BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8250
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FGD + LS + G L ++GPSG GKTT L I+ ++ GQI +E NL
Sbjct: 16 FGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIY-----IEDNL 69
Query: 68 MVKVSG--FVPQHDLTV----DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE--- 118
+ FVP + V + ++ H T+ + L V + + +D ++E
Sbjct: 70 VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPK-QEIDKRVREVAE 128
Query: 119 -LGLLKCKNSVLNVLSGGERKRVALA 143
LGL + N LSGG+R+RVAL
Sbjct: 129 XLGLTELLNRKPRELSGGQRQRVALG 154
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEV 63
+FG+ +S + G + ++GPSG GKTT L I+ ++ GQI + +
Sbjct: 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADP 70
Query: 64 EKNLMVKVSGFVPQHD----LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE- 118
EK + FVP D + + ++ HMT+ + L V R + +D ++E
Sbjct: 71 EKGI------FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREV 123
Query: 119 ---LGLLKCKNSVLNVLSGGERKRVALA 143
LGL + N LSGG+R+RVAL
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALG 151
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 24/129 (18%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTL---LACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
G + G ++ I+GP+G GKTT LA + + +G ++E +L V +
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG-----------KIEWDLTV---AY 351
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
PQ+ TV+E ++ + K++ N + E LLK LG++ + +N LSG
Sbjct: 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNELSG 404
Query: 135 GERKRVALA 143
GE +RVA+A
Sbjct: 405 GELQRVAIA 413
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVD----------GQILLNGLEVEK 65
+ + G ++ I+GP+G GK+T + ++ ++ GD D G L N E K
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 66 NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
N ++ PQ+ VD + ++ LK + ++ ++K L L
Sbjct: 103 NGEIRPV-VKPQY---VDLIPKAVKGKVIELLK------KADETGKLEEVVKALELENVL 152
Query: 126 NSVLNVLSGGERKRVALA 143
+ LSGGE +RVA+A
Sbjct: 153 EREIQHLSGGELQRVAIA 170
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 16/140 (11%)
Query: 15 ESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNL 67
E L GI+ S G ++I+G SG+GK+TLL + + +G++ L G EV EK L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL-LDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 68 MV---KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-ERARTVDALLKELGLLK 123
+ + GFV Q + LT E++ ++ LKM + ER + LL ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKERG---EYLLSELGLGD 132
Query: 124 CKNSVLNVLSGGERKRVALA 143
+ LSGGE++RVA+A
Sbjct: 133 KLSRKPYELSGGEQQRVAIA 152
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23 SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
+G + ++G SGAGK+TL+ C++ + +G VDGQ L E E + G + Q
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
H + + TV ++ L L++D N E R V LL +GL +S + LSGG++
Sbjct: 90 HFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 146
Query: 138 KRVALA 143
+RVA+A
Sbjct: 147 QRVAIA 152
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23 SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
+G + ++G SGAGK+TL+ C++ + +G VDGQ L E E + G + Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
H + + TV ++ L L++D N E R V LL +GL +S + LSGG++
Sbjct: 113 HFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 138 KRVALA 143
+RVA+A
Sbjct: 170 QRVAIA 175
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKV 71
E G G ++ I+GP+G GKTT +LA + + +G +VE +L V
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-----------KVEWDLTV-- 419
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
+ PQ+ TV+E ++ + K++ N + E LLK LG++ + +
Sbjct: 420 -AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVED 471
Query: 132 LSGGERKRVALA 143
LSGGE +RVA+A
Sbjct: 472 LSGGELQRVAIA 483
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 44/148 (29%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79
I + G ++ I+GP+G GKTT + ++ GQ++ N E + D
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILA--------GQLIPNLCEDNDSW-----------D 153
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----LLKCKNSV------ 128
+ +E RLK + + V + + VD L K + LLK + V
Sbjct: 154 NVIRAFRGNELQNYFERLK-NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV 212
Query: 129 -------------LNVLSGGERKRVALA 143
L+ LSGGE +RVA+A
Sbjct: 213 VKELELENVLDRELHQLSGGELQRVAIA 240
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKV 71
E G G ++ I+GP+G GKTT +LA + + +G +VE +L V
Sbjct: 359 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-----------KVEWDLTV-- 405
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
+ PQ+ TV+E ++ + K++ N + E LLK LG++ + +
Sbjct: 406 -AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRNVED 457
Query: 132 LSGGERKRVALA 143
LSGGE +RVA+A
Sbjct: 458 LSGGELQRVAIA 469
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 44/148 (29%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79
I + G ++ I+GP+G GKTT + ++ GQ++ N E + D
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILA--------GQLIPNLCEDNDSW-----------D 139
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----LLKCKNSV------ 128
+ +E RLK + + V + + VD L K + LLK + V
Sbjct: 140 NVIRAFRGNELQNYFERLK-NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV 198
Query: 129 -------------LNVLSGGERKRVALA 143
L+ LSGGE +RVA+A
Sbjct: 199 VKELELENVLDRELHQLSGGELQRVAIA 226
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 23 SGSLLAIMGPSGAGKTTLLACIS---QRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQ 77
+G + ++G SGAGK+TL+ C++ + +G VDGQ L E E + G + Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
