Query psy825
Match_columns 565
No_of_seqs 121 out of 143
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 22:32:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.4 0.00087 3E-08 60.1 39.3 75 455-529 207-281 (284)
2 1c1g_A Tropomyosin; contractIl 98.4 0.0013 4.6E-08 58.9 38.2 25 497-521 235-259 (284)
3 1i84_S Smooth muscle myosin he 97.8 0.0001 3.5E-09 84.7 12.9 72 273-344 856-927 (1184)
4 1i84_S Smooth muscle myosin he 97.4 0.00044 1.5E-08 79.6 10.2 29 455-483 1079-1107(1184)
5 3na7_A HP0958; flagellar bioge 97.2 0.076 2.6E-06 51.5 21.6 145 386-535 31-191 (256)
6 3vkg_A Dynein heavy chain, cyt 94.9 4 0.00014 52.6 25.6 63 453-515 2045-2107(3245)
7 3oja_B Anopheles plasmodium-re 94.2 0.6 2.1E-05 48.6 13.9 51 455-505 528-578 (597)
8 3u1c_A Tropomyosin alpha-1 cha 93.3 3 0.0001 35.8 14.3 88 425-512 12-99 (101)
9 3tnu_B Keratin, type II cytosk 92.6 1.4 4.9E-05 38.9 11.6 86 432-520 11-96 (129)
10 3u59_A Tropomyosin beta chain; 92.5 3.7 0.00013 35.0 13.8 88 425-512 12-99 (101)
11 3oja_B Anopheles plasmodium-re 92.5 2 6.7E-05 44.8 14.4 115 286-401 461-579 (597)
12 3na7_A HP0958; flagellar bioge 91.5 10 0.00036 36.5 21.5 66 464-529 90-155 (256)
13 3tnu_A Keratin, type I cytoske 90.4 2.2 7.6E-05 37.8 10.6 87 432-521 13-99 (131)
14 2a01_A Apolipoprotein A-I; fou 89.9 13 0.00046 35.8 16.4 150 305-463 73-233 (243)
15 3o0z_A RHO-associated protein 89.8 14 0.00047 35.1 18.5 30 314-346 35-64 (168)
16 3o0z_A RHO-associated protein 89.1 15 0.00053 34.7 16.1 70 279-348 39-108 (168)
17 1ic2_A Tropomyosin alpha chain 87.7 5.6 0.00019 32.7 10.4 75 459-533 1-75 (81)
18 2dfs_A Myosin-5A; myosin-V, in 87.4 15 0.00052 42.7 17.4 65 452-519 986-1050(1080)
19 3oja_A Leucine-rich immune mol 85.0 16 0.00055 37.4 14.4 56 427-489 412-467 (487)
20 3trt_A Vimentin; cytoskeleton, 83.4 3.8 0.00013 32.9 7.3 45 433-477 32-76 (77)
21 2v71_A Nuclear distribution pr 83.2 33 0.0011 32.9 19.0 77 413-489 54-134 (189)
22 3vkg_A Dynein heavy chain, cyt 82.4 1.3E+02 0.0046 39.3 26.6 71 456-533 2027-2097(3245)
23 3ghg_A Fibrinogen alpha chain; 82.3 13 0.00043 40.8 12.7 92 419-514 54-153 (562)
24 2v71_A Nuclear distribution pr 81.2 40 0.0014 32.4 18.5 76 267-345 3-96 (189)
25 3bas_A Myosin heavy chain, str 80.3 25 0.00085 29.4 11.6 63 470-532 20-82 (89)
26 2ap3_A Conserved hypothetical 79.2 48 0.0016 32.0 18.3 151 266-442 8-175 (199)
27 3u1c_A Tropomyosin alpha-1 cha 77.7 33 0.0011 29.3 12.0 74 459-532 4-77 (101)
28 3u59_A Tropomyosin beta chain; 76.2 35 0.0012 28.9 12.0 73 459-531 4-76 (101)
29 2w83_C C-JUN-amino-terminal ki 75.9 14 0.00049 31.2 8.5 65 276-340 11-75 (77)
30 1ic2_A Tropomyosin alpha chain 74.3 31 0.0011 28.2 10.1 64 425-488 9-72 (81)
31 2fxo_A Myosin heavy chain, car 71.7 53 0.0018 28.9 18.6 109 391-513 17-125 (129)
32 2jee_A YIIU; FTSZ, septum, coi 71.1 47 0.0016 28.2 11.6 49 447-495 3-51 (81)
33 1nfn_A Apolipoprotein E3; lipi 68.7 64 0.0022 30.2 12.2 117 269-404 22-145 (191)
34 2v66_B Nuclear distribution pr 65.2 75 0.0026 28.2 15.2 75 416-490 4-82 (111)
35 2dfs_A Myosin-5A; myosin-V, in 64.7 2.2E+02 0.0074 33.4 27.1 32 461-492 1020-1051(1080)
36 3hnw_A Uncharacterized protein 61.4 64 0.0022 29.2 10.3 55 458-512 76-130 (138)
37 2fxo_A Myosin heavy chain, car 59.8 91 0.0031 27.4 15.8 60 410-483 64-123 (129)
38 1go4_E MAD1 (mitotic arrest de 58.7 16 0.00055 32.0 5.7 71 448-520 10-96 (100)
39 2ocy_A RAB guanine nucleotide 57.6 1.2E+02 0.0042 28.2 20.8 71 463-533 78-149 (154)
40 4dyl_A Tyrosine-protein kinase 57.4 1.7E+02 0.0059 29.8 22.6 38 502-539 362-399 (406)
41 2a01_A Apolipoprotein A-I; fou 57.3 16 0.00054 35.3 5.9 55 323-380 114-168 (243)
42 3iyk_A VP5; icosahedral virus; 57.2 1.9E+02 0.0066 31.6 14.6 130 332-466 92-227 (526)
43 1deq_A Fibrinogen (alpha chain 57.1 1.8E+02 0.006 30.9 14.0 53 455-511 139-191 (390)
44 2v4h_A NF-kappa-B essential mo 55.2 1.2E+02 0.004 27.2 11.4 69 442-510 37-108 (110)
45 1x79_B RAB GTPase binding effe 54.9 1.2E+02 0.004 27.1 12.3 95 415-512 6-104 (112)
46 3jsv_C NF-kappa-B essential mo 54.8 1E+02 0.0034 26.9 9.8 49 391-439 6-57 (94)
47 3r2p_A Apolipoprotein A-I; amp 54.8 1.2E+02 0.0042 27.7 11.3 78 362-439 85-172 (185)
48 3ghg_A Fibrinogen alpha chain; 53.3 1.4E+02 0.0046 33.1 12.8 20 413-432 140-159 (562)
49 2e7s_A RAB guanine nucleotide 52.7 54 0.0018 30.1 8.3 66 464-529 67-133 (135)
50 3mq9_A Bone marrow stromal ant 50.8 2.1E+02 0.0073 28.9 14.2 49 479-530 419-467 (471)
51 1deq_A Fibrinogen (alpha chain 50.7 2.4E+02 0.0081 30.0 13.7 39 476-514 118-156 (390)
52 3jsv_C NF-kappa-B essential mo 50.2 1E+02 0.0034 26.9 9.1 80 434-513 7-89 (94)
53 3s84_A Apolipoprotein A-IV; fo 50.1 2E+02 0.0068 28.4 26.0 80 324-406 49-129 (273)
54 3iv1_A Tumor susceptibility ge 48.5 70 0.0024 26.9 7.7 56 391-446 11-77 (78)
55 3sja_C Golgi to ER traffic pro 46.4 28 0.00096 28.5 4.8 33 314-346 27-59 (65)
56 4e61_A Protein BIM1; EB1-like 46.2 60 0.002 28.8 7.3 44 490-533 9-52 (106)
57 3r2p_A Apolipoprotein A-I; amp 45.3 1.2E+02 0.0041 27.8 9.6 16 324-339 94-109 (185)
58 1s1c_X RHO-associated, coiled- 45.1 57 0.0019 27.1 6.5 48 384-431 10-58 (71)
59 3q8t_A Beclin-1; autophagy, AT 44.0 1.5E+02 0.0051 25.2 14.0 86 413-513 9-95 (96)
60 1uix_A RHO-associated kinase; 44.0 74 0.0025 26.4 7.0 48 384-431 8-58 (71)
61 2v66_B Nuclear distribution pr 42.1 1.8E+02 0.0063 25.7 13.1 90 281-385 3-96 (111)
62 2l7b_A Apolipoprotein E, APO-E 41.6 2.9E+02 0.0099 27.8 13.2 11 426-436 257-267 (307)
63 1i6z_A BAG-family molecular ch 40.8 2.2E+02 0.0075 26.2 12.5 105 268-385 10-126 (135)
64 2v4h_A NF-kappa-B essential mo 40.1 1.1E+02 0.0038 27.3 8.0 75 267-341 31-108 (110)
65 1zhc_A Hypothetical protein HP 39.8 66 0.0023 26.3 6.2 63 256-322 2-64 (76)
66 3i00_A HIP-I, huntingtin-inter 39.2 1.4E+02 0.0049 26.5 8.7 88 329-420 14-118 (120)
67 2jee_A YIIU; FTSZ, septum, coi 36.2 2E+02 0.0068 24.4 10.9 73 436-508 6-78 (81)
68 1u2m_A Histone-like protein HL 35.4 29 0.00099 30.2 3.6 51 325-375 59-109 (143)
69 3iox_A AGI/II, PA; alpha helix 34.2 5E+02 0.017 28.4 15.0 18 299-316 6-23 (497)
70 3s84_A Apolipoprotein A-IV; fo 33.8 3.6E+02 0.012 26.6 26.6 133 323-464 70-212 (273)
71 2efr_A General control protein 33.7 2.9E+02 0.01 25.6 22.1 153 282-477 1-153 (155)
72 1a92_A Delta antigen; leucine 32.5 56 0.0019 25.6 4.3 26 318-343 6-31 (50)
73 2xs1_A Programmed cell death 6 32.4 4.6E+02 0.016 28.8 13.2 132 392-531 439-581 (704)
74 2w6a_A ARF GTPase-activating p 31.1 51 0.0018 26.8 4.0 43 260-302 13-55 (63)
75 2w6b_A RHO guanine nucleotide 29.0 1.7E+02 0.0058 23.4 6.6 37 323-359 14-50 (56)
76 3uun_A Dystrophin; triple heli 26.8 2.4E+02 0.0082 22.4 14.2 101 431-531 4-114 (119)
