RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy825
(565 letters)
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 148 bits (376), Expect = 2e-40
Identities = 114/299 (38%), Positives = 171/299 (57%), Gaps = 39/299 (13%)
Query: 263 LQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQE 322
Q + TP+EK + + ++ +EL + L K+ +K+ LQ EK+ L E+SK
Sbjct: 11 NQSLSKLDTPEEKLETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAI 70
Query: 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKT 382
L R KLE+LCRELQK NK ++EEN + EEEEKRK ++ K ++TL +I +Q++E +N
Sbjct: 71 LARSKLESLCRELQKHNKTLKEENKARSDEEEEKRKELTEKFQSTLKDIQDQMEEHSNPN 130
Query: 383 MKLRGDNLDMAKKFRELLIQYDEKEQ---------------------------------- 408
KL +N ++ +K +EL+ QY+ +EQ
Sbjct: 131 HKLCEENEELREKLKELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQAQEQAEQEQEKH 190
Query: 409 -----ELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463
LL A+ +++TE LR Q+++Y +K+ EFQ TL++SNE+F FK EME MS
Sbjct: 191 KREKEILLKEAAQVSTLKETEKELRAQLNLYSDKFKEFQDTLNKSNEVFLTFKQEMEKMS 250
Query: 464 SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522
KI KLEKE WK++WEKS++A LEM+ E+ K + E+ +++ L KLCR LQ ER
Sbjct: 251 KKIKKLEKENLAWKRKWEKSNKALLEMAEERQKRDKEIEKLKKKIDKLEKLCRALQAER 309
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 54.4 bits (130), Expect = 1e-07
Identities = 98/461 (21%), Positives = 183/461 (39%), Gaps = 15/461 (3%)
Query: 34 EKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNE-NSKEDTVK 92
+ KK E + A + + + K E++ K + K + K
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 93 IDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNM 152
E KKK ++ K +E++ + + K++ K+ +E KK ++ K E+ +K D+
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Query: 153 KNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKN 212
K E + +KK E K+ + +++K++D+AK E+ K+ KK +K
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Query: 213 KEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTP 272
+ K ++ ++ D+ KK + D A K + K L+ + +
Sbjct: 1512 ADEAKKAEEAKKADEAKKAEEAKKAD-----EAKKAEEKKKADELKKAEELKKAEEKKKA 1566
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
+E K K L + E+ + L + EK++ E K E + K E
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE--- 1623
Query: 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDM 392
EL+K + ++ K +E EEK+K +K ++I + + K + +
Sbjct: 1624 -ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 393 A----KKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS 448
A KK E L + E+ ++ + K K E +K L+K K +E ++
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 449 NEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLE 489
+ K + E KI L+KE + K EA +E
Sbjct: 1743 KKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Score = 45.9 bits (108), Expect = 6e-05
Identities = 73/278 (26%), Positives = 114/278 (41%), Gaps = 16/278 (5%)
Query: 7 KKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPK 66
KK ++ K + KA +KA + E+ KK E +E A K E A A +
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Query: 67 SENEVTNVKVESENKTNENSKEDTVKIDTEVKKKE------VDETVKKNEVELKSKEEVK 120
E + + E + K E K + KI E KK V++ KK E K EE+K
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
Query: 121 ---SEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKI 177
E + +E+KK E+ K E+ +K ++ K + EE K E + K
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE---ELKKK 1710
Query: 178 EVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPP 237
E ++K K + K + E K K + K+ E D+K E KK +++K K
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA----KKDEEEKKKIAHLKKEE 1766
Query: 238 DTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEK 275
+ A + AV +E + D +M D + D
Sbjct: 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
Score = 44.4 bits (104), Expect = 2e-04
Identities = 95/484 (19%), Positives = 190/484 (39%), Gaps = 21/484 (4%)
Query: 20 KAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESE 79
A +KA +NE+ +K E + + A K E A A+ K E K +
Sbjct: 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK--KADEA 1295
Query: 80 NKTNENSKEDTVKIDTEVKKKEVD-----ETVKKNEVELKSKEEVKSEVLKEVEKESKKE 134
K E K D K E KK + E KK K K E + + + E++
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 135 EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTE 194
+ E++ + +K + K A ++K + AK + ++ K++D+ K
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
Query: 195 QKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIK 254
K K + KK E +K E K ++ ++ D+ KK+ + + A A +
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA--------E 1467
Query: 255 EHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEIL 314
E K D + +++ DE +K E + ++ +K + E+
Sbjct: 1468 EAKKADEAKKKAEEAKKADE----AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Query: 315 TLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQ 374
E K E ++ E ++ +++ KA + ++ ++ EEK+K K ++ +
Sbjct: 1524 ADEAKKAEEAKKADE--AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 375 VQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMY 434
E K + R + + + + + + K+ E KA+ L+ + E +Q+
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 435 GEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEK 494
+ + + L ++ E +E + + K +E ++ +K+ EA + + E
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Query: 495 TKAE 498
KAE
Sbjct: 1702 KKAE 1705
Score = 39.0 bits (90), Expect = 0.009
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 16/244 (6%)
Query: 3 KKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKK------ 56
KK + ++K ++K + A+ +++E KK E ++ + A E K
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Query: 57 ---ELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVEL 113
E A A K + E E++ K E K D K E KK+ DE K E +
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Query: 114 KSKEEVKSEVLKEVEKESKKEEK----TVDKKEQEQKNDDKNMKNENKDA---IKVEEKK 166
K+ E K+E K+ ++ K EE K E+++K D+ E K A K EE K
Sbjct: 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
Query: 167 NNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQD 226
E DK++A + ++ K + + + +E K +K E + + +K + K+ ++
Sbjct: 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
Query: 227 KNKK 230
+ KK
Sbjct: 1631 EKKK 1634
Score = 39.0 bits (90), Expect = 0.009
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 2/217 (0%)
Query: 16 KLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVK 75
K+ + + + + + KK E + A E+ ++ + K+E + +
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Query: 76 VESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEV-KSEVLKEVEKESKKE 134
+ + +E + +K + E KK +E KK E K EE+ K+E +++ E K+
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Query: 135 EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTE 194
E DKK+ E+ D+ K + K EEKK E K + ++ +E +K + + +
Sbjct: 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
Query: 195 QKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQ 231
+K K++ + + + L ND K+ +D K+
Sbjct: 1798 KKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
Score = 37.4 bits (86), Expect = 0.027
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 6/226 (2%)
Query: 6 LKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSP 65
L+K E K + KA KA + E KK +E + +A E K+ N+
Sbjct: 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
Query: 66 KSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLK 125
+ + E+ K D E+KK E KK + K++E+ K++ K
Sbjct: 1253 EIRKFEEARMAHFARRQAAIKAEEARKAD-ELKKAE---EKKKADEAKKAEEKKKADEAK 1308
Query: 126 EVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKE 185
+ +E+KK ++ KK +E K K + ++A K E E + + + E ++ E
Sbjct: 1309 KKAEEAKKADE-AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 186 SDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQ 231
+ + K + +K + KK E +K E K ++ +++ K+
Sbjct: 1368 AAEKKKEEAKKKADAAK-KKAEEKKKADEAKKKAEEDKKKADELKK 1412
Score = 32.0 bits (72), Expect = 1.0
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 8/206 (3%)
Query: 35 KDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKID 94
+D K E V A E ++ + + + K E K + K + VK
Sbjct: 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKA 1232
Query: 95 TEVKKKEVD----ETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVD--KKEQEQKND 148
E KK + E + NE K +E + + +E + D KK +E+K
Sbjct: 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292
Query: 149 DKNMKNENKDAIKVEEKKNNEGDKS-VAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTE 207
D+ K E K +KK E K+ AK + ++ K++D AK E+ K K E
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA-AEAAKAE 1351
Query: 208 PDQKNKEGLKNNDKKQQQDKNKKQGK 233
+ E +K + +K K++ K
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAK 1377
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 47.0 bits (112), Expect = 2e-05
Identities = 44/246 (17%), Positives = 103/246 (41%), Gaps = 13/246 (5%)
Query: 298 KQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREE---- 353
K+ E+++A L+ + E L E + LE+L EL++Q + + + + RE
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729
Query: 354 ------EEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAK---KFRELLIQYD 404
+ + + + +LE E+ + +L +AK + EL +
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789
Query: 405 EKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS 464
++EL + + + E ++ + L +++ ++ + +Q + E + +++ +
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849
Query: 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAE 524
++ +LEKE K+ E+ E+ +E + E E +L L L+ E +
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909
Query: 525 MLAKLN 530
+ +L
Sbjct: 910 LRERLE 915
Score = 42.0 bits (99), Expect = 8e-04
Identities = 46/247 (18%), Positives = 113/247 (45%), Gaps = 10/247 (4%)
Query: 293 LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREE------N 346
L ++ E ++ALL + + L E + E +LE ELQ++ + +E
Sbjct: 216 QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275
Query: 347 LQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEK 406
L++ REE E+ + ++L+ + E+ ++ + +L + ++ ++ EL + +
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335
Query: 407 EQELLDYKAKYLEMQKTENGLRKQI----SMYGEKYDEFQQTLSRSNEIFAGFKSEMESM 462
++EL + + E+++ L + +E ++ E A ++E+ +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395
Query: 463 SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522
+++ +L++E + ++R E+ E ++ E + E+EL +L L + L+ +
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455
Query: 523 AEMLAKL 529
E+ +L
Sbjct: 456 EELRDRL 462
Score = 40.5 bits (95), Expect = 0.003
Identities = 61/377 (16%), Positives = 160/377 (42%), Gaps = 51/377 (13%)
Query: 96 EVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNE 155
+ +K+E + +++ E L+ E++ E+ K++EK + + ++ QE K + E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKL--ERQAEKAERYQELKAE----LRE 224
Query: 156 NKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEG 215
+ A+ + + K + + E+ + +E ++ + + E+ KE++ +K + + +
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREE-- 282
Query: 216 LKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEK 275
L+ ++ + K + + + +
Sbjct: 283 LEELQEELLELKEEIEEL---------------------------------------EGE 303
Query: 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCREL 335
++ ++ EL + + L + E + + ++E+ E +EL E+L E
Sbjct: 304 ISLLRERLEEL--ENELEELEERLEELKEKIEALKEELEERETLLEEL--EQLLAELEEA 359
Query: 336 QKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKK 395
+++ + L++ E E + +LE L+EI N+++E + L ++++
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419
Query: 396 FRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF 455
+L + E E EL + + + E+ + L +Q+ ++ E ++ L+ E
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479
Query: 456 KSEMESMSSKINKLEKE 472
+ E+ S+ +++++LE E
Sbjct: 480 EKELSSLEARLDRLEAE 496
Score = 40.1 bits (94), Expect = 0.003
Identities = 44/229 (19%), Positives = 99/229 (43%), Gaps = 1/229 (0%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
+E+ + + +L + L + E + L+ + E L + + + LE
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732
Query: 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDM 392
+LQ + + + EE L++ EE E+ + +LE L + + + + +L +
Sbjct: 733 EQLQSRLEEL-EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791
Query: 393 AKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIF 452
++ EL + +E E+ L + + +++ L ++I E+ +E ++ L E
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL 851
Query: 453 AGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESEL 501
+ E+E + ++ +LE E + ++ E E+ E + ESEL
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Score = 37.4 bits (87), Expect = 0.025
Identities = 48/240 (20%), Positives = 109/240 (45%), Gaps = 9/240 (3%)
Query: 301 EKQIALLQNEKEI----LTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356
EKQ+ L+ + E L+ +EL L +EL+K+ + + EE L + EE E+
Sbjct: 199 EKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEE-LSRLEEELEE 257
Query: 357 RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAK 416
+ + E + E+ ++++E + +L+ + L++ ++ EL + + L + + +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317
Query: 417 YLEMQKTENGLRKQISMY---GEKYDEFQQTLSRSNEIFAGFKSEMESM-SSKINKLEKE 472
E+++ L+++I E+ + + L + K E+E S+ + +LE+
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Query: 473 TATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGA 532
++ + E+ NE + + E+ + +L L + L+ E E+ A+L
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437
Score = 35.5 bits (82), Expect = 0.082
Identities = 60/370 (16%), Positives = 155/370 (41%), Gaps = 25/370 (6%)
Query: 124 LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKS 183
LKE+E+E + E ++K E+E K+ +KNE + + E+ + ++ + ++++
Sbjct: 669 LKELEEELAELEAQLEKLEEELKS----LKNELRSLEDLLEELRRQLEE--LERQLEELK 722
Query: 184 KESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASV 243
+E + + EQ L+ +++ + + + ++ +++ + + + +
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL-EEALAKLKEEI 781
Query: 244 NAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQ 303
++ +++E + + + + ++ S + L ++ E++
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR-----ERLEQEIEELEEE 836
