RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy825
(565 letters)
>d1uq5a_ d.165.1.1 (A:) Ricin A-chain {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 263
Score = 30.7 bits (69), Expect = 0.44
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNKTMK 384
+ I E + R + S + LEN+ +S +QESN
Sbjct: 178 QYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFA 223
>d2q3na1 d.165.1.1 (A:2-248) Agglutinin-1 chain A {Abrus precatorius
[TaxId: 3816]}
Length = 247
Score = 30.3 bits (68), Expect = 0.46
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVSV-KLENTLSEISNQVQESNNKT 382
+ + + + + + S+ LENT +S VQ + T
Sbjct: 167 RYVSKLVVISLSNRAAFQPDPSMLSLENTWEPLSRAVQHTVQDT 210
>d1m2ta_ d.165.1.1 (A:) Mistletoe lectin I A-chain {European
mistletoe (Viscum album) [TaxId: 3972]}
Length = 248
Score = 30.2 bits (68), Expect = 0.55
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVSV-KLENTLSEISNQVQESNNKT 382
I Q +V + +LE + + S QVQ S +
Sbjct: 170 NPILWRARQYINSGASFLPDVYMLELETSWGQQSTQVQHSTDGV 213
>d1abra_ d.165.1.1 (A:) Abrin A-chain {Abrus precatorius [TaxId:
3816]}
Length = 251
Score = 29.1 bits (65), Expect = 1.1
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNKT 382
+ I + + + + + LEN +S VQES T
Sbjct: 169 RYISNRVRVSIQTGTAFQPDAAMISLENNWDNLSRGVQESVQDT 212
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 28.7 bits (64), Expect = 1.4
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 296 LSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQK 349
LS + + L + ++ ++TR KLE+L +L ++ + + LQ
Sbjct: 88 LSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQD 141
>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId:
28503]}
Length = 251
Score = 28.4 bits (63), Expect = 2.4
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVS-VKLENTLSEISNQVQESNNK 381
+ I +E + ++ N + +EN S +S +VQ S +
Sbjct: 168 RYIEQEVRRSLQQLTSFTPNALMLSMENNWSSMSLEVQLSGDN 210
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
{Zymomonas mobilis [TaxId: 542]}
Length = 372
Score = 28.3 bits (62), Expect = 2.5
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 307 LQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKR 357
L EIL +T + + +QK +I E +F ++ R
Sbjct: 324 LIRAGEIL----GAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRAR 370
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu
[TaxId: 10677]}
Length = 174
Score = 27.7 bits (61), Expect = 2.7
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 348 QKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKE 407
+ K TL +I+ + T++ + + + F + + E
Sbjct: 89 ADLIDCAAVYSGGQWK-NRTLEQIARDLCAPYGVTVRWELSDKESSAAFPGFTLDHSETV 147
Query: 408 QELLD 412
E L
Sbjct: 148 YEALV 152
>d1ggpa_ d.165.1.1 (A:) Lectin 1 A-chain {Mongolian snake-gourd
(Trichosanthes kirilowii) [TaxId: 3677]}
Length = 234
Score = 27.9 bits (62), Expect = 2.7
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 340 KAIREENLQKFREEEEKRKNVSV-KLENTLSEISNQVQESNNK 381
+ I+ + + ++ LEN + +S VQ S+
Sbjct: 152 RYIQNNVDVSIETQSAFAADAAMISLENNWANLSALVQGSSGG 194
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin
binding domain {Salmonella typhimurium [TaxId: 90371]}
Length = 145
Score = 26.9 bits (59), Expect = 3.6
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 9 REKILKN-KLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKS 67
R +IL N + A+ KA CS+ ++ + + T + +T+ P+K++LA +A
Sbjct: 59 RAEILPNDTIKSAAL---KAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAR 115
Query: 68 ENEVTNVKVESE 79
E +T +K E++
Sbjct: 116 EAGLTRLKGETD 127
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.7 bits (56), Expect = 5.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 264 QMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENS 319
Q+FND+ +E + + + Y ++ + + E+ AL + +E+ TL N
Sbjct: 24 QVFNDALVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANP 79
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 27.4 bits (60), Expect = 5.1
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 317 ENSKQELTREKLENLCRELQKQ-NKAIREENLQKFREEEEKRKN 359
++ + R+++E L R Q + + + + KF + R N
Sbjct: 2 QDPRNLPIRQQMEALIRRKQAEITQGLESIDTVKFHADTWTRGN 45
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.5 bits (60), Expect = 5.8
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 10/141 (7%)
Query: 310 EKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLS 369
EKE+ + + +E K+ K + E+ K + E+ S
Sbjct: 617 EKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEES 676
Query: 370 EISNQVQESNNKTMKLRGDN--LDM------AKKFRELLIQYDEKEQELLDYKAKYLE-M 420
+ N L M +++++LL Q EKE EL + + +
Sbjct: 677 SHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDI 736
Query: 421 QKTE-NGLRKQISMYGEKYDE 440
T+ + ++ E
Sbjct: 737 WNTDLKAFEVGYQEFLQRDAE 757
Score = 27.1 bits (59), Expect = 6.9
Identities = 12/133 (9%), Positives = 35/133 (26%), Gaps = 10/133 (7%)
Query: 278 IISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQK 337
+ + + + + + E + N EL
Sbjct: 634 LENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYG 693
Query: 338 QNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMK-LRGDNLDMAKKF 396
+ + + +E + KL E +++ + K + +L F
Sbjct: 694 TYEYLLGMRIWSLTKERYQ------KLLKQKQEKETELENLLKLSAKDIWNTDLK---AF 744
Query: 397 RELLIQYDEKEQE 409
++ +++ E
Sbjct: 745 EVGYQEFLQRDAE 757
>d3ctka1 d.165.1.1 (A:3-248) Bouganin {Bougainvillea (Bougainvillea
spectabilis) [TaxId: 146096]}
Length = 246
Score = 26.4 bits (58), Expect = 8.6
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 340 KAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK 381
K I E + + K + LEN +IS+ + +S+ +
Sbjct: 168 KYIETEVVDRGLYGSFKPNFKVLNLENNWGDISDAIHKSSPQ 209
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone
decarboxylase, CMD {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 119
Score = 25.6 bits (56), Expect = 8.7
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 420 MQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEM 459
M++ G+ M + Y + L A F +E
Sbjct: 1 MERYRRGMEILNRMNRKSYTAIRDELEDVAPDLARFVAEF 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.300 0.119 0.304
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,742,415
Number of extensions: 78514
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 119
Length of query: 565
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 475
Effective length of database: 1,171,896
Effective search space: 556650600
Effective search space used: 556650600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.3 bits)