77 1s94_A S-syntaxin; three helix 26.7 3.5E+02 0.012 24.3 12.8 111 279-412 41-151 (180)
78 3ol1_A Vimentin; structural ge 26.5 3.2E+02 0.011 23.8 12.4 43 362-404 16-58 (119)
79 1m1j_C Fibrinogen gamma chain; 26.4 5.9E+02 0.02 26.8 13.4 20 422-441 31-50 (409)
80 3hnw_A Uncharacterized protein 26.1 3.6E+02 0.012 24.2 11.2 57 452-508 77-133 (138)
81 2xdj_A Uncharacterized protein 26.1 2.9E+02 0.0099 23.1 10.2 54 479-532 14-67 (83)
82 3nmd_A CGMP dependent protein 26.0 2.1E+02 0.0072 23.8 7.0 32 289-320 34-65 (72)
83 4etp_A Kinesin-like protein KA 25.1 1.3E+02 0.0046 31.1 7.0 49 487-535 12-60 (403)
84 3m91_A Proteasome-associated A 24.9 1.5E+02 0.005 23.1 5.5 38 426-463 13-50 (51)
85 2eqb_B RAB guanine nucleotide 24.9 3.5E+02 0.012 23.6 13.6 47 462-508 45-92 (97)
86 1m1j_B Fibrinogen beta chain; 24.7 6.7E+02 0.023 26.9 16.0 104 364-480 87-198 (464)
87 3bas_A Myosin heavy chain, str 24.5 3E+02 0.01 22.8 11.8 53 320-376 32-87 (89)
88 3sjb_C Golgi to ER traffic pro 23.3 82 0.0028 27.4 4.2 32 314-345 44-75 (93)
89 4hpq_C ATG17, KLTH0D15642P; au 23.2 6.8E+02 0.023 26.4 22.6 165 358-530 211-385 (413)
90 1x79_B RAB GTPase binding effe 23.1 4E+02 0.014 23.7 11.9 94 303-396 7-107 (112)
91 3s9g_A Protein hexim1; cyclin 23.0 2.2E+02 0.0076 25.1 6.9 26 333-358 68-93 (104)
92 2l7b_A Apolipoprotein E, APO-E 22.6 1.9E+02 0.0065 29.1 7.4 79 362-440 110-198 (307)
93 3a7p_A Autophagy protein 16; c 22.0 4.9E+02 0.017 24.3 11.2 67 463-529 67-133 (152)
94 3cve_A Homer protein homolog 1 21.6 3.5E+02 0.012 22.4 7.7 48 279-326 5-52 (72)
95 3lay_A Zinc resistance-associa 20.8 3E+02 0.01 25.8 7.8 45 503-553 114-158 (175)
96 3oja_A Leucine-rich immune mol 20.6 6.7E+02 0.023 25.4 16.7 49 469-517 426-478 (487)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.43 E-value=0.00087 Score=60.07 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
+..+++.+...+..++.+...+..........+-.+-.........+..+...+..+..-+..+..+...+...|
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.35 E-value=0.0013 Score=58.86 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 497 AESELITTCRQLAALLKLCRTLQTE 521 (565)
Q Consensus 497 ~~kEle~l~kKieKLE~LCRALQ~E 521 (565)
+...+..+...+..|..-+..++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (284)
T 1c1g_A 235 AETRAEFAERSVTKLEKSIDDLEDE 259 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.81 E-value=0.0001 Score=84.73 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q psy825 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIRE 344 (565)
Q Consensus 273 EEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKE 344 (565)
+..+..+..+..++...+.++...+..++.+...+..++..++.++.........++.-+..|+.+...+.+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~ 927 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666666666665554444333444444444444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.38 E-value=0.00044 Score=79.61 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
...++..+...+..++.+...+..+.+..
T Consensus 1079 l~~el~~le~~l~~le~el~~l~~~le~l 1107 (1184)
T 1i84_S 1079 LQAQIAELKAQLAKKEEELQAALARLEDE 1107 (1184)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.16 E-value=0.076 Score=51.47 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=106.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy825 386 RGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK 465 (565)
Q Consensus 386 ~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKK 465 (565)
-.+-..|...+..+-.++..-...+..+..++..+...-..++..+.-|..+-.. .++|.-|..+..||+.+...
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-----v~~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-----IKSERELRSLNIEEDIAKER 105 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777777777766667777777777666543 34899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHh
Q psy825 466 INKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELIT----TCRQLAALLKLCRTLQTERAE-----------MLAKLN 530 (565)
Q Consensus 466 iKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~----l~kKieKLE~LCRALQ~ER~~-----------L~~kLk 530 (565)
+..||.+...+-.+.+.....+-.+.........++.. +...+..|..=...|..+|.. .|..|+
T Consensus 106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir 185 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999888887776666666666654 444455666667777788874 556666
Q ss_pred h-cCCc
Q psy825 531 G-AGGY 535 (565)
Q Consensus 531 ~-~~g~ 535 (565)
. .+|.
T Consensus 186 ~~~~g~ 191 (256)
T 3na7_A 186 RWAKNT 191 (256)
T ss_dssp HHHGGG
T ss_pred HhCCCc
Confidence 5 3554
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.92 E-value=4 Score=52.60 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLC 515 (565)
Q Consensus 453 ~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LC 515 (565)
..++.+.+.+......|+.+......|.+.+.+-|-.+..|+.+|...+..+..+...|-+=|
T Consensus 2045 ~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2045 ATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 334445556666778889999999999999999999999999999999999999999998744
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.19 E-value=0.6 Score=48.60 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTC 505 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~ 505 (565)
|+++.+.+...+..|+++...|.++.+.....+.++..|.+.+..++..+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666677777777666666666666655554444444333
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.28 E-value=3 Score=35.83 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
..|+.+...+.+++++.+.-+..-+.-...+-.|+..+.++|..||-+..........++..|-..-..++....++..+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999999999999999999998888888877776655566667789999
Q ss_pred HHHHHHHH
Q psy825 505 CRQLAALL 512 (565)
Q Consensus 505 ~kKieKLE 512 (565)
.++|+-|+
T Consensus 92 ~RriqllE 99 (101)
T 3u1c_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998876
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.56 E-value=1.4 Score=38.86 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAAL 511 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKL 511 (565)
..|..||++++.+..++++.....|.||-.|...+..|+-|...++........+|.++- .....++..++.++..|
T Consensus 11 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e---~~~~~~l~~~q~~i~~l 87 (129)
T 3tnu_B 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE---QRGELALKDARNKLAEL 87 (129)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999988777766665442 33455666777777766
Q ss_pred HHHHHHHHH
Q psy825 512 LKLCRTLQT 520 (565)
Q Consensus 512 E~LCRALQ~ 520 (565)
+.=.+.+..
