEMQKTENGLR 428 (565)
Q Consensus 378 ~~~~n--------~KL~~EN~eL~---eKLKsLIEQYElREehf~K------------------lq~Qv~~L~etE~eLR 428 (565)
.+... -+|.+.|..|+ -||.++..+--.--+.+++ |.+++..+--+=..|+
T Consensus 358 kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 358 KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH------------------------------HHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 429 KQISMY------------------------------GEKYDEFQQTLSRSN-EIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 429 ~QLniY------------------------------~EKFeEFQDTL~KSN-EvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
+|+..- .+-..++++-|.-|| ++-.-.+.||+..+..++-|+++...-.
T Consensus 438 EQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq 517 (1243)
T KOG0971|consen 438 EQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ 517 (1243)
T ss_pred HHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 478 QRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 478 rK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~ 513 (565)
.-.-.-+++|+.+-+--..+..++..+..+...++.
T Consensus 518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
No 191
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.39 E-value=4.5e+02 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIF 452 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF 452 (565)
+..++..+...-..++.++..........+..+.....+|
T Consensus 149 l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~ 188 (423)
T TIGR01843 149 ILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLK 188 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433333
No 192
>KOG3650|consensus
Probab=39.22 E-value=76 Score=29.51 Aligned_cols=38 Identities=29% Similarity=0.557 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELL 400 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLI 400 (565)
-+|++|.|++.+++.-.++|.+|+.||.-|..=+..|+
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 38999999999999999999999999987765555544
No 193
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=39.22 E-value=4.4e+02 Score=26.95 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHH
Q psy825 424 ENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE---MSNEKTKAESE 500 (565)
Q Consensus 424 E~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle---MaEER~k~~kE 500 (565)
-.+|=+-|.-|.+.|+..-.+|..-++.+.+-.+=-++|..-.+.|+.=|......-+.+++.+-. +++.-.....+
T Consensus 101 d~~l~esl~~~i~~~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 101 DATLMQSLGNGINNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888889999999999999998877777777777777888888888877777765543 45666677788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy825 501 LITTCRQLAALLKLCRTL 518 (565)
Q Consensus 501 le~l~kKieKLE~LCRAL 518 (565)
+..+.+.+..|.+....|
T Consensus 181 ~~kLa~NL~sLN~VYg~M 198 (202)
T TIGR03513 181 MEKMAANLTSLNEVYGGM 198 (202)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776544
No 194
>KOG2077|consensus
Probab=37.97 E-value=2.5e+02 Score=33.06 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENL 347 (565)
Q Consensus 276 le~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk 347 (565)
++.|..--++||.--.-|.-=--.+=-++|+|.-|++.|+.|+--.-.++.|||.=-|||-.+.|+++-|..
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888764455444445566889999999999999999999999999988888888887775554
No 195
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.73 E-value=5.7e+02 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy825 420 MQKTENGLRKQISMYGEKYDEFQQTLSRS 448 (565)
Q Consensus 420 L~etE~eLR~QLniY~EKFeEFQDTL~KS 448 (565)
+.+.+.+|......|++.+-.+.+.-.+=
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi 284 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREI 284 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 45567777777777888877776554433
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.44 E-value=4.5e+02 Score=26.51 Aligned_cols=78 Identities=13% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 408 QELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAY 487 (565)
Q Consensus 408 ehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL 487 (565)
..+..++.++..+...=..++.+++ ..-.+.++.+..|+..+...+.+-..+...+..+..++..+....+.....+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy825 488 L 488 (565)
Q Consensus 488 l 488 (565)
.
T Consensus 170 ~ 170 (206)
T PRK10884 170 I 170 (206)
T ss_pred H
No 197
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.69 E-value=2.3e+02 Score=24.80 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLS 446 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~ 446 (565)
.|-+|+-.|=-+.-..|.-++.|...+.+....=..++.||..-.+||..++.+.-
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 35556666655555566667778888888888888899999999999999986654
No 198
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.38 E-value=7.6e+02 Score=28.90 Aligned_cols=14 Identities=50% Similarity=0.660 Sum_probs=6.4
Q ss_pred HHhHHHHHHHHHHH
Q psy825 325 REKLENLCRELQKQ 338 (565)
Q Consensus 325 KsKLEsLCRELQKq 338 (565)
+..++.|-..||-+
T Consensus 93 ~kElE~L~~qlqaq 106 (617)
T PF15070_consen 93 RKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444554444443
No 199
>KOG0018|consensus
Probab=36.36 E-value=9.9e+02 Score=30.20 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q psy825 284 SELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340 (565)
Q Consensus 284 sELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK 340 (565)
.-|....+-+..++.+..+...+...|..+..++.. ...-++-.+-|+||..-.
T Consensus 686 ~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~---~~~p~i~~i~r~l~~~e~ 739 (1141)
T KOG0018|consen 686 HGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID---EFGPEISEIKRKLQNREG 739 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCchHHHHHHHHHHHHH
Confidence 334444455555555555555666666666555554 122233344455554433
No 200
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.07 E-value=2.3e+02 Score=26.71 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy825 417 YLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL-EMSNEKT 495 (565)
Q Consensus 417 v~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl-eMaEER~ 495 (565)
+..|...=..|+.||.........+...|+.-+..-+ .+.|...|..|+.++..+..|.+....+-. --.+++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~ 148 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE 148 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 4444444455666666666666655544443322221 134444555555555555444433221110 1234544
Q ss_pred HhHHHHHHHHHHHH
Q psy825 496 KAESELITTCRQLA 509 (565)
Q Consensus 496 k~~kEle~l~kKie 509 (565)
.....+..+.+..-
T Consensus 149 ~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 149 KLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 201
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.92 E-value=8.2e+02 Score=29.12 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 400 LIQYDEKEQELLD-YKAKYLEMQKTEN-GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 400 IEQYElREehf~K-lq~Qv~~L~etE~-eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
++.|.+-+.|++- +.-++..|+..|. .|+.++..-.+.+.+++..|+.-..++.-.+.|+....++-.
T Consensus 403 ~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg 472 (738)
T TIGR01061 403 IDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFA 472 (738)
T ss_pred HHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 3334444556655 5555666776665 688888888999999999999999999999999888777654
No 202
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.44 E-value=90 Score=28.91 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT 495 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~ 495 (565)
-.||.++.+++..||-||..||=|.|- |++|..|-+
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKiev----LLDMLtett 106 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEV----LLDMLAETT 106 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 358999999999999999999999874 788887754
No 203
>KOG3859|consensus
Probab=35.03 E-value=5.4e+02 Score=28.33 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 420 MQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRW 480 (565)
Q Consensus 420 L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~ 480 (565)
..+.|.+|+.-=.....||+.+. ..+..|-.++.-+.+.||-|...+.+|-
T Consensus 350 vkekE~elke~Ekel~~kf~~lk----------r~h~eEk~kle~~rr~Leee~~~f~~rk 400 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLK----------RLHQEEKKKLEEKRKQLEEEVNAFQRRK 400 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655555567777654 3455677777788888888888887764
No 204
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.85 E-value=7.7e+02 Score=28.51 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEK---TKAESELITTCRQL 508 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER---~k~~kEle~l~kKi 508 (565)
..|++++-+++..-..=.++-.....|+..+.... ..+...++.+.......|-++-..- .....++..++...
T Consensus 309 ~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~---~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~ 385 (754)
T TIGR01005 309 TTMLANHPRVVAAKSSLADLDAQIRSELQKITKSL---LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDA 385 (754)
T ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 35777777777776666666666666666654432 3333434433333333333221111 12345677777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy825 509 AALLKLCRTLQTERAEML 526 (565)
Q Consensus 509 eKLE~LCRALQ~ER~~L~ 526 (565)
+-.+.+...|...+.+..