Query: 304 IALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVK 363
I L+ + + L E + E E+L+ EL+ + K E+ L++ EE+E+ + +
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAE-KEELEDELKELEEEKEELEEELRE 895
Query: 364 LENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKT 423
LE+ L+E+ ++++ + +L L ++ E E+EL +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKL-------ERLEVELPELEEELEEE-----YEDTL 943
Query: 424 ENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS 483
E L ++I E+ + R+ E + + E + S+ LE+ + E+
Sbjct: 944 ETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003
Query: 484 HEAYLEMSNE 493
+ E E
Sbjct: 1004 DKEKRERFKE 1013
Score = 33.1 bits (76), Expect = 0.42
Identities = 58/350 (16%), Positives = 144/350 (41%), Gaps = 23/350 (6%)
Query: 81 KTNENSKEDTVK-IDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVD 139
+ N ED ++ ++ +++K E + ELK++ L + + ++E
Sbjct: 185 EENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244
Query: 140 KKEQEQKNDDKNMKNENKDAI--KVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKN 197
++E + ++ E + ++EE K+ + E+ ++ E + + E +
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304
Query: 198 KELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHP 257
L+ + E + + +E + ++ +++ + K+ + + KE
Sbjct: 305 SLLRERLE-ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
Query: 258 KTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLE 317
+ ++ + +E F+ + ++ +EL E ++A ++NE E L E
Sbjct: 364 EE----KLSALLEELEELFEALREELAEL--------------EAELAEIRNELEELKRE 405
Query: 318 NSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQE 377
E E+L +L+++ K + E + E EE + + +LE L E+ ++++E
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE-ELEEQLEELRDRLKE 464
Query: 378 SNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGL 427
+ +L+ + + K+ L + D E E + ++ E+GL
Sbjct: 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514
Score = 32.8 bits (75), Expect = 0.66
Identities = 40/197 (20%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 336 QKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKK 395
K++ ++ L++ EE + + KLE L + N+++ + +LR ++
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR-------RQ 710
Query: 396 FRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF 455
EL Q +E ++EL + + L+ ++ E+ +E ++ L E
Sbjct: 711 LEELERQLEELKRELAALEEE-------LEQLQSRLEELEEELEELEEELEELQERLEEL 763
Query: 456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLC 515
+ E+ES+ + KL++E +++ + E E+ E +AE L R+L +L +
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Query: 516 RTLQTERAEMLAKLNGA 532
L+ E E+ ++
Sbjct: 824 ERLEQEIEELEEEIEEL 840
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 45.8 bits (109), Expect = 5e-05
Identities = 43/256 (16%), Positives = 101/256 (39%), Gaps = 22/256 (8%)
Query: 298 KQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIR------EENLQKFR 351
++ E++I L+ + L ++ E+LE +L+K+ + + ++L +
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
Query: 352 EEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQ--------- 402
E E+ + +L L+E+ +++E + + + L A+ E L
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAE-EELAEAEAEIEELEAQIEQLKEEL 798
Query: 403 ------YDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFK 456
DE EL + +++ L ++I+ + ++ ++ + +E
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
Query: 457 SEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCR 516
+E+E + I +LE E EA + +E + EL + + L +
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
Query: 517 TLQTERAEMLAKLNGA 532
L+ + A++ +L G
Sbjct: 919 ELREKLAQLELRLEGL 934
Score = 39.3 bits (92), Expect = 0.007
Identities = 42/236 (17%), Positives = 94/236 (39%), Gaps = 8/236 (3%)
Query: 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQ 338
+S++ S L D L +Q E++IA L E L E + E E+ E E +
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-EA 782
Query: 339 NKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRE 398
E +++ +EE + + +L L+ ++ + + L ++ +
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
Query: 399 LLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSE 458
L Q +E +++ A+ E+++ L ++ + + E A +SE
Sbjct: 843 LEEQIEELSEDIESLAAEIEELEELIEELESEL-------EALLNERASLEEALALLRSE 895
Query: 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKL 514
+E +S ++ +LE + + ++ E+ E ++ E + +L+ L
Sbjct: 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
Score = 38.9 bits (91), Expect = 0.009
Identities = 27/132 (20%), Positives = 64/132 (48%)
Query: 399 LLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSE 458
L+++ +E +EL + + + E ++ L ++ EK +E + +S E + E
Sbjct: 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Query: 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTL 518
+ +++++I++LE++ ++R E+ + + ES+L +LA L + L
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
Query: 519 QTERAEMLAKLN 530
+ E + A+L
Sbjct: 350 KEELESLEAELE 361
Score = 38.5 bits (90), Expect = 0.011
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 7/212 (3%)
Query: 325 REKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMK 384
+ +L L L E L++ +EE ++ + +L L E+ +++E + +
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
Query: 385 LRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQT 444
L + ++ K+ L + EQ+ + + +++ L Q+ K DE +
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Query: 445 LSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHE-------AYLEMSNEKTKA 497
L+ E K E+ES+ +++ +LE E + R E+ E ++ +
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
Query: 498 ESELITTCRQLAALLKLCRTLQTERAEMLAKL 529
+E+ +L L LQ E E+L KL
Sbjct: 399 NNEIERLEARLERLEDRRERLQQEIEELLKKL 430
Score = 36.2 bits (84), Expect = 0.060
Identities = 32/175 (18%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 291 NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKF 350
+ L+ + E+++ L+ E E L E + E E+LE+ EL++Q L+
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ--------LETL 384
Query: 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKK-----FRELLIQYDE 405
R + + + L N + + +++ ++ +L+ + ++ KK +EL + +E
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
Query: 406 KEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEME 460
E+EL + + + +++ LR+++ + D ++ L++ + E
Sbjct: 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
Score = 32.7 bits (75), Expect = 0.56
Identities = 31/187 (16%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 343 REENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQ 402
R +++ E+ E+ + +LE L+E+ +++E + +LR + +++++ L
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 403 YDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM 462
E E+ + + ++ K L +I E+ +E ++ L+ + ++E+E +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-------EAEIEEL 787
Query: 463 SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522
++I +L++E ++ ++ ++ E L + R++AA + L+ +
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
Query: 523 AEMLAKL 529
E+ +
Sbjct: 848 EELSEDI 854
Score = 32.0 bits (73), Expect = 1.1
Identities = 27/178 (15%), Positives = 71/178 (39%), Gaps = 3/178 (1%)
Query: 357 RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAK 416
R+ +LE + E+ ++ E +LR + ++ ++ +L + +E +++ +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 417 YLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATW 476
++ L ++I+ ++ E + + E + E+ ++I +LE +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
Query: 477 KQRWEKSHEAYLEMSNEKT---KAESELITTCRQLAALLKLCRTLQTERAEMLAKLNG 531
K+ + EA E+ E T + + L L + + E + +L+
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
Score = 30.4 bits (69), Expect = 3.7
Identities = 55/334 (16%), Positives = 138/334 (41%), Gaps = 28/334 (8%)
Query: 98 KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENK 157
+++E++E +K E EL+ K + L E+ KE ++ E+ +++ +E + + + K
Sbjct: 675 RRREIEELEEKIE-ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
Query: 158 DAIKVEEKKNNEGDK----SVAKIEVDQKSKESDKAKTDTEQKNKELK-NVKKTEPDQKN 212
D ++E + ++ S E++ + +E ++ + E++ E + +++ E +
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
Query: 213 KEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTP 272
+ ++ + + + + N + + T+ L+
Sbjct: 794 LKEELKALREALDELRAELTLLN----EEAANLRERLESLERRIAATERRLEDL------ 843
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
+E+ + +S+ L + L L ++ E ++ L NE+ E L +
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA-------SLEEALALLRSEL 896
Query: 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDM 392
EL ++ + + + + RE EE R+ ++ +LE L + ++ + + L+
Sbjct: 897 EELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
Query: 393 AKKFRELLIQYDEKEQELLDYKAKYLEMQKTENG 426
A+ + E ++E + K LE + E G
Sbjct: 956 AEALENKI----EDDEEEARRRLKRLENKIKELG 985
Score = 29.3 bits (66), Expect = 8.0
Identities = 20/126 (15%), Positives = 55/126 (43%)
Query: 405 EKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS 464
E+ +E+ + + K E+++ L K ++ ++ +E ++ L + + ++ ++
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
Query: 465 KINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAE 524
+ +LE E ++R + + E+ E + E L +LA L+ + +
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
Query: 525 MLAKLN 530
+ +L
Sbjct: 794 LKEELK 799
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 42.7 bits (101), Expect = 5e-04
Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 18/239 (7%)
Query: 300 NEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKN 359
E + L + K+I L +Q +EK+ L E+ ++I E ++ + EE+
Sbjct: 268 EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI-AEKERELEDAEERLAK 326
Query: 360 VSVKLENTLSEI-----------------SNQVQESNNKTMKLRGDNLDMAKKFRELLIQ 402
+ +++ L+EI + + E + LR + ++ K+F E +
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
Query: 403 YDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM 462
+ ++L K + E+++ + L++++ E+ + ++ + E E
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
Query: 463 SSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTE 521
+ +I K E + K + ++ E + E EL R+LA R +
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
Score = 34.3 bits (79), Expect = 0.22
Identities = 29/185 (15%), Positives = 71/185 (38%), Gaps = 8/185 (4%)
Query: 295 LLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEE 354
L + + + + E+ LE +EL E L L L + + + + E
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEEL-EEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
Query: 355 EKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYK 414
K + ++E L EI ++ + L + ++ ++ +L Q E+E+ +
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
Query: 415 AKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETA 474
K E+++ L + + + ++ ++++ + KI +LE +
Sbjct: 861 GKKEELEEELEELEAALRDLESRLGDLKKERDE-------LEAQLRELERKIEELEAQIE 913
Query: 475 TWKQR 479
++R
Sbjct: 914 KKRKR 918
Score = 33.5 bits (77), Expect = 0.36
Identities = 31/181 (17%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
Query: 298 KQNEKQIALLQNE--KEILTLENSKQELTREKLENLCRELQKQNKAIR--EENLQKFREE 353
K+ E +I L+ + K L + + L+ ++ + EL K + + E L++ ++
Sbjct: 761 KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
Query: 354 EEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDY 413
+ LE + E+ Q + + + + ++ K EL + +E E L D
Sbjct: 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
Query: 414 KAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKET 473
+++ +++K + L Q+ K +E + + + + + K+++E++ +++++E
Sbjct: 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
Query: 474 A 474
Sbjct: 941 G 941
Score = 32.0 bits (73), Expect = 1.2
Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 4/148 (2%)
Query: 84 ENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVD--KK 141
+ + +++ E++++ E +E ++ E+E+ K+ +T D K
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEY--AELKEELEDLRAELEEVDKEFAETRDELKD 389
Query: 142 EQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELK 201
+E+ K NE K + +++ + +A + E+ + + E+++K L+
Sbjct: 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE 449
Query: 202 NVKKTEPDQKNKEGLKNNDKKQQQDKNK 229
K+ ++ L +++ K +
Sbjct: 450 IKKQEWKLEQLAADLSKYEQELYDLKEE 477
Score = 31.6 bits (72), Expect = 1.4
Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Query: 293 LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAI--REENLQKF 350
+ + K+ E+ + KE L +++EN+ EL++ I EE+L K
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
Query: 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQEL 410
E LE LS +++ E + KL + + + RE+ E++
Sbjct: 778 EEALN-------DLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREI-----EQKLNR 823
Query: 411 LDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470
L + +YLE K L++Q E+ ++ + N + E+E + + + LE
Sbjct: 824 LTLEKEYLE--KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
Query: 471 KETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLA 527
K+ ++ E+ + + E+++ ++L+ L L+ E +E+
Sbjct: 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 41.4 bits (98), Expect = 0.001
Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 6/159 (3%)
Query: 78 SENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKT 137
S+ + E +KE V KE+ E +K+ +E+KS E E+ ++ E+
Sbjct: 2 SKVRVYELAKE------LGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEE 55
Query: 138 VDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKN 197
+ +E + + + + A ++ E + + + + A+ +
Sbjct: 56 AKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPK 115
Query: 198 KELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSP 236
+ KK P K K+ + + ++ K K +
Sbjct: 116 AKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRR 154
Score = 32.1 bits (74), Expect = 0.87
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 12/168 (7%)
Query: 34 EKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKI 93
EK K+ S SS E + K E E E E +E +
Sbjct: 22 EKLKELGIEVKSHSSTVEEEEAR-----KEEAKREAEEEAKAEAEEAAAAEAEEEAKAEA 76
Query: 94 DTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMK 153
+E E E + E+ E + ++ + K+ +K K
Sbjct: 77 AAAAPAEEAAEAAAAAEAAARPAED-------EAARPAEAAARRPKAKKAAKKKKGPKPK 129
Query: 154 NENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELK 201