H + + TV ++ L L++D N E R V LL +GL +S + LSGG++
Sbjct: 113 HFNLLSSRTVFGNVALP--LELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169
Query: 138 KRVALA 143
+RVA+A
Sbjct: 170 QRVAIA 175
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 15 ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----N 66
E L GI G ++ ++GPSG+GK+T L C++ D +G+I+++G+ ++ N
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLN 75
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ + G V Q +TV ++TL A +K+ + A+ ++ LL ++GL +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAH 133
Query: 127 SVLNVLSGGERKRVALA 143
+ + LSGG+ +RVA+A
Sbjct: 134 AYPDSLSGGQAQRVAIA 150
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 11/137 (8%)
Query: 15 ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----N 66
E L GI G ++ ++GPSG+GK+T L C++ D +G+I+++G+ ++ N
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLN 96
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ + G V Q +TV ++TL A +K+ + A+ ++ LL ++GL +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAH 154
Query: 127 SVLNVLSGGERKRVALA 143
+ + LSGG+ +RVA+A
Sbjct: 155 AYPDSLSGGQAQRVAIA 171
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FG+ +++ + G +A++GPSG+GK+TLL I+ I G+I + +V +
Sbjct: 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE-- 69
Query: 68 MVKVSGFVPQHD----LTVDTLTVHEHMTLMARLKMDRNLHHVERA---RTVDALLKELG 120
+P D L ++ HMT+ + L R + V + K L
Sbjct: 70 -------LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH 122
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
+ K N LSGG+++RVA+A
Sbjct: 123 IDKLLNRYPWQLSGGQQQRVAIA 145
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
++LS ESG I+GP+GAGKT L I+ D G+ILL+G + V+
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKD--------VTDL 67
Query: 75 VPQ-HDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
P+ HD+ ++ HM + L+ + ++ + V ++L + +
Sbjct: 68 SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 132 LSGGERKRVALA 143
LSGGE++RVALA
Sbjct: 128 LSGGEQQRVALA 139
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLL---ACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
+ G ++IMGPSG+GK+T+L C+ + +G+V I N L+ ++ ++ GFV
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
Q + LT E++ L K + ER + LK L + N N LSG
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 149 GQQQRVAIA 157
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLL---ACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
+ G ++IMGPSG+GK+T+L C+ + +G+V I N L+ ++ ++ GFV
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
Q + LT E++ L K + ER + LK L + N N LSG
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 149 GQQQRVAIA 157
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
+E FG+ L+ + G L ++GPSG GKTT L I+ ++ +G+I
Sbjct: 14 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGD 72
Query: 61 LEV------EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 113
+V ++N+ MV S V H +TV+E++ ++K +R R
Sbjct: 73 RDVTYLPPKDRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151
LL+ LL N LSGG+R+RVA+A + I+V+
Sbjct: 127 ELLQIEELL---NRYPAQLSGGQRQRVAVA-RAIVVEP 160
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
+E FG+ L+ + G L ++GPSG GKTT L I+ ++ +G+I
Sbjct: 15 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGD 73
Query: 61 LEV------EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 113
+V ++N+ MV S V H +TV+E++ ++K +R R
Sbjct: 74 RDVTYLPPKDRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151
LL+ LL N LSGG+R+RVA+A + I+V+
Sbjct: 128 ELLQIEELL---NRYPAQLSGGQRQRVAVA-RAIVVEP 161
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTVDTLTV 87
++GP+GAGK+ L I+ ++ D G++ LNG ++ + GFVPQ L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI 147
+ ++ R N+ VER R V + ++LG+ + LSGGER+RVALA + +
Sbjct: 88 YRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA-RAL 141
Query: 148 IVQS 151
++Q
Sbjct: 142 VIQP 145
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH---DL 80
G ++ ++GPSG+GKTT+L I+ ++ G + + G +V+ PQ L
Sbjct: 41 GEMVGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGK--------RVTDLPPQKRNVGL 91
Query: 81 TVDTLTVHEHMTLMARLKM---DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
+ +HMT+ + ++ + E V LL+ + L N + LSGG++
Sbjct: 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151
Query: 138 KRVALA 143
+RVALA
Sbjct: 152 QRVALA 157
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 25/137 (18%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG- 73
E ++ E G+++ GP+G GKTTLL IS ++ + G+I+ NG+ + KV G
Sbjct: 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPI-----TKVKGK 79
Query: 74 --FVPQHDLTVDTLTVHEHMTLMARL---KMDRN--LHHVERARTVDALLKELGLLKCKN 126
F+P+ + ++V +++ +A L K+++N + +E +D L K+LG
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLG------ 132
Query: 127 SVLNVLSGGERKRVALA 143
LS G +RV LA
Sbjct: 133 ----ELSQGTIRRVQLA 145
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVP 76
A+ S++A GPSG GK+T+ + + +R G+I ++G ++ +N ++ GFV
Sbjct: 25 AQPNSIIAFAGPSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVS 82
Query: 77 QHDLTVDTLTVHEHMTL-MARLKMDRNLHHV---ERARTV-----DALLKELGLLKCKNS 127
Q D + T+ E++T + D +L V AR+ D L E+G K
Sbjct: 83 Q-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-- 139
Query: 128 VLNVLSGGERKRVALA 143
+SGG+R+R+A+A
Sbjct: 140 ----ISGGQRQRLAIA 151
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
LSG +G +L ++GP+GAGK+TLLA ++ G G I G +E K++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ Q V ++TL + H R ++ + L L N LS
Sbjct: 77 YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
GGE +RV LA +++Q PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