T Consensus 386 ~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 386 AAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766654
No 205
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.43 E-value=8.8e+02 Score=29.05 Aligned_cols=65 Identities=11% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 403 YDEKEQELLD-YKAKYLEMQKTEN-GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 403 YElREehf~K-lq~Qv~~L~etE~-eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
|..-+.|++- +.-++..|+..|. .|+.++....+.+++++..|+.-+.+..-.++||....++--
T Consensus 406 ~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 406 FSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFG 472 (800)
T ss_pred cCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhC
Confidence 3444445554 4556667777665 789999999999999999999999999999999988776553
No 206
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.04 E-value=5.3e+02 Score=26.38 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
.+|..+|.-|-+.+..-+..|..|-+.-.-.-.+....--.-..|+.....+..-....-......+++|..+..++..+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 505 CRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 505 ~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
...+.+|..-...--.|-..|...|..+
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 207
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.98 E-value=4.5e+02 Score=25.58 Aligned_cols=88 Identities=24% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc----cchhh
Q psy825 314 LTLENSKQELTREKLENLCRELQKQNK---AIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK----TMKLR 386 (565)
Q Consensus 314 lqsEl~KaIlaKsKLEsLCRELQKqNK---~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~----n~KL~ 386 (565)
+.+=.-+.|.+-.=|+++|-.-+.++- .+++++.+...+. +..+++-.+|..-|-.+...+...... ...|.
T Consensus 24 v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~-~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 24 VKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQY-EREKELRKQAEEELLELEDQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666677777777776665544 4444444333222 122233334555555554444332211 23344
Q ss_pred hccHHHHHHHHHHHHH
Q psy825 387 GDNLDMAKKFRELLIQ 402 (565)
Q Consensus 387 ~EN~eL~eKLKsLIEQ 402 (565)
.+|-.|..+++.+.+|
T Consensus 103 ~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 103 EENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4555555555555543
No 208
>KOG4196|consensus
Probab=33.76 E-value=4.5e+02 Score=25.49 Aligned_cols=58 Identities=24% Similarity=0.211 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q psy825 310 EKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEI 371 (565)
Q Consensus 310 EKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DI 371 (565)
.+-=+++=+.|-|.-+.=||.==.+|+.+...|++|+-+..+|-. .+-.+|+....-+
T Consensus 61 NRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~d----a~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 61 NRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELD----AYKSKYEALQNSA 118 (135)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Confidence 344456667777777888888888999999999998877655433 3445676666554
No 209
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=33.60 E-value=5.3e+02 Score=26.24 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=49.5
Q ss_pred HHHHHHhhcCCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q psy825 259 TDVMLQMFNDSQTPDEKFKI-----ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCR 333 (565)
Q Consensus 259 ~~~LmqsLn~L~TpEEKle~-----L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCR 333 (565)
...+|..++.++..-+.+.. ++.+..-+.. .+....+.+.--+.+++.+++....++.| +|.+++.+|+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~---~~~~~rK~~~~~~~kl~~el~~~~~el~k---~Kk~Y~~~~~ 140 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIK---DKRKAKKAYQEERQQIDEQYKKLTDEVEK---LKSEYQKLLE 140 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 55666666655543333321 2222222333 33444444555567788899999999887 6999999999
Q ss_pred HHHHHHHHHH
Q psy825 334 ELQKQNKAIR 343 (565)
Q Consensus 334 ELQKqNK~LK 343 (565)
|.......+.
T Consensus 141 e~e~Ar~k~e 150 (237)
T cd07657 141 DYKAAKSKFE 150 (237)
T ss_pred HHHHHHHHHH
Confidence 9988877763
No 210
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=33.49 E-value=3.8e+02 Score=24.54 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 437 KYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL 488 (565)
Q Consensus 437 KFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl 488 (565)
-|..|+-.+.++.-+..+.+.|++.-..-...++.+....+...+..-..|.
T Consensus 54 ~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~ 105 (139)
T PF05615_consen 54 ELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELE 105 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666665555554444
No 211
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.37 E-value=1.1e+03 Score=29.90 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLE 317 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsE 317 (565)
..+|+.|..+.++|-.+...+..++..+..+..+|..+...+-++
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~ 785 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSD 785 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 567777777778887777777777777777777777776555443
No 212
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=33.10 E-value=3.2e+02 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQ 478 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKr 478 (565)
....+.+..|..-..++-..|++-..|=-+|-.-|++|..+|..|+.+...++.
T Consensus 245 ~s~~ek~~~yn~Anr~VAi~cnntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~ 298 (391)
T smart00435 245 GNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKK 298 (391)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999999999999999999999999999999998877665554
No 213
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.96 E-value=5.1e+02 Score=28.44 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=68.2
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSN---EKTKAESELITTCRQL 508 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE---ER~k~~kEle~l~kKi 508 (565)
+...+..+.|...|.+-+ |...=.++-.+-...++|-.+...|+.+.....+.|-.+.. +...+..+...+..++
T Consensus 5 k~ir~n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~ 82 (425)
T PRK05431 5 KLIRENPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEI 82 (425)
T ss_pred HHHHhCHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 344455566666666664 21123455566777777777777777777777776655332 2345677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 509 AALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 509 eKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
..|+.-...+.+++..+...|=..-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 83 KALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999998887775543
No 214
>PF14645 Chibby: Chibby family
Probab=32.85 E-value=1.2e+02 Score=28.00 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 454 GFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT 495 (565)
Q Consensus 454 TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~ 495 (565)
.+-.++..+.++++.|+.||..++-|++- |++|..|-+
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~el----LlDMLtett 105 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIEL----LLDMLTETT 105 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34567888999999999999999999876 666666654
No 215
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.47 E-value=2.5e+02 Score=26.95 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=18.5
Q ss_pred HHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 443 QTLSRSNEIFAGFKS---EMESMSSKINKLEKETATWKQRWE 481 (565)
Q Consensus 443 DTL~KSNEvF~TFKk---EMEKMSKKiKKLEKEn~~wKrK~E 481 (565)
.-|...|....+|+. .++.+.++|..|+.++..++..|+
T Consensus 34 ~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 34 TQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444 455555555555555554444433
No 216
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=31.80 E-value=4.5e+02 Score=24.87 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 389 NLDMAKKFRELLIQYDEKEQELLDYKAK-YLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 389 N~eL~eKLKsLIEQYElREehf~Klq~Q-v~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
|.+....|-.++.|++.=-..+..-... +..|.+.-.-++..-.++..+++.|. ++++.|-+-|+.|.+...
T Consensus 41 ~~~ys~q~~~l~~qw~~D~qk~ke~eEkl~n~~~qqQK~~qq~r~~q~Qrlk~iK-------~l~eqflK~le~le~~~~ 113 (130)
T PF04803_consen 41 NEEYSQQFSTLFQQWEADVQKFKEQEEKLSNIFQQQQKLFQQARIVQNQRLKAIK-------ELHEQFLKSLEDLEKSHD 113 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4456777777777776554444332222 23355555666777777777777665 677777777777755544
No 217
>KOG0957|consensus
Probab=31.67 E-value=3.3e+02 Score=31.66 Aligned_cols=95 Identities=23% Similarity=0.238 Sum_probs=66.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 440 EFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 440 EFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ 519 (565)
+|-.--.+-|..|..|+.-|...-..+-.||+|...+.+-|.. ..++++....--..|......++.|.-++-
T Consensus 428 efi~yy~~rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~-------~~e~~~e~k~~~~~L~~~~~~~~~llgqi~ 500 (707)
T KOG0957|consen 428 EFIEYYTKRNERMSGISSFMQERDSQIIPLEEEQLRLSREYLA-------ETEANQEKKSSQKHLVERFSANEELLGQIL 500 (707)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHhhhHHHHHHhhh
Confidence 4444556789999999999999999999999999888876654 445554444444445555555666555544
Q ss_pred HHHHHHHHHHhhcCCcchhhhh
Q psy825 520 TERAEMLAKLNGAGGYSYLILS 541 (565)
Q Consensus 520 ~ER~~L~~kLk~~~g~s~~~~~ 541 (565)
.--.-|.+-|-+.+|++-.|++
T Consensus 501 ~~i~kl~~pl~e~~pks~~p~~ 522 (707)
T KOG0957|consen 501 TSIEKLHQPLTELGPKSGLPLS 522 (707)
T ss_pred hhHHHhcchhhhcCCccCCcCc
Confidence 4334566677788888888886
No 218
>PRK02119 hypothetical protein; Provisional
Probab=31.30 E-value=3e+02 Score=23.45 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQT 520 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ 520 (565)
.||..|..++-.||--....-.-.+..|..|+ ...++++.|...|+.|..