+ K +G K + ++ ++ K + TE+ +E+
Sbjct: 130 KKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVV 177
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 40.8 bits (96), Expect = 0.002
Identities = 67/375 (17%), Positives = 131/375 (34%), Gaps = 34/375 (9%)
Query: 6 LKKREKILKNKLD-VKAVSNEKASCSESNEKDKKTPETTTSE--SSVTNAPEKKELANVA 62
L++ L NK+ +K V N + + N K K + + +KK A
Sbjct: 1004 LERELARLSNKVRFIKHVINGELVIT--NAKKKDLVKELKKLGYVRFKDIIKKKSEKITA 1061
Query: 63 NSPKSENEVTNVKVESENKTNEN---------------SKEDTVKIDTEVKKKEVD-ETV 106
+ E E + + +KE K++ E++KKE + E +
Sbjct: 1062 EEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKL 1121
Query: 107 KKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKND-DKNMKNENKDAIKVEEK 165
K + E++ + + +E++ + EEK + K+++ + K K K E+K
Sbjct: 1122 KNTTPKDMWLEDLD-KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKK 1180
Query: 166 KNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQ 225
K K V SK D + + K + DQ++ E K KK
Sbjct: 1181 KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSV 1240
Query: 226 DKNKKQGKTSPP-----DTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIIS 280
+ K + S D +S + K + V S+ PD + S
Sbjct: 1241 KRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGS 1300
Query: 281 QKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340
+ S + K+ E +A L+ +K+ K++ + + + +
Sbjct: 1301 KPSSP------TKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLR 1354
Query: 341 AIREENLQKFREEEE 355
R++ E+++
Sbjct: 1355 RPRKKKSDSSSEDDD 1369
Score = 31.2 bits (71), Expect = 1.8
Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 3/194 (1%)
Query: 1 MTKKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELAN 60
K + EK + SN S E +E+ K P+ ++ + + + +
Sbjct: 1196 GNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSE 1255
Query: 61 VANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVK 120
+ S++ K ++ K + + + K + K ++
Sbjct: 1256 DNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGES-NGGSKPSSPTKKKVKKRL 1314
Query: 121 SEVLKEVEKESKKEEKTVDKKE--QEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIE 178
L ++K+ K E+KT KK+ K + + + ++ ++ D ++++
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVD 1374
Query: 179 VDQKSKESDKAKTD 192
+ + D D
Sbjct: 1375 DSEDEDDEDDEDDD 1388
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 39.5 bits (93), Expect = 0.005
Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 51/270 (18%)
Query: 274 EKFKIIS--QKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTR--EKLE 329
+K I++ E+ L L + I L+ E L + LT+ E L+
Sbjct: 7 KKVLIVTLKSYKDEV------LEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALD 60
Query: 330 NLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKT------- 382
L L K N E+ + EE K+V +LE EI +E +
Sbjct: 61 KLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELE 120
Query: 383 ------MKLRGDNLDMAKKFRELLI----------QYDEKEQELLDYKAKYLEMQKTEN- 425
+LD++ + + +E + E +Y+ K
Sbjct: 121 QEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVY 180
Query: 426 ----GLRKQISMYGEKYDEFQ---------QTLSRSNEIFAGFKSEMESMSSKINKLEKE 472
L++ E +E + + +E+ K E+E + + L +E
Sbjct: 181 VVVVVLKEL---SDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEE 237
Query: 473 TATWKQRWEKSHEAYLE-MSNEKTKAESEL 501
+++ + A E + E +AE+
Sbjct: 238 LKELAKKYLEELLALYEYLEIELERAEALS 267
Score = 33.0 bits (76), Expect = 0.46
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 37/214 (17%)
Query: 274 EKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCR 333
K + ++ + ++ L+ E+ L + EKEI LE EL E +
Sbjct: 67 PKLNPLREEKKK-VSVKSLEELIKDVEEE---LEKIEKEIKELEEEISELENEI-----K 117
Query: 334 ELQKQNKAIREENLQKFREEEEK---RKNVSVKL----------ENTLSEISNQVQESNN 380
EL+++ + + E F + K VSV + S++ N S +
Sbjct: 118 ELEQEIERL--EPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTD 175
Query: 381 KTM---------KLRGDNLDMAKK--FRELLIQYDEKEQELL-DYKAKYLEMQKTENGLR 428
K +L + + KK F L ++ + EL+ + K + E++K L
Sbjct: 176 KGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLL 235
Query: 429 KQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESM 462
+++ +KY E L EI ++E S
Sbjct: 236 EELKELAKKYLEELLALYEYLEIEL-ERAEALSK 268
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 38.5 bits (90), Expect = 0.009
Identities = 41/241 (17%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 8 KREKILKNKLDVKAVSNE----KASCSESNEKDKKTPETTTSESSVTNAPEKKELANVAN 63
++ + L+ K++ K+VS E + E +E D + + + + K +
Sbjct: 309 RQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDE 368
Query: 64 SPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV 123
+ ++ K EN E ++E DE + +
Sbjct: 369 ENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPE 428
Query: 124 LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKS 183
E E ESKK +K + +E+K D+ + E+++ KVE+ N +S + +++
Sbjct: 429 NGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
Query: 184 KESD-----KAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPD 238
+ + K + + K+ + KK+ + + + K KK+ D
Sbjct: 489 ELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Query: 239 T 239
Sbjct: 549 D 549
Score = 33.5 bits (77), Expect = 0.32
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 77 ESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEK 136
E+ K E+ K + +KKE DE + + E E+V +++LK EK K+EE+
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEE 487
Query: 137 TVDKKE-QEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQ 195
+E K K+ K K K +++ DK+ KI + K K +
Sbjct: 488 EELDEENPWLKTTSSVGKSAKKQDSKK--KSSSKLDKAANKISKAAVKVKKKKKKEKSID 545
Query: 196 KNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNK 229
+ +L + + + + E +++++ K K
Sbjct: 546 LDDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQK 579
Score = 33.1 bits (76), Expect = 0.41
Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 2/170 (1%)
Query: 31 ESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDT 90
E +++++ + + PE E + K EN+ + + ++ E E+
Sbjct: 405 EESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEE 464
Query: 91 VKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDK 150
K++ K + E E +E + + K K D K++ DK
Sbjct: 465 AKVEKVANKLLKRSEKAQKEEE--EEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDK 522
Query: 151 NMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKEL 200
+K A+KV++KK E + +D++ + ++ ++EL
Sbjct: 523 AANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEEL 572
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 38.8 bits (90), Expect = 0.009
Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 30 SESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKED 89
+E + ++ + + +L + + + + E+++ V +S NENS
Sbjct: 3824 AEDITNTLNEDDDLEELANEEDTANQSDL-DESEARELESDMNGVTKDSVVSENENS--- 3879
Query: 90 TVKIDTEVKKKEVDETVK------KNEVELKSKEEVKSEVLKEVEKESKKEE-------- 135
D+E + +++DE V N + K +E E L E E++S ++
Sbjct: 3880 ----DSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDL 3935
Query: 136 -------KTVDKKEQEQKNDDKNMKNE--NKDAIKVEEKKNNEGDKSVAKIE-------- 178
K ++ K++++K D++ M ++ D I+ + ++NN + + E
Sbjct: 3936 VSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS--QPPPENEDLDLPEDL 3993
Query: 179 -VDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNND 220
+D+K + K +D E + E + K E D + E +++ D
Sbjct: 3994 KLDEKEGDVSK-DSDLEDMDMEAADENKEEADAEKDEPMQDED 4035
Score = 35.4 bits (81), Expect = 0.10
Identities = 39/202 (19%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Query: 31 ESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDT 90
E NE+D E ++E S N + +L + + K+ + + + K +E D
Sbjct: 3910 EPNEEDLLETEQKSNEQSAAN--NESDLVSKEDDNKALEDK-----DRQEKEDEEEMSDD 3962
Query: 91 VKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDK 150
V ID E++ ++ E + E + + + L E E + K+ D + + +
Sbjct: 3963 VGIDDEIQP-DIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKE 4021
Query: 151 NMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQ 210
E + ++ E+ +++ E Q+ SD A+ D E+ N++ E ++
Sbjct: 4022 EADAEKDEPMQDEDP----LEENNTLDEDIQQDDFSDLAE-DDEKMNEDGFEENVQENEE 4076
Query: 211 KNKEGLKNNDKKQQQDKNKKQG 232
++G+K++++ +Q + + Q
Sbjct: 4077 STEDGVKSDEELEQGEVPEDQA 4098
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 37.3 bits (87), Expect = 0.019
Identities = 28/180 (15%), Positives = 70/180 (38%), Gaps = 5/180 (2%)
Query: 20 KAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESE 79
+ E A+ E+ +K KK + S+ +T K+ L + +P+ ++V
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 80 NKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKS-KEEVKSEVLKEVEKESKKEEKTV 138
T++ ++ D K T+ K + K+E ++K+
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 139 DKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKI----EVDQKSKESDKAKTDTE 194
+ +DD + +++ D +++ ++E D + D++ KE+ + + ++
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 37.3 bits (87), Expect = 0.023
Identities = 22/188 (11%), Positives = 62/188 (32%), Gaps = 10/188 (5%)
Query: 7 KKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPK 66
K + I K ++ S +K + ++ + + KK+ A +
Sbjct: 28 KSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAA 87
Query: 67 SENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKE 126
K ++ + + K E K + ++ + + +
Sbjct: 88 --------AKAPAKKKLKDELDSSKK--AEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Query: 127 VEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKES 186
+ + ++ D +++ DD + +++D K E K+ + + + S+
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197
Query: 187 DKAKTDTE 194
+A+ D +
Sbjct: 198 RQARKDAK 205
Score = 30.7 bits (70), Expect = 2.0
Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 2/195 (1%)
Query: 80 NKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVD 139
T E + + + K K++ K +KEE+K + + + + ++ +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAA--KSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Query: 140 KKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKE 199
+ DD + K K K + K++ + S + + K ++ +
Sbjct: 59 LSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Query: 200 LKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKT 259
+Q + + ++D D D + V KE +
Sbjct: 119 NYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKEL 178
Query: 260 DVMLQMFNDSQTPDE 274
+ + + D+
Sbjct: 179 EKLSDDDDFVWDEDD 193
Score = 28.8 bits (65), Expect = 9.8
Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 19/170 (11%)
Query: 77 ESENKTNENSKEDTVKIDTE-------VKKKEVDETVKK------------NEVELKSKE 117
+ + E + E+ K + K E +K+ ++V +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 118 EVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKI 177
VK KK+ KT K + K +K+E + K E+K + D + +
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 178 EVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDK 227
+ ++D D + + + ++ + D+ + E ++D + ++
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEE 171
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 37.6 bits (88), Expect = 0.020
Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 56/257 (21%)
Query: 293 LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFRE 352
+LL+ QN+ Q L+ ++ L +++ +++ L +LQ +AI + L
Sbjct: 201 QALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLS-- 258
Query: 353 EEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL- 411
E T+ E +Q + + + L L++ + + L++ EK L
Sbjct: 259 ------------EKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQ 306
Query: 412 -DYKAK-YLEM-QKTENGLRKQIS-----------MYGEKYDEFQQTLSRSNEIFAGFKS 457
+ + K +L+ ++E +++QIS +Y + QQ L ++ I
Sbjct: 307 QNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQ-----QQALPSADLI------ 355
Query: 458 EMESMSSKINKLEKETATWKQRWEK--SHEAYLE--MSNEKTKAESELITTCRQLAALLK 513
E ++ +I L E Q+ + +AY++ + K++ E+ L LL
Sbjct: 356 --EGLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVR---DALLQLLD 410
Query: 514 LCRTLQTERAEMLAKLN 530
ER E+L +LN
Sbjct: 411 -------ERRELLDQLN 420
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 36.5 bits (85), Expect = 0.037
Identities = 16/90 (17%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 315 TLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQ 374
TL +EL R++L L +N+A++ EN + + E+ + + +++ E++ +
Sbjct: 63 TLVAEVKEL-RKRLAKL----ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKE 117
Query: 375 VQESNNKTMKLRGDNLDMAKKFRELLIQYD 404
+++ ++ +L+G + ++ +L
Sbjct: 118 IEQLKSERQQLQGLIDQLQRRLAGVLTGPS 147
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 36.0 bits (83), Expect = 0.039
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 290 FNILSLLSKQNEKQIALLQNEKEILTLENSKQEL---------TREKLENLCRELQKQNK 340
LS L QN + + E+ L+ ++ L + L+ ELQ++ +
Sbjct: 49 KQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKE 108
Query: 341 AIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNL 390
+ E LQ RE +N +++LE+ L + Q + S N+ KLR N+
Sbjct: 109 QLENEELQYLREYNLFDRN-NLQLEDNLQSLELQYEYSLNQLDKLRKTNI 157
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 36.2 bits (84), Expect = 0.048
Identities = 21/115 (18%), Positives = 50/115 (43%)
Query: 113 LKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDK 172
+ EE + + L+ +E + ++ +EQKN + +K E + + EE+ N +
Sbjct: 811 IIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
Query: 173 SVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDK 227
+E K+ +K + K + + + + D+K + K + +K ++
Sbjct: 871 KNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
Score = 33.1 bits (76), Expect = 0.48
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 41 ETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVK--IDTEVK 98
+ S + NA + + + + + +++ + E ++ E+ +E I E
Sbjct: 770 DVIVSLFNNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEM 829
Query: 99 KKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQ-EQKNDDKNMKNENK 157
+E NE + K+E+K E+ + E E + + +K E E KND K + N+
Sbjct: 830 LMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKL-NKLI 888
Query: 158 DAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKEL 200
A V K ++ E+ Q K + K K D E+ ++E
Sbjct: 889 IAKDVLIK------LVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
>gnl|CDD|215078 PLN00150, PLN00150, potassium ion transporter family protein;
Provisional.
