RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy825
(565 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 1e-13
Identities = 84/536 (15%), Positives = 169/536 (31%), Gaps = 119/536 (22%)
Query: 76 VESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEE 135
++ E ++ +D + + + D +V+ K + E + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 136 KT---VDKKEQEQKN------DDKNMKNEN--KDAIKVEEKKNNEGDKSVAKIEVDQKSK 184
T +Q+ ++ N IK E++ S + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPS---MMTRMYIE 114
Query: 185 ESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKN------KKQGKTSPPD 238
+ D+ D + K NV + +P K ++ L + + KN GKT
Sbjct: 115 QRDRLYNDNQVFAK--YNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTW--- 165
Query: 239 TGASVNAVKTPAV-----------SIKEHPKTDVMLQMFND-SQTPDEKFKIISQKYSEL 286
+++ + V ++K + +L+M D + S S +
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 287 YHDFNI----LSLLSKQNEKQIALL-----QNEKEILTLENSKQEL--TREKLENLCREL 335
+ L L K + LL QN K S + L TR K + L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFL 281
Query: 336 QKQN-KAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAK 394
I ++ +E + + L+ ++ +V +N + + + +A+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAE 335
Query: 395 KFRELLIQYDEKEQELLDYKAKYLEM---QKTENGLRKQISMYGEKYDEF---------- 441
R+ L +D + D +E RK +D
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIP 388
Query: 442 QQTLSR--SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS-----HEAYLEMSNEK 494
LS + I KS++ + +NKL K + ++ K YLE+ K
Sbjct: 389 TILLSLIWFDVI----KSDVMVV---VNKLHKYSLV--EKQPKESTISIPSIYLEL---K 436
Query: 495 TKAESELITTCRQL-AALLKLCRTLQTERAEMLAKLNGAGGYSYLILSY-MKKFDR 548
K E+E L +++ +T ++ L Y Y + + +K +
Sbjct: 437 VKLENE-----YALHRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEH 486
Score = 55.2 bits (132), Expect = 4e-08
Identities = 49/343 (14%), Positives = 111/343 (32%), Gaps = 80/343 (23%)
Query: 251 VSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNE 310
++ D+ L +F D+ + K + D S+LSK+ I + ++
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDCKDVQ--------DM-PKSILSKEEIDHIIMSKDA 60
Query: 311 KE-----ILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLE 365
TL + ++E+ ++ +E + L+ K + + E+ + ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEV---LRINYKFLMS----PIKTEQRQPSMMTRMYI 113
Query: 366 NTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTEN 425
+ N Q N+ + + +L ++ L LE++ +N
Sbjct: 114 EQRDRLYNDNQ-------VFAKYNVSRLQPYLKL--------RQAL------LELRPAKN 152
Query: 426 -------GLRKQISMYGEKYDEFQQTLSRSNEIF---AGFKSEMESMSSKINKL-EKETA 474
G K + + ++ +IF + E++ + KL +
Sbjct: 153 VLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 475 TWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKL---------------CRTLQ 519
W R + S L + + + + L+ + LL L C+ L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 520 TERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGLMEPKSK 562
T R + + A +++ L + L + K
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSM---------TLTPDEVK 304
Score = 40.6 bits (94), Expect = 0.002
Identities = 57/388 (14%), Positives = 116/388 (29%), Gaps = 101/388 (26%)
Query: 3 KKYLKK--REKILKNKL----DVKAVSNEKA---SCSESNEKDKKTPETTTSESSVTNA- 52
+ L++ + K +N L +V+ A SC K TT VT+
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------KIL-LTTRFKQVTDFL 281
Query: 53 -------------------PEKKEL-ANVANSPKSE--NEVTNV----------KVESEN 80
E K L + + EV +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 81 KTNENSKEDTVKIDTEVKKKEVDETVKK-NEVELKS--------KEEVK--SEVLKEVEK 129
T +N K ++ + ++ ++ E + + +L +
Sbjct: 342 ATWDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 130 ESKKEEKTVDKKEQEQKND-DKNMKNENK--DAIKVEEKKNNEGDKSVAKIEVDQKSKES 186
+ K + V + + + +K K +I +E K E + ++ + VD +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP- 456
Query: 187 DKAKTDTEQKNKE-----------LKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTS 235
+D LKN++ E + + +Q+ ++ +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 236 PPDTGASVNAVKTPAVSI-KEHPKTDVMLQMFND-SQTPDEKFKIISQKYSELYHDFNIL 293
++ +K I PK + ++ D +E +I KY+ ++L
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYT------DLL 568
Query: 294 SLLSKQNEKQIALLQNEKEILTLENSKQ 321
+IA L E E + E KQ
Sbjct: 569 ---------RIA-LMAEDEAIFEEAHKQ 586
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 59.8 bits (145), Expect = 2e-09
Identities = 41/261 (15%), Positives = 101/261 (38%), Gaps = 9/261 (3%)
Query: 274 EKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCR 333
EK + ++ Y+E L+ ++ E+ + ++ E + + + ++K++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 334 ELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMA 393
+L++Q + EE + + + EK K++ +I ++ NNK K R +
Sbjct: 959 DLEEQ---LEEEEAARQKLQLEKVTADG-KIKKMEDDILIM-EDQNNKLTKERKLLEERV 1013
Query: 394 KKFRELLIQYDEKEQELLDYKAKYL----EMQKTENGLRKQISMYGEKYDEFQQTLSRSN 449
L + +EK + L K K+ E++ K + + + S +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073
Query: 450 EIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLA 509
E A ++++ + +++ K E+E R E + + ES + L
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Query: 510 ALLKLCRTLQTERAEMLAKLN 530
+ + ++ ++ +L
Sbjct: 1134 SEKAARNKAEKQKRDLSEELE 1154
Score = 59.5 bits (144), Expect = 2e-09
Identities = 40/218 (18%), Positives = 94/218 (43%), Gaps = 9/218 (4%)
Query: 292 ILSLLSKQNEKQIALLQNEKEILTLENSKQELTRE--KLENLCRELQKQNKAIREEN--- 346
+L L + E++ A + + E +T + +++ + +E+ +L K+ K + E
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016
Query: 347 LQKFREEEEKRKNVS---VKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQY 403
EEEEK KN++ K E+ +SE+ ++++ +L + + +L Q
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 404 DEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463
E + ++ + KA+ + ++ ++ + + + + + + ++ES