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~--------------~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALI--------------EQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 36778888888888887777766666666665 455566666666666643
No 219
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.29 E-value=1.8e+02 Score=29.00 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy825 330 NLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQ 376 (565)
Q Consensus 330 sLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qME 376 (565)
.-|.||.++.....++-....++.-..|.+++..-+....+++.++.
T Consensus 117 N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~ 163 (176)
T PF12999_consen 117 NTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLE 163 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777776655555544444443
No 220
>KOG2398|consensus
Probab=31.18 E-value=9.2e+02 Score=28.29 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 363 KLENTLSEISNQVQESNNKTMKLRGDNL-DMAKKFRELLIQYDEKEQELLD-----YKAKYLEMQKTENGLRKQISMYGE 436 (565)
Q Consensus 363 KFQ~tL~DIq~qMEE~~~~n~KL~~EN~-eL~eKLKsLIEQYElREehf~K-----lq~Qv~~L~etE~eLR~QLniY~E 436 (565)
.|...+......++....-...|..++. .+...++-+.+||+.|..-... ...|...-.+....+..-...|..
T Consensus 44 s~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~ 123 (611)
T KOG2398|consen 44 SFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLH 123 (611)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555554455555544 3567777777787777554332 122211112233333333344443
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 437 KYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEA 486 (565)
Q Consensus 437 KFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNka 486 (565)
+-.+.....-++ .++.+|.++.-+++++..+...+.-+++..-+.
T Consensus 124 ~~~e~e~~~~~~-----k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~ 168 (611)
T KOG2398|consen 124 RCQEKESLKEKE-----KRKKELAKAELKIKEAREEYRSLVAKLEKVRKD 168 (611)
T ss_pred HHHhhhhccccc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 348888888888888888777776666654443
No 221
>KOG0243|consensus
Probab=31.13 E-value=1.2e+03 Score=29.43 Aligned_cols=28 Identities=43% Similarity=0.477 Sum_probs=15.6
Q ss_pred hhcccccchhHHH----hHHHHHHHHHhhhhh
Q psy825 107 KKNEVELKSKEEV----KSEVLKEVEKESKKE 134 (565)
Q Consensus 107 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 134 (565)
.++.|-++.-||+ ..+|++.+++-+++.
T Consensus 221 ~kggV~vkGlEEi~V~~A~ei~klLekGs~kR 252 (1041)
T KOG0243|consen 221 GKGGVIVKGLEEIIVTNADEIYKLLEKGSKKR 252 (1041)
T ss_pred CcCcEEEecceeeeecchhHHHHHHHhhhhHh
Confidence 4445555555543 456666666666553
No 222
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.09 E-value=7.2e+02 Score=27.00 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=92.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Q psy825 259 TDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQ 338 (565)
Q Consensus 259 ~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKq 338 (565)
...|.++-.....-..=+..|.+++.|+..|++-|-..+..++-...-+... +--.|+..-|.--.++..-|..||+.
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFPHEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433223344467889999999998877777666554322211111 01145555555557778888899998
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc---cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK---TMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKA 415 (565)
Q Consensus 339 NK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~---n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~ 415 (565)
.+.+-+|--....| |...-.|.+-.-.+++--+..+..+ -+.|+.||--|.++|+.+-+--++--..+.+|+.
T Consensus 149 ~qs~lDEkeEl~~E----RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 149 LQSLLDEKEELVTE----RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776544443 4443344444444554455444444 3678889988899988887766666666666665
Q ss_pred HHH
Q psy825 416 KYL 418 (565)
Q Consensus 416 Qv~ 418 (565)
-+.
T Consensus 225 ~le 227 (319)
T PF09789_consen 225 ALE 227 (319)
T ss_pred HHH
Confidence 443
No 223
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.79 E-value=4.5e+02 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q psy825 284 SELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340 (565)
Q Consensus 284 sELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK 340 (565)
.++-..+..|+..+-..+--.+.|.+++|.|.+=+.---.-..=+..=|+|||...-
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777777555444333334444444566665554
No 224
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.76 E-value=6.7e+02 Score=26.58 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=71.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhccc------c-----chhhhccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy825 356 KRKNVSVKLENTLSEISNQVQESNNK------T-----MKLRGDNLDMAKKFRELLIQYDEK--EQELLDYKAKYLEMQK 422 (565)
Q Consensus 356 KRkELseKFQ~tL~DIq~qMEE~~~~------n-----~KL~~EN~eL~eKLKsLIEQYElR--Eehf~Klq~Qv~~L~e 422 (565)
-=+++.++|+..|...-..++--.-. . ....-.|.-.+.=|++|----+.. -..+..++.++.++..
T Consensus 70 ~GReLA~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~ 149 (290)
T COG4026 70 VGRELAEKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQK 149 (290)
T ss_pred hhHHHHHHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 34578899999998877765422111 0 112224555677777765211111 1123345666666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 423 TENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSH 484 (565)
Q Consensus 423 tE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sN 484 (565)
.-.+|+..|.-...+|.++|+-| .....|...+....++|.-+...|+.+|+..-
T Consensus 150 EkeeL~~eleele~e~ee~~erl-------k~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERL-------KRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 67777777777777777666443 34555555666666666666666666666543
No 225
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.36 E-value=2e+02 Score=23.18 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 282 KYSELYHDFNILSLLSKQNEKQIALLQNEKEIL 314 (565)
Q Consensus 282 KYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~l 314 (565)
.|..+..++..++.++..++...+.|..+.+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666666666666666666
No 226
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.21 E-value=4.3e+02 Score=24.12 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYD 404 (565)
Q Consensus 391 eL~eKLKsLIEQYE 404 (565)
.+..++..++..|-
T Consensus 113 ~i~~~i~~~v~~~a 126 (158)
T PF03938_consen 113 PIQKKINKAVEEYA 126 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666666554
No 227
>KOG4403|consensus
Probab=29.96 E-value=7.6e+02 Score=28.43 Aligned_cols=81 Identities=15% Similarity=0.002 Sum_probs=35.2
Q ss_pred CCcccccCCCcHHHHHHhhcCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy825 248 TPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSEL-YHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTRE 326 (565)
Q Consensus 248 ~~~~~iKe~k~~~~LmqsLn~L~TpEEKle~L~KKYsEL-l~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKs 326 (565)
+..--.|++-.+.+++-...++ =++..+++|+.- +..|-.--.-++..+.-...+|++....|.|+.....-|-
T Consensus 209 ~~~n~~KD~iLv~lili~v~gc-----w~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~ 283 (575)
T KOG4403|consen 209 TNHNWTKDFILVVLILIGVGGC-----WFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKL 283 (575)
T ss_pred CCcchhhhHHHHHHHHHHhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhh
Confidence 3333445444444454444444 245555555532 1111111112233333344556666666666554444333
Q ss_pred hHHHHHH
Q psy825 327 KLENLCR 333 (565)
Q Consensus 327 KLEsLCR 333 (565)
-||.--+
T Consensus 284 ~lerkl~ 290 (575)
T KOG4403|consen 284 DLERKLD 290 (575)
T ss_pred hHHHHHh
Confidence 3443333
No 228
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.72 E-value=4.8e+02 Score=24.56 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy825 466 INKLEKETATWKQRWEKSHEAYLEMSNEKTKAESEL-ITTCRQLAALLKLCRTLQTERAEMLAKLNGAGG 534 (565)
Q Consensus 466 iKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEl-e~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g 534 (565)
++.|......|....+.....+-.+-..+.....+. ...+.-++-|-=|.--|..-|+.|...|+..|.
T Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 43 EKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 444444445555544454444444445555555444 567778888888888899999999999999875
No 229
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.14 E-value=7.3e+02 Score=26.48 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy825 394 KKFRELLIQYDEKEQELLD----YKAKYLEMQKTENGLRKQI 431 (565)
Q Consensus 394 eKLKsLIEQYElREehf~K----lq~Qv~~L~etE~eLR~QL 431 (565)
.||.+=..=|+=|-+|+.- |...+..|..-...|..++
T Consensus 126 aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~ 167 (312)
T smart00787 126 ARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKEL 167 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667788888888775 4444444544444444433
No 230
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=28.92 E-value=5.8e+02 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 407 EQELLDYKAKYLEMQKTENGLRKQISMYG 435 (565)
Q Consensus 407 Eehf~Klq~Qv~~L~etE~eLR~QLniY~ 435 (565)
|..+.+.+..+..|...-..||..|.+..
T Consensus 152 e~~~~~~qe~i~qL~~EN~~LRelL~Is~ 180 (181)
T PF05769_consen 152 EENSQEEQEIIAQLETENKGLRELLQISK 180 (181)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344456667777666678999998763
No 231
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=28.81 E-value=6.4e+02 Score=25.74 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 450 EIFAGFKSEMESMSSKINKLEKETATWKQRWEK-----SHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAE 524 (565)
Q Consensus 450 EvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~-----sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~ 524 (565)
.++..|..|...+..-+++.+.+...|++|.-+ ....+.+++++-+....+++.+.. .+|.++|-.||.-
T Consensus 112 ~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~-----~~lr~al~EERrR 186 (223)
T cd07605 112 KFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVS-----QGLRDALLEERRR 186 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 444556666666666666666666666666443 444556666666655566665554 4788999999987
Q ss_pred HHHHHhhcCCc
Q psy825 525 MLAKLNGAGGY 535 (565)
Q Consensus 525 L~~kLk~~~g~ 535 (565)
+-.-+....+.
T Consensus 187 yc~lv~~~c~v 197 (223)
T cd07605 187 YCFLVDKHCSV 197 (223)
T ss_pred HHHHHHHHHHH
Confidence 65555544443
No 232
>KOG2129|consensus
Probab=28.71 E-value=9.4e+02 Score=27.62 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy825 458 EMESMSSKINKLEKETATWKQRWEKSHEAY----LEMSNEKTKAESELIT----TCRQLAALLKLCRTLQTERAEM 525 (565)
Q Consensus 458 EMEKMSKKiKKLEKEn~~wKrK~E~sNkaL----leMaEER~k~~kEle~----l~kKieKLE~LCRALQ~ER~~L 525 (565)
+-..|.-.|..|--|..-+++-+-.+.... ...++|......+.++ |..-+++=+.|||.|-.-|..|
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsessl 322 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSL 322 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 334455566666666666666554444332 2233333334444444 4455578899999998777653
No 233
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.36 E-value=1.1e+03 Score=28.32 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 296 q~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qM 375 (565)
++++++++..|+-.|+..|..-+ +|+|++-..-+.+.- +..++.......|.+-+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L--------------~e~Q~qLe~a~~als-----------~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNL--------------QESQKQLEHAQGALS-----------EQQEKINRLTEQLDALR 320 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHh
Q ss_pred hhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy825 376 QESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF 455 (565)
Q Consensus 376 EE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TF 455 (565)
.-+.........++..-...... +.-|+.-=--+.-|+.++...-..=..|+..|..-..+|..++. .|
T Consensus 321 ~l~~~ke~~~~~d~~~~~~s~~d-~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~----------~~ 389 (717)
T PF09730_consen 321 KLQEDKEQQSAEDSEKERDSHED-GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE----------RY 389 (717)
T ss_pred hhccchhhhhhhhcccccccccc-cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
+.++...-..+..|......|..-......-+..|=.+=.....-.......+...+...-++..+=.+||..+=-.+|.
T Consensus 390 ~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 390 KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred --chhhhhhhhhhccccCCCCcccCCCCccCC
Q psy825 536 --SYLILSYMKKFDRRNCNNGGLMEPKSKREG 565 (565)
Q Consensus 536 --s~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 565 (565)
+-+++.|++.... .+++..-..|...+.|
T Consensus 470 TPnRVmLD~yr~~r~-~~~~~~~~e~~~~~s~ 500 (717)
T PF09730_consen 470 TPNRVMLDYYRQGRQ-TRRESSSVEERGLSSP 500 (717)
T ss_pred CCccHHHHHHHhhhh-hhccCCCcccccccCc
No 234
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=28.17 E-value=1.2e+03 Score=28.76 Aligned_cols=132 Identities=13% Similarity=0.206 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHH
Q psy825 328 LENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKE 407 (565)
Q Consensus 328 LEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElRE 407 (565)
|..+.++.=.+-..+-..-.+-.-..-+.|..+.+-|--++..|...++--... +...+... .|++.|.+-+
T Consensus 358 l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s-----~~~~~a~~---~l~~~f~~s~ 429 (957)
T PRK13979 358 LKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSS-----KSKKDASE---NLIEKFGFTD 429 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC-----CCHHHHHH---HHHHHhCCCH
Confidence 444444444443333322222223344567788888888888777766532211 11112222 2355566656
Q ss_pred HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy825 408 QELLD-YKAKYLEMQKTEN-GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN 467 (565)
Q Consensus 408 ehf~K-lq~Qv~~L~etE~-eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiK 467 (565)
.|-+. +.-++..|+..|. .|+..+..-.....+++..|+....+..-.+.|+....++--
T Consensus 430 ~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 430 EQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred HHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 55555 4445556666654 577777777778888899999999999999988887766543
No 235
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.85 E-value=4.6e+02 Score=29.05 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
..+-.+|.-|.+.| ..++-+ +....+.+...+++|+++...|..+.+. ..+++
T Consensus 384 ~G~~~~l~~~l~~~-------~~~~G~---l~~~~~~l~~~i~~l~~~i~~~~~rl~~-----------------~e~rl 436 (462)
T PRK08032 384 TGITTQIATNLKSW-------LSTTGI---IKTATDGVNKTLKKLTKQYNAVSDSIDA-----------------TIARY 436 (462)
T ss_pred CcHHHHHHHHHHHH-------HcCCcc---chhHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 34555555555554 234444 4445567888888889988888887655 23467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 505 CRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 505 ~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
.+|-..|+.+.-.||.+..-|.+.|
T Consensus 437 ~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 437 KAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999988887765
No 236
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.84 E-value=6e+02 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 509 AALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 509 eKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
..|..|-+.|...|..+...|...
T Consensus 133 ~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 133 QRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777777766654
No 237
>KOG1003|consensus
Probab=27.71 E-value=6.9e+02 Score=25.75 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HH--HHHhHHHHHHHHHHHHH
Q psy825 268 DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQ--EL--TREKLENLCRELQKQNK 340 (565)
Q Consensus 268 ~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~Ka--Il--aKsKLEsLCRELQKqNK 340 (565)
.+...++++..+..+..++....-.-.+.++.+.-+..++--..+.+...+.=+ |. +-.|++...|=|-=-+-
T Consensus 19 ele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~ 95 (205)
T KOG1003|consen 19 ELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEG 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888888887777766666666666665555544444444444322 22 33466666665543333
No 238
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.50 E-value=6.7e+02 Score=25.50 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 396 FRELLIQYDEKEQELLD-YKAKYLEMQKTEN----GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470 (565)
Q Consensus 396 LKsLIEQYElREehf~K-lq~Qv~~L~etE~----eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE 470 (565)
....++.|+..-.+|.. +-.-|..|+..|. .|+..|..|..-+.....+ -..++..++.-|+.+. .+
T Consensus 166 y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~---~~~~~e~~~~~l~~id-----~~ 237 (261)
T cd07674 166 LRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQ---IGQVHEEFKQNVENVG-----VE 237 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHhCC-----HH
Confidence 44455555555445543 4444556666664 4666666665544443333 3347777777777665 34
Q ss_pred HHHHHHHH
Q psy825 471 KETATWKQ 478 (565)
Q Consensus 471 KEn~~wKr 478 (565)
++...|-.
T Consensus 238 ~Di~~fv~ 245 (261)
T cd07674 238 NLIRKFAE 245 (261)
T ss_pred HHHHHHHH
Confidence 55555544
No 239
>PRK10869 recombination and repair protein; Provisional
Probab=27.47 E-value=9.6e+02 Score=27.30 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 434 YGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 434 Y~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
.-+..+++++-|..=+.+.-.|...++.+-....+++.+...|.