Length = 779
Score = 36.0 bits (83), Expect = 0.056
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 404 DEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463
D EQ L+ +++E++ + SM E N + +G ++ +
Sbjct: 625 DNFEQLLIASLERFIEIESFREQSDLE-SMAASWTPEELM--GEGNSVGSGLFTQYDQSD 681
Query: 464 SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERA 523
+ WK+ S E + + T+ E + C++ + L R
Sbjct: 682 INF----ATSQEWKR--PSSQEDSVSGHSSDTQDEVAFLNKCKEAGVVYILGNNDVKARK 735
Query: 524 EMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGL 556
+ +G + +I++Y+ F RR + +
Sbjct: 736 D-------SGFFKKVIINYIYTFLRRISRDSEV 761
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 35.9 bits (83), Expect = 0.066
Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 20/219 (9%)
Query: 15 NKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNV 74
+ D N S ++N+K T +++TS+S+ K L + N++
Sbjct: 56 SSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQ-----TNINQLLTK 110
Query: 75 KVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKE 134
+N + ++ +++++ E +K+ + +K +
Sbjct: 111 NKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKST---NDSNKNSDSSIKNDTDTQSSK 167
Query: 135 EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTE 194
+ D N N K + ++ + K + + + D A +
Sbjct: 168 QDKAD-------NQKAPSSNNTKPSTSNKQPNS---PKPTQPNQSNSQPASDDTANQKSS 217
Query: 195 QKNKELKN--VKKTEPDQKNKEGLKNNDKKQQQDKNKKQ 231
K+ + + + DQ +++ K Q K K
Sbjct: 218 SKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKT 256
Score = 32.8 bits (75), Expect = 0.54
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 19/210 (9%)
Query: 41 ETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKK 100
T + S + E + +S ++ N +N + S D+ D+
Sbjct: 34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIID 93
Query: 101 EVDETVK--KNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKD 158
+ + + L + + L + + + EQ + ++
Sbjct: 94 FIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKST------- 146
Query: 159 AIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEG--L 216
N+ S + I+ D ++ S + K D ++ T Q N
Sbjct: 147 --------NDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQ 198
Query: 217 KNNDKKQQQDKNKKQGKTSPPDTGASVNAV 246
N Q + K+S D + ++
Sbjct: 199 PNQSNSQPASDDTANQKSSSKDNQSMSDSA 228
Score = 29.8 bits (67), Expect = 4.5
Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 17/225 (7%)
Query: 81 KTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDK 140
+ + KK DET K S ++ + ++K
Sbjct: 27 ADDPQKDSTAKTTSHDSKKSNDDETSKDT-----SSKDTDKADNNNTSNQDNNDKKF--S 79
Query: 141 KEQEQKNDDKNMKNENKDAIKVEEKKN----NEGDKSVAKIEVDQKSKESDKAKTDTEQK 196
+D N+ + + N+ D + + + Q + +D EQ
Sbjct: 80 TIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQP 139
Query: 197 NKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEH 256
+ + + ++ K ++ KQ K +S N + +
Sbjct: 140 RNS------EKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNS 193
Query: 257 PKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNE 301
PK Q + + D + S K ++ D + S+L + +E
Sbjct: 194 PKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSE 238
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 35.2 bits (82), Expect = 0.091
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 88 EDTVKID-----TEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKE 142
ED K++ E ++E+++ ++ E LK E++K E+ ++ EK ++E+K +++ E
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572
Query: 143 QEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKN 202
+E + K K E + IK + G S K+ E +A+ + N++ +
Sbjct: 573 KEAQQAIKEAKKEADEIIKELRQLQKGGYAS-------VKAHELIEARKRLNKANEKKEK 625
Query: 203 VKKTEPDQKNKE 214
KK + +K +E
Sbjct: 626 -KKKKQKEKQEE 636
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 35.2 bits (81), Expect = 0.094
Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 66 KSENEVTNVKVESENKTNENSKEDTVKIDTEVKK--KEVDETVKKNEVELKSKEEVKSEV 123
K+E + ++K ++ ++ KE ++ E +K +E+++ K ELK E +E
Sbjct: 50 KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109
Query: 124 LKEVEKESKK---EEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNE 169
++++ + +EKT++ KEQ + K++ + K+EE+K E
Sbjct: 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAE 158
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 35.0 bits (81), Expect = 0.10
Identities = 43/273 (15%), Positives = 109/273 (39%), Gaps = 30/273 (10%)
Query: 221 KKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIIS 280
K + K++ + P +G S + A + + + + +E + +
Sbjct: 70 KLSKGPKDEPKQVKIPRQSGLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELL 129
Query: 281 QKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340
++ + D + L+S N+ ++ E + S +E+L+ L ++L +
Sbjct: 130 KETAS---DPVVQELVSIFNDLIDSI--KEDNLKDDLESLIASAKEELDQLSKKLAELKA 184
Query: 341 AIREE---NLQKFREEEEK--RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKK 395
EE L++ REE + + +LE+ + + Q++ + + ++ KK
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKE------ELRKK 238
Query: 396 FRELL-IQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTL-SRSNEIFA 453
+ E L + + + + L +Q E L++ EF + + + E
Sbjct: 239 YEEKLRQELERQAEAHEQKLKNELALQAIE--LQR----------EFNKEIKEKVEEERN 286
Query: 454 GFKSEMESMSSKINKLEKETATWKQRWEKSHEA 486
G +++ ++S++ LEK + + +++H+
Sbjct: 287 GRLAKLAELNSRLKGLEKALDSRSEAEDENHKV 319
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 35.1 bits (82), Expect = 0.11
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 319 SKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQES 378
+K + E+ + + E +K+ +AI++E L + +EE K +N + E L E N++Q+
Sbjct: 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRN---EFEKELRERRNELQKL 87
Query: 379 NNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKY 438
+ ++ + +NLD +K L EK +E L+ K K LE ++ E L K+ E
Sbjct: 88 EKRLLQ-KEENLD--RKLELL-----EKREEELEKKEKELEQKQQE--LEKKEEELEELI 137
Query: 439 DEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKET 473
+E Q L E +G +E E+ + K+E+E
Sbjct: 138 EEQLQEL----ERISGLTAE-EAKEILLEKVEEEA 167
Score = 33.2 bits (77), Expect = 0.34
Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 107 KKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKK 166
K E ++K EE +L+E +KE++ +K + E K + ++NE + ++ +
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKK---EALLEAKEEIHKLRNEFEKELRERRNE 83
Query: 167 NNEGDKSVAKIE--VDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQ 224
+ +K + + E +D+K + +K + + E+K KEL+ K+ E ++K +E L+ ++Q
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ-KQQELEKKEEE-LEELIEEQL 141
Query: 225 Q 225
Q
Sbjct: 142 Q 142
Score = 33.2 bits (77), Expect = 0.39
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 96 EVKKKEVDETVKKNEVELK-----SKEEVKSEVLKEVEKESKKE-EKTVDKKEQEQK 146
E K++E++E +++ EL+ + EE K +L++VE+E++ E + + E+E K
Sbjct: 127 EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183
Score = 29.7 bits (68), Expect = 4.2
Identities = 23/103 (22%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 66 KSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEV---KSE 122
+++ E +K E+ + E + + + E++++ + ++K E L KEE K E
Sbjct: 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE--LQKLEKRLLQKEENLDRKLE 103
Query: 123 VLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEK 165
+L++ E+E +K+EK +++K+QE + ++ ++ ++ ++ E+
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 29.7 bits (68), Expect = 4.9
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 99 KKEVDETVKKNEVELKSKEEV---KSEVLKEVEKE----SKKEEKTVDKKEQEQKNDDKN 151
KKE + K E L++KEE+ ++E KE+ + K E++ + K+E + +
Sbjct: 48 KKEAEA--IKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
Query: 152 MKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQK 196
K E ++E+K+ K + E+++K +E ++ + Q+
Sbjct: 106 EKREE----ELEKKEKELEQK---QQELEKKEEELEELIEEQLQE 143
Score = 29.4 bits (67), Expect = 5.6
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 299 QNEKQIALLQNEKEILTLEN--------------SKQELTREKLENLCRELQKQNKAIRE 344
+ K+ ALL+ ++EI L N ++ +K ENL R+L+ K RE
Sbjct: 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK--RE 109
Query: 345 ENLQKFREEEEKRKNVSVKLENTLSEISNQVQE 377
E L+K +E E+++ K E L E+ + +
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 35.0 bits (80), Expect = 0.11
Identities = 38/183 (20%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 75 KVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKE 134
+ +N+ N + D T++K++E E K+ + LK + + K + ++++
Sbjct: 185 ALREDNEKGVNFRRDM----TDLKERESQEDAKRAQQ-LKEELDKKQIDADKAQQKADFA 239
Query: 135 EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTE 194
+ DK+ E + + KN K A K+ DK VA + + +E +KA+ + +
Sbjct: 240 QDNADKQRDEVRQKQQEAKNLPKPADTSSPKE----DKQVA----ENQKREIEKAQIEIK 291
Query: 195 QKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSP--PDTGASVNAVKTPAVS 252
+ ++E K + +E K ++K+ + + + Q K P D + V+ S
Sbjct: 292 KNDEEALKAKDHKAFDLKQES-KASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTS 350
Query: 253 IKE 255
+ E
Sbjct: 351 LNE 353
Score = 30.7 bits (69), Expect = 2.0
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 115 SKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSV 174
S ++V + ++ EK D KE+E + D K + ++ +KK + DK
Sbjct: 178 SDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEEL----DKKQIDADK-- 231
Query: 175 AKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKT 234
A+ + D +DK + + QK +E KN+ K KE DK+ +++ ++ K
Sbjct: 232 AQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKE-----DKQVAENQKREIEKA 286
Score = 29.6 bits (66), Expect = 4.7
Identities = 22/156 (14%), Positives = 58/156 (37%), Gaps = 17/156 (10%)
Query: 68 ENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSE----- 122
E++ + + + + + D K + + + +++EV K +E
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
Query: 123 ----VLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIE 178
K+V + K+E + + ++ + K+ +K E K + + E
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEK--------E 318
Query: 179 VDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKE 214
+ K E+ K + + ++ K + +P N++
Sbjct: 319 AEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNED 354
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 34.3 bits (79), Expect = 0.14
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 131 SKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAK 190
S T K Q N+ +K+ +E + VA S + DK +
Sbjct: 10 SFFSGTTQKSKLQPISYIYSNVLVLSKE----ILSTFSEEENKVAT-----TSTKKDKKE 60
Query: 191 TDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPP 237
+ K+ + KK + ++K + + K K+ K PP
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPP 107
Score = 33.9 bits (78), Expect = 0.19
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 75 KVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKE 134
+ ++ + +E + K + KK K +++ K +K+ KK+
Sbjct: 23 PISYIYSNVLVLSKEILSTFSEEENKVATTSTKK----DKKEDKNNESKKKSEKKKKKKK 78
Query: 135 EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNE 169
EK K E E K K K K K + K NE
Sbjct: 79 EKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 32.4 bits (74), Expect = 0.62
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 116 KEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVA 175
+ E+L +E K T KK+ K +DKN +++ K K ++KK + KS
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKD---KKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Query: 176 KIEVDQKSKESDKAKTDTEQKNKELKNV 203
+ ++ K+ + K K K ++V
Sbjct: 88 ETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Score = 31.2 bits (71), Expect = 1.3
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 70 EVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEK 129
V + E + +E + + KK++ + KK + K K++ K E + E
Sbjct: 30 NVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKE--PKSEG 87
Query: 130 ESKKEEKTVDKKEQEQKNDDKNMKNENKD----AIKVEEKKNN 168
E+K KT K ++ +K K NE+ D I +K+N
Sbjct: 88 ETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSN 130
Score = 28.9 bits (65), Expect = 9.0
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 128 EKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIK-VEEKKNNEGDKSVAKIEVDQKSKES 186
K + ++ + ENK A ++ K + + K +K K+
Sbjct: 19 SKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKK 78
Query: 187 DKA--KTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVN 244
+K K++ E K K + +K + N D +K + + S GA V+
Sbjct: 79 EKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVYIGAHVS 138
Query: 245 AVKTPAVSI 253
A S
Sbjct: 139 ASGGVDNSP 147
Score = 28.5 bits (64), Expect = 9.1
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 37 KKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTE 96
K + + S K+ L+ + + K + E+K NE+ K+ K +
Sbjct: 18 KSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKK 77
Query: 97 VKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNEN 156
+KKE + E ++K K+ + K+ + K + + + + N
Sbjct: 78 KEKKE-------PKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSN 130
Query: 157 K 157