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 464 SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESEL 501
+ NK EK+ + E LE + + T + EL
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTE-LEDTLDTTATQQEL 1173
Score = 55.2 bits (133), Expect = 5e-08
Identities = 50/321 (15%), Positives = 107/321 (33%), Gaps = 9/321 (2%)
Query: 54 EKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVEL 113
KE A + E E + ++ E + + ++ E ++ V KK E+E
Sbjct: 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927
Query: 114 KSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKS 173
E +E + + EK KK Q+Q D + E + A + + + D
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEK---KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 174 VAKIEVDQKSKESDKAKTDTEQKNKELKN----VKKTEPDQKNKEGLKNNDKKQQQDKNK 229
+ K+E D E K E+K E + E ++K K K +K +
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 230 KQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHD 289
+ + + +K + ++ + ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA-ELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 290 FNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQK 349
+ K+I L++ L + ++ R K E R+L ++ +A++ E L+
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE-LED 1162
Query: 350 FREEEEKRKNVSVKLENTLSE 370
+ ++ + +
Sbjct: 1163 TLDTTATQQELRGSDYKDDDD 1183
Score = 54.1 bits (130), Expect = 1e-07
Identities = 36/250 (14%), Positives = 101/250 (40%), Gaps = 1/250 (0%)
Query: 281 QKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNK 340
K + + ++ +++ + E + L ++++ + L+ + + +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA-ETELY 908
Query: 341 AIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELL 400
A EE + ++++ + + ++E + E + Q+ + K++ LD+ ++ E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 401 IQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEME 460
+ + E + K +M+ + Q + ++ ++ +S A + + +
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 461 SMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQT 520
+++ NK E + + R +K ++ E+ K K E E Q+A L L+
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 521 ERAEMLAKLN 530
+ A+ +L
Sbjct: 1089 QLAKKEEELQ 1098
Score = 42.9 bits (101), Expect = 3e-04
Identities = 32/229 (13%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 3 KKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEK-KELANV 61
+ ++ R K +L+ E E + E + + + E+ +E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 62 ANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKS 121
+ E + K++ ++ K+ E +K ++E V L +EE
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE--RKLLEERVSDLTTNLAEEEEKAK 1028
Query: 122 EVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQ 181
+ K K + + ++E+K+ + K K+ EG+ S ++ +
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEK----------IKRKLEGESSDLHEQIAE 1078
Query: 182 KSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKK 230
+ + K +K +EL+ D+ +++ ++ +
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Score = 32.5 bits (74), Expect = 0.41
Identities = 35/242 (14%), Positives = 87/242 (35%), Gaps = 24/242 (9%)
Query: 3 KKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAP-----EKKE 57
KK ++++ L+ +L+ + + +K E D K + + + E+K
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQ-LEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 58 LANVANSPKSENEVTNVKVESENKTNEN------------SKEDTVKIDTEVKKKEVDET 105
L + + K ++ K KE+ + + E K++++
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 106 VKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEK 165
++ + +E LK + ++E + + +++ + N + ++
Sbjct: 1069 SSDLHEQIAELQAQIAE-LKAQLAKKEEELQAALARLEDETSQKNNALKKIREL--ESHI 1125
Query: 166 KNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQ 225
+ + D K ++ K+ + E EL++ T Q+ L+ +D K
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE---LRGSDYKDDD 1182
Query: 226 DK 227
DK
Sbjct: 1183 DK 1184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 3e-08
Identities = 47/310 (15%), Positives = 97/310 (31%), Gaps = 86/310 (27%)
Query: 278 IISQKYSELYHDFNI----LSLLSKQNEKQIALLQNEKEILTLEN---SKQELTREKLEN 330
+S + L H + + S+ E+ +L E ++ + EL + L
Sbjct: 10 TLS--HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 331 LCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN---KTMKLRG 387
+ ++ ++ V L L+E N E N+ KL
Sbjct: 68 VSSLVEPSKVGQFDQ----------------V-LNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 388 DNLDMAKKFRELLIQYDEKEQELLDYKAKYL----EMQKTENGL-----RKQISMY---- 434
+N K +EL+ Y A+ + +K+ + L +
Sbjct: 111 ENDTTLVKTKELIKNY---------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 435 G----EKY-DEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWK---------QRW 480
G + Y +E + + + ++ + +++L + T + W
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 481 ----EKSH-EAYLEMSNEKTKAESE----LITTCRQLAALLKLCRTLQTERAEMLAKLNG 531
+ + YL LI QLA + + L E+ + L G
Sbjct: 219 LENPSNTPDKDYL--------LSIPISCPLIGVI-QLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 532 AGGYSYLILS 541
A G+S +++
Sbjct: 270 ATGHSQGLVT 279
Score = 39.6 bits (92), Expect = 0.003
Identities = 42/234 (17%), Positives = 70/234 (29%), Gaps = 83/234 (35%)
Query: 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQV----QES 378
LT+E+++ + + N K V + L N N V +S
Sbjct: 344 LTQEQVQ----------DYVNKTNSHLPAG-----KQVEISLVNGA---KNLVVSGPPQS 385
Query: 379 NNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRK-QISMYGEK 437
L G NL + K +Q + + E RK + S
Sbjct: 386 ------LYGLNLTLRKAKAP-----SGLDQ----SRIPFSE--------RKLKFSN---- 418
Query: 438 YDEFQQTLSRSNEIFAGFKSE-MESMSSKINK-LEKETATWKQRWEKSHEAYLEMSNEKT 495
F L + + F S + S INK L K ++ +++ T
Sbjct: 419 --RF---L----PVASPFHSHLLVPASDLINKDLVKNNVSFNA-------KDIQIPVYDT 462