T Consensus 294 dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 294 DPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 34456778888888888888888777777777777776666554
No 240
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=26.96 E-value=55 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhh
Q psy825 503 TTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLIL 540 (565)
Q Consensus 503 ~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~~ 540 (565)
+++-....|+.||..+...+..|.++|... |+.|-+.
T Consensus 15 kLRD~~~sLd~Lc~~~~id~~~l~~kL~~~-Gy~Y~~~ 51 (55)
T PF14056_consen 15 KLRDEYSSLDELCYDYDIDKEELEEKLASI-GYEYDEE 51 (55)
T ss_pred HHHhccCCHHHHHHHhCCCHHHHHHHHHHc-CCeEchh
Confidence 566777889999999999999999999988 7776654
No 241
>KOG0995|consensus
Probab=26.95 E-value=1.1e+03 Score=27.78 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHH
Q psy825 409 ELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKET-------ATW-KQRW 480 (565)
Q Consensus 409 hf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn-------~~w-KrK~ 480 (565)
||..+..-+.+..+.=..+..+|+.-.++|...- ..+-+.-..|+.||++|-+.+..|.-.. ..+ +.=-
T Consensus 447 ~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k---~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e 523 (581)
T KOG0995|consen 447 HFSNKASTIEEKIQILGEIELELKKAESKYELKK---EEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIE 523 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444445555555555555443 4455677788889998888776554221 111 1111
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 481 EKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 481 E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
-..+.++....++|++..+++..+-..+
T Consensus 524 ~el~~~~~~~~eer~ki~~ql~~~i~~i 551 (581)
T KOG0995|consen 524 LELDRMVATGEEERQKIAKQLFAVIDQI 551 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444445566665555555544444
No 242
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.91 E-value=4.4e+02 Score=27.10 Aligned_cols=62 Identities=3% Similarity=0.070 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 471 KETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 471 KEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
.....+-+.....++.+++|...=..+..++..|+.+++.+.-=...|+..-.++|..|-..
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667788889999999999999999999999999999999998888888777653
No 243
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.64 E-value=2.8e+02 Score=23.93 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 450 EIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE---MSNEKTKAESELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 450 EvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle---MaEER~k~~kEle~l~kKieKLE~LCRALQ 519 (565)
.+|.....=-..+....+.+......+|.|+..+-.+|-. |-.--..|..++..++.++.+...+..-+.
T Consensus 7 ~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 7 LIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444322227777899999999999999999888866 333344567778888887777777766554
No 244
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.62 E-value=2.2e+02 Score=25.92 Aligned_cols=68 Identities=21% Similarity=0.451 Sum_probs=44.8
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHh-------hhHHH---HHHHHHHHHHHHHHHHHH
Q psy825 407 EQELLD-----YKAKYLEMQKTENGLRKQISMYGEKYDEFQQ--TLS-------RSNEI---FAGFKSEMESMSSKINKL 469 (565)
Q Consensus 407 Eehf~K-----lq~Qv~~L~etE~eLR~QLniY~EKFeEFQD--TL~-------KSNEv---F~TFKkEMEKMSKKiKKL 469 (565)
..||.+ +++.+..+-..-..|..+|+-|.-+|..+.+ .+. .+-.+ .-.-+-++..++-++.+|
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eL 88 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMEL 88 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 347766 7888888888899999999999999987753 111 11111 222334666666666666
Q ss_pred HHHHH
Q psy825 470 EKETA 474 (565)
Q Consensus 470 EKEn~ 474 (565)
+=||.
T Consensus 89 q~ENR 93 (96)
T PF11365_consen 89 QYENR 93 (96)
T ss_pred hhccc
Confidence 66553
No 245
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=26.58 E-value=4.8e+02 Score=23.49 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLD 412 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~K 412 (565)
-|..+|+..|..|..-+..|..
T Consensus 92 ~L~~~f~~~m~~fq~~Q~~~~~ 113 (151)
T cd00179 92 GLSKKFVEVMTEFNKAQRKYRE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888887777754
No 246
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.35 E-value=5.9e+02 Score=24.46 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=33.9
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy825 433 MYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK---ETATWKQRWEKSHEAY 487 (565)
Q Consensus 433 iY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEK---En~~wKrK~E~sNkaL 487 (565)
.|+.-|.....-+..-++-+.+++.++..-.+.|+.|.+ .+..|+.+.+......
T Consensus 10 ~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 10 ENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344444434444444467777788888888887777777 6666666655544433
No 247
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.26 E-value=5.2e+02 Score=23.85 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccCCCCCcccccCCCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 233 KTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKE 312 (565)
Q Consensus 233 ~~~~~d~~~~~~~~~~~~~~iKe~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD 312 (565)
+.-|+++....+. ......+...+|-+.+--.....-......|...++++..++..+......|.....
T Consensus 14 ~G~~~~~~~~~~~----------~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~ 83 (151)
T PF11559_consen 14 RGYPSDGLLFDSA----------EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLE 83 (151)
T ss_pred CCCCCCCccCccc----------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy825 313 ILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQ 376 (565)
Q Consensus 313 ~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qME 376 (565)
.+..++.-.-.--..|..=++.++..++..++|..+...--...|.. |..-|....-.++
T Consensus 84 ~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq----~~~e~rkke~E~~ 143 (151)
T PF11559_consen 84 ELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ----YEHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
No 248
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=26.26 E-value=5.3e+02 Score=27.67 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=75.2
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy825 430 QISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLA 509 (565)
Q Consensus 430 QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKie 509 (565)
+|+.|.--=++=-++..+.|.|... |-..--.+..||=-|..|-.|++....+.+..++-.+....+|-.+..++.
T Consensus 194 El~sfK~sEeeNar~V~kAnsVldR----mk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~ 269 (311)
T PF04642_consen 194 ELESFKRSEEENARAVEKANSVLDR----MKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLK 269 (311)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHH----HHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3444443334445667777777655 445567788899999999999999999999999999999999999999998
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHhhcC
Q psy825 510 ALLK-----LCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 510 KLE~-----LCRALQ~ER~~L~~kLk~~~ 533 (565)
+|+- |.-|=+.||.....++.+-.
T Consensus 270 kmeE~Qa~~l~~aR~~errkvraqf~dfs 298 (311)
T PF04642_consen 270 KMEEEQAEMLRAARTEERRKVRAQFHDFS 298 (311)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7753 44555677777777776653
No 249
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.31 E-value=6.7e+02 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQT 444 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDT 444 (565)
..|+.++.....+..+.+..
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~ 91 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEK 91 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 250
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.22 E-value=4.6e+02 Score=23.66 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 272 PDEKFKIISQKYSEL-YHDFNILSLLSKQNEKQIALLQNEKEILTLENS 319 (565)
Q Consensus 272 pEEKle~L~KKYsEL-l~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~ 319 (565)
.|.|+.+|-+-|..- ...++.++.++..+.....+|....+..+.|-.
T Consensus 32 HE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 32 HETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887777532 333555555555555555555555555554433
No 251
>KOG1962|consensus
Probab=25.19 E-value=7.7e+02 Score=25.46 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQ 507 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kK 507 (565)
..|...=..+...+.+++. +..|++.+.-...+|+.|......+.+..+.-...|.-.=.....+++++...
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4555666677777777555 77888888888888888888777776665544443333333333344443333
No 252
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.14 E-value=1.1e+03 Score=27.40 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 458 EMESMSSKINKLEKETATWKQRWEKSHEAY----------LEMSNEKTKAESELITTCRQLAALLKLC 515 (565)
Q Consensus 458 EMEKMSKKiKKLEKEn~~wKrK~E~sNkaL----------leMaEER~k~~kEle~l~kKieKLE~LC 515 (565)
-|++|.-.|-.-|.|...|+.+-+.....| =.|..||.++..+++...-+++.|.+-.