Sbjct: 131 V 131
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.1 bits (79), Expect = 0.18
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 88 EDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKN 147
E+ ++ T KK + E K +EE K + K + K+EE+ +K+++E++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 148 DDKNMKNENKDAIKVEEKKN 167
+++ + E + + E+KK
Sbjct: 456 EEEEEEAEEEKEEEEEKKKK 475
Score = 33.7 bits (78), Expect = 0.25
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 85 NSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQE 144
SK+ T KI V+K E +K E + K+ K E +E EKE K+EEK +++E E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 145 QKNDDK 150
++ +++
Sbjct: 464 EEKEEE 469
Score = 33.4 bits (77), Expect = 0.36
Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 115 SKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSV 174
++EE++ L +K +KK +K V+K E++++ + K K + K EE++ E +K
Sbjct: 395 TEEEIE--FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Query: 175 AKIEVDQKSKESDKAKTDTEQKN 197
+ E +++ E +K + + ++K
Sbjct: 453 EEKEEEEEEAEEEKEEEEEKKKK 475
Score = 33.0 bits (76), Expect = 0.49
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 108 KNEVEL--KSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEK 165
+ E+E SK+ K + E K+EE+ +KK++ K E ++ K +++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA---GKKKEEEEEEEKEKKE 452
Query: 166 KNNEGDKSVAKIEVDQKSKESDKAKT 191
+ E ++ A+ E +++ ++ K T
Sbjct: 453 EEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 30.7 bits (70), Expect = 2.4
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 54 EKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVEL 113
++E+ + S K+ ++ + ++E K E KE K KK+E +E
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE--------- 445
Query: 114 KSKEEVKSEVLKEVEKESKKEEKTVDKKE 142
+E+ K E KE E+E +EEK ++++
Sbjct: 446 --EEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 29.1 bits (66), Expect = 7.5
Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 163 EEKKNNEGDKSVAK----IEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKN 218
EE + G K K I + K ++ K ++ K ++ E +++ KE K
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Query: 219 NDKKQQQDKNKKQGKTSPPDTG 240
++++ +++ +++ +
Sbjct: 457 EEEEEAEEEKEEEEEKKKKQAT 478
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 34.1 bits (78), Expect = 0.21
Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 12/263 (4%)
Query: 97 VKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKN---MK 153
V + E+ N K + + +K +K + KK + +KN
Sbjct: 350 VFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFD 409
Query: 154 NENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKN--VKKTEPDQK 211
K I +KK N+ +K + + KE K + ++ L N + K + K
Sbjct: 410 TLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDELLDNLELAKQKFFNK 469
Query: 212 NKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQT 271
+ E KN +K + KN++ + S D +K + + P ++
Sbjct: 470 DIELSKNMLQKFNKFKNEESAENSFIDI------IKQADLVLWVSPNALILGVEDLGLIE 523
Query: 272 PDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENL 331
K + ++ FN L+ ++KQ + N K N ++ + L+ L
Sbjct: 524 LINKVNESFEFIKTIFKKFNKNKLVIAISKKQATKITNIKNQKLKTNIINDVDIDDLKML 583
Query: 332 CRELQKQNKAIREENLQKFREEE 354
++ +K K + L + +EE
Sbjct: 584 IKK-EKTRKQEVDALLSEIEDEE 605
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 32.7 bits (75), Expect = 0.24
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 300 NEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKN 359
KQ+ LL+ E E K ++LE + L+++ + + R E +
Sbjct: 39 ELKQLELLEEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEVLE 98
Query: 360 VSVKLENTLSEISNQVQESN 379
+ L+++L E+S + N
Sbjct: 99 ENELLQDSLLELSERNFSPN 118
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.7 bits (78), Expect = 0.26
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 299 QNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAI--REENLQKFREEEEK 356
+ K+ ALL+ ++E+ L + +E+ ELQ+ + + REE L + E +K
Sbjct: 46 ETLKKEALLEAKEEVHKLRAELERELKERRN----ELQRLERRLLQREETLDRKMESLDK 101
Query: 357 RKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAK 416
++ K E LS + E + +L A++ EL E+ L +AK
Sbjct: 102 KEENLEKKEKELSNKEKNLDEKEEELEELI------AEQREEL-----ERISGLTQEEAK 150
Query: 417 YLEMQKTENGLRKQISMYGEKYDE 440
+ +++ E R + + ++ +E
Sbjct: 151 EILLEEVEEEARHEAAKLIKEIEE 174
Score = 33.4 bits (77), Expect = 0.33
Identities = 24/117 (20%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 84 ENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKE- 142
+++E +I +++ + + K E L++KEEV ++ E+E+E K+ + + E
Sbjct: 28 GSAEELAKRI---IEEAKKEAETLKKEALLEAKEEVH-KLRAELERELKERRNELQRLER 83
Query: 143 ---QEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQK 196
Q ++ D+ M++ +K +E+K+ +K + +D+K +E ++ + ++
Sbjct: 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNK---EKNLDEKEEELEELIAEQREE 137
Score = 32.2 bits (74), Expect = 0.90
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 69 NEVTNVKVESENKTNENSKEDTVKIDTEVKKKEV-----DETVKKNEVELKSKEEVKSEV 123
EV ++ E E + E + + +++ + ++E E++ K E L+ KE+ S
Sbjct: 58 EEVHKLRAELERELKER-RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116
Query: 124 LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAI--KVEEKKNNEGDKSVAKIEVDQ 181
K ++++ ++ E+ + ++ +E + + E K+ + +VEE+ +E K + +IE +
Sbjct: 117 EKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEA 176
Query: 182 KSKESDKAKT 191
K + KAK
Sbjct: 177 KEEADKKAKE 186
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 33.5 bits (77), Expect = 0.29
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 117 EEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDD---------KNMKNENKDAIKVEEKKN 167
E ++EV ++ ++ +K K +KK ++ +DD +N + ENK K ++KK
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 168 NEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVK 204
+ K D + Q N ++ +
Sbjct: 64 KKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLG 100
Score = 32.4 bits (74), Expect = 0.75
Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 81 KTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDK 140
NEN + + + + K+K + KK++ ++ + +E++ E +E++ ++ K
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISEN-QEAENKQNNKKK 59
Query: 141 KEQEQKNDDKNMKNENKDA--IKVEEKKNNEGDKSVAKIEVDQKSKE 185
K++++K KN+ A + V D S + + +E
Sbjct: 60 KKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQE 106
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 33.9 bits (78), Expect = 0.29
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 290 FNILSLLSKQNEKQIALLQNEKEILTLENSK---QELTREK--LENLCRELQKQNKAIRE 344
+ L L++ + E +I L+ +EN + + + R K L N+ E + ++
Sbjct: 894 ISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL 953
Query: 345 ENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYD 404
L K E E K K S + E+ L + + V+E N +L+ ++A+ ++ +
Sbjct: 954 PELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQE 1013
Query: 405 EKEQ 408
+Q
Sbjct: 1014 STKQ 1017
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 33.6 bits (77), Expect = 0.31
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 96 EVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNE 155
+KE+++ + E LK +E++K E+ +E+E+ ++E + E+E + K +K E
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Query: 156 NKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPD 209
+ I+ ++K K + IE K K E K K + + D
Sbjct: 581 VESIIRELKEKKIHKAKEIKSIEDLVKLK---------ETKQKIPQKPTNFQAD 625
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 32.6 bits (75), Expect = 0.33
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 310 EKEILTLENSKQELTREK--LENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENT 367
E+EI LE K+EL + LE ++K+ + R+ ++ +E K + +L++
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQ 185
Query: 368 L 368
L
Sbjct: 186 L 186
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 33.6 bits (77), Expect = 0.38
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 116 KEEVKSEV---LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDK 172
+ +VK +V + E E + ++ +E K ++N +K + K NE
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 173 SVAKIEVDQKSKESDKAKTDTEQKNK 198
+ ++ +E K + + K+K
Sbjct: 916 AQERMPGADSPEELMKRAKEYQDKHK 941
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 33.2 bits (76), Expect = 0.40
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 73 NVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESK 132
K+ E K+N + D + + K++ + KK + + K E++ K
Sbjct: 349 LTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Query: 133 KEEKTVDKKEQEQKNDDKNMKNENKD 158
+EE +KEQ ++ +K K+E K
Sbjct: 409 QEENEKKQKEQADEDKEKRQKDERKK 434
Score = 30.5 bits (69), Expect = 2.3
Identities = 16/80 (20%), Positives = 41/80 (51%)
Query: 87 KEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQK 146
+ VK +T++ + E +K+ +L+ + EV E + + E K ++K ++++
Sbjct: 352 LYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE 411
Query: 147 NDDKNMKNENKDAIKVEEKK 166
N+ K + ++D K ++ +
Sbjct: 412 NEKKQKEQADEDKEKRQKDE 431
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 33.0 bits (75), Expect = 0.43
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Query: 95 TEVKKKEVDETVKKNEV--ELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNM 152
+ KK E K+ +V ELK K+ + E LK++EKE K ++ + E+ +K
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQ 131
Query: 153 KNENKDAIK--VEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQ 210
K + + A K E+KK E K+ A E + ++ K E + K E
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAA 191
Query: 211 KNKEGLKNNDKKQQQDKNKKQGK 233
K+ ++ K + + K
Sbjct: 192 AKKKAEAEAKAAAEKAKAEAEAK 214
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 33.0 bits (75), Expect = 0.47
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 132 KKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKT 191
+ E ++ ++ Q+ DD+ +N+ E K DK + + S +++
Sbjct: 5 NRREANINNNDRMQEKDDEKQDQKNR-----MELKEKVLDKKEEVVTDNVDSPVKEQSSQ 59
Query: 192 DTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSP 236
+ + E+K K E Q E LK ++ Q++ + + KT P
Sbjct: 60 ENLKIADEVKKSTKEESKQLL-EVLKTKEEHQKEIQYEILQKTIP 103
Score = 31.4 bits (71), Expect = 1.4
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 78 SENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKT 137
N+ N + D ++K+ ++ +KN +ELK E+V + + V K
Sbjct: 3 YRNRREANINNN----DRM-QEKDDEKQDQKNRMELK--EKVLDKKEEVVTDNVDSPVKE 55
Query: 138 VDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKN 197
+E + D E K + K E K+ E K+ + + + + + K E K
Sbjct: 56 QSSQENLKIAD------EVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKE 109
Query: 198 KELKNVKKTEPDQKNK 213
LK ++ +P+Q K
Sbjct: 110 SILKKLEDIKPEQAKK 125
>gnl|CDD|221170 pfam11696, DUF3292, Protein of unknown function (DUF3292). This
eukaryotic family of proteins has no known function.
Length = 641
Score = 32.8 bits (75), Expect = 0.48
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 36 DKKTPETTTSESSVTNAPEK-------KELANVANSPKSENEVTNVKVES------ENKT 82
K S S+T APEK +E +N+ NS V V V S +
Sbjct: 180 QKPKAGVLGSHDSITGAPEKYKGEAAEQEASNLVNS------VATVAVGSAAGKHDQGTP 233
Query: 83 NENSKEDTVKIDTEVKKKEVD-----ETVKKNEVELKSKEEVKSEVLK 125
E +V +V K D + K++E +K VL
Sbjct: 234 EGAPMESSVPDAMDVVAKAADAQAAAAGEVPADTHDKTREPMKKTVLN 281
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 32.7 bits (75), Expect = 0.55
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 366 NTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKE--QELLDYKAKYLEMQKT 423
++S + QV + ++ +A FR+LL + +E + +L +Y+ E
Sbjct: 344 KSVSRVFGQVTDPKHR---------QLAAAFRKLLTRLEELQLFIDLGEYRRG--ENADN 392
Query: 424 ENGLRKQISMYG------EKYDEFQQTLSRSNEIFA 453
+ + K+ ++ + F TL R NE A
Sbjct: 393 DRAMDKRPALEAFLKQDVAEKSSFSDTLERLNEFAA 428
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 32.7 bits (74), Expect = 0.63
Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Query: 59 ANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEE 118
+ + + T + E+E + E+ E ++ + + K + K E E +++
Sbjct: 751 GKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAG 810
Query: 119 VKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIE 178
K E + E ++ E + EQE + EN+ K +EK + G S
Sbjct: 811 EKDEHEGQSETQADDTEVKDETGEQE-------LNAENQGEAKQDEKGVDGGGGSDGGDS 863
Query: 179 VDQKSKESDKAKTDTEQKNKELKNVKKTEP 208
+++ +E ++ + + E++ +E + + EP
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
>gnl|CDD|206339 pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin
system. SpoIISA is a toxin which causes lysis of
vegetatively growing cells. It forms part of a type II
toxin-antitoxin system, where the SpoIISB protein,
pfam14185, acts as an antitoxin. It is a transmembrane
protein, with a cytoplasmic domain accounting for
approximately two-thirds of the protein. The structure
of the cytoplasmic domain resembles that of the GAF
domains, Pfam: PF01590. SpoIISB binds to the cytoplasmic
domain of SpoIISA with high affinity.