LSG +G +L ++GP+GAGK+TLLA ++ G G I G +E K++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ Q V ++TL + H R ++ + L L N LS
Sbjct: 77 YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
GGE +RV LA +++Q PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 22 ESGSLLAIMGPSGAGKTT---LLACISQRIQGDVD-GQILLNGLEVEKNLMVKVS--GFV 75
+ G ++I GPSG+GK+T ++ C+ + +G+V I N L+ ++ ++ GFV
Sbjct: 29 KEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV 88
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSG 134
Q + LT E++ L K ER + LK L + N N LSG
Sbjct: 89 FQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSG 148
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 149 GQQQRVAIA 157
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDVD-GQILLNGLEV 63
FG + +S + G +A++GPSG GKTT +LA I + G++ +L+N +
Sbjct: 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP 72
Query: 64 EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
+ + G V Q+ +TV E++ R R + E + V + ++L +
Sbjct: 73 K----YREVGMVFQNYALYPHMTVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDN 125
Query: 124 CKNSVLNVLSGGERKRVALA 143
+ LSGG+++RVALA
Sbjct: 126 LLDRKPTQLSGGQQQRVALA 145
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNG---LEVEKNLMVKVSGFV 75
+ G + A+MGP+GAGK+TL ++ + V+ G+ILL+G LE+ + + F+
Sbjct: 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFL 84
Query: 76 P-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN---- 130
Q+ + V +T+ + L + K+ R + E V K L LL S L+
Sbjct: 85 AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK---KALELLDWDESYLSRYLN 141
Query: 131 -VLSGGERKR 139
SGGE+KR
Sbjct: 142 EGFSGGEKKR 151
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
LSG +G +L ++GP+GAGK+TLLA + G G I G +E K++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ Q V ++TL + H R ++ + L L N LS
Sbjct: 77 YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
GGE +RV LA +++Q PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---G 73
LSG +G +L ++GP+GAGK+TLLA + G G I G +E K++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRA 76
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ Q V ++TL + H R ++ + L L N LS
Sbjct: 77 YLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 128
Query: 134 GGERKRVALAVQTIIVQSGFVPQ 156
GGE +RV LA +++Q PQ
Sbjct: 129 GGEWQRVRLAA--VVLQ--ITPQ 147
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQ-HDL 80
+G + I+GP+G+GKTTLL IS + G I +NG+EV K ++ S +P+ +++
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI 86
Query: 81 TVDTLTVHEHMTLMARLK-MDRNLH 104
V TV++ + L LK +DR+L
Sbjct: 87 GV---TVNDIVYLYEELKGLDRDLF 108
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
E+G + ++G +G+GKTTLL ++ + G+I L+G + L+ K G+V Q+ +
Sbjct: 35 ETGKIYVVVGKNGSGKTTLLKILAGLLA--AAGEIFLDGSPADPFLLRKNVGYVFQNPSS 92
Query: 82 -VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
+ TV E + + L E + + +L+ +GL + LSGG+++R+
Sbjct: 93 QIIGATVEEDVAFSLEI---MGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRL 149
Query: 141 ALA 143
A+A
Sbjct: 150 AIA 152
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 27 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 85
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 86 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 142
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 143 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 194
Query: 195 LKELGLLK 202
L +K
Sbjct: 195 AARLSTVK 202
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
L +K
Sbjct: 201 AARLSTVK 208
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDQATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
L +K
Sbjct: 201 AHRLSTVK 208
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKN 66
F +T +S + G +L I+G SG GKTTLL C++ Q D G+I L+G + KN
Sbjct: 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKN 72
Query: 67 LMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
+ V G++ Q + LTV+ ++ L + ER R ++A+L+ G+
Sbjct: 73 TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-IEAMLELTGIS 129
Query: 123 KCKNSVLNVLSGG 135
+ + LSGG
Sbjct: 130 ELAGRYPHELSGG 142
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 27 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 85
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 86 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 142
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 143 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 194
Query: 195 LKELGLLK 202
L +K
Sbjct: 195 AHRLSTVK 202
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 91
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 92 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 148
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 149 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 200
Query: 195 LKELGLLK 202
L +K
Sbjct: 201 AHRLSTVK 208
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 29 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 87
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 88 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 144
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 145 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 196
Query: 195 LKELGLLK 202
L +K
Sbjct: 197 AHRLSTVK 204
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 28/156 (17%)
Query: 8 FGDTNYK----------ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL 57
F D N+ +S++ SG+ A++G +G+GK+T+ + + D +G I
Sbjct: 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY--DAEGDIK 77
Query: 58 LNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVD 113
+ G V K N + + G VPQ DT+ +E + + K+D V +A T
