Query psy8250
Match_columns 212
No_of_seqs 266 out of 2707
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:33:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.7E-63 1.2E-67 391.2 17.3 207 1-210 5-224 (240)
2 COG1135 AbcC ABC-type metal io 100.0 2.9E-57 6.2E-62 375.1 17.6 205 1-209 4-229 (339)
3 COG1125 OpuBA ABC-type proline 100.0 7.9E-57 1.7E-61 363.5 17.3 207 1-211 4-225 (309)
4 COG3638 ABC-type phosphate/pho 100.0 1.1E-56 2.4E-61 359.3 15.9 210 1-211 6-237 (258)
5 COG1120 FepC ABC-type cobalami 100.0 5.2E-57 1.1E-61 370.8 14.3 209 1-210 5-227 (258)
6 COG3842 PotA ABC-type spermidi 100.0 1.5E-56 3.1E-61 382.7 17.1 209 1-212 8-227 (352)
7 COG1127 Ttg2A ABC-type transpo 100.0 2.6E-56 5.7E-61 358.1 16.1 208 1-211 11-235 (263)
8 COG3839 MalK ABC-type sugar tr 100.0 7.4E-56 1.6E-60 376.5 18.1 207 1-211 6-223 (338)
9 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-55 6.7E-60 355.1 17.7 185 1-191 6-197 (248)
10 COG1118 CysA ABC-type sulfate/ 100.0 2.9E-55 6.2E-60 362.6 16.8 210 1-212 5-228 (345)
11 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.8E-55 1.9E-59 356.1 16.5 210 1-211 7-227 (254)
12 COG1131 CcmA ABC-type multidru 100.0 4.8E-54 1E-58 363.7 19.2 206 2-211 8-226 (293)
13 COG1117 PstB ABC-type phosphat 100.0 3.5E-54 7.6E-59 340.3 17.0 206 1-210 10-236 (253)
14 COG2884 FtsE Predicted ATPase 100.0 4.9E-54 1.1E-58 333.9 15.8 201 1-205 4-220 (223)
15 COG1136 SalX ABC-type antimicr 100.0 8.8E-54 1.9E-58 345.5 17.6 196 1-200 4-220 (226)
16 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-53 4.7E-58 333.1 13.4 207 1-211 4-222 (245)
17 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-52 3.3E-57 363.1 19.6 207 1-211 6-224 (356)
18 PRK13537 nodulation ABC transp 100.0 2E-52 4.2E-57 356.2 19.2 206 1-210 10-226 (306)
19 COG1124 DppF ABC-type dipeptid 100.0 2.1E-52 4.6E-57 336.4 17.9 204 1-210 6-230 (252)
20 TIGR03265 PhnT2 putative 2-ami 100.0 3.3E-52 7.2E-57 360.6 20.2 207 1-211 7-224 (353)
21 PRK11432 fbpC ferric transport 100.0 4.4E-52 9.6E-57 359.4 20.4 207 1-211 9-226 (351)
22 TIGR02314 ABC_MetN D-methionin 100.0 7.4E-52 1.6E-56 356.7 20.1 206 1-210 4-229 (343)
23 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-51 2.6E-56 357.9 20.0 207 1-211 8-228 (362)
24 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-51 4.5E-56 337.5 20.0 207 1-210 3-225 (235)
25 PRK10851 sulfate/thiosulfate t 100.0 2.2E-51 4.9E-56 355.4 19.7 210 1-211 5-226 (353)
26 PRK13536 nodulation factor exp 100.0 2.4E-51 5.2E-56 353.7 19.7 207 1-211 44-261 (340)
27 COG1137 YhbG ABC-type (unclass 100.0 1.3E-52 2.8E-57 328.3 10.3 208 2-211 8-228 (243)
28 COG0411 LivG ABC-type branched 100.0 8.7E-52 1.9E-56 333.0 15.0 209 2-211 8-239 (250)
29 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-51 2.5E-56 337.8 15.8 206 2-211 7-228 (235)
30 PRK09452 potA putrescine/sperm 100.0 3.6E-51 7.8E-56 356.3 19.6 207 1-211 17-234 (375)
31 TIGR01186 proV glycine betaine 100.0 7.4E-51 1.6E-55 352.5 21.0 202 6-211 1-219 (363)
32 PRK11607 potG putrescine trans 100.0 6.9E-51 1.5E-55 354.8 20.3 208 1-212 22-240 (377)
33 cd03265 ABC_DrrA DrrA is the A 100.0 1E-50 2.2E-55 330.4 19.2 206 1-210 3-220 (220)
34 PRK11000 maltose/maltodextrin 100.0 8.8E-51 1.9E-55 353.8 20.0 207 1-211 6-223 (369)
35 TIGR01188 drrA daunorubicin re 100.0 8.8E-51 1.9E-55 345.5 19.4 202 6-211 1-213 (302)
36 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-50 4E-55 343.7 19.2 206 1-210 7-223 (303)
37 TIGR03522 GldA_ABC_ATP gliding 100.0 2.1E-50 4.5E-55 343.1 18.5 207 1-211 5-221 (301)
38 cd03259 ABC_Carb_Solutes_like 100.0 4E-50 8.6E-55 325.3 19.0 200 1-204 3-213 (213)
39 PRK11153 metN DL-methionine tr 100.0 3.7E-50 8E-55 347.0 19.9 206 1-210 4-229 (343)
40 cd03263 ABC_subfamily_A The AB 100.0 4.2E-50 9E-55 326.5 18.6 206 1-210 3-220 (220)
41 cd03219 ABC_Mj1267_LivG_branch 100.0 6.4E-50 1.4E-54 328.7 19.6 210 1-211 3-232 (236)
42 cd03296 ABC_CysA_sulfate_impor 100.0 8.9E-50 1.9E-54 328.7 19.7 209 1-210 5-225 (239)
43 cd03218 ABC_YhbG The ABC trans 100.0 9.6E-50 2.1E-54 326.8 19.4 206 1-210 3-221 (232)
44 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-49 2.4E-54 324.3 19.5 201 1-207 3-219 (220)
45 PRK09536 btuD corrinoid ABC tr 100.0 4.4E-50 9.4E-55 351.7 18.3 209 1-210 6-227 (402)
46 TIGR00960 3a0501s02 Type II (G 100.0 8.9E-50 1.9E-54 323.9 18.2 195 1-199 4-215 (216)
47 cd03256 ABC_PhnC_transporter A 100.0 7.6E-50 1.7E-54 329.0 17.5 209 1-210 3-233 (241)
48 cd03258 ABC_MetN_methionine_tr 100.0 1.6E-49 3.4E-54 325.9 19.1 206 1-210 4-229 (233)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.8E-49 3.9E-54 322.4 18.6 195 1-199 3-217 (218)
50 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.4E-49 7.3E-54 330.8 20.6 205 2-210 28-249 (269)
51 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-49 2.8E-54 325.2 17.5 205 1-209 3-227 (227)
52 cd03301 ABC_MalK_N The N-termi 100.0 3E-49 6.6E-54 320.0 19.5 200 1-204 3-213 (213)
53 PRK11264 putative amino-acid A 100.0 3.3E-49 7.1E-54 327.1 19.8 208 1-211 6-233 (250)
54 PRK11831 putative ABC transpor 100.0 4.2E-49 9.2E-54 330.2 20.6 207 1-210 10-232 (269)
55 cd03269 ABC_putative_ATPase Th 100.0 3.3E-49 7.2E-54 319.2 19.1 198 1-203 3-209 (210)
56 PRK11629 lolD lipoprotein tran 100.0 3.1E-49 6.8E-54 324.3 19.2 201 1-205 8-228 (233)
57 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-49 3E-54 328.0 17.0 209 1-210 4-234 (243)
58 PRK09493 glnQ glutamine ABC tr 100.0 3.8E-49 8.3E-54 325.0 19.4 207 1-210 4-224 (240)
59 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.3E-49 9.3E-54 325.2 19.6 206 1-210 3-224 (242)
60 PRK13637 cbiO cobalt transport 100.0 3.3E-49 7.1E-54 333.7 19.4 206 1-210 5-233 (287)
61 cd03224 ABC_TM1139_LivF_branch 100.0 3.8E-49 8.3E-54 321.1 18.9 205 1-211 3-221 (222)
62 PRK15079 oligopeptide ABC tran 100.0 4.5E-49 9.8E-54 338.5 20.3 209 1-211 11-251 (331)
63 cd03266 ABC_NatA_sodium_export 100.0 3.3E-49 7.1E-54 320.8 18.2 200 1-204 4-218 (218)
64 PRK10070 glycine betaine trans 100.0 5.9E-49 1.3E-53 344.3 20.6 202 5-210 35-253 (400)
65 cd03226 ABC_cobalt_CbiO_domain 100.0 2.8E-49 6.1E-54 318.7 17.1 192 1-200 2-204 (205)
66 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.5E-49 1.2E-53 323.4 19.0 206 1-210 4-220 (236)
67 COG3840 ThiQ ABC-type thiamine 100.0 1.6E-49 3.5E-54 307.0 14.8 204 1-210 4-218 (231)
68 COG4152 ABC-type uncharacteriz 100.0 2.7E-49 5.9E-54 318.0 16.5 206 1-211 5-219 (300)
69 TIGR00972 3a0107s01c2 phosphat 100.0 9.7E-49 2.1E-53 324.0 19.1 206 1-210 4-231 (247)
70 PRK13647 cbiO cobalt transport 100.0 7.7E-49 1.7E-53 329.4 18.5 206 1-210 7-226 (274)
71 COG0410 LivF ABC-type branched 100.0 4.1E-49 8.8E-54 315.3 15.9 206 1-211 6-226 (237)
72 COG4175 ProV ABC-type proline/ 100.0 9E-50 2E-54 330.9 12.5 196 11-210 41-253 (386)
73 PRK10895 lipopolysaccharide AB 100.0 1.1E-48 2.4E-53 322.4 18.9 207 1-210 6-225 (241)
74 PRK13651 cobalt transporter AT 100.0 7.2E-49 1.6E-53 334.0 18.2 207 1-211 5-254 (305)
75 PRK13634 cbiO cobalt transport 100.0 8.6E-49 1.9E-53 331.6 18.5 205 1-210 5-234 (290)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 7.6E-49 1.7E-53 316.7 17.0 196 1-204 3-208 (208)
77 COG4598 HisP ABC-type histidin 100.0 1.2E-49 2.6E-54 307.6 11.6 207 1-210 9-240 (256)
78 cd03264 ABC_drug_resistance_li 100.0 7.9E-49 1.7E-53 317.2 16.9 199 1-204 3-211 (211)
79 TIGR02673 FtsE cell division A 100.0 1.9E-48 4.1E-53 315.5 19.0 194 1-198 4-213 (214)
80 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-48 3.2E-53 317.6 18.2 196 1-200 4-219 (221)
81 PRK13641 cbiO cobalt transport 100.0 1.8E-48 3.9E-53 329.2 19.0 206 1-210 5-233 (287)
82 PRK13650 cbiO cobalt transport 100.0 1E-48 2.2E-53 329.5 17.4 206 1-210 7-228 (279)
83 PRK10619 histidine/lysine/argi 100.0 3.2E-48 6.9E-53 322.7 19.9 207 1-210 8-240 (257)
84 PRK13643 cbiO cobalt transport 100.0 2E-48 4.3E-53 329.1 18.9 206 1-211 4-233 (288)
85 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-48 4.6E-53 338.8 19.5 204 3-210 29-253 (382)
86 TIGR03411 urea_trans_UrtD urea 100.0 2.9E-48 6.3E-53 320.0 19.3 209 1-210 5-230 (242)
87 TIGR03005 ectoine_ehuA ectoine 100.0 3.3E-48 7.1E-53 321.7 19.6 208 1-211 3-236 (252)
88 PRK11308 dppF dipeptide transp 100.0 3.4E-48 7.4E-53 332.7 20.2 208 1-211 8-244 (327)
89 cd03292 ABC_FtsE_transporter F 100.0 3E-48 6.6E-53 314.2 18.7 195 1-199 3-213 (214)
90 PRK10908 cell division protein 100.0 2.9E-48 6.3E-53 316.3 18.6 197 1-201 4-216 (222)
91 PRK11022 dppD dipeptide transp 100.0 4.8E-48 1E-52 331.7 20.7 209 1-211 6-243 (326)
92 cd03225 ABC_cobalt_CbiO_domain 100.0 3E-48 6.6E-53 313.7 18.3 187 1-191 2-200 (211)
93 PRK11124 artP arginine transpo 100.0 3.4E-48 7.4E-53 319.7 18.7 206 1-210 5-229 (242)
94 PRK13646 cbiO cobalt transport 100.0 2.8E-48 6E-53 327.9 18.4 205 1-210 5-234 (286)
95 TIGR02142 modC_ABC molybdenum 100.0 4.2E-48 9.1E-53 335.6 19.9 201 3-211 4-221 (354)
96 PRK11300 livG leucine/isoleuci 100.0 4.3E-48 9.4E-53 321.3 19.1 209 1-210 8-242 (255)
97 PRK13644 cbiO cobalt transport 100.0 2.1E-48 4.4E-53 326.8 17.4 206 1-210 4-223 (274)
98 cd03262 ABC_HisP_GlnQ_permease 100.0 3.2E-48 7E-53 313.8 17.8 196 1-199 3-212 (213)
99 PRK13636 cbiO cobalt transport 100.0 4.4E-48 9.4E-53 326.2 18.8 207 1-211 8-231 (283)
100 PRK11248 tauB taurine transpor 100.0 6.8E-48 1.5E-52 320.6 19.6 200 1-206 4-215 (255)
101 PRK13635 cbiO cobalt transport 100.0 2.6E-48 5.7E-53 327.0 17.2 206 1-210 8-228 (279)
102 cd03235 ABC_Metallic_Cations A 100.0 3.1E-48 6.8E-53 314.2 17.0 200 1-204 2-213 (213)
103 PRK13638 cbiO cobalt transport 100.0 6.8E-48 1.5E-52 323.1 18.4 206 1-210 4-224 (271)
104 PRK11614 livF leucine/isoleuci 100.0 6.4E-48 1.4E-52 317.2 17.8 205 1-211 8-226 (237)
105 PRK11247 ssuB aliphatic sulfon 100.0 5.6E-48 1.2E-52 321.4 17.5 195 1-207 15-219 (257)
106 TIGR03410 urea_trans_UrtE urea 100.0 5.4E-48 1.2E-52 316.2 17.1 203 1-210 3-220 (230)
107 PRK13652 cbiO cobalt transport 100.0 1.2E-47 2.5E-52 322.7 19.6 206 1-210 6-226 (277)
108 PRK13631 cbiO cobalt transport 100.0 8.3E-48 1.8E-52 329.4 18.9 205 1-210 24-264 (320)
109 PRK11144 modC molybdate transp 100.0 9.1E-48 2E-52 333.2 19.4 197 3-211 5-218 (352)
110 PRK11231 fecE iron-dicitrate t 100.0 6.9E-48 1.5E-52 320.4 17.8 209 1-210 5-226 (255)
111 PRK14247 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 317.8 19.2 209 1-210 6-233 (250)
112 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-47 2.9E-52 313.1 18.9 201 1-204 4-228 (228)
113 PRK10584 putative ABC transpor 100.0 1.2E-47 2.7E-52 313.7 18.7 198 1-202 9-226 (228)
114 TIGR02769 nickel_nikE nickel i 100.0 1.9E-47 4.1E-52 319.5 20.0 207 1-210 5-239 (265)
115 PRK10575 iron-hydroxamate tran 100.0 7.3E-48 1.6E-52 322.0 17.4 209 1-210 14-236 (265)
116 TIGR01978 sufC FeS assembly AT 100.0 2.1E-47 4.6E-52 314.8 19.8 209 1-210 3-233 (243)
117 PRK13548 hmuV hemin importer A 100.0 1.2E-47 2.6E-52 319.6 18.4 206 1-210 5-229 (258)
118 PRK14267 phosphate ABC transpo 100.0 1.6E-47 3.4E-52 317.7 18.8 209 1-210 7-236 (253)
119 PRK14268 phosphate ABC transpo 100.0 1.8E-47 3.9E-52 318.4 19.2 206 1-210 15-241 (258)
120 PRK09473 oppD oligopeptide tra 100.0 2.3E-47 4.9E-52 327.9 20.3 209 1-211 15-251 (330)
121 PRK13632 cbiO cobalt transport 100.0 1.1E-47 2.4E-52 321.9 17.5 206 1-210 10-230 (271)
122 PRK13649 cbiO cobalt transport 100.0 2E-47 4.3E-52 321.6 19.1 205 1-210 5-233 (280)
123 PRK14273 phosphate ABC transpo 100.0 1.8E-47 3.8E-52 317.6 18.4 207 1-210 10-237 (254)
124 TIGR03873 F420-0_ABC_ATP propo 100.0 1.7E-47 3.7E-52 318.2 18.2 209 1-210 4-225 (256)
125 TIGR03608 L_ocin_972_ABC putat 100.0 4.9E-47 1.1E-51 305.5 20.2 184 1-188 1-197 (206)
126 PRK14242 phosphate transporter 100.0 2.8E-47 6E-52 316.2 19.1 206 1-210 9-236 (253)
127 PRK15093 antimicrobial peptide 100.0 2.7E-47 5.9E-52 327.7 19.7 210 1-210 6-247 (330)
128 PRK10253 iron-enterobactin tra 100.0 1.1E-47 2.5E-52 320.8 16.6 209 1-210 10-232 (265)
129 PRK13639 cbiO cobalt transport 100.0 2.3E-47 5.1E-52 320.6 18.5 206 1-210 4-225 (275)
130 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.5E-47 5.4E-52 308.5 17.8 197 1-203 3-210 (211)
131 PRK13640 cbiO cobalt transport 100.0 1.5E-47 3.3E-52 322.8 17.2 206 1-210 8-231 (282)
132 TIGR03740 galliderm_ABC gallid 100.0 3.7E-47 8.1E-52 310.0 19.0 199 1-208 3-210 (223)
133 PRK09984 phosphonate/organopho 100.0 1.9E-47 4.1E-52 318.9 17.5 210 1-210 7-241 (262)
134 COG0444 DppD ABC-type dipeptid 100.0 2.4E-47 5.2E-52 318.8 18.0 210 1-211 4-243 (316)
135 PRK13633 cobalt transporter AT 100.0 1.8E-47 4E-52 322.0 17.4 206 1-210 7-232 (280)
136 PRK14250 phosphate ABC transpo 100.0 2.2E-47 4.7E-52 315.0 17.3 201 1-210 6-220 (241)
137 PRK10744 pstB phosphate transp 100.0 3.6E-47 7.9E-52 316.9 18.7 207 1-210 16-243 (260)
138 PRK13549 xylose transporter AT 100.0 1.7E-47 3.8E-52 345.7 18.1 209 1-209 8-230 (506)