Query: 496 KAESELITTCRQLAALL--KLCRTLQTERA--EMLAKLN-------GAGGYSYL 538
S+L R L+ + ++ + E + G GG S L
Sbjct: 463 FDGSDL----RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 50.5 bits (121), Expect = 1e-06
Identities = 22/202 (10%), Positives = 71/202 (35%), Gaps = 6/202 (2%)
Query: 305 ALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRK--NVSV 362
++ + + + + + +++ K ++ E R ++ N +
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 363 KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422
+L+ + E + + + K L +K R + + E+E + + L +Q+
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 423 TENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMES----MSSKINKLEKETATWKQ 478
LRK++ + ++ + SE++ + ++ +L + +
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Query: 479 RWEKSHEAYLEMSNEKTKAESE 500
++ E L ++ + +
Sbjct: 1052 EITETMEKKLVEETKQLELDLN 1073
Score = 49.0 bits (117), Expect = 4e-06
Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 11/231 (4%)
Query: 3 KKYLKKREKILKNKLDVKAVSNEKA--SCSESNEKDKKTPETTTSESSVTNAPEKKELAN 60
+ R K + K++ +K + + K+EL
Sbjct: 849 LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908
Query: 61 VANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVK 120
+ +S + + ENK + KID + K+ + K N +E+ E +
Sbjct: 909 LKIEARSVERYKKLHIGLENK----IMQLQRKIDEQNKEYK-SLLEKMNNLEITYSTETE 963
Query: 121 SEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNN-EGDKSVAKIEV 179
L+ + + E+ + + + K+ + + +K E K E
Sbjct: 964 K--LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021
Query: 180 DQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKK 230
+Q E + T + + +EL + + ++ E ++ ++ +
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNR-RIHDQAKEITETMEKKLVEETKQLELD 1071
Score = 45.9 bits (109), Expect = 3e-05
Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEE 355
L E +I LQ + + E LE ++ ++ E L+ EE +
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS-DVERLRMSEEEAK 980
Query: 356 KRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKA 415
N + L+ ++++ ++ ++ + + + +L+ + E+ L K
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL---KT 1037
Query: 416 KYLEMQKTENGLRKQIS 432
+ E+ + + K+I+
Sbjct: 1038 EKEELNRRIHDQAKEIT 1054
Score = 45.1 bits (107), Expect = 5e-05
Identities = 30/210 (14%), Positives = 75/210 (35%), Gaps = 21/210 (10%)
Query: 294 SLLSKQNEKQIALLQNEKEILTLENSKQELTRE---KLENLCRELQKQNKAIREENLQKF 350
+++ Q + + + E + L +E E ++ LEN +LQ++ +E
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY---- 944
Query: 351 REEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQEL 410
+ EK LE T S + +++ + + + + L + + +EL
Sbjct: 945 KSLLEKMN----NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 411 LDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470
+ + +++ + + + + E L K+E E ++ +I+
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL----------KTEKEELNRRIHDQA 1050
Query: 471 KETATWKQRWEKSHEAYLEMSNEKTKAESE 500
KE ++ LE+ + +
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 43.2 bits (102), Expect = 2e-04
Identities = 29/230 (12%), Positives = 83/230 (36%), Gaps = 12/230 (5%)
Query: 308 QNEKEILTLENSKQELTREKL-ENLCRELQKQNKAIREE---NLQKFREEEEKRKNVSVK 363
+ + + + Q L R L N + + +++K+I + R + V
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 364 LENTLSEISNQVQESNNK-----TMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYL 418
L+ + + + K + + ++ + K +L + DE+ +E K
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 419 EMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQ 478
++ T + +++ E+ ++ + + E+ + ++++ + E T ++
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 479 RWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAK 528
+K ++ +E + + L + L + E E + K
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLK---TEKEELNRRIHDQAKEITETMEK 1059
Score = 40.5 bits (95), Expect = 0.001
Identities = 35/252 (13%), Positives = 84/252 (33%), Gaps = 60/252 (23%)
Query: 107 KKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKK 166
K V L+ + + K K+ K E ++V++ ++ +N + + I + K+
Sbjct: 887 LKAIVYLQC--CYRRMMAKRELKKLKIEARSVER-YKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 167 NNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQD 226
+ + +E S E++K ++D E+ + K + + +K+
Sbjct: 944 YKSLLEKMNNLE-ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 227 KNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSEL 286
++ K I + +
Sbjct: 1003 TQTEK---------------------------------------------KTIEEWADKY 1017
Query: 287 YHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREEN 346
H+ L + ++Q LL+ EKE L + +E E + ++L ++ K + +
Sbjct: 1018 KHE---TEQLVSELKEQNTLLKTEKE--ELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072
Query: 347 LQKFREEEEKRK 358
+E+ +
Sbjct: 1073 ------NDERLR 1078
Score = 39.3 bits (92), Expect = 0.004
Identities = 23/161 (14%), Positives = 60/161 (37%), Gaps = 3/161 (1%)
Query: 73 NVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESK 132
+V+ + + V + ++ +KK ++E +S E K + E+K
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL---HIGLENK 929
Query: 133 KEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTD 192
+ EQ ++ K N + E + D ++ ++ +++ +
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 193 TEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGK 233
E+ K K + +T+ ++K E + K + + + +
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Score = 34.7 bits (80), Expect = 0.084
Identities = 20/130 (15%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 104 ETVKKNEVELKSK-EEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKV 162
E KK + L++K +++ ++ ++ ++ EK + + + + + +++
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM--NNLEITYSTETEKLRSDVERLRM 974
Query: 163 EEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVK-KTEPDQKNKEGLKNNDK 221
E++ V ++ + + +T TE+K E K K E +Q E + N