T Consensus 88 E~eL~~~r~ 96 (129)
T 3tnu_B 88 EEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 654444433
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.52 E-value=3.7 Score=34.99 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
..|+.+..-+.++.++.+.-+...++-...+-.||..+.++|..||-+......++..++..|-..-..++....++..|
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888889999999999999999999999999999999999999999888888888877766655666667788888
Q ss_pred HHHHHHHH
Q psy825 505 CRQLAALL 512 (565)
Q Consensus 505 ~kKieKLE 512 (565)
.++|+-|+
T Consensus 92 nRriqllE 99 (101)
T 3u59_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88888775
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.46 E-value=2 Score=44.79 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q psy825 286 LYHDFNILSLLSKQNEKQIALLQNEKEILTLENS----KQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVS 361 (565)
Q Consensus 286 Ll~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~----KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELs 361 (565)
+..+++.++......++....+..+.+..+.... .....+..|+..-..++.....+..+..+ ..+.....++..
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 539 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQA-RRTEADAKQKET 539 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHH-HHHhhhhhhcch
Confidence 3334444444444444433334334333333222 22223455666666665555555544443 222333333444
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHH
Q psy825 362 VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLI 401 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIE 401 (565)
..++..+..+..++++....-..+.+++..+..+++.+.+
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777667777777777777777765
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.51 E-value=10 Score=36.53 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 464 SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 464 KKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
+-...|.+|...++.+.......|+++.+........++.+...+..++.-..++++++..-...+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999888888888777766666666544433
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.38 E-value=2.2 Score=37.80 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy825 432 SMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAAL 511 (565)
Q Consensus 432 niY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKL 511 (565)
..|..||++++....+.++...+.|.||-.|...+..|+-|...++........+|.++= .....++..++..+..|
T Consensus 13 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~~l 89 (131)
T 3tnu_A 13 EWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIGSV 89 (131)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999887776666665432 23455666677777666
Q ss_pred HHHHHHHHHH
Q psy825 512 LKLCRTLQTE 521 (565)
Q Consensus 512 E~LCRALQ~E 521 (565)
+.=.+.+..+
T Consensus 90 E~eL~~~r~e 99 (131)
T 3tnu_A 90 EEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6554444433
No 14
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=89.94 E-value=13 Score=35.75 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhhhhHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-c
Q psy825 305 ALLQNEKEILTLENSKQEL-TREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK-T 382 (565)
Q Consensus 305 dQLqKEKD~lqsEl~KaIl-aKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-n 382 (565)
.+|..+.+.++..+.+-+- +|.+|+-...||+.....=.++.+.++.- --.++-.++...+.+++.+|....+. .
T Consensus 73 ~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P---~~eel~~~~~~~~eel~~~L~p~~eelr 149 (243)
T 2a01_A 73 DNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEP---LRAELQEGARQKLHELQEKLSPLGEEMR 149 (243)
T ss_dssp HHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHCCSCCSSTHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 4566666667777776665 88888888888887766555555443322 11222333444444555554444333 2
Q ss_pred chhhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHH
Q psy825 383 MKLRGDNLDMAKKFRELLIQYDEK-EQELLDYKAKYL--------EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFA 453 (565)
Q Consensus 383 ~KL~~EN~eL~eKLKsLIEQYElR-Eehf~Klq~Qv~--------~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~ 453 (565)
.++...-.+|+++|--+++.|..+ +.|+..++..+. .+...=..||..|..|.+-+. .+=.-++.
T Consensus 150 ~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk------~~l~p~~e 223 (243)
T 2a01_A 150 DRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLR------QGLLPVLE 223 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSS------SCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHhHHHHH
Confidence 344444446778888777777766 445555555443 244455677788888877665 22234444
Q ss_pred HHHHHHHHHH
Q psy825 454 GFKSEMESMS 463 (565)
Q Consensus 454 TFKkEMEKMS 463 (565)
.|+..+..+-
T Consensus 224 ~~~~~l~~~~ 233 (243)
T 2a01_A 224 SFKVSFLSAL 233 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.83 E-value=14 Score=35.08 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=20.6
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy825 314 LTLENSKQELTREKLENLCRELQKQNKAIREEN 346 (565)
Q Consensus 314 lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEn 346 (565)
.++|+.+++. =+|..|||||-.+..+...-
T Consensus 35 ~~tEl~k~~~---~~E~~~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 35 SHTEMSKSIS---QLESLNRELQERNRILENSK 64 (168)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5677776643 47888888888777665443
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.13 E-value=15 Score=34.72 Aligned_cols=70 Identities=16% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy825 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQ 348 (565)
Q Consensus 279 L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~ 348 (565)
+.+.++.+..-++.|+-.+..++..-+.|+++...|++.+.---..+..-..+-+|||..+..+.+|..+
T Consensus 39 l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 39 MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777777777777777777777777777777777888888877777777654
No 17
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.74 E-value=5.6 Score=32.66 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 459 MEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
|+..-+||..|.-+...|.-+++.++..+-..-........++..+++++..|+.=.-..+..-.....+|....
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999988888888889999999999999999999888888888888887653
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.40 E-value=15 Score=42.70 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 452 FAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQ 519 (565)
Q Consensus 452 F~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ 519 (565)
-.....||+.+.+.+.++.+|...+..+++.... +|.+.-..+.++...++.+++.|+.+....+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665554442 3334444555566666666666665444443
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.01 E-value=16 Score=37.38 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 427 LRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489 (565)
Q Consensus 427 LR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLle 489 (565)
+...+.-|.+-+.+.|.-..+ ++++|+.|...+.+|+.++..++.-.+..+..|.+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNN-------AIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 455555566666666655544 55555555555555555555555554444444443
No 20
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=83.45 E-value=3.8 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 433 MYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 433 iY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
.|..||++++.....+++.....|.||-.+...+..|+-|...++
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999999999999999988876
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.22 E-value=33 Score=32.88 Aligned_cols=77 Identities=10% Similarity=0.146 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQT----LSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL 488 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDT----L~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl 488 (565)
+..++..+...-..|...+..|..||...+.- ++.=..=.++++...+.|.+.|..||-.|..+-+..-.+...|-
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 55666667777777888888888888876544 55555667788999999999999999999999887766666664
Q ss_pred H
Q psy825 489 E 489 (565)
Q Consensus 489 e 489 (565)
+
T Consensus 134 D 134 (189)
T 2v71_A 134 D 134 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.43 E-value=1.3e+02 Score=39.28 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
..++......+..|+.....++.+|+. ++.|++.+..+++....++++=+.|+..|-.|+.-+...+....
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~-------~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYAT-------LIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 345555666677778888888888775 56788999999999999999999999999999987666555443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.27 E-value=13 Score=40.85 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q psy825 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETA--------TWKQRWEKSHEAYLEM 490 (565)
Q Consensus 419 ~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~--------~wKrK~E~sNkaLleM 490 (565)
.|.++|..|..-|+--...|++++ .+++++|.-|+.=|+.+..++...- +|. .|++++.-....|..-
T Consensus 54 lLdkqErDltkrINELKnqLEdls---KnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQ---KNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888775 6677777777777777766555443 222 3455555444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy825 491 SNEKTKAESELITTCRQLAALLKL 514 (565)
Q Consensus 491 aEER~k~~kEle~l~kKieKLE~L 514 (565)
+.--..++.-|+.+..+|++||.=
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433344555555666666666643
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.23 E-value=40 Score=32.37 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=40.5
Q ss_pred cCCCChHHHHHHH-------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q psy825 267 NDSQTPDEKFKII-------SQKYSELYHDFNILSL-----------LSKQNEKQIALLQNEKEILTLENSKQELTREKL 328 (565)
Q Consensus 267 n~L~TpEEKle~L-------~KKYsELl~E~Rrlqk-----------q~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKL 328 (565)
++.+||++-+.+. +.+|.++..++..++. ++.+.+++...|+.....+..|+. ..|+||
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e---~~k~K~ 79 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVE---ALKEKL 79 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4677888888886 4466666555544433 333444444444444444444444 245666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy825 329 ENLCRELQKQNKAIREE 345 (565)
Q Consensus 329 EsLCRELQKqNK~LKEE 345 (565)
+.++.|...+...+..|
T Consensus 80 ~~~~~e~~~~~~~Lq~e 96 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDD 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666655555544444
No 25
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.28 E-value=25 Score=29.44 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 470 EKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 470 EKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
+.+...++..++......-++-.....+..+...+..++.-.+..|..|.+.+.+|..+|.+.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444555558888999999999999998888764
No 26
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=79.16 E-value=48 Score=32.03 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=82.4
Q ss_pred hcCCCC--hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy825 266 FNDSQT--PDEKFK-IISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAI 342 (565)
Q Consensus 266 Ln~L~T--pEEKle-~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~L 342 (565)
|.||.+ |++++= .-..+-++....+...+..+..++++... |-..|. ..++..+
T Consensus 8 LtgC~~~~~e~~~y~~~leka~~~Ek~~~~~qkkL~~LEkk~q~-----------LY~qI~------------~~~~~~v 64 (199)
T 2ap3_A 8 PTSTTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKK-----------LTEDVN------------SKDTAVR 64 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT-----------TTTGGG------------CSSHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHH------------HhhhHHH
Confidence 455554 565554 44455556665555566655555553333 333333 2334444
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 343 REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422 (565)
Q Consensus 343 KEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~e 422 (565)
..-+.. +-.--..|..+..+=..+|..-+..+..-...-.++ ++..++...+.|.+-|+-|=..|+.|-.-+.....