Sbjct: 78 IGGKNVNKYNRNSIRSIIGIVPQ-----DTILFNETIKYNILYGKLDATDEEVIKA-TKS 131
Query: 114 ALLKEL--GLLKCKNSVLN----VLSGGERKRVALA 143
A L + L K ++++ LSGGER+R+A+A
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS------GFV 75
E+G I+GPSGAGKTT + I+ + G++ + V N + V G V
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMV 87
Query: 76 PQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
Q LT E++ + +KM + E + V+ + K L + N LSG
Sbjct: 88 FQTWALYPNLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 135 GERKRVALA 143
G+++RVALA
Sbjct: 144 GQQQRVALA 152
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQH 78
+ G ++ I+G +G+GK+TL I QR +GQ+L++G ++ + N + + G V Q
Sbjct: 29 KQGEVIGIVGRAGSGKSTLTKLI-QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD 87
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ ++ + + +++ ++ + A D + + L + N+++ LSG
Sbjct: 88 NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE---LREGYNTIVGEQGAGLSG 144
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G+R+R+A+A +V + + D L +M RN+H + + RTV +
Sbjct: 145 GQRQRIAIA--RALVNNPKILIFDEATSALDYESEHVIM------RNMHKICKGRTVIII 196
Query: 195 LKELGLLK 202
L +K
Sbjct: 197 AHRLSTVK 204
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+F D SLS SGS+ A++GPSG+GK+T+L+ + R+ G I L+G ++ +
Sbjct: 389 PIFQDF----SLS--IPSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQ 441
Query: 66 ----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELG 120
L K+ G V Q + + ++ E++ A ++R A +A+
Sbjct: 442 LNPVWLRSKI-GTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRN 499
Query: 121 LLKCKNSVLN----VLSGGERKRVALA 143
+ N+V+ +LSGG+++R+A+A
Sbjct: 500 FPQGFNTVVGEKGVLLSGGQKQRIAIA 526
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+F D SLS SGS+ A++GPSG+GK+T+L+ + R+ G I L+G ++ +
Sbjct: 358 PIFQDF----SLS--IPSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQ 410
Query: 66 ----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELG 120
L K+ G V Q + + ++ E++ A ++R A +A+
Sbjct: 411 LNPVWLRSKI-GTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRN 468
Query: 121 LLKCKNSVLN----VLSGGERKRVALA 143
+ N+V+ +LSGG+++R+A+A
Sbjct: 469 FPQGFNTVVGEKGVLLSGGQKQRIAIA 495
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS------GFV 75
E+G I+GPSGAGKTT + I+ + G++ + V N + V G V
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMV 87
Query: 76 PQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
Q LT E++ + +KM + E + V+ + K L + N LSG
Sbjct: 88 FQTWALYPNLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 135 GERKRVALA 143
+++RVALA
Sbjct: 144 AQQQRVALA 152
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDV--DGQILLNGLEVEKNLMV 69
E++S + G L + G +G+GK+TLL ++ I+ GDV DG+ G E+ +N+ +
Sbjct: 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE-RKKGYEIRRNIGI 82
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTVDALLKELGLLKCKNSV 128
F D E + DR+ + V++A L K+ V
Sbjct: 83 ---AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG----LDFDSFKDRV 135
Query: 129 LNVLSGGERKRVALA 143
LSGGE++RVA+A
Sbjct: 136 PFFLSGGEKRRVAIA 150
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
+ LS E G LA++GPSG GK+T++A + +R + G+I ++G E++
Sbjct: 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALL-ERFYDTLGGEIFIDGSEIK 1144
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NL-MVKVSGFVPQHDL 80
+G +A++G SG GK+T+++ + R + G+I ++G++V NL ++ + V +
Sbjct: 443 AGQTVALVGSSGCGKSTIISLL-LRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERK 138
+ T+ E+++L + + + +K L G LSGG+++
Sbjct: 502 ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561
Query: 139 RVALA 143
R+A+A
Sbjct: 562 RIAIA 566
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDV--DGQILLNGLEVEKNLMV 69
E++S + G L + G +G+GK+TLL ++ I+ GDV DG+ G E+ +N+ +
Sbjct: 26 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE-RKKGYEIRRNIGI 84
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTVDALLKELGLLKCKNSV 128
F D E + DR+ + V++A L K+ V
Sbjct: 85 ---AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG----LDFDSFKDRV 137
Query: 129 LNVLSGGERKRVALA 143
LSGGE++RVA+A
Sbjct: 138 PFFLSGGEKRRVAIA 152
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVE 64
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G +
Sbjct: 52 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFC 104
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ G + ++ + + + + +++ +++ ++ A + +L E G+
Sbjct: 105 SQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI--- 159
Query: 125 KNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 160 ------TLSGGQRARISLA 172
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 20/153 (13%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
+++ H +G + + + G ++ ++G +GAGKTT L+ I+ ++ G+I+ NG
Sbjct: 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNG 67
Query: 61 LEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLHHV-ERAR 110
++ ++ VP+ LTV+E++ A + D R+L +
Sbjct: 68 QDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFP 127
Query: 111 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+ LK+LG LSGGE++ +A+
Sbjct: 128 RLKERLKQLG---------GTLSGGEQQXLAIG 151
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVE 64
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G +
Sbjct: 34 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFC 86
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ G + ++ + + + + +++ +++ ++ A + +L E G+
Sbjct: 87 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI--- 141
Query: 125 KNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 142 ------TLSGGQRARISLA 154
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVE 64
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G +