139 PRK13645 cbiO cobalt transport 100.0 3.9E-47 8.5E-52 321.3 18.9 206 1-210 9-239 (289)
140 PRK10762 D-ribose transporter 100.0 1.5E-47 3.3E-52 345.8 17.4 209 1-210 7-229 (501)
141 PRK14241 phosphate transporter 100.0 5.4E-47 1.2E-51 315.5 19.4 208 1-210 7-241 (258)
142 PRK15112 antimicrobial peptide 100.0 5.9E-47 1.3E-51 316.9 19.7 208 1-211 7-239 (267)
143 cd03300 ABC_PotA_N PotA is an 100.0 8.7E-47 1.9E-51 309.7 20.0 207 1-211 3-220 (232)
144 COG4604 CeuD ABC-type enteroch 100.0 1.6E-48 3.4E-53 305.0 8.5 209 1-211 4-225 (252)
145 PRK14235 phosphate transporter 100.0 9.6E-47 2.1E-51 315.6 19.6 208 1-210 22-250 (267)
146 PRK14256 phosphate ABC transpo 100.0 1.1E-46 2.5E-51 312.4 19.9 208 1-210 7-235 (252)
147 PRK13642 cbiO cobalt transport 100.0 4.9E-47 1.1E-51 318.9 17.8 206 1-210 7-228 (277)
148 PRK14269 phosphate ABC transpo 100.0 8.8E-47 1.9E-51 312.2 19.0 207 1-210 5-229 (246)
149 PRK13648 cbiO cobalt transport 100.0 4E-47 8.7E-52 318.2 17.2 207 1-211 10-231 (269)
150 cd03297 ABC_ModC_molybdenum_tr 100.0 9.8E-47 2.1E-51 305.7 18.9 193 3-204 5-214 (214)
151 PRK11701 phnK phosphonate C-P 100.0 1.3E-46 2.7E-51 313.3 19.8 208 1-211 9-241 (258)
152 PRK09700 D-allose transporter 100.0 4.1E-47 8.9E-52 343.6 18.0 208 1-209 8-232 (510)
153 cd03234 ABCG_White The White s 100.0 1.1E-46 2.5E-51 307.8 18.6 203 1-204 6-226 (226)
154 TIGR00968 3a0106s01 sulfate AB 100.0 1.7E-46 3.7E-51 309.0 19.7 207 1-211 3-220 (237)
155 cd03299 ABC_ModC_like Archeal 100.0 2E-46 4.4E-51 308.2 20.1 205 1-210 3-218 (235)
156 TIGR01277 thiQ thiamine ABC tr 100.0 1.6E-46 3.4E-51 304.4 19.0 199 1-205 3-212 (213)
157 PRK10771 thiQ thiamine transpo 100.0 7.4E-47 1.6E-51 310.0 17.3 204 1-210 4-218 (232)
158 COG1123 ATPase components of v 100.0 5E-47 1.1E-51 336.9 17.4 207 2-211 284-519 (539)
159 COG4525 TauB ABC-type taurine 100.0 8.6E-47 1.9E-51 294.9 16.6 200 2-207 7-220 (259)
160 PRK10982 galactose/methyl gala 100.0 1E-46 2.3E-51 339.6 19.1 208 1-209 1-221 (491)
161 PRK14274 phosphate ABC transpo 100.0 1.8E-46 3.9E-51 312.5 19.0 207 1-210 15-242 (259)
162 PRK14245 phosphate ABC transpo 100.0 2E-46 4.3E-51 310.6 18.7 207 1-210 6-233 (250)
163 PRK14240 phosphate transporter 100.0 2.3E-46 4.9E-51 310.2 19.0 207 1-210 6-233 (250)
164 TIGR01166 cbiO cobalt transpor 100.0 3.2E-46 7E-51 297.5 19.0 176 8-187 2-189 (190)
165 PRK14248 phosphate ABC transpo 100.0 2.3E-46 5E-51 313.3 18.7 206 1-210 24-251 (268)
166 PRK15439 autoinducer 2 ABC tra 100.0 9.8E-47 2.1E-51 341.1 17.7 202 1-210 14-228 (510)
167 PRK14270 phosphate ABC transpo 100.0 3.1E-46 6.7E-51 309.7 19.2 207 1-210 7-234 (251)
168 PRK14239 phosphate transporter 100.0 2.8E-46 6.2E-51 309.9 18.9 207 1-210 8-235 (252)
169 PRK14244 phosphate ABC transpo 100.0 3E-46 6.5E-51 309.8 18.9 209 1-211 8-237 (251)
170 COG4559 ABC-type hemin transpo 100.0 6.5E-47 1.4E-51 298.8 14.1 207 2-210 5-229 (259)
171 PRK14251 phosphate ABC transpo 100.0 3.8E-46 8.2E-51 309.1 19.2 207 1-210 7-234 (251)
172 PRK13538 cytochrome c biogenes 100.0 3.7E-46 8.1E-51 300.4 18.6 183 1-190 4-194 (204)
173 PRK14254 phosphate ABC transpo 100.0 4.2E-46 9.1E-51 314.5 19.6 205 1-210 42-268 (285)
174 PRK14262 phosphate ABC transpo 100.0 3.8E-46 8.3E-51 308.9 18.9 208 1-211 6-234 (250)
175 PRK10261 glutathione transport 100.0 3.5E-46 7.6E-51 344.4 20.6 207 1-210 316-552 (623)
176 PRK13547 hmuV hemin importer A 100.0 1.8E-46 3.8E-51 314.8 16.9 208 1-209 4-242 (272)
177 PRK14272 phosphate ABC transpo 100.0 4.7E-46 1E-50 308.6 18.9 208 1-210 7-235 (252)
178 COG4181 Predicted ABC-type tra 100.0 2.7E-46 5.8E-51 286.7 16.0 198 2-203 10-227 (228)
179 PRK14260 phosphate ABC transpo 100.0 5.7E-46 1.2E-50 309.6 19.3 207 1-210 10-242 (259)
180 PRK14259 phosphate ABC transpo 100.0 2.8E-46 6E-51 313.2 17.5 205 1-210 16-252 (269)
181 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-47 1.1E-51 311.1 12.5 209 1-211 3-225 (234)
182 PRK14271 phosphate ABC transpo 100.0 5.9E-46 1.3E-50 312.2 19.1 208 1-211 24-251 (276)
183 PRK14237 phosphate transporter 100.0 7E-46 1.5E-50 310.4 19.2 207 1-210 23-250 (267)
184 cd03252 ABCC_Hemolysin The ABC 100.0 4.6E-47 9.9E-52 312.0 11.8 209 1-211 3-225 (237)
185 cd03267 ABC_NatA_like Similar 100.0 1E-45 2.3E-50 304.2 19.9 195 6-204 29-236 (236)
186 PRK14275 phosphate ABC transpo 100.0 6.4E-46 1.4E-50 313.5 18.9 207 1-210 42-269 (286)
187 PRK14249 phosphate ABC transpo 100.0 8.2E-46 1.8E-50 307.2 19.0 208 1-211 7-235 (251)
188 TIGR01184 ntrCD nitrate transp 100.0 1.1E-45 2.4E-50 302.9 19.4 192 14-209 1-202 (230)
189 PRK14253 phosphate ABC transpo 100.0 7.3E-46 1.6E-50 307.0 18.5 207 1-210 6-232 (249)
190 PRK10261 glutathione transport 100.0 8.2E-46 1.8E-50 341.9 20.2 207 1-210 15-257 (623)
191 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-45 2.4E-50 306.7 18.8 207 1-210 6-237 (253)
192 PRK10418 nikD nickel transport 100.0 1.4E-45 3.1E-50 306.4 19.5 205 1-211 7-230 (254)
193 PRK14261 phosphate ABC transpo 100.0 1.4E-45 3.1E-50 306.1 19.2 207 1-210 9-236 (253)
194 PRK14236 phosphate transporter 100.0 1.4E-45 3.1E-50 309.2 19.2 208 1-211 28-256 (272)
195 TIGR02633 xylG D-xylose ABC tr 100.0 8.8E-46 1.9E-50 334.2 19.2 209 1-209 4-228 (500)
196 PRK13543 cytochrome c biogenes 100.0 2.7E-45 5.9E-50 297.5 20.1 184 1-191 14-203 (214)
197 PRK10419 nikE nickel transport 100.0 1.7E-45 3.6E-50 308.3 19.3 207 1-210 6-240 (268)
198 TIGR02982 heterocyst_DevA ABC 100.0 8.9E-46 1.9E-50 301.4 17.2 197 1-200 4-219 (220)
199 PRK10247 putative ABC transpor 100.0 6.2E-46 1.4E-50 303.4 16.3 198 1-205 10-221 (225)
200 PRK14238 phosphate transporter 100.0 1.2E-45 2.6E-50 309.6 18.4 206 1-210 27-254 (271)
201 COG1123 ATPase components of v 100.0 9.4E-46 2E-50 328.8 18.5 209 1-211 8-244 (539)
202 PRK11288 araG L-arabinose tran 100.0 9E-46 2E-50 334.2 18.6 204 1-205 7-223 (501)
203 PRK15056 manganese/iron transp 100.0 8.5E-46 1.8E-50 310.6 17.1 209 1-210 9-229 (272)
204 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-45 2.6E-50 334.7 19.3 206 1-210 3-257 (520)
205 PRK13539 cytochrome c biogenes 100.0 2.2E-45 4.7E-50 296.7 18.5 182 1-190 5-192 (207)
206 COG2274 SunT ABC-type bacterio 100.0 1E-46 2.2E-51 348.6 12.0 209 1-211 474-696 (709)
207 PRK14255 phosphate ABC transpo 100.0 2.7E-45 5.9E-50 304.1 19.2 207 1-210 8-235 (252)
208 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-45 4.2E-50 295.7 17.7 180 1-190 3-190 (201)
209 COG4161 ArtP ABC-type arginine 100.0 4.6E-46 9.9E-51 283.5 13.1 205 1-208 5-227 (242)
210 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-46 3.8E-51 306.9 11.6 204 1-211 5-226 (229)
211 PRK15134 microcin C ABC transp 100.0 2.4E-45 5.2E-50 333.4 19.9 207 1-210 278-514 (529)
212 PRK11174 cysteine/glutathione 100.0 2.9E-46 6.2E-51 343.1 13.9 202 2-211 353-572 (588)
213 PRK14258 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 304.3 20.1 208 1-211 10-245 (261)
214 PRK14243 phosphate transporter 100.0 1.8E-45 3.9E-50 307.4 17.5 205 1-210 13-247 (264)
215 TIGR02770 nickel_nikD nickel i 100.0 3.5E-45 7.6E-50 299.8 18.8 195 13-210 1-214 (230)
216 TIGR01189 ccmA heme ABC export 100.0 4E-45 8.7E-50 293.0 18.8 179 1-187 3-189 (198)
217 PRK13540 cytochrome c biogenes 100.0 2E-45 4.4E-50 295.3 17.0 182 1-191 4-193 (200)
218 COG1129 MglA ABC-type sugar tr 100.0 1.1E-45 2.3E-50 326.4 16.6 208 1-209 11-233 (500)
219 PRK14246 phosphate ABC transpo 100.0 3.7E-45 8.1E-50 304.5 18.6 207 1-210 13-240 (257)
220 PRK14266 phosphate ABC transpo 100.0 4.3E-45 9.4E-50 302.6 18.6 207 1-210 6-233 (250)
221 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-45 5.6E-50 332.6 18.5 206 1-211 282-517 (520)
222 PRK14265 phosphate ABC transpo 100.0 5.6E-45 1.2E-49 306.0 18.6 205 1-210 23-257 (274)
223 PRK13549 xylose transporter AT 100.0 3.5E-45 7.5E-50 330.8 18.5 209 1-209 262-492 (506)
224 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.8E-45 1.7E-49 296.8 18.8 191 1-204 25-224 (224)
225 PLN03211 ABC transporter G-25; 100.0 7E-45 1.5E-49 336.6 20.7 209 2-211 72-296 (659)
226 PRK15134 microcin C ABC transp 100.0 6.6E-45 1.4E-49 330.5 19.7 207 1-209 8-244 (529)
227 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.6E-46 1.4E-50 305.3 11.8 202 1-210 3-225 (238)
228 CHL00131 ycf16 sulfate ABC tra 100.0 1.3E-44 2.9E-49 299.8 19.3 208 1-209 10-239 (252)
229 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-45 2.5E-50 300.4 12.5 193 1-204 5-220 (220)
230 PRK14263 phosphate ABC transpo 100.0 1.5E-44 3.2E-49 301.5 19.3 204 2-210 12-244 (261)
231 PRK14264 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 307.7 19.8 209 1-210 48-288 (305)
232 TIGR02324 CP_lyasePhnL phospho 100.0 2.6E-44 5.7E-49 293.3 20.2 186 1-190 4-214 (224)
233 PRK03695 vitamin B12-transport 100.0 9.9E-45 2.1E-49 300.4 17.5 200 1-210 3-221 (248)
234 PRK14257 phosphate ABC transpo 100.0 1.5E-44 3.3E-49 310.2 19.0 206 1-210 83-312 (329)
235 cd03253 ABCC_ATM1_transporter 100.0 1.6E-45 3.6E-50 302.5 12.3 203 1-210 3-223 (236)
236 COG3845 ABC-type uncharacteriz 100.0 4.6E-45 1E-49 317.7 15.2 204 1-205 7-223 (501)
237 TIGR02633 xylG D-xylose ABC tr 100.0 8.8E-45 1.9E-49 327.7 17.2 209 1-209 260-490 (500)
238 TIGR01257 rim_protein retinal- 100.0 9.5E-45 2E-49 361.3 18.7 207 1-211 1940-2159(2272)
239 KOG0058|consensus 100.0 1.4E-45 3E-50 332.9 11.5 208 2-211 469-691 (716)
240 PRK09544 znuC high-affinity zi 100.0 2.3E-44 5.1E-49 298.7 17.4 190 1-210 7-208 (251)
241 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.7E-45 1.2E-49 305.8 13.6 198 1-211 5-225 (275)
242 PRK10938 putative molybdenum t 100.0 5.6E-45 1.2E-49 328.2 14.5 198 1-210 6-223 (490)
243 PRK09700 D-allose transporter 100.0 1.6E-44 3.4E-49 326.8 17.4 203 1-206 268-493 (510)
244 PRK09580 sufC cysteine desulfu 100.0 3E-44 6.6E-49 297.0 17.5 209 1-210 4-234 (248)
245 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2E-45 4.4E-50 342.9 11.7 199 1-211 454-673 (686)
246 PRK14252 phosphate ABC transpo 100.0 3.6E-44 7.7E-49 299.7 17.9 206 1-210 19-248 (265)
247 cd03248 ABCC_TAP TAP, the Tran 100.0 2.6E-45 5.6E-50 299.6 10.2 197 1-199 14-225 (226)
248 cd03233 ABC_PDR_domain1 The pl 100.0 4.4E-44 9.6E-49 288.1 16.9 177 1-204 6-202 (202)
249 TIGR01257 rim_protein retinal- 100.0 2.5E-44 5.4E-49 358.3 18.9 207 1-211 931-1149(2272)
250 COG1132 MdlB ABC-type multidru 100.0 3.5E-45 7.5E-50 334.8 11.6 208 2-211 332-552 (567)
251 cd03244 ABCC_MRP_domain2 Domai 100.0 9.4E-45 2E-49 295.2 12.7 193 1-205 5-220 (221)
252 COG4674 Uncharacterized ABC-ty 100.0 2.8E-45 6.2E-50 286.2 9.1 210 1-211 8-235 (249)
253 PRK10790 putative multidrug tr 100.0 6.7E-45 1.4E-49 334.4 13.0 198 2-211 344-563 (592)
254 PRK13541 cytochrome c biogenes 100.0 6.8E-44 1.5E-48 285.4 17.0 180 1-191 4-189 (195)
255 COG4988 CydD ABC-type transpor 100.0 6.5E-45 1.4E-49 322.7 11.9 199 2-211 324-543 (559)
256 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.8E-45 8.3E-50 342.2 10.8 200 1-211 480-700 (710)
257 COG4172 ABC-type uncharacteriz 100.0 6.9E-44 1.5E-48 303.8 17.1 198 11-211 300-516 (534)
258 PRK11176 lipid transporter ATP 100.0 6.5E-45 1.4E-49 333.7 11.6 201 1-211 344-567 (582)
259 COG4148 ModC ABC-type molybdat 100.0 1.8E-44 3.9E-49 295.0 12.8 195 4-210 6-217 (352)
260 cd03230 ABC_DR_subfamily_A Thi 100.0 9.5E-44 2.1E-48 279.6 15.4 159 1-199 3-172 (173)
261 cd03213 ABCG_EPDR ABCG transpo 100.0 9.6E-44 2.1E-48 284.4 15.4 170 1-203 6-193 (194)
262 TIGR03375 type_I_sec_LssB type 100.0 1.4E-44 3E-49 337.6 11.8 200 1-211 466-688 (694)
263 PRK11160 cysteine/glutathione 100.0 3.2E-44 6.9E-49 328.8 13.3 200 1-211 341-562 (574)
264 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-44 3.3E-49 338.0 11.2 201 1-211 476-697 (708)
265 PRK10762 D-ribose transporter 100.0 2.2E-43 4.8E-48 318.7 18.4 197 12-209 266-482 (501)
266 cd03288 ABCC_SUR2 The SUR doma 100.0 2.6E-44 5.7E-49 299.3 11.3 208 1-211 22-243 (257)
267 TIGR01842 type_I_sec_PrtD type 100.0 6.5E-44 1.4E-48 325.0 13.3 204 1-211 319-542 (544)
268 PRK11288 araG L-arabinose tran 100.0 1.4E-43 3E-48 319.9 15.3 198 12-210 267-484 (501)
269 cd03229 ABC_Class3 This class 100.0 1.9E-43 4.2E-48 279.0 14.2 152 1-190 3-166 (178)
270 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.1E-43 2.5E-48 286.4 13.2 187 1-206 9-207 (207)
271 PRK13657 cyclic beta-1,2-gluca 100.0 5.6E-44 1.2E-48 328.1 12.8 199 1-210 337-557 (588)
272 COG4619 ABC-type uncharacteriz 100.0 3.2E-44 7E-49 274.4 9.3 182 3-191 8-200 (223)
273 TIGR00958 3a01208 Conjugate Tr 100.0 3.1E-44 6.7E-49 335.9 10.7 198 1-211 481-702 (711)
274 TIGR00955 3a01204 The Eye Pigm 100.0 6.4E-43 1.4E-47 322.4 18.7 202 9-210 36-255 (617)
275 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-43 1E-47 317.2 17.4 197 13-210 278-491 (510)
276 KOG0055|consensus 100.0 3.8E-44 8.3E-49 338.9 10.2 208 2-211 354-576 (1228)
277 cd03232 ABC_PDR_domain2 The pl 100.0 5.2E-43 1.1E-47 279.7 15.2 170 1-204 6-192 (192)