T Consensus 65 ~~~adq-a~~nv~eRek~l~kEk~si~~s~kef~~~k~~i~kI--eD~~~Kkqa~~l~~~~k~RY~~~~~l~~~Y~k~l~ 141 (199)
T 2ap3_A 65 GKAVKD-LIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNI--DNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVN 141 (199)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332 223333455555444555555555554433333444 56679999999999999999998885555544444
Q ss_pred HHH--------------HHHHHHHHHHHhHHHHH
Q psy825 423 TEN--------------GLRKQISMYGEKYDEFQ 442 (565)
Q Consensus 423 tE~--------------eLR~QLniY~EKFeEFQ 442 (565)
.|. +|..|+..+.+.|++|+
T Consensus 142 ~EKeLy~~Lk~k~~~~~~l~eki~~vN~~y~~~~ 175 (199)
T 2ap3_A 142 SEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLK 175 (199)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 444 45556666666666655
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.70 E-value=33 Score=29.34 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 459 MEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
|+..-+||..|.-+...|..+.+.+...+-..-..+.....++..+++++..|+.=.-.++..=.....+|...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998888888889999999999999888776666655544444444443
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.17 E-value=35 Score=28.93 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 459 MEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
|+..-+||.-|--+...|--+.+.+...+-..-........++..+++++..|+.=.-..+..=.....+|..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998887777778888899999999987777666555554455444443
No 29
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.90 E-value=14 Score=31.15 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q psy825 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340 (565)
Q Consensus 276 le~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK 340 (565)
++.|..-|++|+.-...+.---..+=.+++.|.-|++.++.|+.....++.||+.=-+||..+-+
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999998888888888888999999999999999999999999999987777765544
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.31 E-value=31 Score=28.20 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 425 NGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL 488 (565)
Q Consensus 425 ~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl 488 (565)
..|+..+..+.+++.+.+.-|...+..+..+-.|+..+.++|..||-+......+...++.-|-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888889999999999999999999999999999999999999999888887776665553
No 31
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.68 E-value=53 Score=28.93 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLE 470 (565)
.+.+.|+.+-+.|+.-+.....|..+...+.+.-..|..||....+-+.+.++.+ +.+.+.-..||
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~--------------~~L~~~k~eLe 82 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC--------------DQLIKNKIQLE 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHH
Confidence 4566777777777665555566777777788778888888888777666555332 23344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 471 KETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 471 KEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~ 513 (565)
.....+..+.+.--.....+..++.++..++..+.++++-|+.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666778888888888888888877764
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.12 E-value=47 Score=28.16 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 447 RSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKT 495 (565)
Q Consensus 447 KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~ 495 (565)
=|.++|...-.=+..+-..|.-|.-|...+|.+....+...-.+...|.
T Consensus 3 MS~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~ 51 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 51 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3788899888888889898988888999988887665555544434333
No 33
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=68.67 E-value=64 Score=30.23 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-hhHHHHHhHHHHHHHHHHHHHHH
Q psy825 269 SQTPDEKFKIISQKYSELYHD-FNILSLLSKQNEKQIALLQNEKEILTLEN----S-KQELTREKLENLCRELQKQNKAI 342 (565)
Q Consensus 269 L~TpEEKle~L~KKYsELl~E-~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl----~-KaIlaKsKLEsLCRELQKqNK~L 342 (565)
-.++-+-+...+.-|.+-+.. ...+..++ ....+-++...+..+. + ....++.+|.=+.-||+.....
T Consensus 22 ~~s~~e~v~~~~~~y~~~l~~~a~~~~eqL-----~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~- 95 (191)
T 1nfn_A 22 SGQRWELALGRFWDYLRWVQTLSEQVQEEL-----LSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSK- 95 (191)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCCHHHHHHH-----TSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHH-
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-
Confidence 345555555555555555554 22333333 0012222322222222 2 2344777777777666663222
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-cchhhhccHHHHHHHHHHHHHHH
Q psy825 343 REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK-TMKLRGDNLDMAKKFRELLIQYD 404 (565)
Q Consensus 343 KEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-n~KL~~EN~eL~eKLKsLIEQYE 404 (565)
.-+.-|.. .+.-|.++..+|..+.+. ..++...-.+++.+|.-+++.|-
T Consensus 96 ---------~~e~lr~~----l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr 145 (191)
T 1nfn_A 96 ---------ELQAAQAR----LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLR 145 (191)
T ss_dssp ---------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 22223333 344456666666666554 34455555579999999998553
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.15 E-value=75 Score=28.22 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 416 KYLEMQKTENGLRKQISMYGEKYDEFQQ----TLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEM 490 (565)
Q Consensus 416 Qv~~L~etE~eLR~QLniY~EKFeEFQD----TL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleM 490 (565)
+...|...-..|...+..|..||.+.+. +++.-..-+++++..=+.|.+.+..||-.|..+-+..-.+...|-+|
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4556777777888999999999999875 46666677888888999999999999999999988877777777654
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.74 E-value=2.2e+02 Score=33.35 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 461 SMSSKINKLEKETATWKQRWEKSHEAYLEMSN 492 (565)
Q Consensus 461 KMSKKiKKLEKEn~~wKrK~E~sNkaLleMaE 492 (565)
.+..++..|++|+..|+..-+..+..+.+..+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777666665544444433
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.42 E-value=64 Score=29.17 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy825 458 EMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALL 512 (565)
Q Consensus 458 EMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE 512 (565)
+.+.+...+..+++|...+|.......-.+=.+-.+...+.+++..++.++.+|+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444554444443333222222223333333334445555555554
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=59.78 E-value=91 Score=27.40 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 410 LLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483 (565)
Q Consensus 410 f~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~s 483 (565)
+......+..|......|..+|....+++++..+ ....+...-++|+.+...|+..++..
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee--------------~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE--------------MNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777777777777777776553 34455555666666666666655543
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.74 E-value=16 Score=31.99 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy825 448 SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEK----SHE------------AYLEMSNEKTKAESELITTCRQLAAL 511 (565)
Q Consensus 448 SNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~----sNk------------aLleMaEER~k~~kEle~l~kKieKL 511 (565)
||+-+..++.+++.+..-.-+|..+...|..+.+. .+. +...+| ++....+++.++..+++|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a--~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA--RQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH--HHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777776666 111 112333 333568888888888888
Q ss_pred HHHHHHHHH
Q psy825 512 LKLCRTLQT 520 (565)
Q Consensus 512 E~LCRALQ~ 520 (565)
....|+|+.
T Consensus 88 r~~v~~lEe 96 (100)
T 1go4_E 88 RGLLRAMER 96 (100)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHHHhc
Confidence 888887764
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.65 E-value=1.2e+02 Score=28.21 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 463 SSKINKLEKETATWKQ-RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 463 SKKiKKLEKEn~~wKr-K~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
.....+++.|...|.. =|+.+|..+..---+|.........+..++.--+.+...||.+=..|...+....