Sbjct: 22 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFC 74
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ G + ++ + + + + +++ +++ ++ A + +L E G+
Sbjct: 75 SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI--- 129
Query: 125 KNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 130 ------TLSGGQRARISLA 142
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
+SG +A++G SG GK+T + + QR+ +DG + ++G ++ + ++ G V Q
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 79 DLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLK---ELGLLKCKNSVLNVLSG 134
+ T T+ E++ + MD V+ A D ++K + L + LSG
Sbjct: 473 PVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ--LSG 529
Query: 135 GERKRVALA 143
G+++R+A+A
Sbjct: 530 GQKQRIAIA 538
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK---- 70
+ LS + G LA++G SG GK+T++ + +R + G + L+G E+ K L V+
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLL-ERFYDPMAGSVFLDGKEI-KQLNVQWLRA 1107
Query: 71 VSGFVPQHDLTVDTLTVHEHMTL-----------MARLKMDRNLHHVERARTVDALLKEL 119
G V Q + D ++ E++ + R + N+H +D+L +
Sbjct: 1108 QLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQF-----IDSLPDKY 1161
Query: 120 GLLKCKNSVLNVLSGGERKRVALA 143
LSGG+++R+A+A
Sbjct: 1162 NTRVGDKGTQ--LSGGQKQRIAIA 1183
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
+SG +A++G SG GK+T + + QR+ +DG + ++G ++ + ++ G V Q
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 79 DLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLK---ELGLLKCKNSVLNVLSG 134
+ T T+ E++ + MD V+ A D ++K + L + LSG
Sbjct: 473 PVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ--LSG 529
Query: 135 GERKRVALA 143
G+++R+A+A
Sbjct: 530 GQKQRIAIA 538
Score = 32.3 bits (72), Expect = 0.17, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK---- 70
+ LS + G LA++G SG GK+T++ + +R + G + L+G E+ K L V+
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLL-ERFYDPMAGSVFLDGKEI-KQLNVQWLRA 1107
Query: 71 VSGFVPQHDLTVDTLTVHEHMTL-----------MARLKMDRNLHHVERARTVDALLKEL 119
G V Q + D ++ E++ + R + N+H +D+L +
Sbjct: 1108 QLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQF-----IDSLPDKY 1161
Query: 120 GLLKCKNSVLNVLSGGERKRVALA 143
LSGG+++R+A+A
Sbjct: 1162 NTRVGDKGTQ--LSGGQKQRIAIA 1183
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G
Sbjct: 22 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSG---RI 71
Query: 66 NLMVKVSGFVP---QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
+ + S +P + ++ + + + +++ +++ ++ A + +L E G+
Sbjct: 72 SFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI- 128
Query: 123 KCKNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 129 --------TLSGGQRARISLA 141
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77
+G A+ G ++ I+GP+G GKTT + I D +G + EK ++ + PQ
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVT-----PEKQIL----SYKPQ 337
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
TV +++ ++ + + E + K L L + S +N LSGGE
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEE------VTKRLNLHRLLESNVNDLSGGEL 391
Query: 138 KRVALA 143
+++ +A
Sbjct: 392 QKLYIA 397
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-------LEVEKNLMVKVSGFV 75
+G +A++G SG+GK+T+ + I++ D +G+IL++G L +N + VS V
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDID-EGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
+ TV + +R +++ ++ + L + +N VL LSGG
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL--LSGG 484
Query: 136 ERKRVALA 143
+R+R+A+A
Sbjct: 485 QRQRIAIA 492
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 10 DTNYKE---SLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
+ NY + +L GI + G + AI+G +G GK+TL + ++ G+IL + +
Sbjct: 14 NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPI 72
Query: 64 E---KNLMV--KVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
+ K +M + G V Q D + + +V++ ++ A ++ L E + VD LK
Sbjct: 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALK 129
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
G+ K+ + LS G++KRVA+A
Sbjct: 130 RTGIEHLKDKPTHCLSFGQKKRVAIA 155
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEK 65
+ G +A++GP+G+GKTT++ + + DVD GQIL++G+++ K
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFY--DVDRGQILVDGIDIRK 421
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G
Sbjct: 52 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSG---RI 101
Query: 66 NLMVKVSGFVP---QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
+ + S +P + ++ + + + +++ +++ ++ A + +L E G+
Sbjct: 102 SFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI- 158
Query: 123 KCKNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 159 --------TLSGGQRARISLA 171
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQ 49
KE L GI+ E G + ++GP+GAGKTT L IS I+
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+ D N+K E G LLA+ G +GAGKT+LL I ++ +G+I +G
Sbjct: 52 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSG---RI 101
Query: 66 NLMVKVSGFVP---QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
+ + S +P + ++ + + + +++ +++ ++ A + +L E G+
Sbjct: 102 SFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF--AEKDNIVLGEGGI- 158
Query: 123 KCKNSVLNVLSGGERKRVALA 143
LSGG+R R++LA
Sbjct: 159 --------TLSGGQRARISLA 171
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQHD 79
SG ++AI+GP+GAGK+TLL ++ + G+ L G + + + + + Q+
Sbjct: 36 SGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAVMRQYS 94
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERAR-TVDALLKELGLLKCKNSVLNVLSGGERK 138
+V E ++M R + + R + ++ + L VLSGGE++
Sbjct: 95 ELAFPFSVSE------VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQ 148
Query: 139 RVALA 143