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 355555555555666666666555555444 2378888888888887777777766544
No 253
>KOG4603|consensus
Probab=24.94 E-value=2.3e+02 Score=28.69 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 446 SRSNEIFAGFKSEMESM---SSKINKLEKE-----TATWKQRWEKSHEAYLEMS--NEKTKAESELITTCRQLAALLKLC 515 (565)
Q Consensus 446 ~KSNEvF~TFKkEMEKM---SKKiKKLEKE-----n~~wKrK~E~sNkaLleMa--EER~k~~kEle~l~kKieKLE~LC 515 (565)
..|.++|+.|+.|+-.- -+.+-.|+-. ..-=|.|.=-.|+-+++|+ ++=+.++.++.+++.|++.|..-|
T Consensus 23 ~ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~ 102 (201)
T KOG4603|consen 23 YSSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTC 102 (201)
T ss_pred CchHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46789999999999222 2222233221 1111334444677778873 677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy825 516 RTLQTERAEMLAKLN 530 (565)
Q Consensus 516 RALQ~ER~~L~~kLk 530 (565)
+.+-+|=..|.+.|.
T Consensus 103 s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 103 SYVEAEIKELSSALT 117 (201)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999998888776553
No 254
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.49 E-value=4.8e+02 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 468 KLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 468 KLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~ 513 (565)
.||.....+-...+..-..+.++++|.+.+.-|...|+..+..++.
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444556777888888777777777777776665
No 255
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.34 E-value=9.4e+02 Score=26.14 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
Q psy825 362 VKLENTLSEISNQVQESNNKTMKLRGDN-LDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTE---------------N 425 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n~KL~~EN-~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE---------------~ 425 (565)
..++..|.+.+..+..+..++.-...++ ..+.+++..+..++..-+..+...+.++..+...= .
T Consensus 171 ~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~ 250 (498)
T TIGR03007 171 KTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANS 250 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCC
Confidence 3567777777777776655543221111 23556677776666655555555555555554321 2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINK 468 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKK 468 (565)
.|+.||..-.....+......-.+-.+-.-+.+|+.+...+..
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555566666666555443
No 256
>KOG3977|consensus
Probab=24.12 E-value=1.5e+02 Score=30.34 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=32.4
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHH
Q psy825 320 KQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRE 398 (565)
Q Consensus 320 KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKs 398 (565)
=++-.+..|+.|||+|--..- ..++.|=+|......+..+|. .|...-.+|++||+.
T Consensus 85 d~l~d~g~Lq~ly~~l~arv~-----------~leEEkYDi~~~v~qt~~EIn-----------dLtikvnDLRGKFvk 141 (221)
T KOG3977|consen 85 DSLDDRGLLQDLYRELHARVD-----------ALEEEKYDIEAKVTQTETEIN-----------DLTIKVNDLRGKFVK 141 (221)
T ss_pred CcccchHHHHHHHHHHHHHHH-----------HHHHhhcchhheeehhhhhHH-----------HHHHHHHHhcccccC
Confidence 344466779999999964433 333444455544444444442 233344468887764
No 257
>KOG1962|consensus
Probab=24.00 E-value=8.2e+02 Score=25.31 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHH
Q psy825 335 LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFR 397 (565)
Q Consensus 335 LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLK 397 (565)
|.-.|..++++... .+++-+++..--++-+..-..+..|.+....+-+.|.++|..|++++.
T Consensus 149 ~~~~~~~~~~~~~k-L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEK-LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44455555555443 222222222222344555555556666666666667777766666553
No 258
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=23.93 E-value=1.3e+03 Score=27.49 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 485 EAYLEMSNEK-TKAESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 485 kaLleMaEER-~k~~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
+..++.|-|- +.|...+..+..-++.|-.+|-.||..|-
T Consensus 115 K~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~ 154 (683)
T PF08580_consen 115 KKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRH 154 (683)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555554 47888899999999999999999999985
No 259
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=23.85 E-value=6.7e+02 Score=27.58 Aligned_cols=83 Identities=25% Similarity=0.187 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy825 277 KIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEIL---TLENSKQELTREKLENLCRELQKQNKAIREENLQKFREE 353 (565)
Q Consensus 277 e~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~l---qsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EE 353 (565)
+-|+.+-.||...+---+.+++.+.|-.-|-.-|.+.| ..||.=+|++-.---.-.|-+|++...|.+|-+.. +.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtL--eR 80 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTL--ER 80 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 45677788888888888888888888777776666655 45899999988888889999999999999997653 33
Q ss_pred HHHHHhHH
Q psy825 354 EEKRKNVS 361 (565)
Q Consensus 354 EeKRkELs 361 (565)
|-.|--++
T Consensus 81 ELARaKV~ 88 (351)
T PF07058_consen 81 ELARAKVS 88 (351)
T ss_pred HHHHhhhh
Confidence 44454444
No 260
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.73 E-value=5.7e+02 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 284 SELYHDFNILSLLSKQNEKQIALLQNEKEILTL 316 (565)
Q Consensus 284 sELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqs 316 (565)
..+...+..+..++..++..+..|..|...|+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 261
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.68 E-value=8e+02 Score=25.09 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy825 409 ELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQ-RWEKSHEAY 487 (565)
Q Consensus 409 hf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKr-K~E~sNkaL 487 (565)
.+..++.++..+.+.-..|+.++..|.++|- ....|++...+++ ++|...++. -.+..-..|
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~l--------------R~~AefeN~RKR~---~kE~e~~~~~a~e~~~~~L 117 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLL--------------RTVAEYDNYRKRT---AKEKEGIYSDACEDVLKEL 117 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444666666555555556666665554443 3344555554444 344444332 223333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 488 LEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 488 leMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|..+.- +++.......+..|...++-=+.+|...|...|
T Consensus 118 LpVlDn-------LerAl~~~~~~~~l~~Gv~mi~kql~~vL~k~G 156 (211)
T PRK14160 118 LPVLDN-------LERAAAVEGSVEDLKKGIEMTVKQFKTSLEKLG 156 (211)
T ss_pred hhHHhH-------HHHHHhcccchhHHHHHHHHHHHHHHHHHHHCC
Confidence 333322 111111122345666777777778888887775
No 262
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.18 E-value=3.9e+02 Score=26.41 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=34.4
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 262 MLQMF-NDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIA 305 (565)
Q Consensus 262 LmqsL-n~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~d 305 (565)
+.-.+ ..+.|..++++.|.+...++.....|+..++..+++|..
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 357788888999999999998888888888888887654
No 263
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.07 E-value=5.5e+02 Score=26.15 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCCCC-CcccCCCCCcccccCCCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 236 PPDTG-ASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQI 304 (565)
Q Consensus 236 ~~d~~-~~~~~~~~~~~~iKe~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~ 304 (565)
|.|.. .+-|+++-.+...+... .+.+++|+.|.+...++...+.|+..++..+++|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~ 68 (209)
T PRK14141 11 PADAARDANNPVDREAKPYEMED------------DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRT 68 (209)
T ss_pred cchhhhhccCccccccccccCCC------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 33566666666433211 33456777777777777777777777777777643
No 264
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.86 E-value=1.2e+03 Score=26.70 Aligned_cols=164 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFRE 352 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~E 352 (565)
++.++.+-+-|..-..++.++..+++.++.++.+|..++.++..+..---.-..-|..-.-.|--+-..|+-++.+...+
T Consensus 122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~ 201 (499)
T COG4372 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE 201 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH--HHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 353 EEEK--RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQ 430 (565)
Q Consensus 353 EEeK--RkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~Q 430 (565)
+... |.+.......-|.......++-...-.....--..+..-+-.=.++...||.++..+..+..-+.+.-..|..=
T Consensus 202 ~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 202 AQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy825 431 ISMYGE 436 (565)
Q Consensus 431 LniY~E 436 (565)
-..|.+
T Consensus 282 yQ~y~~ 287 (499)
T COG4372 282 YQAYVR 287 (499)
T ss_pred HHHHHH
No 265
>KOG4571|consensus
Probab=22.81 E-value=7.1e+02 Score=26.93 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
|.|||.+...+.-||+.|..||.+. ..+.+.|.-|..|++.++..|.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa---------------------~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQA---------------------SELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 6799999999999999999998763 3445567777777777777663
No 266
>PF13514 AAA_27: AAA domain
Probab=22.56 E-value=1.5e+03 Score=27.84 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy825 392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDE 440 (565)
Q Consensus 392 L~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeE 440 (565)
.-..|...+.++......+..+..++..+...-..+..+|..|......