278 cd03247 ABCC_cytochrome_bd The 100.0 1.5E-43 3.3E-48 279.5 11.4 165 1-204 3-178 (178)
279 TIGR01846 type_I_sec_HlyB type 100.0 9.4E-44 2E-48 332.1 11.8 204 1-211 458-680 (694)
280 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-42 2.4E-47 283.9 16.5 189 19-211 1-201 (223)
281 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-43 2.6E-48 324.6 11.8 199 2-210 334-555 (571)
282 PRK13546 teichoic acids export 100.0 4.8E-42 1E-46 286.7 20.1 188 10-211 36-232 (264)
283 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-43 3.1E-48 324.5 11.6 200 1-211 340-563 (576)
284 TIGR01192 chvA glucan exporter 100.0 1.9E-43 4.2E-48 324.3 12.4 204 1-211 337-558 (585)
285 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.4E-43 1.8E-47 280.2 14.6 172 1-207 3-190 (200)
286 cd03215 ABC_Carb_Monos_II This 100.0 1.9E-42 4.1E-47 274.2 16.2 159 1-199 7-181 (182)
287 TIGR01187 potA spermidine/putr 100.0 1.8E-42 3.9E-47 297.2 17.2 179 29-211 1-190 (325)
288 cd03214 ABC_Iron-Siderophores_ 100.0 3.4E-43 7.3E-48 278.1 11.6 165 1-203 2-179 (180)
289 PRK13545 tagH teichoic acids e 100.0 3E-42 6.4E-47 307.4 18.8 196 2-211 25-232 (549)
290 TIGR02868 CydC thiol reductant 100.0 2.7E-43 5.9E-48 319.8 12.3 168 1-179 337-519 (529)
291 COG4608 AppF ABC-type oligopep 100.0 9.5E-43 2.1E-47 285.6 14.1 172 2-211 8-199 (268)
292 cd03246 ABCC_Protease_Secretio 100.0 7.7E-43 1.7E-47 274.4 13.1 157 1-199 3-172 (173)
293 PRK11819 putative ABC transpor 100.0 9.5E-43 2.1E-47 318.0 15.7 199 1-209 9-248 (556)
294 PRK15064 ABC transporter ATP-b 100.0 1.1E-42 2.5E-47 316.0 15.8 201 1-210 4-241 (530)
295 PRK10789 putative multidrug tr 100.0 2.7E-43 5.8E-48 322.5 11.4 199 2-211 317-538 (569)
296 COG1119 ModF ABC-type molybden 100.0 1.7E-43 3.8E-48 285.1 8.9 204 1-205 34-256 (257)
297 PRK10535 macrolide transporter 100.0 5.7E-42 1.2E-46 317.5 19.2 206 1-210 7-231 (648)
298 KOG0057|consensus 100.0 2.2E-43 4.8E-48 309.9 9.2 197 2-210 355-573 (591)
299 PRK10938 putative molybdenum t 100.0 1.9E-42 4E-47 311.8 15.1 204 1-205 263-486 (490)
300 cd03290 ABCC_SUR1_N The SUR do 100.0 3.8E-42 8.2E-47 279.6 15.4 177 2-190 4-207 (218)
301 PRK15064 ABC transporter ATP-b 100.0 2.3E-42 5.1E-47 313.9 15.2 194 1-211 322-525 (530)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-42 7.2E-47 314.3 16.0 200 1-210 7-247 (552)
303 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-42 3.3E-47 279.2 12.2 172 1-190 3-193 (204)
304 cd03228 ABCC_MRP_Like The MRP 100.0 3.6E-42 7.9E-47 270.1 12.2 148 1-190 3-160 (171)
305 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-41 4E-46 334.2 18.3 205 2-208 763-990 (1394)
306 PRK10982 galactose/methyl gala 100.0 1.9E-41 4.1E-46 305.4 16.9 203 2-207 254-476 (491)
307 COG4172 ABC-type uncharacteriz 100.0 2.2E-41 4.8E-46 288.5 16.2 208 1-210 9-246 (534)
308 PTZ00265 multidrug resistance 100.0 2.2E-42 4.9E-47 341.4 11.6 201 1-211 1168-1452(1466)
309 TIGR02857 CydD thiol reductant 100.0 3E-42 6.6E-47 313.0 11.3 180 1-191 323-523 (529)
310 KOG0061|consensus 100.0 1E-40 2.2E-45 306.4 21.2 201 10-210 42-259 (613)
311 PRK15177 Vi polysaccharide exp 100.0 6.2E-41 1.3E-45 271.9 16.3 182 12-210 1-191 (213)
312 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.2E-40 2.5E-45 275.8 18.1 164 11-191 7-182 (246)
313 KOG0055|consensus 100.0 4E-42 8.7E-47 325.2 10.2 209 1-211 990-1213(1228)
314 PLN03232 ABC transporter C fam 100.0 4.6E-42 9.9E-47 340.8 10.7 199 1-211 1237-1458(1495)
315 PRK11819 putative ABC transpor 100.0 4.3E-41 9.4E-46 307.1 15.7 196 1-210 327-532 (556)
316 cd03216 ABC_Carb_Monos_I This 100.0 4.3E-41 9.3E-46 262.2 13.3 147 1-202 3-162 (163)
317 PLN03130 ABC transporter C fam 100.0 1E-41 2.2E-46 339.3 11.9 199 1-211 1240-1461(1622)
318 COG4987 CydC ABC-type transpor 100.0 4.1E-42 8.9E-47 301.6 7.8 200 1-211 339-561 (573)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.5E-41 1.6E-45 281.8 15.0 186 2-211 43-247 (282)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.5E-41 1.4E-45 305.8 15.6 195 1-209 325-529 (552)
321 PLN03140 ABC transporter G fam 100.0 1.6E-40 3.6E-45 327.4 19.0 199 9-207 891-1106(1470)
322 cd03223 ABCD_peroxisomal_ALDP 100.0 1.5E-40 3.2E-45 259.9 15.0 146 1-189 3-152 (166)
323 COG1101 PhnK ABC-type uncharac 100.0 7.6E-41 1.6E-45 264.9 11.8 203 2-205 5-232 (263)
324 TIGR00957 MRP_assoc_pro multi 100.0 3.7E-41 8.1E-46 334.8 11.5 199 1-211 1287-1508(1522)
325 PRK13409 putative ATPase RIL; 100.0 4E-40 8.6E-45 301.7 17.2 184 1-205 343-536 (590)
326 PTZ00243 ABC transporter; Prov 100.0 7.7E-41 1.7E-45 332.4 13.5 198 1-210 1311-1532(1560)
327 COG4586 ABC-type uncharacteriz 100.0 1E-40 2.2E-45 272.1 11.7 199 10-212 36-247 (325)
328 COG4136 ABC-type uncharacteriz 100.0 1.8E-40 4E-45 249.8 11.7 185 1-189 5-199 (213)
329 COG4167 SapF ABC-type antimicr 100.0 7E-40 1.5E-44 254.1 14.9 206 2-210 8-238 (267)
330 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.8E-40 1.3E-44 272.9 14.4 191 2-204 4-220 (255)
331 PRK10636 putative ABC transpor 100.0 5.9E-40 1.3E-44 303.6 15.5 191 1-209 315-515 (638)
332 PRK10522 multidrug transporter 100.0 4.5E-40 9.8E-45 299.9 13.7 188 1-203 325-530 (547)
333 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-39 5.5E-44 319.1 19.0 200 10-210 73-299 (1394)
334 PRK10636 putative ABC transpor 100.0 9.4E-40 2E-44 302.2 14.6 198 1-208 4-233 (638)
335 PTZ00265 multidrug resistance 100.0 4.7E-40 1E-44 324.9 13.2 196 1-198 385-655 (1466)
336 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.3E-40 1.6E-44 299.0 13.3 188 2-203 341-551 (555)
337 PRK11147 ABC transporter ATPas 100.0 1.5E-39 3.2E-44 301.0 15.4 188 1-202 322-518 (635)
338 COG4133 CcmA ABC-type transpor 100.0 4.8E-39 1E-43 249.8 14.4 179 1-186 5-191 (209)
339 PLN03140 ABC transporter G fam 100.0 3.8E-39 8.1E-44 317.8 17.1 204 5-210 173-426 (1470)
340 PRK11147 ABC transporter ATPas 100.0 3.2E-39 6.9E-44 298.8 15.4 198 1-209 6-241 (635)
341 TIGR01271 CFTR_protein cystic 100.0 1.5E-39 3.2E-44 322.7 13.8 197 2-211 1221-1440(1490)
342 KOG0059|consensus 100.0 6.2E-39 1.3E-43 305.3 16.2 205 2-210 568-786 (885)
343 COG0396 sufC Cysteine desulfur 100.0 8.3E-39 1.8E-43 255.5 14.1 207 1-210 6-232 (251)
344 PLN03073 ABC transporter F fam 100.0 1.8E-38 3.8E-43 295.9 16.1 194 1-210 511-713 (718)
345 PF00005 ABC_tran: ABC transpo 100.0 1.7E-38 3.6E-43 239.8 11.7 130 14-160 1-137 (137)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.4E-38 7.5E-43 241.1 12.3 128 1-191 3-133 (144)
347 COG4618 ArpD ABC-type protease 100.0 2.2E-38 4.7E-43 276.4 12.3 200 10-211 348-560 (580)
348 TIGR00954 3a01203 Peroxysomal 100.0 2.8E-38 6.1E-43 293.3 13.9 180 1-192 454-646 (659)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 6.7E-38 1.5E-42 246.9 13.7 138 2-201 4-151 (177)
350 COG4107 PhnK ABC-type phosphon 100.0 6.8E-38 1.5E-42 241.3 13.3 201 2-210 10-240 (258)
351 KOG0056|consensus 100.0 1.5E-39 3.3E-44 282.7 4.5 204 2-210 541-760 (790)
352 COG0488 Uup ATPase components 100.0 1.1E-37 2.4E-42 280.5 14.1 195 1-205 6-234 (530)
353 PRK13409 putative ATPase RIL; 100.0 1.5E-37 3.3E-42 284.7 14.8 175 2-191 77-277 (590)
354 COG1134 TagH ABC-type polysacc 100.0 1.5E-36 3.3E-41 245.0 15.8 190 9-211 38-236 (249)
355 PLN03232 ABC transporter C fam 100.0 4.6E-37 1E-41 305.2 13.4 189 1-210 617-827 (1495)
356 TIGR00957 MRP_assoc_pro multi 100.0 7.5E-37 1.6E-41 304.1 13.5 190 2-210 640-849 (1522)
357 PLN03130 ABC transporter C fam 100.0 6.4E-37 1.4E-41 305.1 12.8 188 1-210 617-827 (1622)
358 COG5265 ATM1 ABC-type transpor 100.0 1.1E-37 2.4E-42 266.9 4.8 207 2-210 266-485 (497)
359 cd03238 ABC_UvrA The excision 100.0 4.8E-36 1E-40 236.2 13.6 151 10-202 7-168 (176)
360 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.5E-35 3.3E-40 229.2 15.4 136 1-191 2-146 (157)
361 TIGR01271 CFTR_protein cystic 100.0 4.9E-36 1.1E-40 297.7 16.0 187 11-210 439-635 (1490)
362 COG4778 PhnL ABC-type phosphon 100.0 5.8E-36 1.3E-40 229.6 11.9 184 2-190 8-216 (235)
363 PLN03073 ABC transporter F fam 100.0 9.5E-37 2.1E-41 284.3 6.9 204 1-209 180-429 (718)
364 PTZ00243 ABC transporter; Prov 100.0 1.6E-35 3.4E-40 294.6 15.7 190 8-210 670-869 (1560)
365 KOG0065|consensus 100.0 2.8E-34 6E-39 272.5 12.4 200 9-208 802-1018(1391)
366 KOG0054|consensus 100.0 2.2E-34 4.8E-39 277.6 10.0 199 1-211 1141-1362(1381)
367 cd03270 ABC_UvrA_I The excisio 100.0 3.8E-33 8.2E-38 228.2 14.8 187 6-204 3-226 (226)
368 COG0488 Uup ATPase components 100.0 6.1E-33 1.3E-37 249.9 15.6 174 1-192 324-503 (530)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 1.5E-32 3.2E-37 220.3 8.5 155 11-190 9-181 (197)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.1E-31 4.5E-36 221.6 13.1 187 11-206 8-261 (261)
371 KOG0054|consensus 100.0 1.6E-31 3.5E-36 257.9 14.1 178 12-211 535-731 (1381)
372 COG4138 BtuD ABC-type cobalami 100.0 1.1E-31 2.4E-36 207.0 6.5 189 13-211 14-221 (248)
373 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.5E-30 7.6E-35 212.3 10.3 165 6-178 10-210 (243)
374 cd03273 ABC_SMC2_euk Eukaryoti 100.0 1.4E-30 3E-35 216.1 5.0 166 24-190 25-234 (251)
375 COG1129 MglA ABC-type sugar tr 100.0 5.4E-29 1.2E-33 220.5 15.2 196 13-209 274-488 (500)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.6E-30 3.4E-35 210.8 -2.1 165 6-187 12-192 (212)
377 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.7E-28 8E-33 197.0 10.8 171 15-199 18-210 (213)
378 KOG0927|consensus 99.9 4.5E-28 9.9E-33 213.1 10.1 174 2-192 393-573 (614)
379 cd03240 ABC_Rad50 The catalyti 99.9 5.6E-28 1.2E-32 194.8 9.2 152 15-190 14-188 (204)
380 PRK00635 excinuclease ABC subu 99.9 6.6E-27 1.4E-31 231.1 16.5 198 12-210 609-905 (1809)
381 COG4178 ABC-type uncharacteriz 99.9 3.7E-27 8E-32 212.5 13.1 157 2-175 396-560 (604)
382 COG1245 Predicted ATPase, RNas 99.9 9.6E-27 2.1E-31 201.5 12.9 167 3-189 347-520 (591)
383 KOG0927|consensus 99.9 1.9E-26 4.1E-31 202.9 13.8 203 1-208 78-306 (614)
384 PRK00349 uvrA excinuclease ABC 99.9 1.8E-26 3.8E-31 219.4 14.4 118 85-211 792-927 (943)
385 KOG0062|consensus 99.9 9.7E-27 2.1E-31 203.7 10.0 179 1-196 83-267 (582)
386 COG4615 PvdE ABC-type sideroph 99.9 2.8E-26 6E-31 195.8 8.6 188 1-204 325-530 (546)
387 COG3845 ABC-type uncharacteriz 99.9 3.8E-25 8.2E-30 193.4 15.2 208 2-210 261-491 (501)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2E-25 4.4E-30 179.1 11.7 159 10-192 8-183 (198)
389 KOG0065|consensus 99.9 1.1E-25 2.4E-30 214.3 10.2 200 11-210 128-350 (1391)
390 COG4170 SapD ABC-type antimicr 99.9 6.6E-26 1.4E-30 179.9 7.2 205 2-210 7-247 (330)
391 TIGR00630 uvra excinuclease AB 99.9 1.1E-24 2.3E-29 206.9 14.5 99 111-209 807-923 (924)
392 KOG0066|consensus 99.9 6.2E-24 1.4E-28 183.7 10.4 168 2-188 590-764 (807)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.7E-24 8E-29 177.3 4.5 166 19-192 18-226 (247)
394 KOG0060|consensus 99.9 5.4E-23 1.2E-27 182.4 11.7 176 10-194 447-636 (659)
395 KOG0062|consensus 99.9 3.7E-23 8E-28 181.4 7.7 183 3-201 367-558 (582)
396 COG1245 Predicted ATPase, RNas 99.9 4.8E-23 1E-27 178.7 7.4 154 21-190 97-278 (591)
397 KOG2355|consensus 99.9 2.1E-22 4.5E-27 159.3 9.0 188 2-203 17-229 (291)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 9.1E-22 2E-26 158.1 8.8 139 13-204 16-172 (200)
399 KOG0064|consensus 99.9 5.1E-22 1.1E-26 174.7 7.1 173 10-196 494-680 (728)
400 COG2401 ABC-type ATPase fused 99.8 3.2E-20 6.9E-25 159.8 11.2 159 11-190 396-573 (593)
401 cd03283 ABC_MutS-like MutS-lik 99.8 1.1E-20 2.5E-25 151.7 7.8 135 10-191 13-154 (199)
402 PRK00635 excinuclease ABC subu 99.8 8.9E-20 1.9E-24 181.0 13.4 188 13-211 1505-1796(1809)
403 cd03277 ABC_SMC5_euk Eukaryoti 99.8 9.8E-20 2.1E-24 147.7 10.4 67 124-190 119-197 (213)
404 cd03239 ABC_SMC_head The struc 99.8 8.2E-19 1.8E-23 138.6 12.6 58 132-189 95-162 (178)
405 COG0178 UvrA Excinuclease ATPa 99.8 1.7E-19 3.8E-24 165.4 9.0 119 84-211 783-919 (935)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 9.5E-19 2.1E-23 136.1 10.8 127 14-192 11-148 (162)
407 cd03241 ABC_RecN RecN ATPase i 99.8 2.1E-18 4.5E-23 145.1 12.1 62 131-192 170-240 (276)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.7E-19 5.9E-24 146.0 6.1 144 10-205 16-175 (222)
409 KOG0066|consensus 99.8 3.5E-19 7.6E-24 154.5 6.6 184 1-190 267-474 (807)
410 KOG0063|consensus 99.8 8.9E-18 1.9E-22 145.1 13.6 179 7-207 344-535 (592)
411 cd03282 ABC_MSH4_euk MutS4 hom 99.8 1.9E-18 4E-23 139.3 8.2 134 10-190 15-156 (204)
412 cd03243 ABC_MutS_homologs The 99.7 7.1E-19 1.5E-23 141.4 4.3 147 15-207 20-175 (202)
413 cd03242 ABC_RecF RecF is a rec 99.7 1.8E-16 3.9E-21 133.0 14.7 60 129-188 181-251 (270)
414 PRK00349 uvrA excinuclease ABC 99.7 5.6E-17 1.2E-21 154.8 9.7 128 82-210 434-584 (943)
415 TIGR00630 uvra excinuclease AB 99.7 1.8E-16 3.8E-21 151.2 10.0 127 83-210 433-582 (924)
416 cd00820 PEPCK_HprK Phosphoenol 99.7 2.2E-16 4.8E-21 113.9 6.6 75 11-95 2-79 (107)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.1E-15 2.4E-20 124.3 8.3 148 11-209 18-179 (216)