RV LA
Sbjct: 149 RVQLA 153
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-------LEVEKNLMVKVSGFV 75
+G +A++G SG+GK+T+ + I++ D +G IL++G L +N + VS V
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
+ TV + +R +++ ++ + L + +N VL LSGG
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL--LSGG 484
Query: 136 ERKRVALA 143
+R+R+A+A
Sbjct: 485 QRQRIAIA 492
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 8 FGDTNYKESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
F + +E+L ++ + G LA++GPSGAGK+T+L + R G I ++G ++
Sbjct: 61 FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDIS 119
Query: 65 KNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV-DALLKELG 120
+ + G VPQ D + T+ +++ + + +A + DA++
Sbjct: 120 QVTQASLRSHIGVVPQ-DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPE 178
Query: 121 LLKCKNSVLNV-LSGGERKRVALAVQTIIVQSGFV 154
+ + + LSGGE++RVA+A +TI+ G +
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIA-RTILKAPGII 212
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
E G +A +G SG GK+TL+ I R GQIL++G ++ L + G V Q
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSG 134
++ TV E++ L D + VE A+ +A + L + ++ + LSG
Sbjct: 424 NILFSD-TVKENILLGRPTATDEEV--VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480
Query: 135 GERKRVALA 143
G+++R+++A
Sbjct: 481 GQKQRLSIA 489
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-------GFVP 76
G + AIMGP+G+GK+TL A ++ R +V G +E + ++ +S G
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTG----GTVEFKGKDLLALSPEDRAGEGIFM 82
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVE---RARTVDALLKELGLLKCKNSVL---- 129
V+ V L L R+ E R D + +++ LLK +L
Sbjct: 83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 130 NV-LSGGERKR 139
NV SGGE+KR
Sbjct: 143 NVGFSGGEKKR 153
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTV 82
G + +GPSG GK+TLL I+ ++ G + + + + G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87
Query: 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142
L+V E+M+ +L + +R V +L+ LL K LSGG+R+RVA+
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQRVAI 144
Query: 143 A 143
Sbjct: 145 G 145
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTV 82
G + +GPSG GK+TLL I+ ++ G + + + + G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87
Query: 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142
L+V E+M+ +L + +R V +L+ LL K LSGG+R+RVA+
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQRVAI 144
Query: 143 A 143
Sbjct: 145 G 145
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-GFVPQHDLTV 82
G + +GPSG GK+TLL I+ ++ G + + + + G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 87
Query: 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142
L+V E+M+ +L + +R V +L+ LL K LSGG+R+RVA+
Sbjct: 88 PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQRVAI 144
Query: 143 A 143
Sbjct: 145 G 145
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-------GFVP 76
G + AIMGP+G+GK+TL A ++ R +V G +E + ++ +S G
Sbjct: 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTG----GTVEFKGKDLLALSPEDRAGEGIFM 101
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVE---RARTVDALLKELGLLKCKNSVL---- 129
V+ V L L R+ E R D + +++ LLK +L
Sbjct: 102 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161
Query: 130 NV-LSGGERKR 139
NV SGGE+KR
Sbjct: 162 NVGFSGGEKKR 172
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
P+ D N+K E G LLA+ G +GAGKT+LL I
Sbjct: 52 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMI 84
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
P+ D N+K E G LLA+ G +GAGKT+LL I
Sbjct: 52 PVLKDINFK------IERGQLLAVAGSTGAGKTSLLMMI 84
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.5 bits (75), Expect = 0.091, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
T P D N++ SLS S +A++GP+GAGK+TL+ ++ G++L E
Sbjct: 684 TSKPQITDINFQCSLS------SRIAVIGPNGAGKSTLINVLT--------GELLPTSGE 729
Query: 63 VEKNLMVKVSGFVPQH 78
V + +++ ++ QH
Sbjct: 730 VYTHENCRIA-YIKQH 744
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.5 bits (75), Expect = 0.095, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
T P D N++ SLS S +A++GP+GAGK+TL+ ++ G++L E
Sbjct: 678 TSKPQITDINFQCSLS------SRIAVIGPNGAGKSTLINVLT--------GELLPTSGE 723
Query: 63 VEKNLMVKVSGFVPQH 78
V + +++ ++ QH
Sbjct: 724 VYTHENCRIA-YIKQH 738
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
T P D N++ SLS S +A++GP+GAGK+TL+ ++ G++L E
Sbjct: 684 TSKPQITDINFQCSLS------SRIAVIGPNGAGKSTLINVLT--------GELLPTSGE 729
Query: 63 VEKNLMVKVSGFVPQH 78
V + +++ ++ QH
Sbjct: 730 VYTHENCRIA-YIKQH 744
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDG 54
I GP+G GK+TL+ I+ G VDG
Sbjct: 465 GICGPNGCGKSTLMRAIA---NGQVDG 488
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 26/128 (20%)
Query: 24 GSLLAIMGPSGAGKTTLLAC---ISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
G +LA++G +G GK+TLL I + IQG + EV +++ GFVPQ
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI---------EVYQSI-----GFVPQFFS 76
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA-----LLKELGLLKCKNSVLNVLSGG 135
+ +V + + LM R +++ + ++ D L L L LSGG
Sbjct: 77 SPFAYSVLD-IVLMGR---STHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 136 ERKRVALA 143
+R+ + +A
Sbjct: 133 QRQLILIA 140
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG---FVPQH 78
E G +LAI G +G+GKT+LL ++L LE + + +K SG F Q
Sbjct: 62 EKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGI-IKHSGRVSFCSQF 107
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSG 134
+ T+ E++ R V+ + + K + N+VL LSG
Sbjct: 108 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITK---FAEQDNTVLGEGGVTLSG 163
Query: 135 GERKRVALA 143