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 222 KQQQDKNKKQ 231
+ + + +
Sbjct: 1035 LKTEKEELNR 1044
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/128 (10%), Positives = 44/128 (34%), Gaps = 5/128 (3%)
Query: 291 NILSLLSKQNEKQIALLQNEKEILTLENSKQELTR--EKLENLCRELQKQNKAIREENLQ 348
+++L ++ + + L+N ++ E ++ + L+ + + Q
Sbjct: 882 KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQ 941
Query: 349 KFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQ 408
+ ++ N + E++ + + A+ ++ L+ E+ Q
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGV---KSSAETYKNTLLAELERLQ 998
Query: 409 ELLDYKAK 416
++ D
Sbjct: 999 KIEDLHHH 1006
Score = 37.7 bits (88), Expect = 0.011
Identities = 17/187 (9%), Positives = 48/187 (25%), Gaps = 7/187 (3%)
Query: 4 KYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVAN 63
+ + + + + + E E + E K +A
Sbjct: 827 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAV 886
Query: 64 SPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV 123
+ N + K+E+ T D+ + + ++ + E +S E +
Sbjct: 887 LLQKYNRI-LKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD 945
Query: 124 LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKS 183
L + + + + E+K+ + + ++ +
Sbjct: 946 LLSILAQLTELNYNGVPELTERKDTFFAQQ------WTGVKSSAETYKNTLLAELERLQK 999
Query: 184 KESDKAK 190
E
Sbjct: 1000 IEDLHHH 1006
Score = 35.0 bits (81), Expect = 0.079
Identities = 18/168 (10%), Positives = 58/168 (34%), Gaps = 10/168 (5%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
+ +E+ ++ L +++ + + + ++ + + K +KLEN
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902
Query: 333 RELQKQNKAIREEN----LQKFREEEE----KRKNVSVKLENTLSEISNQVQESNNKTMK 384
+ + +Q + E + +++ + + L I Q+ E N +
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP 962
Query: 385 LRGDNLD--MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQ 430
+ D A+++ + + + LL + +++ +
Sbjct: 963 ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 38.4 bits (89), Expect = 0.007
Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 8/167 (4%)
Query: 56 KELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKS 115
++ + K + + ++ E + +I+ + + E ++N+ + +
Sbjct: 851 NDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEM 910
Query: 116 KEEVKSEVLKEVEKESKKE--EKTVDKKEQEQKNDDKNMKNENKDAIKVEEKK------N 167
EEVK + + +K+ + + + D ++ + + E+++
Sbjct: 911 IEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIK 970
Query: 168 NEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKE 214
E A + S + + A + + N+ L + P K K+
Sbjct: 971 EENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKK 1017
Score = 34.1 bits (78), Expect = 0.14
Identities = 30/230 (13%), Positives = 78/230 (33%), Gaps = 27/230 (11%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
+ K ++ + Y+E F + + + + E+ + + E ++ L
Sbjct: 723 NTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDPTSIESEKEKKDFVKLF 782
Query: 333 RELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDM 392
E + E LQ + E + + L + ++ K + ++
Sbjct: 783 GEYLRA-----ENILQNYDEFATLKALQQIDLSDPVAVE------------KFKAEHYVD 825
Query: 393 AKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYD----EFQQTLSRS 448
+KF EL ++++ DY++ Y +++ + ++ D F+ L +S
Sbjct: 826 DEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKS 885
Query: 449 NEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAE 498
EI ++ + I + ++ + E+ + K
Sbjct: 886 QEI------NLDYILGLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEG 929
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.016
Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 96 EVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNE 155
E ++K + E + ++E + + K++E+ ++++ + V+K + + DK +
Sbjct: 92 EEQRKRLQE---LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Query: 156 NKDAI 160
I
Sbjct: 149 PDADI 153
Score = 29.0 bits (64), Expect = 3.0
Identities = 9/57 (15%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 178 EVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKT 234
+ D+ ++E + + E++ K L+ + + ++ + KK ++ N++Q +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQ--ELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 29.0 bits (64), Expect = 3.2
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 101 EVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAI 160
+ D ++ E K +EE + L+E++ SK E+ +K ++ + ++E +
Sbjct: 76 QADRLTQEPESIRKWREEQRKR-LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 161 KVEEKKNNE 169
K+ + ++
Sbjct: 135 KINNRIADK 143
Score = 27.8 bits (61), Expect = 6.8
Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 319 SKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQES 378
++ + ++ E++ + ++Q K ++E + K + E ++ Q
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQE------LDAASKVMEQEWR-EKAKKDLEEWNQRQ 127
Query: 379 NNKTMKLRGDNLDMAKKFRE 398
+ + K + +N K F +
Sbjct: 128 SEQVEKNKINNRIADKAFYQ 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 35.8 bits (82), Expect = 0.033
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 293 LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFRE 352
L K + + L++ + ++ ++N + QKQ K + E
Sbjct: 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTE 150
Query: 353 EEEKRK----NVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRE 398
E N+ + ++L + + + K KL R
Sbjct: 151 MELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCRS 200
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.8 bits (83), Expect = 0.033
Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 8/175 (4%)
Query: 307 LQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEE--KRKNVSVKL 364
K N EL R N + K + ++ F E E + +
Sbjct: 91 SAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVF 150
Query: 365 ENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTE 424