418 PTZ00132 GTP-binding nuclear p 99.6 1.2E-15 2.6E-20 123.4 8.1 49 130-178 149-205 (215)
419 smart00534 MUTSac ATPase domai 99.6 1.8E-15 3.9E-20 120.1 4.0 69 120-189 50-126 (185)
420 KOG0063|consensus 99.6 6.1E-15 1.3E-19 127.7 7.1 161 22-190 98-278 (592)
421 TIGR01069 mutS2 MutS2 family p 99.6 6.4E-15 1.4E-19 138.9 7.7 126 17-188 314-448 (771)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.5 6.4E-14 1.4E-18 113.7 12.0 125 18-191 21-160 (213)
423 PRK00064 recF recombination pr 99.5 3.6E-13 7.7E-18 117.4 14.9 59 130-188 272-342 (361)
424 TIGR02858 spore_III_AA stage I 99.5 8E-14 1.7E-18 116.7 9.0 64 25-90 112-179 (270)
425 PF02463 SMC_N: RecF/RecN/SMC 99.5 9.5E-15 2.1E-19 118.6 1.6 75 110-190 121-204 (220)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 3.2E-12 6.8E-17 104.3 12.8 47 11-58 18-65 (222)
427 PRK00409 recombination and DNA 99.3 8.4E-12 1.8E-16 118.1 10.3 129 16-190 318-455 (782)
428 TIGR03238 dnd_assoc_3 dnd syst 99.3 1.9E-12 4.1E-17 114.8 5.3 51 12-65 20-71 (504)
429 PRK08533 flagellar accessory p 99.2 1.2E-10 2.5E-15 95.7 11.7 130 20-186 20-163 (230)
430 PF13304 AAA_21: AAA domain; P 99.2 1.5E-11 3.2E-16 99.4 5.7 58 129-186 234-300 (303)
431 cd01128 rho_factor Transcripti 99.2 1E-10 2.3E-15 96.9 10.1 167 19-200 11-211 (249)
432 cd03286 ABC_MSH6_euk MutS6 hom 99.2 5.1E-11 1.1E-15 96.9 7.8 136 10-191 16-159 (218)
433 PRK06793 fliI flagellum-specif 99.2 1.2E-10 2.6E-15 103.1 10.6 128 4-177 136-273 (432)
434 PRK07721 fliI flagellum-specif 99.2 3.7E-11 8E-16 106.8 6.7 169 10-208 145-340 (438)
435 PRK06995 flhF flagellar biosyn 99.2 5.5E-11 1.2E-15 106.5 7.5 127 13-160 245-377 (484)
436 cd01130 VirB11-like_ATPase Typ 99.2 6.3E-11 1.4E-15 94.1 6.6 83 14-97 15-99 (186)
437 TIGR02788 VirB11 P-type DNA tr 99.2 3.7E-10 8.1E-15 96.5 11.8 134 17-209 137-279 (308)
438 PRK13695 putative NTPase; Prov 99.1 4.8E-11 1E-15 93.6 2.6 77 126-203 73-156 (174)
439 PRK07196 fliI flagellum-specif 99.1 2.5E-10 5.4E-15 101.1 7.3 87 10-98 142-240 (434)
440 TIGR00618 sbcc exonuclease Sbc 99.0 5.2E-10 1.1E-14 109.5 8.2 70 122-191 941-1026(1042)
441 PRK06315 type III secretion sy 99.0 6.3E-10 1.4E-14 98.8 7.7 122 10-133 151-293 (442)
442 PHA02562 46 endonuclease subun 99.0 1.9E-10 4.2E-15 105.5 4.6 65 127-192 464-544 (562)
443 TIGR00606 rad50 rad50. This fa 99.0 8.8E-10 1.9E-14 110.0 9.1 66 127-192 1195-1277(1311)
444 COG3910 Predicted ATPase [Gene 99.0 7E-09 1.5E-13 81.6 11.7 55 125-180 123-178 (233)
445 cd02023 UMPK Uridine monophosp 99.0 2.6E-10 5.6E-15 91.2 3.5 113 26-164 1-114 (198)
446 COG0178 UvrA Excinuclease ATPa 99.0 1.5E-09 3.2E-14 100.9 8.8 97 115-211 464-577 (935)
447 PRK06002 fliI flagellum-specif 99.0 1.4E-09 3E-14 96.6 7.5 76 2-79 143-229 (450)
448 TIGR00634 recN DNA repair prot 99.0 1.1E-09 2.3E-14 100.8 6.9 61 130-190 439-508 (563)
449 cd01124 KaiC KaiC is a circadi 99.0 6.5E-09 1.4E-13 81.8 10.2 63 118-180 58-130 (187)
450 PRK10246 exonuclease subunit S 99.0 1.9E-09 4.2E-14 105.4 8.4 67 125-191 943-1023(1047)
451 smart00382 AAA ATPases associa 98.9 1.1E-08 2.4E-13 75.1 10.6 98 23-170 1-100 (148)
452 cd01131 PilT Pilus retraction 98.9 6.8E-09 1.5E-13 83.2 9.9 37 26-62 3-39 (198)
453 PRK10869 recombination and rep 98.9 1.7E-09 3.7E-14 99.2 7.0 61 131-191 430-499 (553)
454 TIGR02168 SMC_prok_B chromosom 98.9 2E-09 4.2E-14 105.9 6.4 70 125-194 1083-1161(1179)
455 cd01120 RecA-like_NTPases RecA 98.9 3.7E-09 8E-14 80.5 5.9 33 131-163 67-100 (165)
456 PRK09825 idnK D-gluconate kina 98.9 1.7E-09 3.6E-14 85.3 3.8 67 23-94 2-70 (176)
457 PRK01156 chromosome segregatio 98.9 5.9E-09 1.3E-13 100.7 8.2 64 127-190 797-875 (895)
458 PRK03918 chromosome segregatio 98.9 2E-09 4.4E-14 103.6 4.9 63 126-188 783-857 (880)
459 PRK13830 conjugal transfer pro 98.8 6.8E-08 1.5E-12 92.5 13.7 43 147-189 650-699 (818)
460 PRK01889 GTPase RsgA; Reviewed 98.8 1.3E-08 2.8E-13 88.7 7.4 77 14-92 185-261 (356)
461 TIGR00235 udk uridine kinase. 98.8 2.9E-09 6.3E-14 85.8 2.1 29 22-50 4-32 (207)
462 PRK08149 ATP synthase SpaL; Va 98.8 1.8E-08 3.8E-13 89.3 7.0 70 9-80 137-216 (428)
463 PF13555 AAA_29: P-loop contai 98.7 1.4E-08 3.1E-13 66.0 4.0 38 13-50 11-49 (62)
464 PRK09862 putative ATP-dependen 98.7 9.3E-09 2E-13 92.9 4.2 61 2-63 188-248 (506)
465 cd01876 YihA_EngB The YihA (En 98.7 3.2E-08 7E-13 75.3 6.0 63 110-176 100-169 (170)
466 TIGR02903 spore_lon_C ATP-depe 98.7 9.1E-08 2E-12 88.9 10.0 110 23-175 174-291 (615)
467 TIGR02169 SMC_prok_A chromosom 98.7 1.5E-08 3.3E-13 99.8 4.9 67 126-192 1069-1144(1164)
468 PRK09270 nucleoside triphospha 98.7 2.5E-08 5.4E-13 81.7 5.4 74 22-98 31-108 (229)
469 cd01125 repA Hexameric Replica 98.7 7.9E-08 1.7E-12 79.1 8.2 123 24-179 1-147 (239)
470 TIGR00554 panK_bact pantothena 98.7 1.9E-08 4.1E-13 85.2 4.4 73 24-98 62-138 (290)
471 PRK10078 ribose 1,5-bisphospho 98.7 2.7E-08 5.9E-13 78.8 4.9 51 24-78 2-55 (186)
472 PRK07594 type III secretion sy 98.7 2.9E-08 6.2E-13 88.1 5.2 57 4-62 135-192 (433)
473 cd01136 ATPase_flagellum-secre 98.6 5E-08 1.1E-12 83.7 6.0 50 10-61 56-105 (326)
474 PRK06067 flagellar accessory p 98.6 3.9E-07 8.4E-12 74.7 10.7 50 130-179 99-154 (234)
475 PRK10416 signal recognition pa 98.6 3.9E-08 8.5E-13 84.4 4.3 72 22-94 112-192 (318)
476 TIGR02546 III_secr_ATP type II 98.6 1.1E-07 2.3E-12 84.6 7.1 51 10-62 132-182 (422)
477 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1E-07 2.2E-12 83.0 6.4 119 22-140 132-268 (358)
478 PRK09099 type III secretion sy 98.6 8.4E-08 1.8E-12 85.4 5.9 52 9-62 149-200 (441)
479 PLN02318 phosphoribulokinase/u 98.6 7.6E-08 1.6E-12 87.9 5.1 63 25-93 66-128 (656)
480 PRK13891 conjugal transfer pro 98.6 1.7E-06 3.8E-11 83.2 14.7 49 142-190 680-735 (852)
481 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.5E-07 3.3E-12 79.7 6.6 75 19-95 157-241 (287)
482 PRK07960 fliI flagellum-specif 98.5 1E-07 2.2E-12 84.7 5.6 66 12-79 164-238 (455)
483 TIGR01420 pilT_fam pilus retra 98.5 6.6E-07 1.4E-11 77.6 10.4 40 22-61 120-159 (343)
484 PRK00300 gmk guanylate kinase; 98.5 6.8E-08 1.5E-12 77.4 4.0 28 22-49 3-30 (205)
485 PRK00454 engB GTP-binding prot 98.5 3.1E-06 6.7E-11 66.8 13.1 64 111-178 126-194 (196)
486 PRK00098 GTPase RsgA; Reviewed 98.5 2.8E-07 6.2E-12 78.4 7.4 70 23-93 163-242 (298)
487 PRK05399 DNA mismatch repair p 98.5 2.4E-07 5.3E-12 89.0 7.7 124 13-188 597-733 (854)
488 PF13558 SbcCD_C: Putative exo 98.5 2E-07 4.3E-12 65.4 5.3 50 126-175 27-90 (90)
489 TIGR02322 phosphon_PhnN phosph 98.5 3.1E-07 6.7E-12 72.0 6.8 33 24-58 1-33 (179)
490 TIGR03497 FliI_clade2 flagella 98.5 2E-07 4.3E-12 82.6 6.3 53 9-63 123-175 (413)
491 TIGR01026 fliI_yscN ATPase Fli 98.5 1.4E-07 3E-12 84.2 5.2 170 10-209 150-346 (440)
492 TIGR00611 recf recF protein. A 98.5 1.8E-07 3.9E-12 81.8 5.8 59 130-188 274-344 (365)
493 TIGR03498 FliI_clade3 flagella 98.5 2.5E-07 5.5E-12 81.9 6.3 52 10-63 127-178 (418)
494 PRK03846 adenylylsulfate kinas 98.5 1.1E-07 2.3E-12 76.2 3.3 57 22-79 22-78 (198)
495 TIGR03496 FliI_clade1 flagella 98.5 2.6E-07 5.6E-12 81.8 5.9 57 4-62 117-174 (411)
496 PRK02224 chromosome segregatio 98.5 1.7E-07 3.7E-12 90.4 5.1 64 128-191 778-860 (880)
497 PLN02796 D-glycerate 3-kinase 98.4 5.1E-08 1.1E-12 84.0 1.0 54 12-65 80-143 (347)
498 PRK13898 type IV secretion sys 98.4 8.5E-06 1.8E-10 78.1 16.0 46 17-63 439-484 (800)
499 TIGR02680 conserved hypothetic 98.4 2.9E-07 6.2E-12 92.3 5.8 53 126-178 1242-1307(1353)
500 PRK04863 mukB cell division pr 98.4 3.1E-07 6.8E-12 92.0 6.0 51 10-62 14-64 (1486)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-63 Score=391.16 Aligned_cols=207 Identities=27% Similarity=0.371 Sum_probs=190.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~ 76 (212)
+++++|+||+..+|++||++|.+||+++|+||||||||||||||+++..| ++|+|+++|.++.. ...|+.+|+||
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeec
Confidence 47899999999999999999999999999999999999999999999998 69999999987742 34678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|+..+||++||.||+.++...- .+.++++.++.+.++|+++||.+..+.+|.+|||||||||+|||||+.+|+++++|
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 9999999999999999876432 35678899999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
|||| |||....++++.++++++++ +||++.+|+.+. .+|++|+++.+|+|+++-
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 9999 99999999999999999885 389999998863 378899999999999874
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-57 Score=375.05 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=188.5
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------cccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMV 69 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~ 69 (212)
+++++|.|.. ..+++||||+|++||++||||+||||||||+|+|+++..| ++|+|.++|+++.. +..|
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChHHHHHHH
Confidence 4789999975 4699999999999999999999999999999999999999 69999999988854 2457
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.||++||++.++...||++|++|+..+.. .++.+.++++.++|+.+||++..+++|.+|||||||||+|||||+.+
T Consensus 83 ~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 83 QKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred hhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 889999999999999999999999988764 56888999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADEL 209 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~ 209 (212)
|++|++||||| |||.+.+.|+++|++++++.+ ||.++.++..+ .+|++|+++..|+..++
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999 999999999999999998853 79999987753 58999999999998776
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-57 Score=363.54 Aligned_cols=207 Identities=24% Similarity=0.366 Sum_probs=190.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++||.|+++.+++|+||+|++||+++++|||||||||+||+|++++.| ++|+|+++|+++.. ..+|+.||||-|
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999 69999999999865 357889999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+..+||++||.||+.+...+. +++++..+++++++|+.+||++ +.+++|++|||||+|||.+||||+.+|++|++
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 999999999999999977764 3567788899999999999974 89999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ |||.++.++.+.+.+++++. +|||+++|... + .+|++|+++..++|+++..
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999 99999999999999998763 48999999764 3 4899999999999998753
No 4
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-56 Score=359.32 Aligned_cols=210 Identities=25% Similarity=0.354 Sum_probs=186.5
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEE
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~ 73 (212)
++++++.| +++++|+||||+|++||+++||||||||||||||+|+|+..| ++|+|.++|.++.. +.+++.+|
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-CcceEEecccchhccchHHHHHHHHhce
Confidence 47899999 899999999999999999999999999999999999999998 69999999988854 24577899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhc-----ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
|+||++.+.+.++|++|+..+..-+. ..++..++.+..+.++|+++|+.+.+.++.++|||||+|||+|||||++
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 99999999999999999988654221 1233445677788999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH-HH--HHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV-DA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~-~~--~l~~g~~~~~~~~~~~~~ 211 (212)
+|++|+.|||++ |||.+.+++++.|++++++.+ .|+++.|.++ ++ -|++|+++++|+++|+.+
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999 999999999999999988752 6999999875 44 478999999999988765
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.2e-57 Score=370.79 Aligned_cols=209 Identities=26% Similarity=0.355 Sum_probs=185.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+++|+||++++|++++|+||||||||||||+|+|++.| .+|+|+++|+++.. ..+.+.++||||
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-~~G~V~l~g~~i~~~~~kelAk~ia~vpQ 83 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-KSGEVLLDGKDIASLSPKELAKKLAYVPQ 83 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence 36899999999999999999999999999999999999999999999999 69999999999854 456788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
.+...+.+||+|.+.++..-+.. .....+++.+.+.++|+.+|+.++.++++.+|||||||||.|||||+++|++|+||
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 99888999999999987543221 11224455668999999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||...+.++++++++++++. ++||++.|..++ .+|++|++++.|+|+++-
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999 99999999999999999663 369999998764 389999999999998763
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-56 Score=382.66 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=191.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
+++++|.||+..+++|+||+|++||+++|+||||||||||||+|+|+..| ++|+|.++|++++.. ..+|.+|+|||+.