T Consensus 785 ~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 785 ALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444444445555554444443
No 267
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.53 E-value=5.4e+02 Score=22.70 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 482 KSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 482 ~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
....-|-.|-..|..+..+++.......+|+..|+.+-..=......|+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556688999999999999999999999999988765444444444
No 268
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=22.43 E-value=6e+02 Score=24.72 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH
Q psy825 394 KKFRELLIQYDEK-EQELLDYKAKYLEMQKTENGL-RKQISMYGEKYDEFQQTLSRSNE-IFAGFKSEMESMSSKINKLE 470 (565)
Q Consensus 394 eKLKsLIEQYElR-Eehf~Klq~Qv~~L~etE~eL-R~QLniY~EKFeEFQDTL~KSNE-vF~TFKkEMEKMSKKiKKLE 470 (565)
-.+=.|++||-.| +-|++.++.++..|..+=... ---+..+.+.| ..|.+ +|..--.-|..+-.....|+
T Consensus 19 ~Q~P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~-------~~s~dp~~~~~a~~~~~~~~R~~~L~ 91 (167)
T PF11157_consen 19 SQIPEFAQQYQQRLGGHLDELRRQVAGFQATAARYFGGDREALIAHY-------RQSSDPVFRARAESMQATIERYQRLS 91 (167)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-------HhCCCHHHHhhHHHHHHHHHHHHHHH
Confidence 4456799999999 679999999999988775543 33333333333 33444 88888888888888888888
Q ss_pred HHHHHH
Q psy825 471 KETATW 476 (565)
Q Consensus 471 KEn~~w 476 (565)
.....+
T Consensus 92 ~~~~~l 97 (167)
T PF11157_consen 92 QQLQAL 97 (167)
T ss_pred HHHHHH
Confidence 877766
No 269
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.12 E-value=7.7e+02 Score=24.30 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH----HHHHHHHHHHHHhhhccccch--hhhc--cHHHHHHHHHHHHH
Q psy825 331 LCRELQKQNKAIREENLQKFREEEEKRKNVSVK----LENTLSEISNQVQESNNKTMK--LRGD--NLDMAKKFRELLIQ 402 (565)
Q Consensus 331 LCRELQKqNK~LKEEnk~r~~EEEeKRkELseK----FQ~tL~DIq~qMEE~~~~n~K--L~~E--N~eL~eKLKsLIEQ 402 (565)
+|==.+--+...-+|-.+.+.-+...|..|..+ |+.+|..++...+....-..+ +..+ -.+|..++..|-..
T Consensus 56 Icpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e 135 (189)
T PF10211_consen 56 ICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEE 135 (189)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555567777777777777777888777644 677777766655443322111 1111 12344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 403 YDEKEQELLDYKAKYLEMQKTENG 426 (565)
Q Consensus 403 YElREehf~Klq~Qv~~L~etE~e 426 (565)
.+.-+.++..+..++..+...+.+
T Consensus 136 ~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 136 KEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555444433
No 270
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.09 E-value=3.6e+02 Score=24.36 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825 282 KYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE 334 (565)
Q Consensus 282 KYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE 334 (565)
.|.++..+...++.++..++.+...|..+.+.++.. .+=+|.++|+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~-------~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG-------QEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-------HHHHHHHHHH
Confidence 566666666666666666666666666666666542 1445566654
No 271
>PF13166 AAA_13: AAA domain
Probab=21.99 E-value=1.2e+03 Score=26.50 Aligned_cols=101 Identities=12% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE-----KETATWKQRWEKSHEAYLEMSNEKTKAESELITTCR 506 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE-----KEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~k 506 (565)
..+..-..++...+...|.....|+.+.......+.... .....+...+......+-.+..+.......+..+..
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 445 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEK 445 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555556555555554443321 111122223333333333333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 507 QLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 507 KieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
++..|+.-....+.=...+...|+..
T Consensus 446 ~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 446 EIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44444433332233333455555555
No 272
>PLN02678 seryl-tRNA synthetase
Probab=21.98 E-value=8.2e+02 Score=27.48 Aligned_cols=77 Identities=8% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLEMS---NEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMa---EER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
.++-.+....++|-.+...|+.+-....+.|-.+. ++...+..+...+..++..|+.-.+.++.+...+...|=..-
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444555555555555555555555555443311 333455566778889999999999999999888877775543
No 273
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.94 E-value=1e+03 Score=25.83 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELI--------TTCRQLAALLKLCRTLQTERAEML 526 (565)
Q Consensus 459 MEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle--------~l~kKieKLE~LCRALQ~ER~~L~ 526 (565)
+....-.+-.|.+++..|+.-|..+...|=+++.++..+..++= ..+.||..|+.++.+++.....+.
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~ 214 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPK 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchh
Confidence 33344444455566666666666666666666666655555432 234455555555666665444333
No 274
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.93 E-value=4.8e+02 Score=24.44 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 256 HPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNE 310 (565)
Q Consensus 256 ~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKE 310 (565)
.+..+.|..+|.++...++- =.++..+|..+++....++...-+..+.+.+.
T Consensus 82 akqIe~LIdsLPg~~~see~---Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 82 AKQIEYLIDSLPGIEVSEEE---QLKRIKELEEENEEAEEELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHSTTSSS-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888889887765542 12455556666666666555444444444333
No 275
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=21.92 E-value=4.6e+02 Score=21.71 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 416 KYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT 495 (565)
Q Consensus 416 Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~ 495 (565)
.+......=..|..++..|...|.... . .=|...|..|..-+..+...|..+..+...+....+.+-..++...-++.
T Consensus 13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556666666666666555 3 45668888888889999999999999999999988888888887777766
Q ss_pred HhHHHHH
Q psy825 496 KAESELI 502 (565)
Q Consensus 496 k~~kEle 502 (565)
.+..-.+
T Consensus 91 ~~e~L~e 97 (123)
T PF02050_consen 91 KLEKLKE 97 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 276
>KOG0244|consensus
Probab=21.85 E-value=1.6e+03 Score=27.91 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=83.2
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHH
Q psy825 317 ENSKQELTREKLENLCRELQKQNKAI--REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAK 394 (565)
Q Consensus 317 El~KaIlaKsKLEsLCRELQKqNK~L--KEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~e 394 (565)
++..++....+..+|.+||-.-++.| ++...+++-.+...-..+.++|+..+...-..+-+-..+..+++.
T Consensus 458 ~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~------- 530 (913)
T KOG0244|consen 458 ELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRN------- 530 (913)
T ss_pred ccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHH-------
Confidence 34556667788888888888887765 344444443333333344556666666655554443433444443
Q ss_pred HHHHHHH-HHHHHHHHHHH---HHHHHHH-----------------HHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy825 395 KFRELLI-QYDEKEQELLD---YKAKYLE-----------------MQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFA 453 (565)
Q Consensus 395 KLKsLIE-QYElREehf~K---lq~Qv~~-----------------L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~ 453 (565)
.|..|-- .|-+.+.+.++ +..|++. +..+-+-|+.-+-.-..-|-++.-.+.-=-+.|.