G+R R++LA
Sbjct: 164 GQRARISLA 172
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG---FVPQH 78
E G +LAI G +G+GKT+LL ++L LE + + +K SG F Q
Sbjct: 62 EKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGI-IKHSGRVSFCSQF 107
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSG 134
+ T+ E++ R V+ + + K + N+VL LSG
Sbjct: 108 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITK---FAEQDNTVLGEGGVTLSG 163
Query: 135 GERKRVALA 143
G+R R++LA
Sbjct: 164 GQRARISLA 172
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVEKNLMVKVSGFVPQHDL 80
E G +LAI G +G+GKT+LL I ++ +G I +G + + G + ++ +
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSGRVSFCSQFSWIMPGTIKENII 120
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
+ + + + +++ ++ +++ + A + +L E G+ LSGG+R R+
Sbjct: 121 SGVSYDEYRYKSVVKACQLQQDI--TKFAEQDNTVLGEGGV---------TLSGGQRARI 169
Query: 141 ALA 143
+LA
Sbjct: 170 SLA 172
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58
FG+ + +S G + I+GP+G+GK+TL+ I+ ++ D +G++
Sbjct: 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYF 66
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58
FG+ + +S G + I+GP+G+GK+TL+ I+ ++ D +G++
Sbjct: 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYF 66
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
G + A++GP+G+GK+T+ A + Q + GQ+LL+G
Sbjct: 43 GEVTALVGPNGSGKSTVAALL-QNLYQPTGGQLLLDG 78
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---- 64
N LSG+ + GSL+A++G +G+GK+TL+ I + I + G++ ++ L+V
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKL 412
Query: 65 KNLMVKVSGFVPQH 78
K+L +S VPQ
Sbjct: 413 KDLRGHISA-VPQE 425
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
G + A++GP+G+GK+T+ A + Q + G++LL+G +V+ H L
Sbjct: 45 GKVTALVGPNGSGKSTVAALL-QNLYQPTGGKVLLDG-----EPLVQYD----HHYLHTQ 94
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKELGLLKCKNSVL----------- 129
V + L R + + + R T++ A+ E G +
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG 154
Query: 130 NVLSGGERKRVALA 143
N LSGG+R+ VALA
Sbjct: 155 NQLSGGQRQAVALA 168
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP---QH 78
E G +LAI G +G+GKT+LL I ++ +G I +G + + S +P +
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSG---RVSFCSQFSWIMPGTIKE 117
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
++ + + + +++ ++ +++ + A + +L E G+ LSGG+R
Sbjct: 118 NIIGVSYDEYRYKSVVKACQLQQDI--TKFAEQDNTVLGEGGV---------TLSGGQRA 166
Query: 139 RVALA 143
R++LA
Sbjct: 167 RISLA 171
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 24/134 (17%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
G + A++GP+G+GK+T+ A + Q + G++LL+G +V+ H L
Sbjct: 45 GKVTALVGPNGSGKSTVAALL-QNLYQPTGGKVLLDG-----EPLVQYD----HHYLHTQ 94
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKELGLLKCKNSVL----------- 129
V + L R + + + R T++ A+ E G +
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG 154
Query: 130 NVLSGGERKRVALA 143
N LSGG+R+ VALA
Sbjct: 155 NQLSGGQRQAVALA 168
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG---FVPQH 78
E G +LAI G +G+GKT+LL ++L LE + + +K SG F Q
Sbjct: 62 EKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGI-IKHSGRVSFCSQF 107
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSG 134
+ T+ E++ R V+ + + K + N+VL LSG
Sbjct: 108 SWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITK---FAEQDNTVLGEGGVTLSG 163
Query: 135 GERKRVALA 143
G+R R++LA
Sbjct: 164 GQRARISLA 172
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 28/138 (20%)
Query: 16 SLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS 72
+L+GI S G+L+A++G G GK++LL+ + + +VE ++ +K S
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------------KVEGHVAIKGS 67
Query: 73 -GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV--- 128
+VPQ + ++ E++ +L+ ++ ALL +L +L +
Sbjct: 68 VAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQAC----ALLPDLEILPSGDRTEIG 122
Query: 129 ---LNVLSGGERKRVALA 143
+N LSGG+++RV+LA
Sbjct: 123 EKGVN-LSGGQKQRVSLA 139
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
G + A++GP+G+GK+T+ A + Q + G++LL+G
Sbjct: 45 GKVTALVGPNGSGKSTVAALL-QNLYQPTGGKVLLDG 80
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58
FG+ + +S G + I+GP+G+GK+TL+ I+ ++ D +G++
Sbjct: 17 FGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYF 66
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 7 LFGDTNYKESLSGIA---------ESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+F NY L GIA E+G + G SG+GKTTL ++R+ GD
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEAGDVAVFFGLSGSGKTTLSTDPARRLIGD 268
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
L+AI+GP+ GKT +++R+ G+V
Sbjct: 5 LVAIVGPTAVGKTKTSVXLAKRLNGEV 31
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ-TIIV 149
MTL A K VER++ +D L+E G K L +L GE + + Q II
Sbjct: 2 MTLSAEDKA-----AVERSKMIDRNLREDGEKAAKEVKLLLLGAGESGKSTIVKQMKIIH 56
Query: 150 QSGF----VPQHDLTVDTLTVHEHMTL---MARLKMDRNLHHVERARTVDA 193
+ G+ Q+ + V + T+ + + M RLK+D E AR DA
Sbjct: 57 EDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFG----EAARADDA 103
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48
A G ++ + GPS GK+T++ C+ +RI
Sbjct: 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN 59
GS + +GP+G GKT L +++ I GD + I ++
Sbjct: 522 GSFI-FLGPTGVGKTELARALAESIFGDEESMIRID 556
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48
A G ++ + GPS GK+T++ C+ +RI
Sbjct: 20 AAVGRVVVLSGPSAVGKSTVVRCLRERI 47
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 7 LFGDTNYKESLSGIA---------ESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+F NY L GIA E G + G SG GKTTL +R+ GD
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGD 268