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-~~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPPEKRPIGMVFQSY 86 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhhcccceeecCc
Confidence 47899999999999999999999999999999999999999999999999 699999999999764 3567899999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+||+|||+||+.|+.... +....++..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|+||||.
T Consensus 87 ALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 87 ALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred ccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 9999999999999998743 22345667889999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhhcC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELNRQ 212 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~~ 212 (212)
| ||..-+.++...+++++++. +|||-++|... ..+|++|++...|+|+|++++
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9 99999999999999988764 48999998764 358999999999999999874
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-56 Score=358.07 Aligned_cols=208 Identities=26% Similarity=0.302 Sum_probs=190.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~~ 74 (212)
+++++++||++.+++||||+|++||+++|+||||||||||||+|.|++.| ++|+|+++|.++.. ..+++++|+
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv 89 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLSEEELYEIRKRMGV 89 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-CCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence 47899999999999999999999999999999999999999999999999 69999999999853 245778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+||...+|..+||+||+.|+.+-+ ..+++...++.+..-|+.+||... .+.+|++|||||++|++||||++.+|+++
T Consensus 90 lFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 90 LFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred EeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999987654 356788888889999999999877 99999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
++||||+ |||.+...+-++|+++++.. +|||++.+..+ + .++.+|+++++|+++++.+
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999 99999999999999999874 48999988765 3 4899999999999999875
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-56 Score=376.48 Aligned_cols=207 Identities=25% Similarity=0.298 Sum_probs=191.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
+++++|.||+..+++++|++|++||+++|+||||||||||||+|+|+..| ++|+|+++|++++.. ...|.+++|||+.
T Consensus 6 l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-~~G~I~i~g~~vt~l~P~~R~iamVFQ~y 84 (338)
T COG3839 6 LKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-TSGEILIDGRDVTDLPPEKRGIAMVFQNY 84 (338)
T ss_pred EeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhHCCEEEEeCCc
Confidence 47899999987699999999999999999999999999999999999999 699999999999873 4567899999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+||+|||+||+.|+.+.+ +.++++..+++.++.+.++++++++++|.+|||||||||+|||||+++|++++||||+
T Consensus 85 ALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 85 ALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred cccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 9999999999999998865 3467788999999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
| ||...+..+...|++++++. +|||-.+|.... .+|++|++...|+|.|+++
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9 99999999999999998764 389998887742 4788999999999999985
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-55 Score=355.12 Aligned_cols=185 Identities=30% Similarity=0.364 Sum_probs=168.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++..+|+||||+|.+||+++|+||||||||||||+|+|+..| ++|+|.++|.++. .....++||||++.
T Consensus 6 i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-~~G~V~~~g~~v~--~p~~~~~~vFQ~~~ 82 (248)
T COG1116 6 IEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRPVT--GPGPDIGYVFQEDA 82 (248)
T ss_pred EEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCcccC--CCCCCEEEEeccCc
Confidence 46899999999999999999999999999999999999999999999999 6999999999983 34556899999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
++|.+||++|+.++..... .++.+..+++.++|+.+||....+++|.+|||||||||+|||||+.+|++|+|||||+
T Consensus 83 LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 83 LLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred ccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999887642 3456677789999999999999999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR------NLHHVERARTV 191 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~ 191 (212)
||..++..+.+.+.++.++. +|||+++|...
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~L 197 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYL 197 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhh
Confidence 99999999999988876553 48999998664
No 10
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-55 Score=362.57 Aligned_cols=210 Identities=27% Similarity=0.344 Sum_probs=190.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCCc-ccccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEK-NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~~-~~~~~~i~~v~ 76 (212)
++++++.|+...+++|||++|+.||.+|++||||||||||||+|+|+..| ++|.|.++|+ +.+. ....++|||||
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-CCceEEECCEeccchhccchhhcceeEEE
Confidence 46789999999999999999999999999999999999999999999999 6999999999 5544 23457899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|+..+|+.|||.+|++|+...+. ...+..+.+.++.++|+.+.|+...+++|.+|||||||||+|||||+..|++|+||
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred echhhcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 99999999999999999987652 23456778889999999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhcC
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNRQ 212 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~~ 212 (212)
||++ ||...++++...|++++++. +|||.+++.+.. .+|++|+|...|+++|++++
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999 99999999999999998762 389999997753 48999999999999999864
No 11
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-55 Score=356.14 Aligned_cols=210 Identities=25% Similarity=0.325 Sum_probs=178.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
++|+++.|++..+|+||||++++|++++|+||||||||||+|+|+|+++| .+|+|.++|+++.....+..||||||..
T Consensus 7 v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~ 85 (254)
T COG1121 7 VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRKRLRIGYVPQKSS 85 (254)
T ss_pred EeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEccccccccccCCeEEEcCcccc
Confidence 47899999966899999999999999999999999999999999999999 6999999999886554457899999964
Q ss_pred -CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 80 -LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 80 -~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
..-+..||+|.+.++...+.. .....+.+++.++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||
T Consensus 86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE 165 (254)
T COG1121 86 VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE 165 (254)
T ss_pred cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC
Confidence 333456999999986432211 111234457889999999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-HHH-HHhcCeeecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-DAL-LKELGLLKCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~~~-l~~g~~~~~~~~~~~~~ 211 (212)
||+ +|+.++..++++|+++++++ ++||++.+... +.+ +=+.++.+.|+++++.+
T Consensus 166 P~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~ 227 (254)
T COG1121 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccC
Confidence 999 99999999999999999874 37999988775 443 22778999999998754
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-54 Score=363.73 Aligned_cols=206 Identities=27% Similarity=0.419 Sum_probs=186.9
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++|.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.| ++|+|.++|.++.. ...++.+||+||+
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~ 86 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQE 86 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccC
Confidence 68999999 69999999999999999999999999999999999999999 69999999998865 3567789999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|++||+.|.+.++... .....++++++++.+||.+..++++.+||+|||||++||+||+.+|+++|||||
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99999999999999999887532 234567899999999999877889999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ |||.++.+++++|++++.++ .||.++++... + .+|++|+++++|++++++.
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99 99999999999999999875 27999999874 3 4899999999999888753
No 13
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-54 Score=340.31 Aligned_cols=206 Identities=22% Similarity=0.328 Sum_probs=182.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
+++|+++||++.+|++||++|++++++|||||||||||||||+++.+.... .+|+|.++|+++.. ..+|+.
T Consensus 10 ~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~ 89 (253)
T COG1117 10 VRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR 89 (253)
T ss_pred ecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence 368999999999999999999999999999999999999999999877541 36999999999854 247889
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
+|+|||.|..|| +|++||+.++.+++... .++..+.+++.|+...|++ .+++.+..|||||+||++|||||+
T Consensus 90 vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 90 VGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred heeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 999999999998 89999999999987543 2567788999999998864 567888899999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||| |||.+..+|.++|.+|+++. +||++..|+.+ ..++..|++++.|+++++-
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999 99999999999999999764 48999888664 4689999999999998863
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.9e-54 Score=333.89 Aligned_cols=201 Identities=25% Similarity=0.303 Sum_probs=182.1
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceEE
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i~ 73 (212)
+++++|.|+ ++.+|+||||+|++||++-|+||||||||||||+|.+...| ++|+|+++|.++.. ..++++||
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeecccccccccchhhheee
Confidence 478999995 45599999999999999999999999999999999999999 69999999999864 23688999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+|||+..+.+..||+||++|+.... +.+..+.++++.++|+.+||.+..+..|.+|||||||||+||||++.+|++|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 9999999999999999999988765 3467788899999999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP 205 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~ 205 (212)
|.||||. |||....++++++.+++..++ |||.+.+.+.. ..+.+|+++.+..
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999 999999999999999998754 79999887653 4678999887664
No 15
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.8e-54 Score=345.52 Aligned_cols=196 Identities=30% Similarity=0.366 Sum_probs=170.6
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------ccc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMV 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~ 69 (212)
+++++|.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|+++|.+++.. .++
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHH
Confidence 4688898854 3699999999999999999999999999999999999999 799999999988642 245
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-CCCCCCChHHHHHHHHHHHHhh
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+.+|||||+..+.|.+||.||+.++..+.. .+.......+.++++.+|+.+..+ ++|.+|||||||||+|||||+.
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 679999999999999999999999776543 222255677889999999987666 8899999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHHH--HHHhcCe
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVDA--LLKELGL 200 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~~--~l~~g~~ 200 (212)
+|++|++||||. ||..+.+.+++++.+++++. +|||.+.+..+++ .+++|++
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 999999999999 99999999999999998763 3899998877664 5668873
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-53 Score=333.11 Aligned_cols=207 Identities=22% Similarity=0.316 Sum_probs=189.1
Q ss_pred CcccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcC
Q psy8250 1 METFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q 77 (212)
+++++|+|+... +++||||+++.|+++||+|||||||||+||+|++++.| ++|.|+++|.+... ...+++||.++.
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~ 82 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFG 82 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecC
Confidence 368999999876 99999999999999999999999999999999999999 69999999998743 356888999998
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
+..+|..||++||+.|+++++ +++..+.++++.++.+.++|.+++++++.++|.||||||+|||||+++|++++|||
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 83 ERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 889999999999999999886 35667788899999999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||| ||..+.+.+.+.+.+++.++ .+|.+++++.. + .++++|.+++.|+++.+.+
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999 99999999999999998764 37999998764 3 4899999999999988753
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-52 Score=363.09 Aligned_cols=207 Identities=21% Similarity=0.256 Sum_probs=184.3
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCC
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~ 78 (212)
++++++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+.+| ++|+|+++|.++... ..++.+|||||+
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 46899999 778899999999999999999999999999999999999999 699999999998542 234679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+|+++||+||+.|+...+ ..+..+...++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred ccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999976543 234455667889999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+..+..+.+.|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99 9999999999999999775 2 37999988764 2 4789999999999999865
No 18
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-52 Score=356.18 Aligned_cols=206 Identities=25% Similarity=0.280 Sum_probs=183.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
+++++|.|++..+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|+++|.++... ..++.+||+||+
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~~~~~~ig~v~q~ 88 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRARHARQRVGVVPQF 88 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchHHHHhcEEEEecc
Confidence 47899999988999999999999999999999999999999999999999 699999999998542 346779999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|++||+.+....+. .+..+...++.++++.+++.+..++++.+||+|||||++||+||+.+|++||||||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 89 DNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred CcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999998665432 23444556788999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|+++++++ .+|+++++... + .+|++|++++.|+++++.
T Consensus 166 t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99 99999999999999997653 27999998764 3 578999999999999875
No 19
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=336.43 Aligned_cols=204 Identities=23% Similarity=0.304 Sum_probs=179.3
Q ss_pred CcccccccCCcc----eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceE
Q psy8250 1 METFHPLFGDTN----YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i 72 (212)
++|+++.|+... ++++|||++.+||++||+||||||||||.++|+|+..| ++|+|.++|++.... .+.+.+
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCccccchhhccce
Confidence 478999998887 99999999999999999999999999999999999999 699999999887553 356779
Q ss_pred EEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 73 GFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 73 ~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
.+|||+| .+.|..||.+.+..+...+. .+ +..+++.++++.+|+. ..++++|.+|||||+||++|||||+.+
T Consensus 85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~--~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 85 QMVFQDPYSSLNPRRTVGRILSEPLRPHG---LS--KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred eEEecCCccccCcchhHHHHHhhhhccCC---cc--HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 9999998 46789999999988766432 22 2334489999999996 578999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
|++|||||||| ||+..+.+++++|.+++++.+ +||+..+... ..+|++|+++..++++++.
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999 999999999999999998753 7999888764 3589999999999988764
No 20
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.3e-52 Score=360.59 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=185.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|+|+||++++|++++|+|||||||||||++|+|+.+| ++|+|.++|+++... ..++.+||+||++
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~ 85 (353)
T TIGR03265 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQKRDYGIVFQSY 85 (353)
T ss_pred EEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 46899999988899999999999999999999999999999999999998 699999999998542 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+||.+||+||+.|+...+ ..+..+...++.++++.++|.++.++++.+|||||||||+|||||+.+|+++|||||+
T Consensus 86 ~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 86 ALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999999999999976542 2345566778999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.++.+.|+++.++. +|||.+++... + .+|++|+++..|+++++.+
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9 99999999999999987652 37999988664 3 5899999999999999875
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-52 Score=359.44 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=185.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-ccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+|+||++++||+++|+|||||||||||++|+|+++| ++|+|.++|.++.... .++.++|+||++
T Consensus 9 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 87 (351)
T PRK11432 9 LKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-TEGQIFIDGEDVTHRSIQQRDICMVFQSY 87 (351)
T ss_pred EEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 36899999988899999999999999999999999999999999999999 6999999999986432 356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+++||+||+.|+...+ ..+..+..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++||||||+
T Consensus 88 ~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 88 ALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred ccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 9999999999999986543 2345566778999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.++.+.|++++++. +|||.+++... ..+|++|+++..|+++++++
T Consensus 165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9 99999999999999997652 37999988664 35889999999999999865
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.4e-52 Score=356.73 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=181.5
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
+++++++|++ ..+|+||||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|.++... ..++
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~~G~I~i~G~~i~~~~~~~l~~~r~ 82 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSELTKARR 82 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhc
Confidence 4689999952 4699999999999999999999999999999999999999 699999999998542 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
.+||+||++.+++.+||+||+.++.... +.+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 83 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred CEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999876532 2345566678899999999999999999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
++|||||||+ ||+.++..++++|++++++ + .||+++.+... + .+|++|++++.|+++++.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999 9999999999999999875 2 27999998764 3 478999999999988874
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.2e-51 Score=357.88 Aligned_cols=207 Identities=24% Similarity=0.314 Sum_probs=184.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc--eEEEECCEeCCcc-cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD--GQILLNGLEVEKN-LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~--G~I~~~g~~~~~~-~~~~~i~~v~Q 77 (212)
++++++.|++..+|+|+||+|++|++++|+|||||||||||++|+|+.+| ++ |+|.++|+++... ..++.++|+||
T Consensus 8 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 8 IDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred EEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 46899999988899999999999999999999999999999999999998 69 9999999998542 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++.+|+.+||+||+.|+...+ ..+..+...++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999976543 23455666789999999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh--c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD--R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~--~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+ ||+..+.++.+.|++++++ . +|||.+++... + .+|++|+++..|+++++.+
T Consensus 164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999 9999999999999999875 2 27999998664 2 4789999999999999865
No 24
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-51 Score=337.49 Aligned_cols=207 Identities=26% Similarity=0.346 Sum_probs=179.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~ 74 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccChhhHHHHhcceEE
Confidence 46899999888899999999999999999999999999999999999998 699999999987431 24567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+||++.+++.+|+.||+.++..... .....+...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999988644221 12334445678899999999988899999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|++++.+ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999 9999999999999998764 2 27999988664 3 468899999999988874
No 25
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.2e-51 Score=355.44 Aligned_cols=210 Identities=25% Similarity=0.324 Sum_probs=184.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ..++.++|+||++
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~ 83 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-TSGHIRFHGTDVSRLHARDRKVGFVFQHY 83 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHCCEEEEecCc
Confidence 46899999988899999999999999999999999999999999999998 699999999998542 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+|+.+||+||+.++...... ...+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 84 ~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP 163 (353)
T PRK10851 84 ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEP 163 (353)
T ss_pred ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999987653210 1223455667889999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+..+..+.+.|++++++. .|||.+++... + .+|++|+++..|+++++.+
T Consensus 164 ~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 164 FGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99 99999999999999998752 37999998764 3 4789999999999998864
No 26
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.4e-51 Score=353.66 Aligned_cols=207 Identities=24% Similarity=0.261 Sum_probs=182.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|.++... ..++.+||+||+
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~~~~~~~ig~v~q~ 122 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARARLARARIGVVPQF 122 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcchHHHhccEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999 699999999988532 345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+.+....+. ....+...++.++++.+++.+..++++.+||||||||++||+||+.+|+++|||||
T Consensus 123 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 123 DNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred ccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999999987665432 23334455678899999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+.++..++++|++++.++ .+|+++++...+ .+|++|+++++|+++++.+
T Consensus 200 t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99 99999999999999997653 279999987643 4789999999999998753
No 27
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-52 Score=328.35 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=184.1
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc----cceEEEEcC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM----VKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~----~~~i~~v~Q 77 (212)
+++.|+|++++++++|||++++||++||+|||||||||.+.++.|+..| ++|+|+++|.+++...+ +.-+||+||
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-d~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-DSGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-CCceEEECCcccccCChHHHhhcCcccccc
Confidence 5899999999999999999999999999999999999999999999999 69999999999986432 335899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++..|-.+||.||+......+.. .....+.+.+++++|+.|.+.+..+.+..+||||||+|+.|||||+.+|+.++|||
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999987766531 22234556678899999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+ .||.+...|.++++.|+..+. -|+..+.-.. + +++++|+++++|+|+++.+
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999 999999999999999998642 4888765443 3 5899999999999999864
No 28
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-52 Score=333.02 Aligned_cols=209 Identities=18% Similarity=0.213 Sum_probs=185.6
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q 77 (212)
++++|+||+..+++||||++++||+++||||||||||||+|+|+|+++| ++|+|.++|++++... .+.-++..||
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-CCceEEECCcccCCCCHHHHHhccceeecc
Confidence 6899999999999999999999999999999999999999999999999 6999999999997532 2445788999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc-------ccC--CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKM-------DRN--LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~-------~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
.+.+|++|||.||+..+...+. ... ....+..+++.++|+.+||.+.++++.++||+|||+|+.|||||+.