Length = 240
Score = 32.0 bits (73), Expect = 0.68
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 23/80 (28%)
Query: 366 NTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELL------IQYDEKEQELLDYKAKYLE 419
N L + + E+NN+T+ L+ K F+ LL + Y KE Y+E
Sbjct: 92 NELETDTEKTLEANNETL---HMYLNRLKNFQYLLKNEPIHVYYGSKE--------AYIE 140
Query: 420 MQKTENGLRKQISMYGEKYD 439
GL++ +++Y +K D
Sbjct: 141 ------GLKELLALYADKMD 154
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 32.3 bits (74), Expect = 0.72
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 418 LEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKIN---KLEKETA 474
E +K+ LR Q+ + + + + L+ + ++E +S ++ KL+++
Sbjct: 135 FESRKST--LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGL 192
Query: 475 TWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAAL-LKLCRTLQTERAEMLAKLNGA 532
+ + E E + E+EL RQ+ L L+ + QT R E+L +L A
Sbjct: 193 VSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEA 251
Score = 29.2 bits (66), Expect = 5.8
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 307 LQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLEN 366
L+ + E++ + + E L+ + L++Q + I EE L+ R+ +EK VS
Sbjct: 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEE-LEARRKLKEK-GLVS---RL 196
Query: 367 TLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENG 426
L E+ + E+ EL E E LE Q+ E
Sbjct: 197 ELLELERERAEAQ-----------------GELGRLEAELEVLKRQIDELQLERQQIEQT 239
Query: 427 LRKQISMYGEKYDEFQQTLSRSNE 450
R+++ E+ E Q L+ E
Sbjct: 240 FREEVL---EELTEAQARLAELRE 260
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 31.8 bits (73), Expect = 1.1
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 112 ELKSKEEVK--SEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKN-- 167
E K KEE+K +L + +E +E+K ++++ EQ + D +K++ K+ + EEK+
Sbjct: 493 EKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEKD 552
Query: 168 ---NEGDKSVAKIEVDQKSKESDKAK 190
E + KI VD + S+ A+
Sbjct: 553 KETEEDEPEGPKIIVDSRELRSNVAR 578
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 30.9 bits (70), Expect = 1.2
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 104 ETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVE 163
E K ++ E EEVK E EKE+ E DK + E+++++ +NE +D +
Sbjct: 50 EAKKSDDQETAEIEEVKEE-----EKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Query: 164 EKKNNEGDKSVAKIE 178
E + +K+ + +E
Sbjct: 105 ENEKETEEKTESNVE 119
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 30.5 bits (69), Expect = 1.4
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 270 QTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLE 329
+ + + Q+ SEL + L L ++ + + L++ KE L L + E+LE
Sbjct: 75 EELQGELSELKQQLSELQEE---LEDLEERIAELESELEDLKEDLQLLRELLKSLEERLE 131
Query: 330 NLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
+L +++ K +RE E EE R+ + +L+ L + +QE +
Sbjct: 132 SLEESIKELAKELRELRQDLREEVEELREELE-RLQENLQRLQEAIQELQS 181
Score = 28.6 bits (64), Expect = 6.5
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 291 NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKF 350
+ L + +E + L + ++E+ LE EL E LE+L K + +
Sbjct: 73 KLEELQGELSELKQQLSELQEELEDLEERIAELESE-LEDL--------KEDLQLLRELL 123
Query: 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQEL 410
+ EE+ +++ ++ E+ Q+ + +LR + + + + L E + L
Sbjct: 124 KSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLL 183
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 31.2 bits (71), Expect = 1.6
Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 74 VKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKES-- 131
+ V +++ + T+K + + +E++ V+ E ++ + V E ES
Sbjct: 460 LNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLI 519
Query: 132 ---KKEEKTVDKKEQEQKNDDKNMKNENKDAIKVE----EKKNNEGDKSVAKIE 178
+K K + K +E+K + + ++A++ E + K E + K+
Sbjct: 520 YSLEKALKEIVKVSEEEKEKIEEAITDLEEALEGEKEEIKAKIEELQEVTQKLA 573
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 31.2 bits (71), Expect = 1.6
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 96 EVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNE 155
K K KE S K+++ ES E ++E ++ +++
Sbjct: 447 GAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEML---EEEAKKDDEEVQETQL 503
Query: 156 NKDAIKVEEKKNNEGDKSVAKIEVDQKS 183
+ E NNE AK KS
Sbjct: 504 KEATELQEFMINNEDLIEEAKELFGIKS 531
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 31.3 bits (72), Expect = 1.6
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 66 KSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLK 125
K NE+ ++ ++ + + E+D++ ++ E KEE ++ K
Sbjct: 129 KVNNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAK 188
Query: 126 EVEKESKKEEKTVDKKEQEQKNDDKN----MKNENKDAIKVEEKKNNEGDKSV 174
E + KK E K+ + + K + ++ ++E E V
Sbjct: 189 EALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEERRVVV 241
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 30.4 bits (68), Expect = 1.6
Identities = 20/88 (22%), Positives = 48/88 (54%)
Query: 105 TVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEE 164
+VKK++++ K ++ E +++ +E ++ E+ ++ + +E+K D++ + E + + +
Sbjct: 109 SVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQT 168
Query: 165 KKNNEGDKSVAKIEVDQKSKESDKAKTD 192
+ D IE D+ ESD KT+
Sbjct: 169 IEEQSDDSEHEIIEQDESETESDDDKTE 196
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.5 bits (71), Expect = 1.7
Identities = 55/355 (15%), Positives = 135/355 (38%), Gaps = 15/355 (4%)
Query: 73 NVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESK 132
+ K +E K ++E+ K E+ ++ + + + +E ++ E E+
Sbjct: 666 KASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEE--- 722
Query: 133 KEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEG-----DKSVAKIEVDQKSKESD 187
V + + + + K ++ + K+ + EEK + +KS ++ + ++E +
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782
Query: 188 KAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVK 247
K + ++ KE K + E + +E LK + ++++ + + + A++
Sbjct: 783 KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 842
Query: 248 TPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALL 307
K + L+ + T +E + + K EL K +
Sbjct: 843 L-KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEL------EEQKLKDELESKEEK 895
Query: 308 QNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENT 367
+ E++ E S+++ E+ EN E + I + + E + + K E+
Sbjct: 896 EKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDN 955
Query: 368 LSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422
E + + +L NL +F E +Y++ E + + + E+ +
Sbjct: 956 KEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
Score = 31.1 bits (70), Expect = 2.2
Identities = 54/337 (16%), Positives = 122/337 (36%), Gaps = 4/337 (1%)
Query: 98 KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENK 157
KKKE + + + L E+ + K ++ +K ++ + ++K + +
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYL 230
Query: 158 DAIKVEEK--KNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEG 215
D +K+ E+ + + E++ +E +K + Q KE K +K + Q+ +
Sbjct: 231 DYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELK 290
Query: 216 LKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEK 275
L ++++ + + K + D + K KE ++ + E
Sbjct: 291 LLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKE--LKKEKEEIEELEKELKEL 348
Query: 276 FKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCREL 335
+ E + L + E+ +A + E E L+ +E E +E
Sbjct: 349 EIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEA 408
Query: 336 QKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKK 395
+ + +E E++E+ K V E+ ++ +E + D +
Sbjct: 409 KLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLEL 468
Query: 396 FRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQIS 432
+ + + K +LL+ L QK E +K+
Sbjct: 469 KKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESK 505
Score = 29.2 bits (65), Expect = 8.5
Identities = 44/315 (13%), Positives = 120/315 (38%), Gaps = 2/315 (0%)
Query: 77 ESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEK 136
E+EN + +K+ K++ + ++ +++ K + E ++ + + K +++
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERID 241
Query: 137 TVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQK 196
+ + ++++ + ++ K E + ++ + E + + ++ ++ + + + +
Sbjct: 242 LLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKS 301
Query: 197 NKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEH 256
+K + ++K KE K K +++ K +K+ + + +E
Sbjct: 302 ELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Query: 257 PKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLS--KQNEKQIALLQNEKEIL 314
+ + + +K + S L L + ++ K + L ++E L
Sbjct: 362 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDL 421
Query: 315 TLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQ 374
E K+EL + E ++ +E L+K + K K K E+ L E
Sbjct: 422 LKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLV 481
Query: 375 VQESNNKTMKLRGDN 389
+ + LR
Sbjct: 482 KLLEQLELLLLRQKL 496
>gnl|CDD|234426 TIGR03975, rSAM_ocin_1, bacteriocin maturation radical SAM protein
1. Models TIGR03793 and TIGR03798 describe bacteriocin
precursor families to occur often in large paralogous
families and are subject to various modifications,
including by LanM family lantibiotic synthases and by
cyclodehydratases. This model represents a radical SAM
protein family that regularly occurs in the context of
these bacteriocins, and may occur where other familiar
peptide modification enzymes are absent [Cellular
processes, Toxin production and resistance].
Length = 606
Score = 31.1 bits (71), Expect = 1.9
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 466 INKLEKETATWKQRWEKSHEAYLEMSN--------EKTKA---ESELITTCRQLAALLKL 514
+ L++ W++ W+ + L M E T+ E T A + +L
Sbjct: 501 VAALDRAVNAWQEAWQAENPPRLSMYFDEGDRITIEDTRPCAVAREYRLTGL-AAQVYQL 559
Query: 515 CRTLQTERAEMLAKLNGAG 533
C + +E A +L KL+ A
Sbjct: 560 CDSPVSE-ARLLEKLDEAS 577
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.9 bits (70), Expect = 1.9
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 98 KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENK 157
+++ + ++ EL+ K+ + E LK++EKE ++ + E+ K K
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA-- 134
Query: 158 DAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLK 217
EE + AK E + K + K E K K K + K+
Sbjct: 135 -----EEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEA 189
Query: 218 NNDKKQQQDKNKK 230
K + KK
Sbjct: 190 EAAAKAAAEAKKK 202
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 31.1 bits (71), Expect = 2.0
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE--LQKQNKAIREE 345
+ K+ +K + LL+ E E+L L+N + EK+E RE L++Q KAI++E
Sbjct: 187 IEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKE 238
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 30.9 bits (70), Expect = 2.1
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 121 SEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVD 180
SE+LKE K+ KE+ ++E+E+ + DK + K+ K+ A+I+ +
Sbjct: 361 SELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKN-----AEIKEE 415
Query: 181 QKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQD 226
+ K++ + + E+K++KK P + +E K +K++++
Sbjct: 416 EGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERP 461
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 30.7 bits (69), Expect = 2.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 62 ANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKK-KEVDETVKKNEVELKSKEEVK 120
AN + + E + K KE+ ++ VKK KE E++ K K E+K
Sbjct: 451 ANMVYPGHPQEHGH-ERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKSEIK 509
Query: 121 SEVLKE 126
E
Sbjct: 510 KIAESE 515
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 30.3 bits (68), Expect = 2.3
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 360 VSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLE 419
V +L+N L + + + M L+ D ++ +K EL + +E +EL + +A+Y E
Sbjct: 108 VRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167
Query: 420 MQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSS-KINKLEKETA 474
+Q+ L + S E + + + + + +E I+ L KET
Sbjct: 168 VQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETL 223
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 30.1 bits (68), Expect = 2.5
Identities = 18/69 (26%), Positives = 25/69 (36%)
Query: 163 EEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKK 222
EK DK +I S++ K K + + VKK +K +E K KK
Sbjct: 18 SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Query: 223 QQQDKNKKQ 231
N Q
Sbjct: 78 VPLQVNPAQ 86
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.6 bits (69), Expect = 2.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 115 SKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSV 174
S+ E K +E+E++ KKEEK +K+ ++ K K K K++ ++ ++G
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK------AKLQAQQASDGTNV- 58
Query: 175 AKIEVDQKSKESDKAKTDTEQKNKE 199
K E K D E +N E
Sbjct: 59 ------PKKSEKKSRKRDVEDENPE 77
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 30.4 bits (69), Expect = 2.8
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
EKF I S K + + L Q + LQ E+ E+ +LEN
Sbjct: 197 KEKFTIESLKLQQQIKELLKNELEGLQEK-----LQRALELFMAEDGLAP----RLENFQ 247
Query: 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDM 392
+LQ ++ I+E Q E K ++ + + + KLR +
Sbjct: 248 LDLQNIDELIQESLAQADWNELRKAVAAFKFKNLKAAKGDEEDADLLEEADKLREEAKKQ 307
Query: 393 AKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDE 440
+K + E+ D+ EM+ L + + + E++
Sbjct: 308 LEKLKTDYFTRSEE-----DHLRIMQEMKPVVKTLVQLVKDFIERFGA 350
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 30.6 bits (69), Expect = 2.9
Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 99 KKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKD 158
+ V+ + K+ + KE+ + +K ++ + + +++ ++ E +
Sbjct: 17 RTTVESSQKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEA 76
Query: 159 AIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNK---ELKNVKKTE 207
++E ++N + I ++ D K E +N++K E
Sbjct: 77 EDEIEVEQNQSDVLKSSSIVKEESISTDMDGIDDDSLDRKLKLERENLRKRE 128
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.5 bits (69), Expect = 2.9
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 406 KEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSK 465
K++ ++ K K E + E + + + D F++ + +S+ S S
Sbjct: 50 KDEGIIGDKMKAYEQEALEQKQKDKKRTLQDLADSFEK---------SDKESQDYSSSDS 100
Query: 466 INKLE----KETATWKQRWEKSHEAYLEMSNE--------KTKAESELITTCRQLAALLK 513
E ETA + S AY +++ E KT E EL+ +L + L
Sbjct: 101 GFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESRLA 160
Query: 514 LCRTLQTERAEMLAKL 529
+ E E LA +
Sbjct: 161 TEPSPAPELEEQLALM 176
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.0 bits (68), Expect = 3.1
Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 291 NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKF 350
L+ + E + + + K+E+ E+ EL++ R +
Sbjct: 55 GKLAADLLKLEVARKKERLNQIRARISQLKEEI--EQKRERIEELKRALAQRRSDLSSAS 112
Query: 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFREL 399
+ E++R + KL++ + +++ ++ + R + REL
Sbjct: 113 YQLEKRRASQLEKLQDEIKRTRSKLNALHSLLAEKR------SFLCREL 155
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 30.4 bits (69), Expect = 3.1
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 56 KELANVANSPKSENE-VTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELK 114
KE+ + K+E+ N ++ E + +K++ K + +EVE+
Sbjct: 730 KEIIVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKG----AINFSEVEVV 785
Query: 115 SKEEVKSEVLKEVEKESKK--EEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDK 172