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778888888865 5999999999888888888889999999999999999999999888877666544
No 40
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=57.35 E-value=1.7e+02 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy825 502 ITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLI 539 (565)
Q Consensus 502 e~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~ 539 (565)
....-++..|..-=+.|++||.-|.++|.+.||.-.||
T Consensus 362 ~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~p~ 399 (406)
T 4dyl_A 362 QEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPPP 399 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 34455667777777899999999999999999877665
No 41
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=57.28 E-value=16 Score=35.27 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q psy825 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380 (565)
Q Consensus 323 laKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~ 380 (565)
.+|.+|.-+..+|+.....-.++...+..- --.++-+++...+.++..++....+
T Consensus 114 elr~~L~P~~eel~~~~~~~~eel~~~L~p---~~eelr~kl~~~veelk~~l~P~~e 168 (243)
T 2a01_A 114 LYRQKVEPLRAELQEGARQKLHELQEKLSP---LGEEMRDRARAHVDALRTHLAPYSD 168 (243)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHCCSCCS---STHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 478899999999988887666555443321 1124445666677777777665443
No 42
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=57.25 E-value=1.9e+02 Score=31.65 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy825 332 CRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL 411 (565)
Q Consensus 332 CRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~ 411 (565)
=++||...+.|.+|.+. .+--..--..+..+|-.-|.+|...|.-+......-..+-..|..-++++..=-+.....+.
T Consensus 92 E~~~~~Kl~eLE~e~k~-d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~ 170 (526)
T 3iyk_A 92 ERGIQAKLKELEDEQRN-ELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMR 170 (526)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46677777777766653 22223334567788999999998877544332111112223355556665544444333443
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHH
Q psy825 412 DYKAKYLEMQKTENGLRKQ-----ISMYGEKYDEFQQTLSRS-NEIFAGFKSEMESMSSKI 466 (565)
Q Consensus 412 Klq~Qv~~L~etE~eLR~Q-----LniY~EKFeEFQDTL~KS-NEvF~TFKkEMEKMSKKi 466 (565)
. +...+..|..+|.+ ++.|..+|+.+.+++.-= .-+-..-=+||-.|+--+
T Consensus 171 ~----L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dmsaeI 227 (526)
T 3iyk_A 171 R----LATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADV 227 (526)
T ss_pred H----HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHH
Confidence 3 23334455555544 788999999887776542 445555555666665544
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.08 E-value=1.8e+02 Score=30.90 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy825 455 FKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAAL 511 (565)
Q Consensus 455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKL 511 (565)
.+.-++....+|++||......++=|- .++- .+-++..-.+.++..++|+..+
T Consensus 139 Lq~~l~~q~~kiqRLE~~Id~c~~~C~---~sC~-~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDIDIKIRSCK---GSCS-RALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---cccc-hhhhhhccHHHHHHHHHHHHhh
Confidence 345566777889999999855544332 2221 2223443444555566664443
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.17 E-value=1.2e+02 Score=27.18 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSS---KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAA 510 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSK---KiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieK 510 (565)
+..|..=..-++.++.|+..+.. .|.-|+-....++.-|..--.+==.+..++..+..++..++.++..
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33444444445555666666555 5666666666777666654444444555555555555555544443
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.86 E-value=1.2e+02 Score=27.10 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q psy825 415 AKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAY----LEM 490 (565)
Q Consensus 415 ~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaL----leM 490 (565)
.++..|...-..|+.||.--++=+.+.++.++.+++ ..+.++..+.-.+..-|.....++..|..+-.++ ..+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E---~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE---DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666678888888888888888888877775 5677888888888888888888888877665554 445
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy825 491 SNEKTKAESELITTCRQLAALL 512 (565)
Q Consensus 491 aEER~k~~kEle~l~kKieKLE 512 (565)
+..|...-.++..++.-.+-|-
T Consensus 83 t~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 83 MQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHhhccchh
Confidence 5666655555555555555443
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=54.78 E-value=1e+02 Score=26.92 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHH
Q psy825 391 DMAKKFRELLIQYDEKEQELLDYKAKYLEM---QKTENGLRKQISMYGEKYD 439 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~Klq~Qv~~L---~etE~eLR~QLniY~EKFe 439 (565)
.|..+|...-+=+-.+..+++.++..+..+ .++=..|++|+.+|.+-|.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777888888877655443 3666789999999998886
No 47
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=54.78 E-value=1.2e+02 Score=27.72 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhccccc-hhhhccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HH-HHHHHHHHHHHHH
Q psy825 362 VKLENTLSEISNQVQESNNKTM-KLRGDNLDMAKKFRELLIQYDEKE-QELLDYKAK-------YL-EMQKTENGLRKQI 431 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n~-KL~~EN~eL~eKLKsLIEQYElRE-ehf~Klq~Q-------v~-~L~etE~eLR~QL 431 (565)
..++.-|.++..+|..+...-. .+...-..|+.+|.-++++|-.+- .+++.++.+ +. .+.+.=..||.+|
T Consensus 85 ~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l 164 (185)
T 3r2p_A 85 QEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666655432 233333468888888888775542 233332222 21 2334445789999
Q ss_pred HHHHHhHH
Q psy825 432 SMYGEKYD 439 (565)
Q Consensus 432 niY~EKFe 439 (565)
..|++.|.
T Consensus 165 ~Py~ee~k 172 (185)
T 3r2p_A 165 APYSDELR 172 (185)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 99988776
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.34 E-value=1.4e+02 Score=33.05 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQIS 432 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLn 432 (565)
+..|+..|+..|...-.||.
T Consensus 140 Ledq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788889999998888875
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.67 E-value=54 Score=30.11 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 464 SKINKLEKETATWKQ-RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 464 KKiKKLEKEn~~wKr-K~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
....+++.|...|.. =|+.+|..+..---+|.........+..++.--+.|...||.|=..|...|
T Consensus 67 ~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 67 EEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366778888888865 599999999988778888888888999999988999999998877665544
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.76 E-value=2.1e+02 Score=28.93 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy825 479 RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 479 K~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk 530 (565)
....||.+++.+.+- ++++..+..++++-||+=+..|..+-..+...++
T Consensus 419 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 419 QAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666655432 3333344445566666555554444444444443
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.69 E-value=2.4e+02 Score=29.96 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy825 476 WKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKL 514 (565)
Q Consensus 476 wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~L 514 (565)
|++++.-....|..-+..=..+..-|+.+..++++||.-
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443332234555677777778888753
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.24 E-value=1e+02 Score=26.91 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy825 434 YGEKYDEFQQTLSRSNEIFAGFKSEMESMS---SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAA 510 (565)
Q Consensus 434 Y~EKFeEFQDTL~KSNEvF~TFKkEMEKMS---KKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieK 510 (565)
-..+...-+.+|..-...++.++.+|..+. -.|--|.-....++.=|..--.+==.|..++..+..++..++.++.+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455566777777778888888888776 44555566666666655554444444555555555555555555555
Q ss_pred HHH
Q psy825 511 LLK 513 (565)
Q Consensus 511 LE~ 513 (565)
|..
T Consensus 87 L~~ 89 (94)
T 3jsv_C 87 LKV 89 (94)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 53
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=50.09 E-value=2e+02 Score=28.39 Aligned_cols=80 Identities=10% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-cchhhhccHHHHHHHHHHHHH
Q psy825 324 TREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK-TMKLRGDNLDMAKKFRELLIQ 402 (565)
Q Consensus 324 aKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-n~KL~~EN~eL~eKLKsLIEQ 402 (565)
+|.+|+-+.-||+.....=.++.+.++.- -..++-+++...+.+++.+|..+.+. ..++...-.+|+.+|--++++
T Consensus 49 lr~~L~Py~~el~~~~~~~~eelr~kL~p---~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~ee 125 (273)
T 3s84_A 49 LQQRLEPYADQLRTQVNTQAEQLRRQLTP---YAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADE 125 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHH
Confidence 66677777777766655544444433322 12233334445555555555544433 233444444566666666666
Q ss_pred HHHH
Q psy825 403 YDEK 406 (565)
Q Consensus 403 YElR 406 (565)
|..+
T Consensus 126 lr~k 129 (273)
T 3s84_A 126 FKVK 129 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.51 E-value=70 Score=26.94 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy825 391 DMAKKFRELLIQYDEKEQELL-----------DYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLS 446 (565)
Q Consensus 391 eL~eKLKsLIEQYElREehf~-----------Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~ 446 (565)
.|+-+|+..+.||..==+.+. ++...+..|...+..|..-+.+|.+|-+++..+|.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777654322221 15566677778888888888888888888776553
No 55
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=46.44 E-value=28 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.9
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy825 314 LTLENSKQELTREKLENLCRELQKQNKAIREEN 346 (565)
Q Consensus 314 lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEn 346 (565)
.|.|..|.+-++-|+.+|-.||...|+.|-.|+
T Consensus 27 aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 27 AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 577899999999999999999999999987765
No 56
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.23 E-value=60 Score=28.77 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy825 490 MSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAG 533 (565)
Q Consensus 490 MaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~ 533 (565)
+..+-.....++..+..++..|.--+..|..||.-++.+|+...