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 9999999999999998754221 000 1245667789999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
+|++|+||||.+ +.+....++.++|++++++.+ .||+..+...+ .+|+.|+++++|+|++++.
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999 999999999999999998642 49999998754 4899999999999999874
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=337.75 Aligned_cols=206 Identities=22% Similarity=0.266 Sum_probs=184.2
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----cccccceEEEEc
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVP 76 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~----~~~~~~~i~~v~ 76 (212)
++++++|++. .+++++||+|++|++++|+||||||||||+++++|++.| ++|.|.++|.++. ...+++.+||||
T Consensus 7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf 85 (235)
T COG1122 7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSLLELRQKVGLVF 85 (235)
T ss_pred EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-CCCEEEECCeeccchhhHHHhhcceEEEE
Confidence 5788899765 899999999999999999999999999999999999999 6999999999876 235688899999
Q ss_pred CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|+|. .+...||.+.++|+.... +.+.++...++.++++.+|+.+++++.+.+|||||||||+||.+|+++|++|||
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred ECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 9983 345569999999987643 456677889999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.+++++++++++++.+. .|||++.+..+ + .+|++|+++++|+|.++-+
T Consensus 163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999 99999999999999998874 27999999874 3 4789999999999888753
No 30
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.6e-51 Score=356.26 Aligned_cols=207 Identities=22% Similarity=0.271 Sum_probs=184.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+++||++++|++++|+|||||||||||++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 95 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDGQDITHVPAENRHVNTVFQSY 95 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCc
Confidence 46899999988899999999999999999999999999999999999998 699999999998542 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.|+...+ +.+..+...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||+
T Consensus 96 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 96 ALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred ccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999999999976533 2344555667899999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||...+..+.+.|++++++. +|||.+++... + .+|++|+++..|+++++++
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9 99999999999999998752 37999988664 3 5789999999999999865
No 31
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.4e-51 Score=352.54 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=179.5
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cc----cceEEEEcCC
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LM----VKVSGFVPQH 78 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~----~~~i~~v~Q~ 78 (212)
|.|+++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++... .+ ++.++|+||+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 578888999999999999999999999999999999999999999 699999999998642 12 5689999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+|+++||+||+.+..... +....+..+++.++++.+||....++++.+|||||||||+|||||+.+|++||||||
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999876543 234556667889999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+.++..+.+.+.+++++ + +|||++++... + .+|++|+++..|+++++.+
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99 9999999999999999764 2 37999988664 2 4789999999999998753
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-51 Score=354.85 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=184.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+++||++++|++++|+|||||||||||++|+|+.+| ++|+|+++|+++... ..++.+||+||++
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~ 100 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVDLSHVPPYQRPINMMFQSY 100 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHCCEEEEeCCC
Confidence 46899999988899999999999999999999999999999999999999 699999999988542 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||.||+.|+.... ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||+
T Consensus 101 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 101 ALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999876533 2345566678899999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhcC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNRQ 212 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~~ 212 (212)
+ ||+..+..+.+.|+++.++. +|||.+++... + .+|++|+++..|+++++.++
T Consensus 178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9 99999999999999886642 37999988764 3 47899999999999998753
No 33
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-50 Score=330.39 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=179.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+||+
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHHhhcEEEecCC
Confidence 47899999888899999999999999999999999999999999999988 69999999988743 2234679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+++|+.+....+ .....+...++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 82 LSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred ccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998865432 122334556788999999999888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|++++.+ . .+|+.+.+... + .+|++|+++..+++++++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHcC
Confidence 99 9999999999999998765 3 27999988764 3 478899999999888763
No 34
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-51 Score=353.84 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=182.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|+|+||+|++|++++|+|||||||||||++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus 6 i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred EEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 46899999988899999999999999999999999999999999999999 699999999988542 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.++.... ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 ~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred ccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999876532 2234455677899999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+.++..+++.|++++.+ . .|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9 9999999999999998765 2 37999988664 3 4788999999999998854
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.8e-51 Score=345.53 Aligned_cols=202 Identities=24% Similarity=0.368 Sum_probs=177.3
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCCCCCCC
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~~~~~~ 83 (212)
|.|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++... ..++.+||+||++.+++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 468888899999999999999999999999999999999999999 699999999987532 34567999999999999
Q ss_pred CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD 162 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD 162 (212)
.+|++||+.+....+. ....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+ ||
T Consensus 80 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 80 DLTGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9999999998665432 2334455678899999999988999999999999999999999999999999999999 99
Q ss_pred hhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 163 TLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 163 ~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+.+++.++++|+++++++ .+|+++++... + .+|++|+++..|+++++.+
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999997653 27999988764 3 4788999999999988753
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-50 Score=343.70 Aligned_cols=206 Identities=24% Similarity=0.273 Sum_probs=179.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++... ..++.+||+||+
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 85 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRARLARVAIGVVPQF 85 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHHHHhhcEEEEecc
Confidence 46899999988899999999999999999999999999999999999998 699999999987432 245679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+.+....+. ....+....+.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999987554321 23334455678899999999889999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|++++.++ .+|+++++... + .+|++|+++..|+++++.
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99 99999999999999997653 27999988764 3 478899999999998874
No 37
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.1e-50 Score=343.10 Aligned_cols=207 Identities=21% Similarity=0.341 Sum_probs=182.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
+++++++|+++.+|+|+||++++|+++||+||||||||||+++|+|++.| ++|+|.++|.++... ..++.+||+||+
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~~~~~ig~~~q~ 83 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHHHHhceEEecCC
Confidence 46899999988999999999999999999999999999999999999998 699999999988542 345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+.+....+. .+..+...+++++++.+|+.+..++++..||+|||||++|||||+.+|+++|||||
T Consensus 84 ~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 84 NPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred CCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999998765432 23344556788999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+.+++.++++|+++++.. .+|+++++...+ .+|++|++++.|+++++.+
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99 99999999999999997532 279999887643 4789999999999998753
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-50 Score=325.27 Aligned_cols=200 Identities=29% Similarity=0.359 Sum_probs=171.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|+||++
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 47899999888899999999999999999999999999999999999998 699999999987532 2345799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|++||+.+..... ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred hhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999999999998765432 1233344567889999999998889999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
+ ||+.++..++++|++++++ . .+|+.+.+... + .+|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9 9999999999999998764 2 27999887654 3 367788876654
No 39
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-50 Score=347.03 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=179.7
Q ss_pred CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
+++++++|+ ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|.++|.++... ..++
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~ 82 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-TSGRVLVDGQDLTALSEKELRKARR 82 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHhc
Confidence 468999997 46799999999999999999999999999999999999998 699999999988532 1356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
.++|+||++.+++.+|+.||+.++.... +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|
T Consensus 83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred CEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999875433 2234445567889999999999899999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
++|||||||+ ||+.++..++++|++++++ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999 9999999999999999764 2 27999988664 3 478899999999988774
No 40
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.2e-50 Score=326.52 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=178.5
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~ 76 (212)
++++++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+++.++|++
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHHhhhEEEec
Confidence 4689999987 7899999999999999999999999999999999999998 69999999998753 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|+.+|+.+....+. ....+..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999989999999988654332 223344567889999999998889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.+++.++++|++++... .+|+++.+... + .+|++|+++..|++++++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 220 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence 9999 99999999999999987642 37999988664 3 468899999999988763
No 41
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.4e-50 Score=328.65 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=179.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 47899999888899999999999999999999999999999999999988 6999999999875421 235699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccC-------CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRN-------LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
|++.+++.+|++||+.+......... ....+....+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999988654321110 01234455788999999999889999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++||||||+ ||+.++..++++|++++.++ .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999 99999999999999987543 37999988664 3 4788999999999888753
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-50 Score=328.71 Aligned_cols=209 Identities=28% Similarity=0.333 Sum_probs=177.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 83 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQERNVGFVFQHY 83 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccccceEEEecCC
Confidence 47899999888899999999999999999999999999999999999988 699999999987532 2245699999999
Q ss_pred CCCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+++.+|+.||+.++....... .....+..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++||||||
T Consensus 84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9998899999998865432110 012233445678899999999888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.+++.++++|.+++.+ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 164 FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99 9999999999999999764 2 26999887653 3 468899999999988874
No 43
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.6e-50 Score=326.81 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=177.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c-ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L-MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~-~~~~i~~v~ 76 (212)
++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++... . .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccCCHhHHHhccEEEec
Confidence 46899999988899999999999999999999999999999999999998 699999999987432 1 235699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|++||+.+....+. .........+.++++.+++.+..++.+.+||||||||++|||||+.+|++||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999987644321 223344557789999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.+++.++++|++++++. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999 99999999999999987643 26999877664 3 478899999999988764
No 44
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-49 Score=324.26 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=173.0
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~ 76 (212)
++++++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~--~~~~i~~v~ 79 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTG--PGPDRGYVF 79 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcc--ccCcEEEEe
Confidence 4689999987 6899999999999999999999999999999999999988 69999999998753 356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|+.||+.+....+ ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred cccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 9999988899999998865432 1233344567889999999998889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCch
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPAD 207 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~~ 207 (212)
|||+ ||+.++..++++|+++..+ . .+|+++++... + .+|+ +|+++..++.|
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999 9999999999999998653 2 27999887654 3 3677 69988877654
No 45
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=4.4e-50 Score=351.69 Aligned_cols=209 Identities=24% Similarity=0.331 Sum_probs=181.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|+++|+++.. ...++.+||++|
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 46899999999999999999999999999999999999999999999999 69999999998854 234677999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++.+|++||+.++...+.. .........++++++++.+|+.+..++++.+||||||||++|||||+++|++||||
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999885432110 01112344567899999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++.+++++|+++++++ .+|+++.+... + .+|++|+++++|+++++.
T Consensus 165 EPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999 99999999999999998643 27999999764 3 478999999999998753
No 46
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.9e-50 Score=323.86 Aligned_cols=195 Identities=22% Similarity=0.280 Sum_probs=166.4
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i 72 (212)
++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEehhhcChhHHHHHHHhc
Confidence 4689999964 4699999999999999999999999999999999999998 699999999987431 135679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
+|+||++.+++.+|+.||+.+..... .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998865432 122334456788999999999889999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG 199 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~ 199 (212)
|||||||+ ||+.++..+.++|+++++++ .+|+.+.+... + .+|++|+
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999 99999999999999997643 37999988654 3 3455665
No 47
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-50 Score=329.00 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=176.6
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~ 73 (212)
++++++.|++ +.+++|+||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|+++... ..++.++
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhHHHHHHhccE
Confidence 4689999987 7899999999999999999999999999999999999988 699999999987532 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhh-----cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLK-----MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
|+||++.+++.+|+.+|+.+..... .............+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 161 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998753210 00011112344567889999999988899999999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|+++||||||+ ||+.++..++++|++++++ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999 9999999999999998754 2 27999988754 3 478899999999988764
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-49 Score=325.89 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=178.5
Q ss_pred CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
++++++.|+++ .+++++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHh
Confidence 46899999876 899999999999999999999999999999999999998 699999999987532 1246
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
.++|+||++.+++.+|+.||+.+....+. .........+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred heEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999988654321 233344567889999999998899999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+++||||||+ ||+.++..++++|++++++ . .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999 9999999999999998764 2 27999988664 3 478899999999988764
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.8e-49 Score=322.38 Aligned_cols=195 Identities=27% Similarity=0.327 Sum_probs=165.6
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~ 69 (212)
++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .+
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhHHHHHHh
Confidence 4689999976 6899999999999999999999999999999999999998 6999999999875321 24
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|++|++.+++.+|+.||+.+....+. .......+.+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 579999999999999999999998654321 22333456788999999999888999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcC
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELG 199 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~ 199 (212)
|++|||||||+ ||+.++..+.++|++++.+ . .+|+++.+..++ .+|++|+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 99999999999 9999999999999999763 2 279998775222 2455654
No 50
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-49 Score=330.78 Aligned_cols=205 Identities=25% Similarity=0.345 Sum_probs=176.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c----ccceEEE
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L----MVKVSGF 74 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~----~~~~i~~ 74 (212)
.++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... . .++.++|
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-TSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 4677888888899999999999999999999999999999999999998 699999999987531 1 1357999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+||++.+++.+|+.||+.+..... .........++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998865432 12233445678899999999988999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..+.++|.+++.+ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999 9999999999999998754 2 27999987654 3 467899999999988774
No 51
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-49 Score=325.22 Aligned_cols=205 Identities=23% Similarity=0.322 Sum_probs=174.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC-----CCCCceEEEECCEeCCcc-----cccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI-----QGDVDGQILLNGLEVEKN-----LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G~I~~~g~~~~~~-----~~~~ 70 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++ +| .+|+|.++|+++... .+++
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhhcchHHHHHHh
Confidence 478999998888999999999999999999999999999999999999 77 699999999987431 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC--CCCCChHHHHHHHHHHHHhh
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV--LNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqrqRv~lA~al~~ 148 (212)
.++|+||++.++ .+|++||+.+...... .....+...++.++++.+|+.+..++. +.+||||||||++|||||+.
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 799999999888 7899999988654321 111223456788999999998876776 59999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
+|++|||||||+ ||+.++..++++|++++.+. .+|+++.+... + .+|++|++++.|+++++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999 99999999999999997652 27999987654 3 47889999999988764
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3e-49 Score=319.97 Aligned_cols=200 Identities=23% Similarity=0.290 Sum_probs=172.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|++|++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcccceEEEEecCh
Confidence 46899999988899999999999999999999999999999999999988 699999999987532 2245799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|++||+.++.... .....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred hhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9988899999998865432 1233445567889999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
+ ||+.++..++++|++++.+ . .+|+.+.+... + .+|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9 9999999999999999764 2 27999887664 3 367788887654
No 53
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.3e-49 Score=327.12 Aligned_cols=208 Identities=25% Similarity=0.316 Sum_probs=178.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----------ccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----------LMV 69 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----------~~~ 69 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .++
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLR 84 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhh
Confidence 36899999888899999999999999999999999999999999999988 699999999987421 234
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|+||++.+++.+|+.||+.++..... ..........+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 579999999999998999999987543211 123344456788999999999888999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|++|||||||+ ||+.++..++++|.+++++. .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999 99999999999999987643 27999888654 3 4788999999999888643
No 54
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.2e-49 Score=330.15 Aligned_cols=207 Identities=24% Similarity=0.287 Sum_probs=177.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~ 74 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 88 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDGENIPAMSRSRLYTVRKRMSM 88 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccChhhHHHHhhcEEE
Confidence 46899999888899999999999999999999999999999999999998 699999999987531 13456999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+||++.+++.+|+.||+.+...... ..........+.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus 89 v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 89 LFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999987643221 12333445567889999999988999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.+++.++++|++++++ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999 9999999999999998764 2 27999888664 3 367899999999988764
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-49 Score=319.22 Aligned_cols=198 Identities=23% Similarity=0.363 Sum_probs=171.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..++.++|++|++.
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~-~~~~~i~~~~q~~~ 80 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDI-AARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhH-HHHccEEEeccCCc
Confidence 46899999888899999999999999999999999999999999999988 69999999988753 34567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.||+.+....+ ........+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999999998765432 12334455678899999999988899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKC 203 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~ 203 (212)
||+.++..+.++|++++.++ .+|+.+.+... + .+|++|++++.
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 99999999999999987543 27999887653 3 36778887654
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-49 Score=324.29 Aligned_cols=201 Identities=21% Similarity=0.272 Sum_probs=171.6
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------c-c
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------M-V 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~-~ 69 (212)
++++++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|+++.... . +
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHh
Confidence 4688999964 4699999999999999999999999999999999999988 6999999999875321 1 2
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|+||++.+++.+|+.||+.+..... .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998865432 123334456788999999999888999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRP 205 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~ 205 (212)
|++|||||||+ ||+.++..+.++|++++.+ . .+|+++.+...+ .+|++|++++.++
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999 9999999999999998653 2 279999876654 3677899887765
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-49 Score=327.99 Aligned_cols=209 Identities=26% Similarity=0.355 Sum_probs=176.0
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~ 73 (212)
++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIG 82 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHHHHHHHhheE
Confidence 468999998 77899999999999999999999999999999999999988 699999999987431 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhc-----ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
|+||++.+++.+|+.+|+.+...... ...........++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (243)
T TIGR02315 83 MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ 162 (243)
T ss_pred EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999976432100 0001122345678889999999988899999999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|++|||||||+ ||+.++..+.++|++++++ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 163 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999 9999999999999998654 2 27999988654 3 478899999999988764
No 58
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.8e-49 Score=325.02 Aligned_cols=207 Identities=24% Similarity=0.349 Sum_probs=178.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~~i~~v 75 (212)
++++++.|++..+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... .+++.++|+
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 82 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDERLIRQEAGMV 82 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhHHHHhhceEEE
Confidence 46889999888899999999999999999999999999999999999988 699999999987531 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+|++.+++.+|+++|+.+..... ......+....+.++++.+|+.+..++++.+||+|||||++|||||+.+|+++||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999998754211 1123344556788999999999888999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..+.++|+++++++ .+|+++.+... + .+|++|++++.|+++++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999 99999999999999987543 27999988654 3 478899999999988764
No 59
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-49 Score=325.20 Aligned_cols=206 Identities=24% Similarity=0.368 Sum_probs=177.8
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+|
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEc
Confidence 4689999987 7899999999999999999999999999999999999988 69999999998753 23356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
|++.+++.+|+.||+.++.... ..........+.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998765432 1233444567889999999985 7899999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..+.++|++++.+ . .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999 9999999999999999764 2 27999877654 3 478899999999888764
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-49 Score=333.68 Aligned_cols=206 Identities=18% Similarity=0.273 Sum_probs=176.1
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~ 70 (212)
++++++.|++ +.+|+||||+|.+||++||+||||||||||+++|+|+++| ++|+|+++|.++... .+++
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-TSGKIIIDGVDITDKKVKLSDIRK 83 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEECCEECCCcCccHHHHhh
Confidence 3688999964 4699999999999999999999999999999999999999 699999999998532 3456
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 71 VSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 71 ~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
.+||+||++. .+...||+||+.++.... +....+...++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 84 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 84 KVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred ceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 7999999973 334579999999865432 234455667789999999997 6789999999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|++++++ . .||+++.+... + .+|++|+++++|+++++.