++ +E + E+ + K + K +E K + E K+ I++E K NEG
Sbjct: 786 IEKPEVTEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFV 845
Query: 173 SVAKIEVDQKSKESDK 188
A EV +K KE +
Sbjct: 846 KKAPKEVIEKEKEKLE 861
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 29.6 bits (67), Expect = 3.2
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 319 SKQELTREKLENLCRE---LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQV 375
S RE+L L +E LQ++ ++E+ E ++ + +TL ++
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQL-----AELQQENQELKQELSTLEAELERL 113
Query: 376 QESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTEN 425
Q+ + +L + +++ ++ REL + E +QE +A+ +Q+ E
Sbjct: 114 QKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 30.3 bits (69), Expect = 3.3
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 101 EVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAI 160
E+DE +K EL+ + ++E+ KE+ + K+ E ++ E K +K + K+
Sbjct: 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEV----KELKEKLKELE 88
Query: 161 KVEEKKNNEGDKSVAKI 177
++ E D + I
Sbjct: 89 AALDELEAELDTLLLTI 105
Score = 28.7 bits (65), Expect = 8.3
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 322 ELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLE------NTLS-EISNQ 374
+L RE + + +L+K+ ++ K E +E+R+ + +LE N LS EI
Sbjct: 5 KLIRENPDAVREKLKKRGGD--ALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRA 62
Query: 375 VQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDY 413
++ + +L + ++ +K +EL DE E EL
Sbjct: 63 LKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 30.2 bits (68), Expect = 3.4
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 47 SSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDET- 105
S + PE +V +S SE+ VT VK K+ E+ E + + +E +E
Sbjct: 426 SKKEDLPEA---THVTSSVNSESLVTEVKTT---KSVEHKSESSSSDGSGHDDEEEEEPL 479
Query: 106 VKKNEVELKSKEE--VKSEVLKEVEKESKKEEKTVDKKEQEQK 146
+ ++ V S EE + E+ E+EKE +++E VD + QE++
Sbjct: 480 LSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEE 522
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 30.1 bits (68), Expect = 3.6
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 115 SKEEVKSEVLKEVEK---ESKKEEKTVDKKEQEQK--NDDKNMKNENKDAIKVEEKKNNE 169
K+EV ++KE EK E K++ + +D K Q + + E KD I E+K+ E
Sbjct: 503 PKDEV-ERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIE 561
Query: 170 GDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNND 220
+ K+ ++ + K+ E+ K L + K + +ND
Sbjct: 562 --NLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSSTSTTDPASND 610
>gnl|CDD|233137 TIGR00811, sit, silicon transporter. Marine diatoms such as
Cylindrotheca fusiformis encode at least six silicon
transport protein homologues which exhibit similar size
and topology. One characterized member of the family
(Sit1) functions in the energy-dependent uptake of
either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by
a Na+ symport mechanism. The system is found in marine
diatoms which make their "glass houses" out of silicon
[Transport and binding proteins, Other].
Length = 545
Score = 29.9 bits (67), Expect = 3.7
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 8 KREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKS 67
+RE++LKN +++ + N S E + NA E++E N +
Sbjct: 483 RRERMLKNIRELREMINNAISDEEKTTFE-AALAIEVKALDKLNAEEEEEATNKKEGKDT 541
Query: 68 ENE 70
E
Sbjct: 542 EAS 544
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 30.1 bits (68), Expect = 3.7
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 117 EEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAK 176
E E K +K +KK +K +E E++D + +N GD +
Sbjct: 6 VEESGE--KISKKAAKKAAAKAEKLRREATAKAAAASLEDED----DPLASNYGDVPL-- 57
Query: 177 IEVDQKSKESDKAKTDTEQKNKELKN 202
+ +SK + + TD +EL
Sbjct: 58 --EELQSKVTGREWTDVSDLGEELAG 81
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 3.9
Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 1/187 (0%)
Query: 21 AVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESEN 80
V + A ++ K+ T +T S + ++ + T K E +
Sbjct: 175 EVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKE 234
Query: 81 KTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDK 140
+ KE++ + + DE+ + ++ E+ + + E + EEK +K
Sbjct: 235 ASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEK 294
Query: 141 -KEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKE 199
K ++ +D++ E + + ++ + + ++ KE D ++
Sbjct: 295 RKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGR 354
Query: 200 LKNVKKT 206
+ +KK
Sbjct: 355 RRVMKKK 361
>gnl|CDD|224086 COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and
metabolism].
Length = 598
Score = 30.0 bits (68), Expect = 4.0
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 263 LQMFNDSQTPDEKFKIISQKYSELYHDF-----NILSLLSKQNEKQI-ALLQNEKEILTL 316
M + T DE+ + + QK E Y DF L + +E+ I +LL + E+
Sbjct: 73 ASMKLSTDTTDEEAQKLYQKLEEFYADFSSALSFFEPELLELDEEVIQSLLTSGPELADY 132
Query: 317 ENSKQELTREKLENLCRELQKQNKAIREENLQKFR 351
+EL R K L E +K +
Sbjct: 133 RFYLEELFRRKPHQLSAEEEKLLAQLSPVGNSASN 167
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 29.2 bits (66), Expect = 4.0
Identities = 18/94 (19%), Positives = 40/94 (42%)
Query: 73 NVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESK 132
++ + E K E ++ E+ + EV + KEE K + +VE
Sbjct: 87 QLEKQVEKKLKEEYGVKVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVI 146
Query: 133 KEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKK 166
+ + K+E+E+ + + +KN D + +++
Sbjct: 147 DTQTSKPKEEEEESEEAEKIKNFLADEYNIPKEQ 180
Score = 28.0 bits (63), Expect = 9.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 49 VTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKED-TVKIDTEVKKKEVDET-- 105
P+ + +S ENE+ + K E + E+ +++ +V+KK +E
Sbjct: 43 FGKDPDLEFYILSESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGV 102
Query: 106 -VKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEE 164
VK EVE+ E + +KEV K+E K K + E D ++ + EE
Sbjct: 103 KVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEEEEESEE 162
Query: 165 KKN 167
+
Sbjct: 163 AEK 165
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.9 bits (67), Expect = 4.1
Identities = 26/151 (17%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 104 ETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVE 163
+ E + +E + E E E+E ++EE+ +++ +E++ +D+ + E + E
Sbjct: 424 ASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Query: 164 E--KKNNEGDKSVAKIEVDQKSKESDKA---KTDTEQKNKELKNVKKTEPDQKNKEGLKN 218
E + ++EGD + E D + + S+ A + Q+ + ++ ++ + +
Sbjct: 484 EEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMD 543
Query: 219 NDKKQQQDKNKKQGKTSPPDTGASVNAVKTP 249
+ ++ + + SP + + V TP
Sbjct: 544 AESVGEESDEELLAEESPLSSHTELEGVATP 574
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 29.9 bits (68), Expect = 4.2
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 74 VKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNE------VELKSKEEVKSE---VL 124
+ V +++K ++ T+ + + E++ VK E + K + E K+E +
Sbjct: 478 LTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
Query: 125 KEVEKESKKEEKTVDKKEQEQKND-----DKNMKNENKDAIKVEEKKNNEGDKSVAKI 177
+EK K+E + + ++++ + + ++ E+K+ I E K E K V I
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEI---EAKTEELQKVVQPI 592
Score = 29.1 bits (66), Expect = 8.1
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 100 KEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDA 159
KE T+ + S +E+ E + + +E E+K K+ E KN+ + + +
Sbjct: 489 KEQKITITASSG--LSDDEI--ERMVKDAEEYAAEDKKR-KERIEAKNEAEEYVYSLEKS 543
Query: 160 IKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDT-EQKNKELKNV 203
+K E K E DK + ++ +E + + E K +EL+ V
Sbjct: 544 LKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKV 588
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.9 bits (68), Expect = 4.3
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 95 TEVKKKEVDETVKKNEVELKSKEE---VKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKN 151
T+ +K +DET ++ E+++ EE + K++ E + + K + +K K
Sbjct: 558 TDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKM 617
Query: 152 MKNENKDAIKVEEKK 166
K E + IK EK+
Sbjct: 618 SKKELEKLIKKLEKE 632
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 30.0 bits (68), Expect = 4.3
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 131 SKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAK 190
+KK ++T + +E+E++ D + K E++ + E D S+ E + K D
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL-- 280
Query: 191 TDTEQKNKELKN 202
D + KE K+
Sbjct: 281 -DKLEILKEKKD 291
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 29.5 bits (66), Expect = 4.4
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
Query: 70 EVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEK 129
+V + KV K S+ + E +E + + + + K +EEVK ++ +EK
Sbjct: 57 DVDDAKVLLGLKEKSTSEPTVPPEEAEPHAEE-EGQLAVRKTKQKVEEEVKEQLQSLLEK 115
Query: 130 -ESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEE-KKNNEGDKSVAKIEVDQKSKESD 187
K+E+ KE + D + ++ D + E K +E + +E S+
Sbjct: 116 IVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETA----SE 171
Query: 188 KAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGK 233
+ K D ++K E +N EP +K + D ++D +++
Sbjct: 172 QYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNP 217
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.8 bits (68), Expect = 4.5
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 278 IISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE--L 335
+ K E L + + EK + LL+ E ++L LE ++ +E++E RE L
Sbjct: 173 HLPLKLEEKQEILETLDVKERL-EKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYL 231
Query: 336 QKQNKAIREE---------NLQKFREEEEKRK 358
++Q KAI++E +++ RE+ EK K
Sbjct: 232 REQLKAIQKELGEDDDDKDEVEELREKIEKLK 263
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 29.5 bits (66), Expect = 4.6
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 328 LENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRG 387
L+ R+L +Q+ E L+ RE E+R+ S +L+ ++ NQ+ + +K +G
Sbjct: 73 LQTKIRKLTEQD-----EGLRNIRESIEERQKESDQLKLQNQKLVNQLGHARGVFIKTKG 127
Query: 388 D-------NLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDE 440
+ + ++ + L IQ D QE K E Q+ L + ++ E DE
Sbjct: 128 RYQKLEELSRHLKEENQCLQIQLDALVQEC---NEKIEENQELNRELAETLAYQQELNDE 184
Query: 441 FQQTLSRSNEIFAGFKSEMESMSSKINKLEKE 472
+Q T + + ++ + + +K+ L E
Sbjct: 185 YQATFVEQHNMLDKRQAYIGKLEAKVQDLMCE 216
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.7 bits (67), Expect = 4.8
Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 271 TPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLEN 330
P + + + + ++E + + + + L+ E + L + KQE E+LE
Sbjct: 255 VPLKAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEK 314
Query: 331 LCRELQKQNKAIREENLQKF--------REEEEKRKNVSVKLENTLSEISNQVQESNNKT 382
EL+++ + + NLQ + + + ++L+ + + N Q K
Sbjct: 315 AAEELRQKGELL-YANLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSEN-AQRYFKKY 372
Query: 383 MKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRK 429
KL+G AK + + ++ + LE + + + +
Sbjct: 373 KKLKG-----AKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEE 414
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 4.9
Identities = 99/488 (20%), Positives = 221/488 (45%), Gaps = 45/488 (9%)
Query: 70 EVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV--LKEV 127
E+ +K E E E + K E K +E++E +++ + E++ EE E+ LKE
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
Query: 128 EKE--------------SKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEE--KKNNEGD 171
+E ++ EK + + E+E ++ +K + ++EE KK E +
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
Query: 172 KSVAKIEVDQKSKESDKAKTDT-------------EQKNKELKNVKKTEPDQKNKEGLKN 218
K + ++E + E KAK + E+ KEL+ ++K ++ +E K
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEK-AKEEIEEEISKI 410
Query: 219 NDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKI 278
+ + K K+ K + + + + E + +++ + + + +++ K
Sbjct: 411 TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKE 470
Query: 279 ISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQK- 337
I +K +L + L + K+ + I L + +++ LE ++ E+LE E +K
Sbjct: 471 IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKL 530
Query: 338 QNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFR 397
+ K I+ + K ++E ++ +L+ L+E+ ++ E + +L + ++ +
Sbjct: 531 KEKLIKLKGEIKSLKKELEKLE---ELKKKLAELEKKLDELEEELAELLKELEELGFESV 587
Query: 398 ELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKS 457
E L +E+ +EL + +YLE++ E L ++ ++ + ++ L ++ E A +
Sbjct: 588 EEL---EERLKELEPFYNEYLELKDAEKELEREE----KELKKLEEELDKAFEELAETEK 640
Query: 458 EMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRT 517
+E + ++ +LEK+ + ++ +E+ E YLE+S E +EL ++ + K
Sbjct: 641 RLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEK 698
Query: 518 LQTERAEM 525
L+ E E
Sbjct: 699 LKEELEER 706
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.7 bits (67), Expect = 5.2
Identities = 71/417 (17%), Positives = 176/417 (42%), Gaps = 14/417 (3%)
Query: 112 ELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGD 171
+LKS EE ++ +++EK + E+ ++K + K ++ +K + ++E++ +
Sbjct: 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALE 382
Query: 172 KSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQ 231
+ E Q+ KE + ++ +E + E ++ +E + ++ ++ ++ Q
Sbjct: 383 RLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442
Query: 232 GKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFN 291
++ A + V +E P+ + + + + ++ S +
Sbjct: 443 LESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYE----LELEELEEELSREKEEAE 498
Query: 292 ILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFR 351
+ + + ++ L + E+L LE + +E EKLE L L++ + + LQ+
Sbjct: 499 LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQL- 557
Query: 352 EEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL 411
+EE ++ ++ L E ++ + +LR ++ KK +EL + + E+ L
Sbjct: 558 KEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQ 617
Query: 412 DYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAG---FKSEMESMSSKINK 468
LE+ + EN L + + ++ + A + ++E + ++I +
Sbjct: 618 S-----LELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672
Query: 469 LEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEM 525
+ +Q EK E ++ E + EL ++L + +L L++ +AE+
Sbjct: 673 ELQRIENEEQLEEKL-EELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.7 bits (67), Expect = 5.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 81 KTNENSKEDTVKIDTEVKKKEVDETVKK-NEVELKSKEEVKSEVLKEVEKESKKEE 135
K+ E K+ VK +E+ E V + E +++EEVK EV K+V+K + +
Sbjct: 450 KSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.5 bits (67), Expect = 5.5
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 269 SQTPDEKFKIISQKYS--ELYHDFNILSLLSKQ----NEKQIALLQNEKEILTLENSKQE 322
S DE FK +S+K LY +IL+ +Q N+ +I L E+ ++ +Q
Sbjct: 307 STENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYL-----EVALVKLCEQA 361
Query: 323 LT-----------REKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEI 371
+++E L +EL++ ++ +++EK+KN K + +I
Sbjct: 362 AASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKI 421
Query: 372 SNQVQESNNKT 382
++E+ +
Sbjct: 422 YKVLKEATRQD 432
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 29.5 bits (67), Expect = 5.6
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCREL-QKQNKAIRE 344
LS E I L + + + + ELTRE+ E L R L ++ +
Sbjct: 266 LSSSEEATITLPG----LGSGGDLEVELTREEFEELIRPLLERTIDLVER 311
>gnl|CDD|183173 PRK11519, PRK11519, tyrosine kinase; Provisional.