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556777888888888888888888888888888765
No 57
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=45.35 E-value=1.2e+02 Score=27.84 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.5
Q ss_pred HHHhHHHHHHHHHHHH
Q psy825 324 TREKLENLCRELQKQN 339 (565)
Q Consensus 324 aKsKLEsLCRELQKqN 339 (565)
+|.+|+-.+.||+...
T Consensus 94 ~r~~l~P~~~e~~~~~ 109 (185)
T 3r2p_A 94 VKAKVQPYLDDFQKKW 109 (185)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 58
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.07 E-value=57 Score=27.10 Aligned_cols=48 Identities=31% Similarity=0.464 Sum_probs=37.2
Q ss_pred hhhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 384 KLRGDNLDMAKKFRELLIQYD-EKEQELLDYKAKYLEMQKTENGLRKQI 431 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYE-lREehf~Klq~Qv~~L~etE~eLR~QL 431 (565)
-+..|+.+|..+++.+-+.|. +++.++..+..++.....+|.-|+.|-
T Consensus 10 ~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 10 ILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999998887 556677767777777778888888773
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.04 E-value=1.5e+02 Score=25.20 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy825 413 YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK-ETATWKQRWEKSHEAYLEMS 491 (565)
Q Consensus 413 lq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEK-En~~wKrK~E~sNkaLleMa 491 (565)
+...+..+...|..|..+|..-..-...+ -.+|........+|.. |...|+ .|-.-...++++.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l--------------~~el~~le~E~~~L~~eE~~~w~-eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVV--------------AENLEKVQAEAERLDQEEAQYQR-EYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHH
Confidence 44556666777777777776554444433 3556666666666655 444454 4667788889999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q psy825 492 NEKTKAESELITTCRQLAALLK 513 (565)
Q Consensus 492 EER~k~~kEle~l~kKieKLE~ 513 (565)
.++.-..-++.-...++++|.+
T Consensus 74 dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 74 DELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998863
No 60
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.96 E-value=74 Score=26.43 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=36.8
Q ss_pred hhhhccHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy825 384 KLRGDNLDMAKKFRELLIQYD-EKEQELL--DYKAKYLEMQKTENGLRKQI 431 (565)
Q Consensus 384 KL~~EN~eL~eKLKsLIEQYE-lREehf~--Klq~Qv~~L~etE~eLR~QL 431 (565)
-+..|+.+|..+++.+-+.|. +++.++. .+..++.....+|.-|+.|-
T Consensus 8 ~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QA 58 (71)
T 1uix_A 8 NLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999888 4555555 57777777788888888773
No 61
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.07 E-value=1.8e+02 Score=25.72 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 281 QKYSELYHDFNILSLLSKQNEKQIALLQNE----KEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356 (565)
Q Consensus 281 KKYsELl~E~Rrlqkq~k~~qKk~dQLqKE----KD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeK 356 (565)
|+..+|...+.+|.-++-.++.++.+.+.+ .-.++.|+......+..|-.=+|+|-..|..|- -..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE----------R~~ 72 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE----------RAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH----------HHH
Confidence 344455555555555555555555555444 333566666666666777777777777776543 122
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchh
Q psy825 357 RKNVSVKLENTLSEISNQVQESNNKTMKL 385 (565)
Q Consensus 357 RkELseKFQ~tL~DIq~qMEE~~~~n~KL 385 (565)
|- --.+|.|+...+..--+++.=|
T Consensus 73 R~-----t~~SLeD~E~k~n~aiErnalL 96 (111)
T 2v66_B 73 RA-----TIVSLEDFEQRLNQAIERNAFL 96 (111)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHhhHHHHHHHHHHHHHHHHHH
Confidence 32 3567778877776555544444
No 62
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=41.65 E-value=2.9e+02 Score=27.83 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy825 426 GLRKQISMYGE 436 (565)
Q Consensus 426 eLR~QLniY~E 436 (565)
+|+.+|..|++
T Consensus 257 el~~kl~~~~e 267 (307)
T 2l7b_A 257 QIRLQAEAAQA 267 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHhHHH
Confidence 44444444433
No 63
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.84 E-value=2.2e+02 Score=26.19 Aligned_cols=105 Identities=22% Similarity=0.238 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy825 268 DSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENL 347 (565)
Q Consensus 268 ~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk 347 (565)
.-++|++ ++-.++..++.+......+++..+.....++. |.-+.++.--.-|..|+++.+.+-|+++
T Consensus 10 kK~~pee--e~~lKkL~dveksv~~~~k~l~~l~~el~~ie-----------kGFL~k~l~~ea~~kl~Krik~~~E~~M 76 (135)
T 1i6z_A 10 EKSNPEE--EVELKKLKDLEVSAEKIANHLQELNKELSGIQ-----------QGFLAKELQAEALCKLDRKVKATIEQFM 76 (135)
T ss_dssp CCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4467776 34344555555544444444444444333332 3334444444668889999999999998
Q ss_pred HhHHH------------HHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Q psy825 348 QKFRE------------EEEKRKNVSVKLENTLSEISNQVQESNNKTMKL 385 (565)
Q Consensus 348 ~r~~E------------EEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL 385 (565)
+.... ...+|+.++.+.|+.|+.-..-+..-.+.-.+|
T Consensus 77 k~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~ 126 (135)
T 1i6z_A 77 KILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYICQETERL 126 (135)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 456899998888888776655544433333333
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.10 E-value=1.1e+02 Score=27.33 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=48.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q psy825 267 NDSQTPDEKFKIISQKYSELYHDFNILSL---LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKA 341 (565)
Q Consensus 267 n~L~TpEEKle~L~KKYsELl~E~Rrlqk---q~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~ 341 (565)
..|.+.|+-++.-..-+.++..+..+... .+..++-+++.-..+...=++.+.|...=++.|..=-+-||++|..
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44556677777766666666666555555 5555666666666666666666677776677776666677777654
No 65
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=39.80 E-value=66 Score=26.30 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy825 256 HPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQE 322 (565)
Q Consensus 256 ~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaI 322 (565)
||....++..|..- ...++.|..+|.+|-.+..+++...--.. ....|.++|=.+..++..-+
T Consensus 2 Fpe~~d~I~~Lk~~---d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 2 FHEFRDEISVLKAN---NPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp CHHHHHHHHHSTTT---STTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHH
Confidence 34455566666543 34789999999999999888876543233 56667777755555555433
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.22 E-value=1.4e+02 Score=26.51 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHH---------
Q psy825 329 ENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFREL--------- 399 (565)
Q Consensus 329 EsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsL--------- 399 (565)
..|-..|++.+..++.+.... -..-..++..+.+.|+.+.+.++++.....+...+|..|+.-+..+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l----~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~ 89 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM----KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEK 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q ss_pred ----HHHHHHH----HHHHHHHHHHHHHH
Q psy825 400 ----LIQYDEK----EQELLDYKAKYLEM 420 (565)
Q Consensus 400 ----IEQYElR----Eehf~Klq~Qv~~L 420 (565)
+...|.| |+.|.+|+..+..|
T Consensus 90 ~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 90 AQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.20 E-value=2e+02 Score=24.38 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=52.8
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 436 EKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 436 EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
+=|++++.=+...=++..-.+-|++.+--+.-.|..++..++.-.+..+.-.-.+-+|+..|...+..+-.++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355555555555566667777888888888888888888888888777777777777777777666665554
No 68
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=35.40 E-value=29 Score=30.20 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy825 325 REKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQV 375 (565)
Q Consensus 325 KsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qM 375 (565)
.+-.+.+-+||+.....+..-......+-..++.++...+...|..+-..+
T Consensus 59 ~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~v 109 (143)
T 1u2m_A 59 GSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSV 109 (143)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333333344455555555555555544444
No 69
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.18 E-value=5e+02 Score=28.37 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy825 299 QNEKQIALLQNEKEILTL 316 (565)
Q Consensus 299 ~~qKk~dQLqKEKD~lqs 316 (565)
++|.++.+.|+|...++.