T Consensus 531 el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr 610 (913)
T KOG0244|consen 531 ELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFR 610 (913)
T ss_pred HHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3333333 44444443333 2222111 1122233344444444444444444444445555
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 454 GFKS----EMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNE 493 (565)
Q Consensus 454 TFKk----EMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEE 493 (565)
.|+. |+..|.++-.+-+-+...+...+...+..|..-.+|
T Consensus 611 ~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e 654 (913)
T KOG0244|consen 611 QWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE 654 (913)
T ss_pred HHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 5543 555566665555555555555544444444433333
No 277
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=21.83 E-value=1.4e+02 Score=34.08 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH------------------HHHHHhHHHHH
Q psy825 293 LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIR------------------EENLQKFREEE 354 (565)
Q Consensus 293 lqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LK------------------EEnk~r~~EEE 354 (565)
|...+..+...++.+.+++..-..++. .+...++.||-+|-...-.+- ......++.+-
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~---~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~ 158 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFK---ELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEK 158 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhcc---------------ccchhhhccHH-HHHHHHHHHHHHHHHHHHHHH------
Q psy825 355 EKRKNVSVKLENTLSEISNQVQESNN---------------KTMKLRGDNLD-MAKKFRELLIQYDEKEQELLD------ 412 (565)
Q Consensus 355 eKRkELseKFQ~tL~DIq~qMEE~~~---------------~n~KL~~EN~e-L~eKLKsLIEQYElREehf~K------ 412 (565)
..|.+....+-..|..+-..|...-. ...-|..+|++ |...+..|.+++..|+.+++.
T Consensus 159 ~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~ 238 (619)
T PF03999_consen 159 ERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIE 238 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Q psy825 413 --------------------------------------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAG 454 (565)
Q Consensus 413 --------------------------------------lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~T 454 (565)
..-+.+-|...=..+|..|..|-++.--=++-... |..
T Consensus 239 ~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~----F~~ 314 (619)
T PF03999_consen 239 ELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQA----FTP 314 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHH----HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQ 507 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kK 507 (565)
|-.++-. ..-+..+|.|...|+..|+. ++.|+++++++...-.+...|...
T Consensus 315 ~~~d~~~-E~lL~~hE~Ei~~Lk~~~~~-~k~Il~~v~k~~~l~~~~~~Le~~ 365 (619)
T PF03999_consen 315 FYIDSYT-EELLELHEEEIERLKEEYES-RKPILELVEKWESLWEEMEELEES 365 (619)
T ss_dssp ---------------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcccch-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 278
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=21.64 E-value=8.4e+02 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 457 kEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
++++++..+..+.+.....|...|..+-..|-.
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~ 203 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLER 203 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888776655544
No 279
>KOG3478|consensus
Probab=21.62 E-value=7.1e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHhHHH----HHHHHHHHHHHHHhhhccccchh
Q psy825 353 EEEKRKNVSV----KLENTLSEISNQVQESNNKTMKL 385 (565)
Q Consensus 353 EEeKRkELse----KFQ~tL~DIq~qMEE~~~~n~KL 385 (565)
-..+|-+.++ .+.+.|.|++..+..+.+.-.++
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345655543 36677777777776666543333
No 280
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.54 E-value=2.2e+02 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=21.8
Q ss_pred HHHHhhcCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 261 VMLQMFNDSQT----PDEKFKIISQKYSELYHDFNILSLLSK 298 (565)
Q Consensus 261 ~LmqsLn~L~T----pEEKle~L~KKYsELl~E~Rrlqkq~k 298 (565)
.|...|..|++ -|+|-++|.-+..+|+..+|..-.+++
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554443 356666666666666666665554443
No 281
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.45 E-value=1.1e+03 Score=25.69 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQ-YDEKEQELLDYKAKYLEMQKTENGL----RKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK 465 (565)
Q Consensus 391 eL~eKLKsLIEQ-YElREehf~Klq~Qv~~L~etE~eL----R~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKK 465 (565)
.|+.|++.|=+. +.+|.+ ...|.....++.+.|..| -.||..=...+..+.+-|+.=.+=+..+..||..+-..
T Consensus 164 ~Lq~Klk~LEeEN~~LR~E-a~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSE-ASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777552 334432 112222222333333333 24677777788888888888888899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 466 INKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEML 526 (565)
Q Consensus 466 iKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~ 526 (565)
+-.|++-...+-.=.|.....|..+-+-...+..++.-++.+-.-..++...-|.|=+.|.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888877777777888888888888888888888888755544
No 282
>KOG1850|consensus
Probab=21.42 E-value=1.1e+03 Score=26.08 Aligned_cols=62 Identities=11% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIFA-------GFKSEMESMSSKINKLEKETATWKQRWEKSHEAY 487 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF~-------TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL 487 (565)
+++.-|+--.+=|.-|.+-|.+-+--.- .||.--+.-++..-.|--++...-..++..+.-|
T Consensus 233 efq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~ki 301 (391)
T KOG1850|consen 233 EFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKI 301 (391)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555566667777777777777665443 3444445555555555555555445555544443
No 283
>PRK10869 recombination and repair protein; Provisional
Probab=21.28 E-value=1.2e+03 Score=26.43 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILT 315 (565)
Q Consensus 279 L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lq 315 (565)
+...|.++....+.+.+++..+.........++|-++
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~ 191 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQ 191 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555556666666555555444444444443
No 284
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.94 E-value=6.6e+02 Score=23.08 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 491 SNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 491 aEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
...+..|..+-..+...+..++.=|--|..|-+-|+..|...
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556777777788888888888888888888888888653
No 285
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.92 E-value=1.1e+03 Score=25.81 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=67.7
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHhHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMS---NE-KTKAESELITTCRQ 507 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMa---EE-R~k~~kEle~l~kK 507 (565)
....+..+.|...|.+-+--....-.++-.+-...+++-.+...|+.......+.|-.+. ++ .+.+..+...+..+
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~ 84 (418)
T TIGR00414 5 KLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEE 84 (418)
T ss_pred HHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 344456667777777776111112355666677777777777777777666666665532 12 45566677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 508 LAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 508 ieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
+..|+.-..++..++..+...|=..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 85 LTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999988877776554
No 286
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.81 E-value=6e+02 Score=22.61 Aligned_cols=41 Identities=5% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 490 MSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 490 MaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
+-+-..-....+..+..+++.|+.-+..++.+-+.+...|.
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666778888888888888888888888877765
No 287
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=20.56 E-value=2.8e+02 Score=33.03 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEK 482 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~ 482 (565)
+.+|.+++.|++.+|+++...+..+-.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999988544
No 288
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.47 E-value=9.5e+02 Score=24.77 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy825 396 FRELLIQYDEKEQELLD-YKAKYLEMQKTENG----LRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463 (565)
Q Consensus 396 LKsLIEQYElREehf~K-lq~Qv~~L~etE~e----LR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMS 463 (565)
++..++.|..--.||.. +..=|..|+..|.. |+.-|..|..-... +...-..++..|+.-++.+.
T Consensus 173 Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~---~~~~~~~~~e~ir~~le~~d 242 (269)
T cd07673 173 YKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKE---IHIQIGQVHEEFINNMANTT 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHhCC
Confidence 45555555544445554 44445666666653 56666666662222 22444456666676666554
No 289
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.37 E-value=5.3e+02 Score=21.81 Aligned_cols=66 Identities=24% Similarity=0.384 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 410 LLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIF---------AGFKSEMESMSSKINKLEKETATW 476 (565)
Q Consensus 410 f~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF---------~TFKkEMEKMSKKiKKLEKEn~~w 476 (565)
++.+..++..+...-..|..+|.-=..+|.+|.+... .++.| ..+|++|..+..++.+|.+-...+
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~-~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ-INEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446677777777777888888888888877765332 22223 356677777777777666655443
No 290
>KOG2391|consensus
Probab=20.35 E-value=5.6e+02 Score=28.38 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 460 ESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRT 517 (565)
Q Consensus 460 EKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRA 517 (565)
..+-..+-++-.+...+++.+|..+.-.-+|.++++.+++++..+++.++=|.+=.|.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455666777788899999999999999999999999999999888888888776665
No 291
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.26 E-value=6.2e+02 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 449 NEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEM 490 (565)
Q Consensus 449 NEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleM 490 (565)
.++-......++.+...++.|++....+..++......|-+|
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777777666666655544
No 292
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=20.01 E-value=1.6e+02 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 498 ESELITTCRQLAALLKLCRTLQTERA 523 (565)
Q Consensus 498 ~kEle~l~kKieKLE~LCRALQ~ER~ 523 (565)
..|+.+...+++++|.+|.||+.=++
T Consensus 122 ~rElRRak~kvqkwErvcaAlRELnK 147 (155)
T PF07789_consen 122 NRELRRAKSKVQKWERVCAALRELNK 147 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999987654
Done!