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 2 ETFHPLFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQG 50
ET ++G ++ + G L L GP G GKT+ + +++ I G
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 7 LFGDTNYKESLSGIA---------ESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+F NY L GIA E G + G SG GKTTL +R+ GD
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGD 268
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 7 LFGDTNYKESLSGIA---------ESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+F NY L GIA E G + G SG GKTTL +R+ GD
Sbjct: 215 MFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGD 268
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48
A G ++ + GPS GK+T++ C+ +RI
Sbjct: 20 AAVGRVVVLSGPSAVGKSTVVRCLRERI 47
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 22 ESGSL--LAIMGPSGAGKTTLLACISQRIQGDVD 53
E+G L + + GP G GKTTL I++ DV+
Sbjct: 46 EAGHLHSMILWGPPGTGKTTLAEVIARYANADVE 79
>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
Forming) From Saccharomyces Cerevisiae
Length = 467
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 58 LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR------- 110
+ G + KN+++ SGFV Q +DTL ++ + + + N + +
Sbjct: 17 IEGRHMGKNVLLLGSGFVAQP--VIDTLAANDDINVTVACRTLANAQALAKPSGSKAISL 74
Query: 111 --TVDALLKELGLLKCKNSVLNVLSGGERKRV---ALAVQTIIVQSGFVPQHDLTVDTLT 165
T D+ L ++ L + V++++ V A+ +T +V S ++ ++
Sbjct: 75 DVTDDSALDKV--LADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEI 132
Query: 166 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 203
V +T+M + +D + H+ +T+D + + G LK
Sbjct: 133 VKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKS 170
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKV 71
E++S G + ++G +G+GK+TLL+ + + + +G+I ++G+ + K
Sbjct: 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGEIQIDGVSWDSITLEQWRKA 95
Query: 72 SGFVPQ 77
G +PQ
Sbjct: 96 FGVIPQ 101
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
L I+G +G+GKTTLL + + + D+ Q G++V+
Sbjct: 5 LXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVK 42
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 SLLAIMGPSGAGKTTLLACISQRIQGDVD 53
+ + GP G+GKTT++ + R+ D D
Sbjct: 23 AFITFEGPEGSGKTTVINEVYHRLVKDYD 51
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 1 METFHP-----LFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD-- 51
+E + P + G+ + L IA+ G++ + I G G GKTT + C++ + G
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY 71
Query: 52 VDGQILLN-----GLEVEKN 66
DG + LN G++V +N
Sbjct: 72 ADGVLELNASDDRGIDVVRN 91
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
L I+G +G+GKTTLL + + + D+ Q G++V+
Sbjct: 3 LXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVK 40
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
G + I G G GKT++ I+ + G LEV K +VK + F ++D +D
Sbjct: 10 GINILITGTPGTGKTSMAEMIAAELDG-------FQHLEVGK--LVKENHFYTEYDTELD 60
Query: 84 TLTVHE 89
T + E
Sbjct: 61 THIIEE 66
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
ES + + G G+GKT+L + I + QG+V
Sbjct: 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 61
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAE-------SGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
L G N +E+ I E +G + + GP G GKT L I+Q + V
Sbjct: 39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAE-------SGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
L G N +E+ I E +G + + GP G GKT L I+Q + V
Sbjct: 53 LVGQENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
H +G + +S A +G +++I+G SG+GK+T L CI+ ++ +G I++NG +
Sbjct: 12 LHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNI 70
Query: 64 ----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-----------HHVER 108
+K+ +KV+ L V +H L + + + N+ H R
Sbjct: 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR 130
Query: 109 ARTVDALLKELGLLKCKNSVLNV-LSGGERKRVALA 143
R + L K +G+ + V LSGG+++RV++A
Sbjct: 131 ERALKYLAK-VGIDERAQGKYPVHLSGGQQQRVSIA 165
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAESGSL-------LAIMGPSGAGKTTLLACISQRIQGDV 52
G N K+ LS E+ + + + GP G GKTTL I+ +Q ++
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ-TII 148
HM M + VER++ +D L+E G + L +L GE + + Q II
Sbjct: 3 HMASMGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKII 62
Query: 149 VQSGF----VPQHDLTVDTLTVHEHMTL---MARLKMD 179
++G+ Q+ V + T+ + + M RLK+D
Sbjct: 63 HEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 100
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAESGSL-------LAIMGPSGAGKTTLLACISQRIQGDV 52
G N K+ LS E+ + + + GP G GKTTL I+ +Q ++
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAESGSL-------LAIMGPSGAGKTTLLACISQRIQGDV 52
G N K+ LS E+ + + + GP G GKTTL I+ +Q ++
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAESGSL-------LAIMGPSGAGKTTLLACISQRIQGDV 52
G N K+ LS E+ + + + GP G GKTTL I+ +Q ++
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 7 LFGDTNYKESLSGIAESGSL-------LAIMGPSGAGKTTLLACISQRIQGDV 52
G N K+ LS E+ + + + GP G GKTTL I+ +Q ++
Sbjct: 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQ 77
G +L +MG +G GKTTL+ ++ ++ D G ++ K N+ +K P+
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-------EGQDIPKLNVSMKPQKIAPK 425
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
TV L + + ++ V+ R D + +E + LSGGE
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDV--VKPLRIDDIIDQE----------VQHLSGGEL 473
Query: 138 KRVALAV 144
+RVA+ +
Sbjct: 474 QRVAIVL 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,912,769
Number of Sequences: 62578
Number of extensions: 210419
Number of successful extensions: 1145
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 173
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)