T Consensus 6 ~yq~~la~yq~elarvqk 23 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQK 23 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555444433
No 70
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=33.78 E-value=3.6e+02 Score=26.59 Aligned_cols=133 Identities=11% Similarity=0.225 Sum_probs=64.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-cchhhhccHHHHHHHHHHHH
Q psy825 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK-TMKLRGDNLDMAKKFRELLI 401 (565)
Q Consensus 323 laKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~-n~KL~~EN~eL~eKLKsLIE 401 (565)
.+|.+|.-+.+||+.....=.++.+.++.- --.++-.++...+.++...|....+. ..++...-.+|+++|.-+++
T Consensus 70 elr~kL~p~~~el~~~l~~~~eeLr~~L~p---~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae 146 (273)
T 3s84_A 70 QLRRQLTPYAQRMERVLRENADSLQASLRP---HADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQ 146 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 367777777777766666555555443322 11223334445555555555554333 22333333457777777776
Q ss_pred HHHHHHH-HHHHHHHH----HHHH----HHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy825 402 QYDEKEQ-ELLDYKAK----YLEM----QKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS 464 (565)
Q Consensus 402 QYElREe-hf~Klq~Q----v~~L----~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSK 464 (565)
.|..+=. |+..+..+ +..+ ...=-+||.+|..|++.|. ..|.. .+...++-++.++.
T Consensus 147 ~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr---~~l~~---~~e~l~~~l~~~~~ 212 (273)
T 3s84_A 147 DTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVR---GNLRG---NTEGLQKSLAELGG 212 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSSS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHhHHHHHH
Confidence 6665532 33333322 2222 1122356666666655443 12222 34444555555553
No 71
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.67 E-value=2.9e+02 Score=25.59 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q psy825 282 KYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVS 361 (565)
Q Consensus 282 KYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELs 361 (565)
|...|...++.. .....++.+-+.+ +..+|.++.---.-.|+=|++|..+.+
T Consensus 1 r~~~lE~qlkea---ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~--------------------- 52 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELK--------------------- 52 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred CHHHHHHHHHHH---HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy825 362 VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEF 441 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEF 441 (565)
-..+.|..+..+-+..+.+-..+...--.|..+||..-..|+-=|-.+.+|+..+. .|-..|..+..+|..+
T Consensus 53 -~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id-------~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 53 -TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID-------DLEDELYAQKLKYKAI 124 (155)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred -HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 442 QQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK 477 (565)
Q Consensus 442 QDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wK 477 (565)
++.|. .|| .+|-.|.-+.--|+-+...|+
T Consensus 125 ~~eLd------~tl-~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 125 SEEMK------QLE-DKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHH------HHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHH-HHHHhcccchHHHHHHHHHhh
No 72
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.54 E-value=56 Score=25.62 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.5
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHH
Q psy825 318 NSKQELTREKLENLCRELQKQNKAIR 343 (565)
Q Consensus 318 l~KaIlaKsKLEsLCRELQKqNK~LK 343 (565)
+.+.|..|-|+|.|-|+|.+.++.|+
T Consensus 6 LeqWv~~Rkk~eeler~lrk~kk~iK 31 (50)
T 1a92_A 6 LEQWVSGRKKLEELERDLRKLKKKIK 31 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998876
No 73
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=32.44 E-value=4.6e+02 Score=28.82 Aligned_cols=132 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK 471 (565)
Q Consensus 392 L~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEK 471 (565)
|..-|..|-+-+......+......+..-......||.+ |+.++ +-.-|..+..+|+.++.++...+..--.
T Consensus 439 l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k---~g~~w-----~r~~S~~~~~~l~~~~~~~~~~l~~A~~ 510 (704)
T 2xs1_A 439 VDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAK---FKERW-----QRTPSNELYKPLRAEGTNFRTVLDKAVQ 510 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTTC-----CSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccC-----CCCCcHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy825 472 ETATWKQRWEKSHEAYLEMSNEKTKAESE-----------LITTCRQLAALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 472 En~~wKrK~E~sNkaLleMaEER~k~~kE-----------le~l~kKieKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
-...++.+|+.....|--|..-...+... ......++..|-+=...|..||..+...|+.
T Consensus 511 sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~~~~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 511 ADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp HHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCCCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 74
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.14 E-value=51 Score=26.83 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 260 DVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEK 302 (565)
Q Consensus 260 ~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qK 302 (565)
...|..-+.|.+.|.||..|.|=-.-|-.|+|.+++.++.++.
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3466666777888999999888888888888888887776554
No 75
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.98 E-value=1.7e+02 Score=23.44 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy825 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKN 359 (565)
Q Consensus 323 laKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkE 359 (565)
.+|+-+..||.|+.+-++.+-+|-+.+-+-|.--|+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899888888888877777655555555543
No 76
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=26.81 E-value=2.4e+02 Score=22.41 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=55.6
Q ss_pred HHHHHHhHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy825 431 ISMYGEKYDEFQQTLSRSNEIFAGF------KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITT 504 (565)
Q Consensus 431 LniY~EKFeEFQDTL~KSNEvF~TF------KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l 504 (565)
|.-|...+++|.+-|...-....+. -..+..+-++.+.|+.+....+...+..+..--.|+....-.......+
T Consensus 4 L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i 83 (119)
T 3uun_A 4 LDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEV 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4455555556655555443333332 2355666667777777777777777777766655554432112222223
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q psy825 505 CRQL----AALLKLCRTLQTERAEMLAKLNG 531 (565)
Q Consensus 505 ~kKi----eKLE~LCRALQ~ER~~L~~kLk~ 531 (565)
..++ .+...||..+...+..|...|..
T Consensus 84 ~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 84 QEQMNLLNSRWECLRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 33456666666666677666644
No 77
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.72 E-value=3.5e+02 Score=24.28 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy825 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRK 358 (565)
Q Consensus 279 L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRk 358 (565)
++....++-.++..+...+..+++....+... ....-.++..|+.|+.+..+..+.|+..-...-..-.
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-------~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~---- 109 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSA-------PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIE---- 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44444555555555555554444433322111 1112246788888888888777777654443211100
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 359 NVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD 412 (565)
Q Consensus 359 ELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K 412 (565)
.... .. ......+.+..+.+ -|..+|..++..|..-+..|..
T Consensus 110 ----~~~~------~~-~~s~~~Rir~~q~~-~L~~kf~~~m~~yq~~q~~y~~ 151 (180)
T 1s94_A 110 ----QEEH------SN-KSSADLRIRKTQYS-TISRKFVEVMSDYNTTQIDYRD 151 (180)
T ss_dssp ----HTC------------CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCTT
T ss_pred ----hhhc------cC-CCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00001112222333 4888999999888776666544
No 78
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.50 E-value=3.2e+02 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHH
Q psy825 362 VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYD 404 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYE 404 (565)
..|...|.+...+++.-...+.++.-+-..++.-+..|-..||
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4578888888888877666555554444444444444444443
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.36 E-value=5.9e+02 Score=26.78 Aligned_cols=20 Identities=5% Similarity=-0.144 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q psy825 422 KTENGLRKQISMYGEKYDEF 441 (565)
Q Consensus 422 etE~eLR~QLniY~EKFeEF 441 (565)
..|..+..+|..-..-.+++
T Consensus 31 k~e~~V~~~l~~LE~~l~el 50 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHH
Confidence 33444444444333333333
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.13 E-value=3.6e+02 Score=24.23 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 452 FAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 452 F~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
+..+..+++.+.+.+..|-.+....+.+.+...+.+-++-++-..+..++..+...+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666666666666655443
No 81
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.09 E-value=2.9e+02 Score=23.12 Aligned_cols=54 Identities=6% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy825 479 RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532 (565)
Q Consensus 479 K~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~ 532 (565)
-....+..+++|...=..+..++..++.+++.+..=...|+..-.++|..|-.-
T Consensus 14 ~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 14 ISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999998889999999999999999999999999999999888544
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.03 E-value=2.1e+02 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy825 289 DFNILSLLSKQNEKQIALLQNEKEILTLENSK 320 (565)
Q Consensus 289 E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~K 320 (565)
+.+..+..+..++++.+..-.+...|++++.|
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555543
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.06 E-value=1.3e+02 Score=31.05 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy825 487 YLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGY 535 (565)
Q Consensus 487 LleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~ 535 (565)
|..+-++...+...+..+...+..|....+..+..|..|++.|.+..|.