+ + +I+ Q ++ + ++ K++ EL + ++ + + +
Sbjct: 151 QGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGEL 210
Query: 425 NGLRKQISMYG------EKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKET 473
+ +YDE + N K+E + + ++ K++K+
Sbjct: 211 KTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKR 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 35.6 bits (81), Expect = 0.053
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 114 KSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKS 173
++ + +V V + + + K ++E+ +++ K E+++ K E
Sbjct: 801 EASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIK-- 858
Query: 174 VAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQ 210
+ K + + K K ++ N+ + P Q
Sbjct: 859 ------ETKENDEEFYKNKYSSKPYKVDNMTRILPQQ 889
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 33.9 bits (78), Expect = 0.17
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 92 KIDTEV---KKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKND 148
K+ + + + K E + V KE +E V + +
Sbjct: 547 KVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIK 606
Query: 149 DKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDK 188
K K + +K ++ D V KI + +DK
Sbjct: 607 LKEKKEGKEMYVKFDDFAKL--DLRVGKIIEVKDHPNADK 644
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.4 bits (76), Expect = 0.19
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 116 KEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVA 175
+ L +EE E+ K + K + E++ + E SV
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 176 KIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQD 226
++ + + + D + ++ + T +K K+ K K Q D
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK--KKRGPKVQTD 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.26
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 221 KKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIK 254
+KQ K + K D+ PA++IK
Sbjct: 18 EKQALKKLQASLKLYADDSA--------PALAIK 43
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 33.0 bits (75), Expect = 0.28
Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 128 EKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKV-------EEKKNNEGDKSVAKIEVD 180
+K +++ +++ K++ +Q ++ ++ + +V EK + + + + D
Sbjct: 11 QKSFEQKIESLKKEKDDQLSEGNQKEHFRQGQAEVIAYYPLQGEKVISSVRELINQDVKD 70
Query: 181 QKSKESDKAKTDTEQKNKELKNV-----KKTEPDQKNKEGLKNNDKKQQQDKNKKQGKT 234
+ + + TEQ+ LK V K D + + + + G+
Sbjct: 71 KLESKDNLVFYYTEQEESGLKGVVNRNVTKQIYDLVAFKIEETEKTSLGKVHLTEDGQP 129
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.8 bits (75), Expect = 0.29
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKE----ILTLENSKQELTREKL 328
D +++ + L N+ S K I +KE ++ +
Sbjct: 40 DSEWRRCRFRADNLNKLKNLCS-------KTIGEKMKKKEPVGDDESVPENVLSFDDLTA 92
Query: 329 ENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQES 378
+ L Q K +R + + + +R + + L EI N + S
Sbjct: 93 DALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPS 142
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 32.8 bits (73), Expect = 0.33
Identities = 16/182 (8%), Positives = 66/182 (36%), Gaps = 6/182 (3%)
Query: 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEE 355
L++ + L++ + T+E + E E + + ++ ++ +K + ++
Sbjct: 59 LTEWARRWRQLVEKGPQYGTVEKAWMAFMSE-AERVSELHLEVKASLMNDDFEKIKNWQK 117
Query: 356 KRKNVSV-----KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQEL 410
+ + + + + + K ++ +E + +
Sbjct: 118 EAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSK 177
Query: 411 LDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLE 470
D +++K ++ + K + ++++++L ++ + ME + + + E
Sbjct: 178 ADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFE 237
Query: 471 KE 472
++
Sbjct: 238 EK 239
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 32.6 bits (74), Expect = 0.34
Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 311 KEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSE 370
+ L+ +K + + LE++ +++ + ++ Q + + N +
Sbjct: 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVK----QLIKAIQLTYNPDESSKPNMIDA 81
Query: 371 ISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQK 422
+ + ++ + MK L R L Y+ Q++++ K K +++
Sbjct: 82 ATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 32.3 bits (74), Expect = 0.45
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 32/182 (17%)
Query: 22 VSNEKASCSESNEKDKKTPE----TTTSESSVTNAPEKKELANVANSPKSENEVTNVKVE 77
+ D KT + T + + +A + EL N +++++ +
Sbjct: 492 IEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETED 551
Query: 78 SENK------TNENSKEDTV--KIDTEVKKK---EVDETVK--KNEVELKSKEEVKSEVL 124
+N T E+ K K +++ + +E K +
Sbjct: 552 RKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYI-AKY 610
Query: 125 KEVEK--------------ESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEG 170
+E+ E K+ ++ + Q +K +A K EEKK+ EG
Sbjct: 611 EELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEG 670
Query: 171 DK 172
D
Sbjct: 671 DV 672
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.7 bits (71), Expect = 0.87
Identities = 18/136 (13%), Positives = 42/136 (30%)
Query: 298 KQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKR 357
+ E+Q L Q+E E E + E +E+ + ++ + +
Sbjct: 686 GRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK 745
Query: 358 KNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKY 417
T +E+ + + + R K ++L +K +E+ +
Sbjct: 746 LKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG 805
Query: 418 LEMQKTENGLRKQISM 433
G Q+ +
Sbjct: 806 TIRDLAVAGPEMQVKL 821
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 31.2 bits (71), Expect = 1.1
Identities = 21/186 (11%), Positives = 56/186 (30%), Gaps = 11/186 (5%)
Query: 18 DVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVE 77
DVK + + E +++ T E S + L + + + V +
Sbjct: 6 DVKNLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFD 65