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 9999999999999999765 2 27999988654 3 478899999999988863
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.8e-49 Score=321.14 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=175.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+++++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 46899999888899999999999999999999999999999999999998 6999999999875321 245699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++.+++.+|++||+.+...... ..+....+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999988654321 122344567788888 577788999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.++..++++|++++.+. .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999 99999999999999987543 27999987664 3 4788999999999887753
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.5e-49 Score=338.51 Aligned_cols=209 Identities=18% Similarity=0.228 Sum_probs=178.8
Q ss_pred CcccccccCC-------------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-
Q psy8250 1 METFHPLFGD-------------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN- 66 (212)
Q Consensus 1 ~~~l~~~~~~-------------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~- 66 (212)
++++++.|+. ..+++||||+|++||++||+||||||||||+++|+|++.| ++|+|+++|.++...
T Consensus 11 v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i~~~~ 89 (331)
T PRK15079 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMK 89 (331)
T ss_pred EeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEECCcCC
Confidence 4688888852 4699999999999999999999999999999999999998 699999999998532
Q ss_pred -----cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHH
Q psy8250 67 -----LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERK 138 (212)
Q Consensus 67 -----~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrq 138 (212)
.+++.++||||++ .+++.+|+.+|+.+....+. ......+..+++.++++.+++. ...++++.+|||||+|
T Consensus 90 ~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~Q 168 (331)
T PRK15079 90 DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQ 168 (331)
T ss_pred HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence 2356799999998 57889999999988654331 1234455667788999999995 5789999999999999
Q ss_pred HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250 139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADE 208 (212)
Q Consensus 139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~ 208 (212)
||+|||||+.+|++||+||||+ ||+.++.+++++|++++++. .|||++.+... + .+|++|++++.|++++
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999 99999999999999997752 37999998764 2 4789999999999988
Q ss_pred hhc
Q psy8250 209 LNR 211 (212)
Q Consensus 209 ~~~ 211 (212)
+.+
T Consensus 249 i~~ 251 (331)
T PRK15079 249 VYH 251 (331)
T ss_pred HHc
Confidence 753
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.3e-49 Score=320.82 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=172.1
Q ss_pred CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEE
Q psy8250 1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~ 74 (212)
++++++.|++. .+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.. ..+++.++|
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEEcccCHHHHHhhEEE
Confidence 46899999876 799999999999999999999999999999999999988 69999999998753 234567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+||++.+++.+|+.||+.+....+ .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus 83 ~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 83 VSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred ecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998765432 12334456678899999999988999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
|||||+ ||+.++..++++|++++++. .+|+.+.+... + .+|++|+++..|
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999 99999999999999997543 37999887654 3 367788876543
No 64
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-49 Score=344.35 Aligned_cols=202 Identities=25% Similarity=0.329 Sum_probs=173.4
Q ss_pred ccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------ccceEEEEcC
Q psy8250 5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MVKVSGFVPQ 77 (212)
Q Consensus 5 ~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~~~i~~v~Q 77 (212)
.+.|+...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.... +++.++|+||
T Consensus 35 ~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred HhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 3344444489999999999999999999999999999999999999 6999999999985321 2357999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++.+|+.+|+.||+.+..... .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999999876543 22334455678899999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+ ||+.++..+.++|.+++++ + .+|+++++... + .+|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999 9999999999999998754 2 37999988664 3 478899999999988874
No 65
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.8e-49 Score=318.65 Aligned_cols=192 Identities=26% Similarity=0.303 Sum_probs=163.9
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.....++.++|+||++
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999987 7899999999999999999999999999999999999998 6999999999875444556799999997
Q ss_pred C-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 L-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
. .++.+|+.||+.++.... . ....++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 81 DYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred hhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4 344679999998754322 1 1124678999999999889999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCe
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGL 200 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~ 200 (212)
|+ ||+.+++.++++|++++++. .+|+++.+... + .+|++|++
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99 99999999999999996553 37999887653 3 35667765
No 66
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.5e-49 Score=323.42 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=177.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+.++|++|+
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~~~~~~i~~~~q~ 82 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGHDLRRAPRAALARLGVVFQQ 82 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcccCChhhhhhEEEeCCC
Confidence 46889999888899999999999999999999999999999999999988 699999999987432 223579999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.+|+.+....+ ..........+.++++.+|+.+..++++.+|||||+||++|||||+.+|+++|||||
T Consensus 83 ~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 83 PTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred CCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 98888999999998765432 123334456788999999999889999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..+.++|++++++ . .+|+++.+..++ .+|++|+++..++++++.
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99 9999999999999998753 2 279998876443 478899999999887764
No 67
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-49 Score=306.96 Aligned_cols=204 Identities=26% Similarity=0.358 Sum_probs=177.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
+.++++.|+..+- .++++|+.||+++|+|||||||||||++|+|+..| .+|+|+++|++.+.. ...+-++++||+.
T Consensus 4 L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~RPVSmlFQEn 80 (231)
T COG3840 4 LDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAERPVSMLFQEN 80 (231)
T ss_pred ccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCcccCChhhhhhcc
Confidence 3567778876543 67888999999999999999999999999999999 699999999998754 3456789999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|..+||.+|+.++..-.. .+ ..+.+++++.++.++|+..+.++.|.+|||||||||+|||+|+++-+|++|||||
T Consensus 81 NLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 81 NLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred ccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 99999999999998754211 12 3466778999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
+ |||.-+.+++.++..++.+. +||+.++++... .++.+|++.+.|+.+++-
T Consensus 158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9 99999999999999998874 489999987753 478899999999887753
No 68
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-49 Score=318.01 Aligned_cols=206 Identities=21% Similarity=0.360 Sum_probs=190.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+++++|+||++.+++|+||++++|++.|++|||||||||++|+|.|++.| ++|+|.|+|.+++. ..+.+|||+|.+..
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~~-~~~~rIGyLPEERG 82 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLSQ-EIKNRIGYLPEERG 82 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchhh-hhhhhcccChhhhc
Confidence 47899999999999999999999999999999999999999999999999 69999999999854 34567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+||.|.+.|.+.++ +.+.++.++.+..||+++++.....+++.+||-|++|++.+..|++++|+++|||||||
T Consensus 83 Ly~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 83 LYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred cCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999999999999886 45778889999999999999999999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 161 -VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|||.+.+.+.+.+.+++.++. +|.++.+...+ .+|++|+.+.+|+.+++++
T Consensus 160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999998763 69998887643 4788999999999999886
No 69
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.7e-49 Score=323.97 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=177.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-----ceEEEECCEeCCc-----ccccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-----DGQILLNGLEVEK-----NLMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-----~G~I~~~g~~~~~-----~~~~~ 70 (212)
++++++.|++..+++|+||+|++||+++|+||||||||||+++|+|+++| + +|+|.++|+++.. ...++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 82 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL-VPGVRIEGKVLFDGQDIYDKKIDVVELRR 82 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CcCCCCceEEEECCEEccccccchHHHHh
Confidence 46899999888899999999999999999999999999999999999987 6 9999999998753 12356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHH
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.++|+||++.+++ +|++||+.+....+. .....+....+.++++.+|+. +..++++.+||||||||++|||||
T Consensus 83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred heEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999998888 899999988654321 112344456788999999997 778899999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|+++||||||+ ||+.++..++++|+++++.. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999 99999999999999987642 27999988664 3 478899999999988774
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-49 Score=329.42 Aligned_cols=206 Identities=27% Similarity=0.284 Sum_probs=176.2
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~ 76 (212)
++++++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... .+++.++|+|
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 468999995 56799999999999999999999999999999999999998 699999999988532 2356799999
Q ss_pred CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++. .++..|+.+|+.++.... .........++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9973 445679999998764422 233444556788999999999889999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..++++|++++.++ .||+++.+..+ + .+|++|++++.|+++++.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999 99999999999999997643 27999988654 3 478999999999987653
No 71
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-49 Score=315.32 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=176.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
+++++.+||..++|++|||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++++.. ..+.-++|||
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 46899999999999999999999999999999999999999999999998 699999999999753 2456699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|...+|+.+||+||+.++...... +.......+++.+.| .|.+..+++.++|||||||.++|||||+.+|++|+|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999987654321 111122267778887 467888999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~ 211 (212)
|||+. |-|.-.++|++.|++++++.. ..+...|... ..+|.+|+++..|+++++..
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999 999999999999999997632 3666666554 25899999999999998753
No 72
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-50 Score=330.86 Aligned_cols=196 Identities=24% Similarity=0.288 Sum_probs=179.0
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEEEcCCCCCCC
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~v~Q~~~~~~ 83 (212)
...++|+||+++.||+++|+|-||||||||+|++++++.| ++|+|.++|.++... .+++.+++|||+..++|
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 3468999999999999999999999999999999999999 699999999998531 24567999999999999
Q ss_pred CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD 162 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD 162 (212)
+.||.||+.|+.... +.++++.++++.++++.+||..+.+++|++|||||||||.|||||+.+|+|||+||||| ||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 999999999998765 56788999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 163 TLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 163 ~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
|.-+.++.+.|.+++.+. .|||+++|... ..+|++|+++.+|+|+||-
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999888887763 38999999764 4689999999999999985
No 73
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=322.40 Aligned_cols=207 Identities=20% Similarity=0.338 Sum_probs=177.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|+|
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 46899999888899999999999999999999999999999999999998 699999999987532 1345799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|+.||+.+...... .....+....+.++++.+++.+..++++.+|||||+||++|||||+.+|++||||
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred cCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999987543221 1223344567889999999998889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..+.+++++++.++ .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999 99999999999999987643 27999877654 3 468899999999988764
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-49 Score=334.01 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=175.0
Q ss_pred CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----------
Q psy8250 1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------- 65 (212)
Q Consensus 1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------- 65 (212)
++++++.|++. .+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+...
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceeccccccccccccc
Confidence 36899999643 599999999999999999999999999999999999998 69999999876421
Q ss_pred -----------------ccccceEEEEcCCC-CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccC
Q psy8250 66 -----------------NLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKN 126 (212)
Q Consensus 66 -----------------~~~~~~i~~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~ 126 (212)
..+++.+||+||++ ..++..||+||+.|+.... +.+..+...++.++++.+|+. +..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 12456799999986 2344579999999865432 234555667889999999996 6889
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHh
Q psy8250 127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKE 197 (212)
Q Consensus 127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~ 197 (212)
+++.+||||||||++|||||+.+|++|||||||+ ||+.++..++++|++++++. .+||++.+... + .+|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999 99999999999999997643 27999987654 3 47889
Q ss_pred cCeeecCCchhhhc
Q psy8250 198 LGLLKCRPADELNR 211 (212)
Q Consensus 198 g~~~~~~~~~~~~~ 211 (212)
|++++.|+++++.+
T Consensus 241 G~i~~~g~~~~~~~ 254 (305)
T PRK13651 241 GKIIKDGDTYDILS 254 (305)
T ss_pred CEEEEECCHHHHhc
Confidence 99999999988653
No 75
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-49 Score=331.58 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=174.7
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~ 68 (212)
++++++.|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~ 83 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKNKKLKPL 83 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence 3689999964 4699999999999999999999999999999999999998 69999999998842 124
Q ss_pred cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.+||+||++ .++ ..||+||+.++.... .....+..+++.++++.+||. ...++++.+||||||||++||||
T Consensus 84 ~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 84 RKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 56799999987 344 569999999865432 223445556789999999996 66799999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.++..++++|++++++ . .+|+++.+... + .+|++|+++++|+++++.
T Consensus 160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999 9999999999999999765 2 27999988664 3 478899999999988864
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.6e-49 Score=316.66 Aligned_cols=196 Identities=21% Similarity=0.320 Sum_probs=169.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-ccccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-~~~~~~i~~v~Q~~ 79 (212)
++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+||++
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHHhhEEEecCCC
Confidence 46899999888899999999999999999999999999999999999988 69999999988743 23356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.++...+. . ...++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 82 GFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred ccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999999999988654321 1 2345788999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
+ ||+.++..++++|++++++. .+|+.+.+... + .+|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9 99999999999999987643 37999988654 3 467888877654
No 77
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-49 Score=307.55 Aligned_cols=207 Identities=24% Similarity=0.340 Sum_probs=184.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------------c-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------------N- 66 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------------~- 66 (212)
+++++|+||...+|++||++..+|+++.|||.|||||||+|+||+-+..| ..|+|.++|.++.. .
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 36899999999999999999999999999999999999999999988888 69999999988731 0
Q ss_pred --cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250 67 --LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 67 --~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
.++...++|||+..++..|||.||+..... +. .+.++.+..++++.+|.++|+.+..+.+|..|||||+||++|||
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 134457999999999999999999876442 11 24567888899999999999999999999999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+|+++++||||| |||.-.-+++..++.+++++ +||.+.++++.. .++++|.+-.+|+|+++-
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999 99999999999999999885 389999998853 589999999999999873
No 78
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-49 Score=317.24 Aligned_cols=199 Identities=26% Similarity=0.360 Sum_probs=170.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|++..+++|+||++++| +++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|++|+
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHHHhheEEecCC
Confidence 468999998888999999999999 9999999999999999999999998 699999999887432 245679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+.+...... ....+....+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred CcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999999988654431 22333456788999999999888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
|+ ||+.++..+.++|++++++. .+|+++.+... + .+|++|++++.|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99 99999999999999997543 27999988654 3 467888887654
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.9e-48 Score=315.50 Aligned_cols=194 Identities=26% Similarity=0.336 Sum_probs=165.5
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~ 73 (212)
++++++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... .+++.++
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIG 82 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheE
Confidence 46899999 467899999999999999999999999999999999999988 699999999987532 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|++|++.+++.+|+.||+.+..... ..........+.++++.+++.+..++.+.+||||||||++|||||+.+|+++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 83 VVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred EEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999999999999999998865432 1223344567889999999998889999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKEL 198 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g 198 (212)
||||||+ ||+.++..+.++|++++++. .+|+++++... + .+|++|
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 9999999 99999999999999987543 37999888653 3 245454
No 80
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-48 Score=317.60 Aligned_cols=196 Identities=26% Similarity=0.324 Sum_probs=165.5
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------cc-
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------MV- 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~~- 69 (212)
++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.... ++
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNERAKLRN 82 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhHHHHHHH
Confidence 4688999964 4699999999999999999999999999999999999998 6999999999875321 12
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|++|++.+++.+|++||+.+....+ .....+....+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 56999999999998999999998865432 122333455678999999999888999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCe
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGL 200 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~ 200 (212)
|++|||||||+ ||+.++..+.++|++++++ . .+|+++.+..++ .+|++|++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 99999999999 9999999999999999754 2 379998775443 35666665
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-48 Score=329.20 Aligned_cols=206 Identities=21% Similarity=0.242 Sum_probs=174.4
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~ 68 (212)
++++++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPETGNKNLKKL 83 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence 3789999974 4699999999999999999999999999999999999999 69999999998742 123
Q ss_pred cceEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 69 ~~~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
++.++|+||++. .+..+|+.||+.++...+ .....+...++.++++.+|+. ...++++.+||||||||++|||||
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 457999999973 233579999998765432 123445566789999999997 688999999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|++|||||||+ ||+.++..+.++|++++++. .+|+++.+... + .+|++|++++.|+++++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999 99999999999999997543 27999988664 3 478899999999988764
No 82
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=329.46 Aligned_cols=206 Identities=20% Similarity=0.263 Sum_probs=177.1
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
++++++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-ESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHHhhceE
Confidence 4689999964 4599999999999999999999999999999999999999 699999999988532 34567999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+||++. .++..||.||+.++.... +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.+|++|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999974 677789999998865432 2344455667899999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.++..++++|++++++ + .+|+++.+..++ .+|++|+++.+|+++++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999 9999999999999999765 3 279998875433 478899999999988764
No 83
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.2e-48 Score=322.70 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=177.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------------
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------------- 65 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--------------- 65 (212)
++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 8 VIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccccccccccccccchH
Confidence 47899999988899999999999999999999999999999999999988 69999999988742
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-CCCCCCCChHHHHHHHHH
Q psy8250 66 -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALA 143 (212)
Q Consensus 66 -~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqrqRv~lA 143 (212)
..+++.++|+||++.+++.+|++||+.++..... .....+...++.++++.+|+.+.. ++++.+||||||||++||
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1234679999999999999999999987442111 123344566788999999998764 888999999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+.+|+++||||||+ ||+.+++.+.++|++++++. .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999 99999999999999997643 27999988764 3 478899999999988764
No 84
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-48 Score=329.09 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=175.8
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~ 68 (212)
++++++.|+. +.+|+||||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ...
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~ 82 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQKEIKPV 82 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEECccccccccHHHH
Confidence 4688999963 2599999999999999999999999999999999999999 69999999998742 124
Q ss_pred cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.+||+||++ .+++ .|+.+|+.|+.... +.+..+...++.++++.+++. ...++.+.+||||||||++||||
T Consensus 83 ~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 83 RKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 56799999987 4554 59999999875432 234455667889999999996 57899999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+.+|++|||||||+ ||+.++..++++|+++++++ .|||++.+... + .+|++|+++++|+++++.+
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999 99999999999999997643 27999988653 3 4789999999999998753
No 85
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-48 Score=338.84 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=178.0
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE----eCCcc---c----ccce
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL----EVEKN---L----MVKV 71 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~----~~~~~---~----~~~~ 71 (212)
++.+.|+...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+ ++... . .++.