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444455556666677777777778888888889999999999988773
No 84
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.89 E-value=1.5e+02 Score=23.09 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy825 426 GLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463 (565)
Q Consensus 426 eLR~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMS 463 (565)
+|+.|+..-+.++..+..+|..+-+-....+.++++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999999999999999888888888888764
No 85
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.85 E-value=3.5e+02 Score=23.60 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy825 462 MSSKINKLEKETATWKQ-RWEKSHEAYLEMSNEKTKAESELITTCRQL 508 (565)
Q Consensus 462 MSKKiKKLEKEn~~wKr-K~E~sNkaLleMaEER~k~~kEle~l~kKi 508 (565)
+-....+++.|...|.. =|+.+|..+..---+|.........|..++
T Consensus 45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777754 588888888766555444444444444433
No 86
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.69 E-value=6.7e+02 Score=26.89 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy825 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQ 443 (565)
Q Consensus 364 FQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY~EKFeEFQD 443 (565)
++..|...+..+ .....+|..++.+|....-.-.+-+..++..+.....+-..+...|+.|...++..+.
T Consensus 87 l~D~L~k~q~~V----------~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~ 156 (464)
T 1m1j_B 87 LQTTLLKQEKTV----------KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYN 156 (464)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 444 TLSRSNEIFAGF--------KSEMESMSSKINKLEKETATWKQRW 480 (565)
Q Consensus 444 TL~KSNEvF~TF--------KkEMEKMSKKiKKLEKEn~~wKrK~ 480 (565)
.+. +++..- +.-++.+..+|..||.....+...+
T Consensus 157 ~i~---~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 157 YIK---DNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.50 E-value=3e+02 Score=22.79 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=22.9
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH---HHHHHHHHHHHHh
Q psy825 320 KQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVK---LENTLSEISNQVQ 376 (565)
Q Consensus 320 KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseK---FQ~tL~DIq~qME 376 (565)
+....+..||.-+..|-.+...|... +.+.++++..|+.. +..-|.+++..++
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~q----l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGS----MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444443333333333 33444444444433 4455555555554
No 88
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.32 E-value=82 Score=27.35 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy825 314 LTLENSKQELTREKLENLCRELQKQNKAIREE 345 (565)
Q Consensus 314 lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEE 345 (565)
.|.|..|.+-++-|+.+|-.||++.|+.|...
T Consensus 44 aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 44 AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999877643
No 89
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=23.22 E-value=6.8e+02 Score=26.39 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccc----cc-hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy825 358 KNVSVKLENTLSEISNQVQESNNK----TM-KLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLE----MQKTENGLR 428 (565)
Q Consensus 358 kELseKFQ~tL~DIq~qMEE~~~~----n~-KL~~EN~eL~eKLKsLIEQYElREehf~Klq~Qv~~----L~etE~eLR 428 (565)
.-++.||+....-.. +..+.. .. =+..++.+|..=++.|-+-|+.-+..+.+++..+.. .......+.
T Consensus 211 ~SLT~HyDqC~~l~~---~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~ 287 (413)
T 4hpq_C 211 KSFTDHFDKCSALSS---RSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLS 287 (413)
T ss_dssp HHHHHHHHHHHHTTT---TSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---cCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888774432 111111 11 244567788888888888888877777664444433 444455555
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q psy825 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYL-EMSNEKTKAESELITTCRQ 507 (565)
Q Consensus 429 ~QLniY~EKFeEFQDTL~KSNEvF~TFKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLl-eMaEER~k~~kEle~l~kK 507 (565)
..+..|. ++.++-..+.--.++|..|+.=|......+.. ...|=..|..+=.+|| +++-.|....+--..+..-
T Consensus 288 ~l~~~~~-~~~e~l~i~~~i~e~l~~fk~~~~~~~~~~~~----L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~ 362 (413)
T 4hpq_C 288 KLLTELR-KHEEYISVFEGISALIQKFKASCLEDIRQTRN----LLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSC 362 (413)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665 66667777888888888999888655555533 2233344444444444 3433333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy825 508 LAALLKLCRTLQTERAEMLAKLN 530 (565)
Q Consensus 508 ieKLE~LCRALQ~ER~~L~~kLk 530 (565)
.++|..|..+=...|........
T Consensus 363 ~~~L~~l~e~d~~~Re~F~~~~G 385 (413)
T 4hpq_C 363 ETQLEQINTADLRERQMFLLENG 385 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777776677776655443
No 90
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.10 E-value=4e+02 Score=23.68 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccc
Q psy825 303 QIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKT 382 (565)
Q Consensus 303 k~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRELQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n 382 (565)
..++|+.+..+++.++.|....|.-||..-.+--..-+.-.-+-..++..-+..=.+|...|-.+=.+++.+|..-...+
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888877776222222222222222233344445555666678888888888876543332
Q ss_pred -------chhhhccHHHHHHH
Q psy825 383 -------MKLRGDNLDMAKKF 396 (565)
Q Consensus 383 -------~KL~~EN~eL~eKL 396 (565)
..|..+|.-|.+|.
T Consensus 87 e~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 87 EQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHHHHHHhhccchhhhh
Confidence 45667777666553
No 91
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.96 E-value=2.2e+02 Score=25.15 Aligned_cols=26 Identities=42% Similarity=0.564 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy825 333 RELQKQNKAIREENLQKFREEEEKRK 358 (565)
Q Consensus 333 RELQKqNK~LKEEnk~r~~EEEeKRk 358 (565)
|||+.....|..||.+..++-+.-|+
T Consensus 68 ~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555556666666665555544443
No 92
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=22.59 E-value=1.9e+02 Score=29.14 Aligned_cols=79 Identities=8% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhhcccc-chhhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHH
Q psy825 362 VKLENTLSEISNQVQESNNKT-MKLRGDNLDMAKKFRELLIQYDEK-EQELLDYKAKYLE--------MQKTENGLRKQI 431 (565)
Q Consensus 362 eKFQ~tL~DIq~qMEE~~~~n-~KL~~EN~eL~eKLKsLIEQYElR-Eehf~Klq~Qv~~--------L~etE~eLR~QL 431 (565)
++++.-|.++..+|..+...- ..+.+.-.+|+.+|.-+++.|-.| ..+++.++.++.- +...=.+||..|
T Consensus 110 ~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L 189 (307)
T 2l7b_A 110 ARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL 189 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777666552 344455557999999999888655 3456666666543 334445677777
Q ss_pred HHHHHhHHH
Q psy825 432 SMYGEKYDE 440 (565)
Q Consensus 432 niY~EKFeE 440 (565)
..|++-|..
T Consensus 190 ~Py~e~~~~ 198 (307)
T 2l7b_A 190 GPLVEQGRV 198 (307)
T ss_dssp SSSCTTTTT
T ss_pred hhHHHHHHH
Confidence 777765554
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.95 E-value=4.9e+02 Score=24.30 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825 463 SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL 529 (565)
Q Consensus 463 SKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL 529 (565)
...|..|+++...+..+...-.-.|-.-..--+....++..++.+...|+.=.+.||.|=..|...+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.60 E-value=3.5e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy825 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTRE 326 (565)
Q Consensus 279 L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKs 326 (565)
+..|..++...+..|+..+.-++.++..-+-+.++++.|+.+.+-.-+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 95
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.82 E-value=3e+02 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhhhccccCCC
Q psy825 503 TTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNN 553 (565)
Q Consensus 503 ~l~kKieKLE~LCRALQ~ER~~L~~kLk~~~g~s~~~~~~~~~~~~~~~n~ 553 (565)
+.+.....+..|=..|..+|..+..+|... |.++ ..-|+.-.|-+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke-Gip~-----g~gmg~~g~g~ 158 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQA-GIPR-----GAGMGYGGCGG 158 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-----CCCCCCCCCCC
Confidence 344555556666678899999999999887 8774 22478889986
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.60 E-value=6.7e+02 Score=25.38 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHH
Q psy825 469 LEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQL----AALLKLCRT 517 (565)
Q Consensus 469 LEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKi----eKLE~LCRA 517 (565)
+|.|....++-|+.+...+=.+.++.....+++..+..++ ++|..+|+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3444444444444444444445555666666665554444 455555554
Done!