Query: 78 SENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKT 137
E N ++ + K + K+ + KK ++ + K + +
Sbjct: 66 VEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNK 125
Query: 138 VDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKN 197
D+ + + K++ ++ KI+ + + +
Sbjct: 126 NDEPAFQTNGEV-----------KMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNP 174
Query: 198 KELKNV 203
K + ++
Sbjct: 175 KPVVHL 180
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.1 bits (69), Expect = 1.1
Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 13/215 (6%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
E + +K + S Q+ E+E+ SK R ++ L
Sbjct: 382 KELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQ 441
Query: 333 RELQKQNKAIR-----EENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRG 387
+K + R EE LQ + + +E + ++ + TL+E +++ K +
Sbjct: 442 DLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQA 501
Query: 388 DNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTE--NGLRKQISMYGEKYDEFQQTL 445
+ + R+ ++KE+ ++ + E + + L++Q K E +Q L
Sbjct: 502 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561
Query: 446 SRSNEIFAGFKSEMESMSSKINKLEKETATWKQRW 480
GF+ E M ++I L+ + K
Sbjct: 562 KE------GFQKESRIMKNEIQDLQTKMRRRKACT 590
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 30.3 bits (69), Expect = 1.3
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 73 NVKVESENKTNENSKEDTVK---------IDTEVKKKEVD-ETVKKNEVELKSKEEVKSE 122
+ K + NE S E V+ + TE K +++ K++ S E ++
Sbjct: 176 HFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEER 235
Query: 123 VLKEVEKE 130
++ E++
Sbjct: 236 LVAIAEQD 243
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 30.7 bits (69), Expect = 1.6
Identities = 17/125 (13%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 53 PEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVE 112
P ++ + + E V+++ +K E ++ ++ + + E + + +
Sbjct: 90 PGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFD 149
Query: 113 LKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNEN--------KDAIKVEE 164
+ +K + E + T +KE ++ + + + K+AI+VE
Sbjct: 150 ILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVER 209
Query: 165 KKNNE 169
E
Sbjct: 210 DGMQE 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 1.7
Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 94 DTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEV-EKESKKEEKTVDKKEQEQKNDDKNM 152
D + K + ET + E + + K E ++++ + K++E + + E+E +
Sbjct: 312 DPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371
Query: 153 KNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKK 205
K ++D K E K D V + + + E +++ ++ LK K+
Sbjct: 372 KKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKE 424
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 1.8
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 325 REKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMK 384
RE E + +L K+ + + + + + + + + + ++ E N++ K K
Sbjct: 8 RENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHE-RNKIAVEIGKRRK 66
Query: 385 LRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEM 420
++ K RE++ + E E E+ + K K
Sbjct: 67 KGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.3 bits (68), Expect = 1.9
Identities = 13/140 (9%), Positives = 49/140 (35%), Gaps = 5/140 (3%)
Query: 67 SENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKE 126
+ E N++ ++ ++ +K K+++E+ + + V ++ ++
Sbjct: 15 PRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPV-NDTIEN 73
Query: 127 VEK--ESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSK 184
+ + E+ ++ ++++ K E + + + ++ S+
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLD-RCFYLAGLPRPDVGLSDEKISQ 132
Query: 185 ESDKAKTDTEQKNKELKNVK 204
+E K L+ +
Sbjct: 133 IEKLGIKVSEHKE-SLQKIL 151
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
polymerization, protein binding; 2.29A {Homo sapiens}
Length = 279
Score = 29.9 bits (66), Expect = 2.3
Identities = 20/103 (19%), Positives = 39/103 (37%)
Query: 187 DKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAV 246
+K DTE K KE + K+ D+ G + +K+ T P + A +
Sbjct: 163 EKMLQDTEDKRKEKRKQKQKNLDRGGSGGSGGSGGSGGSGGSKRHPSTLPVISDARSVLL 222
Query: 247 KTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHD 289
+ I+ + Q + ++ I+S++ + Y D
Sbjct: 223 EAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYSD 265
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 30.0 bits (68), Expect = 2.3
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 273 DEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC 332
D+K++ NI S K + + KE + +E EN
Sbjct: 43 DKKWRRTQFLTEASKKLINICS-------KAVGAKKKAKEADGDTSEIPPQVKEAYENGT 95
Query: 333 RELQKQNKAIREENLQKFR-------EEEEKRKNVSVKLENTLSEISNQVQES 378
+ ++ + + Q + ++ + + + + + + N + ES
Sbjct: 96 LKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHES 148
>1abr_A Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: d.165.1.1
Length = 251
Score = 29.6 bits (66), Expect = 2.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNKT 382
+ I + + + + + LEN +S VQES T
Sbjct: 169 RYISNRVRVSIQTGTAFQPDAAMISLENNWDNLSRGVQESVQDT 212
>1m2t_A MLA, mistletoe lectin I A chain, M; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: d.165.1.1 PDB: 2r9k_A* 3cef_A* 3d7w_A*
3o5w_A* 1pum_A* 1sz6_A* 1puu_A* 2rg9_A* 1onk_A* 1oql_A*
1ce7_A* 1tfm_A* 1pc8_A* 1yf8_A* 2mll_A*
Length = 254
Score = 29.6 bits (66), Expect = 2.6
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVSV-KLENTLSEISNQVQESNNKT 382
I Q +V + +LE + + S QVQ S +
Sbjct: 170 NPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGV 213
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.3 bits (66), Expect = 2.7
Identities = 8/80 (10%), Positives = 25/80 (31%)
Query: 64 SPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV 123