Length = 719
Score = 29.4 bits (66), Expect = 5.7
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 272 PDEKFKIISQKYSELYHDFNIL-SLLSKQNEKQIALLQNEKEILTLENSKQELTREKLEN 330
P +F + KYS L N+ +L +N K +L LT +E R+ L +
Sbjct: 196 PGTEFTV--TKYSTLGMINNLQNNLTVTENGKDTGVLS-----LTYTGEDREQIRDILNS 248
Query: 331 LCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDN 389
+ R +QN R+ EE K+++ L L E+ +++ + NK R D
Sbjct: 249 ITRNYLEQNIE---------RKSEEASKSLAF-LAQQLPEVRSRLDVAENKLNAFRQDK 297
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 29.1 bits (65), Expect = 6.0
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 440 EFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAES 499
EF Q R + G + + + + + ++R K L NE KA
Sbjct: 242 EFFQNKRRQKKTSGGLLNSISNKGKYLEIYTELNEENRKRILKLLHEDLNEVNELNKAPR 301
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.3 bits (66), Expect = 6.1
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 298 KQNEKQIALLQNEKEILTLENSKQELTREK--LENLCRELQKQNKAIREENLQKFREEEE 355
E++ L Q E+ + +EL + L+N + RE
Sbjct: 204 LLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263
Query: 356 KRK 358
R
Sbjct: 264 ARA 266
Score = 28.9 bits (65), Expect = 8.5
Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 18/192 (9%)
Query: 306 LLQNEKEILTLENS--KQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSV- 362
L Q +KEI LE +Q+ R KLE + L+ + ++ + ++ + ++ RK ++
Sbjct: 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99
Query: 363 -----KLEN-------TLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQEL 410
LE L+E +Q S + + A++ L I Y
Sbjct: 100 NARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPAR 159
Query: 411 LDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470
+ K +R +I+ + E LS A +E + +L
Sbjct: 160 AERIDALKATLKQLAAVRAEIA---AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216
Query: 471 KETATWKQRWEK 482
E + +++ E+
Sbjct: 217 SELSADQKKLEE 228
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 29.0 bits (66), Expect = 6.4
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 26/97 (26%)
Query: 281 QKYSELYH--DFNILSLLSKQ------NEKQI--ALLQNEKEILTLENSKQELTREKLEN 330
+K+S F+I L++Q NE+ + AL + L L + T E L
Sbjct: 154 EKFSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRE-----LGLPEDPSKWTDEDLLE 208
Query: 331 LCRELQKQNKAI-----------REENLQKFREEEEK 356
L REL+K +K + EEN+++ +EE+
Sbjct: 209 LARELRKISKPMVIAANKADLPPAEENIERLKEEKYY 245
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.1 bits (65), Expect = 6.5
Identities = 30/202 (14%), Positives = 75/202 (37%), Gaps = 17/202 (8%)
Query: 50 TNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKN 109
+ A PK+E+ E E + + +E KK+ E K+
Sbjct: 83 GGSKGPAAKTKPAKEPKNES-----GKEEEKEKEQVKEE----------KKKKKEKPKEE 127
Query: 110 EVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNE 169
+ K KEE K + + +++ K+++ + +E+K ++ ++ N +
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Query: 170 GDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNK 229
+ + + Q ++E+ K K + N+E + + D++ + + +Q
Sbjct: 188 KEPP-EEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTS-PMEEDESRQSSEI 245
Query: 230 KQGKTSPPDTGASVNAVKTPAV 251
+ +S ++ +P
Sbjct: 246 SRRSSSSLKKPDPSPSMASPET 267
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 28.3 bits (64), Expect = 7.1
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 86 SKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKK 141
S K++ K++ + KK E E +++ K V +E K+++K VD
Sbjct: 69 SGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKK----YVVSEERKEDQKAVDAA 120
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 29.2 bits (66), Expect = 7.1
Identities = 70/354 (19%), Positives = 143/354 (40%), Gaps = 29/354 (8%)
Query: 98 KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDK-KEQEQKNDDKNMKNEN 156
+ E++ +++ + ELK EE ++ E+EK+ ++ EK +K ++ K K +
Sbjct: 89 ENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNL 148
Query: 157 KDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGL 216
+A+K K N +K + +++ + S + + + K K L + K E
Sbjct: 149 SEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTL--S 206
Query: 217 KNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVS------IKEHPKTDVMLQMFNDSQ 270
+ + +Q + ++ D S + S ++ H + D F
Sbjct: 207 VIDFDEIEQAEILEKSIIGSSDVPIS-ELINNLGNSDWVKEGLEYHEEGDTCP--FCQQT 263
Query: 271 TPDEKFKIISQKYSELYHDF-NILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLE 329
+E+ + + E Y + L L + E I E E + + + +E
Sbjct: 264 ITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVE 323
Query: 330 NLCRELQKQNKAIREENLQKFREEEEKRKNVS--VKLENTLSEIS---------NQVQES 378
L L+ + + E+NLQK EEK K+ S ++LE+ I N++
Sbjct: 324 ELKALLEALEEIL-EKNLQKL---EEKLKDPSTSIELESITDLIESINDIIDAINELIRE 379
Query: 379 NNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQIS 432
+N+ + + AKK L + + K +++ Y+ + ++K N L K+I
Sbjct: 380 HNEKIDNLKKEKNKAKKKLWLHLVAELK-EDIDAYQKEKKGLEKAINSLEKEIK 432
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 29.1 bits (65), Expect = 7.1
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 91 VKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDK 150
K KK + + + K K + S E K KN +K
Sbjct: 2 GKASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKN--RNSHTENKMESGTNDNNKNKEK 59
Query: 151 NMKNEN-KDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKEL 200
K + D+ EE++ +G +S++K+ V+ K ++ T +K +L
Sbjct: 60 LSKLYSDVDSSSSEEEE--DGSESISKLNVNSKKISLNQVSTQKWRKELDL 108
>gnl|CDD|182409 PRK10361, PRK10361, DNA recombination protein RmuC; Provisional.
Length = 475
Score = 29.2 bits (65), Expect = 7.6
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 322 ELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK 381
E R+ L +L L++Q R + F +E ++R ++ ++ N + QE+ N
Sbjct: 132 EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINL 191
Query: 382 TMKLRGDN 389
T L+GDN
Sbjct: 192 TRALKGDN 199
>gnl|CDD|219971 pfam08690, GET2, GET complex subunit GET2. This family
corresponds to the GET complex subunit GET2. The GET
complex is involved in the retrieval of ER resident
proteins from the Golgi.
Length = 298
Score = 28.6 bits (64), Expect = 8.5
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 16 KLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEV 71
KL K+V + K +T+ + + PE +++ + PK E+E
Sbjct: 39 KLVSKSVLDAKPE----------DNTGSTTSAHDQSTPEIQDILEAIDPPKDESES 84
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 28.7 bits (64), Expect = 8.5
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 116 KEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVA 175
K+ +E K K KKE + + + N + + A + + K
Sbjct: 333 KKTRTAE--KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 176 KIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQ 210
+ S+ ++ E + +
Sbjct: 391 IDASPNEDTPSENEESKGSPPQVEATTTAEPNREP 425
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 28.8 bits (64), Expect = 8.5
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 78 SENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKT 137
++ N +D K+ VK ++ K+ E+E KE ++ E KE+++ + K
Sbjct: 365 TDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDL 424
Query: 138 VDKKEQEQKNDDKNM 152
K E + D N+
Sbjct: 425 AVKSLSEGGSTDINI 439
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 28.8 bits (64), Expect = 9.3
Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 29/263 (11%)
Query: 274 EKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCR 333
E+ K + + N L +++ E Q +L+ E++I TL KQE R
Sbjct: 192 EQHKEAQSSSESMSAERNALL--AQRAENQQRILELEQDIQTLTQKKQENDR-------- 241
Query: 334 ELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRG--DNLD 391
+ + + I E + E +++ K ++++ + +E + E+ LR + L+
Sbjct: 242 -VLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLE 300
Query: 392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENG-LRKQISMYGEKYDEFQQTLSRSNE 450
+++ LL + L D+ L + E+ + Q+S E Q ++ E
Sbjct: 301 SSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERE 360
Query: 451 IFAGFKSEMESMSSKINKLEKETATWKQRWEKS--------HEAYLEMSNEKTKAESELI 502
+ E+ +I KL E + E+ + +E+ EK +L
Sbjct: 361 ---TLRQSAEADKDRIQKLSAE----LLKLEEWLQEERSQREKLEVELGIEKDCNRVQLS 413
Query: 503 TTCRQLAALLKLCRTLQTERAEM 525
R+L+ L R LQ E+ ++
Sbjct: 414 ENRRELSELRSALRVLQKEKEQL 436
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.1 bits (63), Expect = 9.6
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 98 KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDD-KNMKNEN 156
KKKE+ E ++K + E + K++ K + K +K+ K ++K DKK+ + + D K +++
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Query: 157 KDAIKVEEKKN 167
+D K +
Sbjct: 123 EDLTKSYSETL 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.300 0.119 0.304
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,901,417
Number of extensions: 2475652
Number of successful extensions: 7629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5235
Number of HSP's successfully gapped: 1378
Length of query: 565
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 463
Effective length of database: 6,413,494
Effective search space: 2969447722
Effective search space used: 2969447722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (27.8 bits)