+ + + + +E + + E ++E + E K E+
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 124 LKEVEKESKKEEKTVDKKEQ 143
+ ++ E K + + +
Sbjct: 62 AAAKAQIAELEAKLSEMEHR 81
>2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin,
agglutinin abrin glycoprotein, hydrolase, lectin, plant
defense; HET: NDG NAG; 2.60A {Abrus precatorius} PDB:
2q3n_A*
Length = 258
Score = 29.3 bits (65), Expect = 2.7
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNKT 382
+ + + + + + S + LENT +S VQ + T
Sbjct: 168 RYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDT 211
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.4 bits (65), Expect = 2.9
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 7/144 (4%)
Query: 329 ENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGD 388
+NLC ++ Q K ++EN + ++RK LE+ + + K K + D
Sbjct: 88 DNLCNDVNSQIKTWQKENYHHTLMQIKERK----DLEDLFKKAQKPWAKLLAKVEKAKAD 143
Query: 389 NLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRS 448
K R Q D +++K + ++K + ++++Q ++
Sbjct: 144 YHSACKTERSATNQERNANA---DSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEI 200
Query: 449 NEIFAGFKSEMESMSSKINKLEKE 472
+ + + +M S+ K EK
Sbjct: 201 TKYNSVYIEDMTSVFEKCQTFEKT 224
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 29.2 bits (66), Expect = 3.1
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 79 ENKTNENSKEDTVKIDTEVKKKEVDET-VKKNEVEL--------KSKEEVKSEVLKEVEK 129
+ + E + D VK ++ DE K E+EL E V ++ +E EK
Sbjct: 178 KLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237
Query: 130 ESKKEEKTVDKKEQEQKNDDKNM 152
+K+ ++E ++DD NM
Sbjct: 238 YAKESL------KEEDESDDDNM 254
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 29.5 bits (67), Expect = 3.5
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 311 KEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSE 370
+I L+ L +EK+ L +++ ++E N +EE +R
Sbjct: 3 SKIAALKEKIAAL-KEKIAALKEKIKDTELGMKELNEILIKEETVRRT------------ 49
Query: 371 ISNQVQE 377
+ N++QE
Sbjct: 50 LHNELQE 56
Score = 28.4 bits (64), Expect = 6.5
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 302 KQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVS 361
+IA L+ + L +EK+ L +++ + +E + +EE R+
Sbjct: 3 SKIAALKEKIAAL----------KEKIAALKEKIKDTELGM-KELNEILIKEETVRR--- 48
Query: 362 VKLENTLSE 370
L N L E
Sbjct: 49 -TLHNELQE 56
>3px8_X Preproricin; toxin, protein-ligand complex, hydrolase, ribosome
inactivating protein, N-glycosidase, pterin,
hydrolase-INHI complex; HET: JP2; 1.29A {Ricinus
communis} PDB: 3px9_X* 1br5_A* 1apg_A* 1fmp_A* 1il3_A*
1il4_A* 1il5_A* 1il9_A* 2aai_A* 3rti_A* 3rtj_A* 1ift_A
1ifs_A 1ifu_A* 2pjo_A 1rtc_A 1br6_A* 2pjn_A 2p8n_A
2r2x_A ...
Length = 258
Score = 29.3 bits (65), Expect = 3.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNKT 382
+ I E + R + S + LEN+ +S +QESN
Sbjct: 179 QYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGA 222
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 4.2
Identities = 17/88 (19%), Positives = 47/88 (53%)
Query: 297 SKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEK 356
++ E + + E E+ + K + +KL++ ELQ++++ +++ + +E EEK
Sbjct: 322 EERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEK 381
Query: 357 RKNVSVKLENTLSEISNQVQESNNKTMK 384
R+ + N ++ Q+++++T++
Sbjct: 382 RRQFEDEKANWEAQQRILEQQNSSRTLE 409
Score = 27.9 bits (61), Expect = 9.9
Identities = 19/113 (16%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 77 ESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEV----KSEVLKEVEKESK 132
+N N+ + E +++E +KK E+E++ E+ K + LK+ E E +
Sbjct: 302 GVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQ 361
Query: 133 KEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKE 185
+ + + K + Q + + + + +D E + ++ + +++ K+
Sbjct: 362 RRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKK 414
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.2 bits (65), Expect = 4.4
Identities = 13/140 (9%), Positives = 49/140 (35%), Gaps = 5/140 (3%)
Query: 67 SENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKE 126
+ E N++ ++ ++ +K K+++E+ + + V ++ ++
Sbjct: 15 PRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPV-NDTIEN 73
Query: 127 VEK--ESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSK 184
+ + E+ ++ ++++ K E + + + ++ S+
Sbjct: 74 LRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLD-RCFYLAGLPRPDVGLSDEKISQ 132
Query: 185 ESDKAKTDTEQKNKELKNVK 204
+E K L+ +
Sbjct: 133 IEKLGIKVSEHKE-SLQKIL 151
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 28.6 bits (64), Expect = 5.2
Identities = 9/98 (9%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 70 EVTNVKVESENKTNENSKEDT------VKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV 123
E++ +KV ++ K + V +K + V L ++++
Sbjct: 103 EIS-IKVMVQDMLTGIEKLVSVAFSTFVAKPVGKEKIHL------KPVTLLTEQDHVEHN 155
Query: 124 LKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIK 161
L ++ + + + ++ + ++ + ++
Sbjct: 156 LAAERRKVRLQHEDTFNNLMKESSKFDDLIFDEEEGAV 193
>1ggp_A TKL-1, protein (lectin 1 A chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: d.165.1.1
Length = 234
Score = 28.4 bits (63), Expect = 5.3
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNK 381
+ I+ + + + + LEN + +S VQ S+
Sbjct: 152 RYIQNNVDVSIETQSAFAADAAMISLENNWANLSALVQGSSGG 194
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 6.1
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 251 VSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQ------- 303
V+ K + + P +I+S EL +KQ K+
Sbjct: 122 VNYSSEVKENSVDSDDKAKVPP--LIRIVS--GLELSD--------TKQKGKKFLVIAYE 169
Query: 304 ----IAL-LQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQ-KFREEEEKR 357
IA+ L EIL EN+ + + ++ L ++ + + +Q F++ E+++
Sbjct: 170 PFENIAIELPP-NEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQ 228
Query: 358 KNV 360
+V
Sbjct: 229 ADV 231
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 28.9 bits (64), Expect = 6.4
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 315 TLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKN 359
+ ++L+ E L L L+ N IR++ L ++
Sbjct: 906 ARNEADEKLSAE-LSRL-EALRAVNPNIRDDELTAIESNRQQVME 948
>3hiq_A Vacuolar saporin; ribosome inactivating proteins, RIPS, hydrolase,
plant defense, protein synthesis inhibitor, toxin; 2.19A
{Saponaria officinalis}
Length = 345
Score = 28.6 bits (63), Expect = 6.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 362 VKLENTLSEISNQVQESNNKT 382
+ LEN +S + +NN
Sbjct: 289 IILENNWGLLSRAAKTANNGV 309
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 6.5
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 270 QTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLE 329
+ E + + + + Y N + + E Q A L + + EN + T +
Sbjct: 168 REAPEDIQDLMDIFGDRYCALNNKA-TGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQ 226
Query: 330 NLCRELQKQNKAI 342
E+QKQ +A+
Sbjct: 227 RAEEEIQKQTQAM 239
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.4 bits (62), Expect = 7.2
Identities = 42/351 (11%), Positives = 101/351 (28%), Gaps = 22/351 (6%)
Query: 175 AKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKT 234
+K+ +++ + V + E + + Q +
Sbjct: 373 LAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIE 432
Query: 235 SPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILS 294
+ P + + D L++ ++ + D + ++ + +
Sbjct: 433 QGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYK 492
Query: 295 LLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLC---RELQKQNKAIREENLQKFR 351
L + +L + + R+ + LC EL + +
Sbjct: 493 PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGS 552
Query: 352 EEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELL 411
E L++ LS + +E L+ N DM KF L Q +E L
Sbjct: 553 EVVN-------VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEAL 605
Query: 412 DYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEK 471
E+ + GL ++ +K + + + S++ F+ K + + L
Sbjct: 606 SVT----ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVL-- 659
Query: 472 ETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522
+ +++ ++E+ + L C + R
Sbjct: 660 ------KNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFAR 704
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 28.5 bits (62), Expect = 8.6
Identities = 42/388 (10%), Positives = 110/388 (28%), Gaps = 20/388 (5%)
Query: 107 KKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKK 166
++ E K + + + E E EKE + K + + +++ +I KK
Sbjct: 592 QEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKK 651
Query: 167 NNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQD 226
E +V +++ + + ++ N+ K N + +
Sbjct: 652 TLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNN 711
Query: 227 KNKKQGKTSPPDTGASVN---------------AVKTPAVSIKEHPKTDVMLQMFNDSQT 271
N T G +++ E ++ + +++T
Sbjct: 712 NNMDYSFTETKYEGNVPILVYEMPTTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKT 771
Query: 272 PDEKFKIISQKYSELYHDFNI-LSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLEN 330
+ + + ++L SK + + N + + LE N
Sbjct: 772 NKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALN 831
Query: 331 LCRELQKQNKAIREENLQKFREEEEKRKNVSVK-LENTLSEISNQVQESNNKTMKLRGDN 389
+ E K++ ++ + + + + + + ++
Sbjct: 832 IALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYG 891
Query: 390 LDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSN 449
+ K +E L + + L + + ++ + + Y + SN
Sbjct: 892 YENYLKLQEQLELAENDFKTLEN---ILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSN 948
Query: 450 EIFAGFKSEMESMSSKINKLEKETATWK 477
E S E IN ++ +
Sbjct: 949 ESLKNLVSYFEENDKYINDMQNKVNDPT 976
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 28.1 bits (63), Expect = 8.6
Identities = 14/133 (10%), Positives = 41/133 (30%), Gaps = 10/133 (7%)
Query: 321 QELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNN 380
++ E L RE Q ++ ++ + + L + ++ +
Sbjct: 226 FRISVESLNRADREAQA--------YGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGD 277
Query: 381 KTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDE 440
++ + + ++ + + + L +Y+E +K E + S
Sbjct: 278 VRIRFQ-EFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK-EKVGKVPFSYCSSVASR 335
Query: 441 FQQTLSRSNEIFA 453
+ E +A
Sbjct: 336 IIAFSDQDEEKYA 348
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.4 bits (64), Expect = 8.7
Identities = 14/88 (15%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 115 SKEEVKSEVLKEVEK---ESKKEEKTVDKKEQEQK---NDDKNMKNENKDAIKVEEKKNN 168
+++E++ V ++ E +K ++ V + Q + K ++ E D + ++K
Sbjct: 508 NEDEIQKMV-RDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE-EAGDKLPADDKTAI 565
Query: 169 EGDKSVAKIEVDQKSKESDKAKTDTEQK 196
E + + + + K + +AK +
Sbjct: 566 ESALTALETALKGEDKAAIEAKMQELAQ 593
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases,
HSC70, actin) superfamily, acetate kinase, isobutyrate
kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP:
c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Length = 381
Score = 27.9 bits (63), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 509 AALLKLCRTLQTERAEMLAKLNGAGG-YSYL 538
L+ LC + + EM ++ G GG +YL
Sbjct: 221 TQLVDLCFSGKFTYEEMKKRIVGNGGLVAYL 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.300 0.119 0.304
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,185,318
Number of extensions: 400473
Number of successful extensions: 1515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 368
Length of query: 565
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 466
Effective length of database: 3,937,614
Effective search space: 1834928124
Effective search space used: 1834928124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 60 (27.6 bits)