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-SRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 456789999999999999999999999999999999999999999998 6999999996 33221 1 1257
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
++|+||++.+++.+|+.||+.++.... +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999876432 23445566788999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..+.+.|.+++.+ + .|||++++... + .+|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999 9999999999999999765 2 27999998664 3 578999999999998874
No 86
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-48 Score=320.01 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=177.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .++.++|+|
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 46899999888899999999999999999999999999999999999998 6999999999874321 234699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
|++.+++.+|+.||+.++...... ..........++.++++.+|+.+..++++.+|||||+||++|||||+.+|+
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~ 163 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK 163 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999885431100 001123345678899999999988899999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..++++|++++... .+|+++.+... + .++++|+++..|+++++.
T Consensus 164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 164 LLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 999999999 99999999999999997632 37999988764 3 478899999999988764
No 87
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.3e-48 Score=321.68 Aligned_cols=208 Identities=24% Similarity=0.286 Sum_probs=178.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--------------
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------------- 66 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------------- 66 (212)
++++++.|++..+++|+||+|++|++++|+||||||||||+++|+|++.| ++|+|.++|.++...
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccccccchhH
Confidence 47899999888899999999999999999999999999999999999998 699999999887421
Q ss_pred --cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250 67 --LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 67 --~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
.+++.++|++|++.+++..|+.||+.+..... ...........+.++++.+|+.+..++.+.+|||||+||++|||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 23567999999999999999999998753211 11233344567889999999998899999999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|+++||||||+ ||+.++..++++|+++.++ . .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999 9999999999999998764 2 27999887553 3 4788999999999888753
No 88
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-48 Score=332.67 Aligned_cols=208 Identities=18% Similarity=0.231 Sum_probs=178.6
Q ss_pred CcccccccC----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----
Q psy8250 1 METFHPLFG----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---- 66 (212)
Q Consensus 1 ~~~l~~~~~----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---- 66 (212)
++++++.|+ ...+++||||+|++||++||+||||||||||+++|+|++.| ++|+|.++|+++...
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~ 86 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEA 86 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHH
Confidence 468888885 24699999999999999999999999999999999999988 699999999998532
Q ss_pred --cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHH
Q psy8250 67 --LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 67 --~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~ 141 (212)
.+++.++||||++ .+++.+|+.+++......+. .....+...++.++++.+|+. ...++++.+|||||+||++
T Consensus 87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~ 164 (327)
T PRK11308 87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA 164 (327)
T ss_pred HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH
Confidence 2356799999998 57888999999887654431 234455667889999999996 4679999999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH---HHHHHhcCeeecCCchhhhc
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV---DALLKELGLLKCRPADELNR 211 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||+.+|++||+||||+ ||+.++.+++++|++++++ . +|||++.+... ..+|++|++++.|+++++.+
T Consensus 165 iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 165 IARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999 9999999999999999775 2 37999988764 35789999999999988753
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3e-48 Score=314.19 Aligned_cols=195 Identities=24% Similarity=0.287 Sum_probs=166.1
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~ 73 (212)
++++++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheE
Confidence 4689999964 6799999999999999999999999999999999999988 699999999987532 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|++|++.+++.+|+.||+.++..... ....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTIL 158 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999988654321 233444567889999999998889999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG 199 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~ 199 (212)
||||||+ ||+.++..+.++|++++++. .+|+.+.+... + .+|++|+
T Consensus 159 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999 99999999999999986543 27999887653 3 2455554
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.9e-48 Score=316.31 Aligned_cols=197 Identities=20% Similarity=0.257 Sum_probs=168.9
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEE
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~ 73 (212)
++++++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 82 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIG 82 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheE
Confidence 46899999 667899999999999999999999999999999999999988 699999999987431 1356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|++|++.+++.+|+.||+.+..... .....+....+.++++.+++.+..++.+.+||||||||++|||||+.+|++|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 83 MIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred EEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998888999999998865432 1233344556788999999998889999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCee
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLL 201 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~ 201 (212)
||||||+ ||+.+++.++++|++++.+. .+|+++.+... + .+|++|+++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999 99999999999999997643 37999988764 3 367788764
No 91
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-48 Score=331.73 Aligned_cols=209 Identities=17% Similarity=0.215 Sum_probs=176.7
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC---CCceEEEECCEeCCcc---c---
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGLEVEKN---L--- 67 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p---~~~G~I~~~g~~~~~~---~--- 67 (212)
++++++.|+. ..+|+||||+|++||++||+||||||||||+++|+|++.| .++|+|.++|+++... .
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~ 85 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 4789999976 4699999999999999999999999999999999999873 1589999999998532 1
Q ss_pred -ccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHH
Q psy8250 68 -MVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 68 -~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~ 141 (212)
+++.++|+||++ .+++.+|+.+++......+. +....+..+++.++++.+|+.+ ..++++.+|||||||||+
T Consensus 86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 224699999998 47888999998876554331 2234556678899999999964 568999999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||+.+|++||+||||+ ||+.++.+++++|++++++. .|||++.+... + .+|++|++++.|+++++.+
T Consensus 164 iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9999999999999999999 99999999999999998752 37999988664 3 5889999999999988753
No 92
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-48 Score=313.70 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=160.8
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999987 7899999999999999999999999999999999999998 699999999987532 245679999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+|++. .++.+|+.||+.+..... ..........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99975 366789999998754332 12233445568889999999988899999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
|||||+ ||+.++..++++|++++.++ .+|+++.+...
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 999999 99999999999999997643 37999988663
No 93
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-48 Score=319.73 Aligned_cols=206 Identities=20% Similarity=0.266 Sum_probs=176.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------~~~~~~ 71 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRN 83 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhh
Confidence 36889999888899999999999999999999999999999999999988 69999999998631 123467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
++|+||++.+++.+|+.||+.+.. ... +....+....+.++++.+|+.+..++.+.+||||||||++|||||+.+|
T Consensus 84 i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 84 VGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred eEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999997532 221 1223344567889999999998899999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+++||||||+ ||+.++..++++|+++++++ .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 9999999999 99999999999999987643 27999988653 3 468899999999988764
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-48 Score=327.91 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=174.4
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~ 68 (212)
++++++.|++ +.+|+||||+|++|++++|+||||||||||+++|+|++.| ++|+|+++|.++.. ..+
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHH
Confidence 4689999963 3699999999999999999999999999999999999998 69999999998843 134
Q ss_pred cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.+||+||++ .+++ .|+.||+.++.... +....+...++.++++.+|+. +..++++.+||||||||++||||
T Consensus 84 ~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 84 RKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 56799999987 3454 59999998865432 233445566788999999997 67889999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|+++||||||+ ||+.++..+.++|++++.+ + .+|+++.+... + .+|++|++++.|+++++.
T Consensus 160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999 9999999999999999754 2 27999987654 3 478899999999988754
No 95
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.2e-48 Score=335.59 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=174.7
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEEE
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGFV 75 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~v 75 (212)
++++.|+++.+ ++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccchhhCCeEEE
Confidence 68899987654 99999999999999999999999999999999998 699999999987421 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+|+.+|++||+.++.... ...+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllL 155 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM 155 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999998865321 1223455688999999999999999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.++..++++|++++++ . .||+++++... + .+|++|+++..|+++++.+
T Consensus 156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999 9999999999999999765 2 37999988664 3 4788999999999988764
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-48 Score=321.29 Aligned_cols=209 Identities=19% Similarity=0.249 Sum_probs=176.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .+..++|+|
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGGTILLRGQHIEGLPGHQIARMGVVRTF 86 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CcceEEECCEECCCCCHHHHHhcCeEEec
Confidence 46899999888899999999999999999999999999999999999998 6999999999875421 234589999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc-------ccC---C--CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKM-------DRN---L--HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~-------~~~---~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
|++.+++.+|+.||+.++..... ... . ...+....+.++++.+|+.+..++++.+||||||||++|||
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 99999999999999998542110 000 0 11223456788999999998899999999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+|++|||||||+ ||+.++..++++|.+++++ + .+|+++.+... + .++++|+++..|+++++.
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 167 CMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999 9999999999999999764 3 27999988664 3 478899999999988764
No 97
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=326.85 Aligned_cols=206 Identities=21% Similarity=0.279 Sum_probs=176.5
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEE
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v 75 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+++.++|+
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIV 82 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEE
Confidence 468999995 56799999999999999999999999999999999999998 69999999998843 2345679999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+|++. .++..|+.||+.+..... ........+.+.++++.+|+.+..++++.+||+||+||++|||||+.+|+++|
T Consensus 83 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 83 FQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99985 366689999998765432 22344555678899999999999999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|++++.++ .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999 99999999999999997643 279999875443 478899999999988764
No 98
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.2e-48 Score=313.81 Aligned_cols=196 Identities=28% Similarity=0.395 Sum_probs=166.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v 75 (212)
++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...++.++|+
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEE
Confidence 46899999888899999999999999999999999999999999999998 69999999998742 1235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+|++.+++.+|+.||+.++..... .....+..+.+.++++.+|+.+..++++.+|||||+||++|||||+.+|+++||
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999988643211 123334456788999999999888999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG 199 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~ 199 (212)
||||+ ||+.++..+.++|++++++. .+|+.+.+... + .+|++|+
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999 99999999999999997643 27999887653 2 3555654
No 99
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-48 Score=326.25 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=177.1
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~ 74 (212)
++++++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcchHHHHHhhEEE
Confidence 478999996 57799999999999999999999999999999999999998 69999999998741 134567999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+||++. .++..|++||+.+..... +.+..+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999973 334579999998764422 2334455567899999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||+ ||+.++..++++|++++.+ + .+|+++.+... + .+|++|++++.|+++++.+
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999 9999999999999999764 2 27999988753 3 4788999999999888653
No 100
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-48 Score=320.59 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=171.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++..+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....++|++|++.
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~--~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEG--PGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCC--CCCcEEEEeCCCc
Confidence 46899999888899999999999999999999999999999999999998 69999999998753 2345899999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.||+.+..... .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred cCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999899999998764432 12333445678899999999988899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCc
Q psy8250 161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPA 206 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~ 206 (212)
||+.++..+.++|++++.+ . .+|+++.+... + .+|+ +|+++..++.
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999998543 2 37999988664 3 3666 4888877643
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-48 Score=327.00 Aligned_cols=206 Identities=21% Similarity=0.265 Sum_probs=177.3
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++++++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEE
Confidence 4689999964 5699999999999999999999999999999999999999 699999999988542 345679999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
||++. +++..|+.||+.++.... .....+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99983 667789999998865432 22344556678999999999999999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|++++.+ . .+|+++.+..++ .++++|++++.|+++++.
T Consensus 164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999 9999999999999999865 2 269999886543 478899999999988764
No 102
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.1e-48 Score=314.16 Aligned_cols=200 Identities=25% Similarity=0.313 Sum_probs=165.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++. ..++.++|++|++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~--~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFGKPLE--KERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCccHH--HHHhheEEeccccc
Confidence 57899999888899999999999999999999999999999999999998 6999999998764 24567999999987
Q ss_pred CC--CCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 81 TV--DTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 81 ~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++ +.+|+.||+.+....... .........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 63 347999999875432110 001112345578899999999988899999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
||+ ||+.++..+.++|++++++. .+|+++++... + .+|++| +++.|
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999 99999999999999987543 37999988664 3 356554 55543
No 103
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-48 Score=323.13 Aligned_cols=206 Identities=17% Similarity=0.231 Sum_probs=174.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v 75 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...++.++|+
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 82 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGLLALRQQVATV 82 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CccEEEECCEEcccccCCHHHHHhheEEE
Confidence 46899999888899999999999999999999999999999999999998 69999999998742 1234679999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
||++.. ++..++.+|+.++.... +....+....+.++++.+|+.+..++++.+||||||||++|||||+.+|++||
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999753 34568999998764332 12333445567889999999988899999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|.+++.+. .+|+++.+... + .+|++|++++.|+++++.
T Consensus 160 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999 99999999999999997543 27999988653 3 478899999999988764
No 104
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-48 Score=317.16 Aligned_cols=205 Identities=16% Similarity=0.274 Sum_probs=174.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|++
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 36889999888899999999999999999999999999999999999998 699999999987542 1345799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++.+++.+|+.+|+.+..... ........+.++++.+ ++.+..++++.+||||||||++|||||+.+|+++||
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999899999998754211 1122334567778888 577777889999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.++..+.++|++++++. .+|+++++... + .+|++|+++..|+++++.+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999 99999999999999987643 27999887664 3 4788999999999988753
No 105
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-48 Score=321.39 Aligned_cols=195 Identities=23% Similarity=0.250 Sum_probs=169.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++. .+++.++|++|++.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~--~~~~~i~~v~q~~~ 91 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPLA--EAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEHH--HhhCceEEEecCcc
Confidence 46899999988899999999999999999999999999999999999998 6999999998763 24567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|++||+.+... . ....++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 92 l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 92 LLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred CCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 9988999999987421 0 123467889999999988999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCch
Q psy8250 161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPAD 207 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~ 207 (212)
||+.++..+.++|.++..+ . .+||.+.+... + .+|++|+++.+++.+
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998653 2 37999887654 3 467899998888654
No 106
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.4e-48 Score=316.16 Aligned_cols=203 Identities=19% Similarity=0.260 Sum_probs=173.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 47899999988899999999999999999999999999999999999998 6999999999875321 245699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++.+++.+|+.+|+.++...+. .. ....+.++++.++ +.+..++++.+|||||+||++|||||+.+|+++||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999987654321 11 1234567788886 56778999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..++++|.+++.+ . .+|+++.+... + .++++|+++..|+++++.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999 9999999999999998764 2 27999988764 3 478899999999988874
No 107
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=322.70 Aligned_cols=206 Identities=23% Similarity=0.321 Sum_probs=175.9
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ..+++.++|+|
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 84 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVF 84 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheEEEe
Confidence 368999995 45699999999999999999999999999999999999998 69999999998753 23456789999
Q ss_pred CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++. .+...|+.+|+.+..... ........+.+.++++.+++.+..++.+.+||||||||++|||||+.+|++|||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred cCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9974 344679999998754322 223444556788999999999889999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..++++|++++.+ . .+|+++.+... + .+|++|++++.|+++++.
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999 9999999999999999765 2 27999988654 3 478899999999998874
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-48 Score=329.40 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=173.9
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---------
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--------- 66 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--------- 66 (212)
++++++.|++ ..+|+||||+|++|+++||+||||||||||+++|+|+++| ++|+|+++|.++...
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEccccccccccccc
Confidence 4688999964 3599999999999999999999999999999999999998 699999999886421
Q ss_pred ----------cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCC
Q psy8250 67 ----------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLS 133 (212)
Q Consensus 67 ----------~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS 133 (212)
.+++.++|+||++ .+++ .|++||+.++.... ..+..+...++.++++.+|+. ...++.+.+||
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 2456799999997 4555 59999998865322 223445566788999999996 67899999999
Q ss_pred hHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 134 GGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 134 gGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
||||||++|||||+.+|++|||||||+ ||+.++..++++|.+++.++ .+|+++.+... + .+|++|+++..|
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999 99999999999999987643 27999987653 3 478899999999
Q ss_pred Cchhhh
Q psy8250 205 PADELN 210 (212)
Q Consensus 205 ~~~~~~ 210 (212)
+++++.
T Consensus 259 ~~~~~~ 264 (320)
T PRK13631 259 TPYEIF 264 (320)
T ss_pred CHHHHh
Confidence 998764
No 109
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-48 Score=333.19 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=172.5
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEE
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFV 75 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v 75 (212)
++++.|+++.+ |+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++.. ...++.++|+
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccchhhCCEEEE
Confidence 67899987543 89999999999999999999999999999999998 69999999998742 1235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+|+.+|++||+.++... ...+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLL 152 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999875321 1245678999999999999999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.++..++++|++++++ . +|||.+++... + .+|++|+++..|+++++..
T Consensus 153 DEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 153 DEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999 9999999999999998765 2 37999988664 3 4788999999999998864
No 110
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-48 Score=320.35 Aligned_cols=209 Identities=23% Similarity=0.317 Sum_probs=176.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+||
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQ 83 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence 46899999988899999999999999999999999999999999999988 69999999998743 233456999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++.+|++||+.++.... .............+.++++.+++.+..++++.+|||||+||++|||||+.+|++||||
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 998888899999998752110 0001111234456788999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..+.++|++++.+. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999 99999999999999987643 27999988664 3 478899999999888763
No 111
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=317.83 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=175.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc---ccccceEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK---NLMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~---~~~~~~i~ 73 (212)
++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.++
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 85 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQ 85 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEE
Confidence 36899999888899999999999999999999999999999999999874 159999999998743 23456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
|+||++.+++.+|+.||+.++...... .....+..+.+.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 86 ~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 164 (250)
T PRK14247 86 MVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ 164 (250)
T ss_pred EEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999999886543211 012334456788999999985 357889999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+++||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 165 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 165 PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999 99999999999999986532 27999987653 3 478899999999988764
No 112
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.3e-47 Score=313.09 Aligned_cols=201 Identities=22% Similarity=0.278 Sum_probs=165.8
Q ss_pred CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
++++++.|++. .+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRK 82 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhc
Confidence 46899999765 799999999999999999999999999999999999988 699999999987531 2456
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHH-HHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250 71 VSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERART-VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 71 ~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.++|++|++ .+++.+|+++|+.+....... . ........ +.++++.+++. ...++++.+||||||||++|||||
T Consensus 83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred cEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 799999998 466789999999876443211 1 11122222 35889999995 678999999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
+.+|++|||||||+ ||+.++..+.++|++++.+ . .+|+++.+... + .+|++|+++..|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999 9999999999999999764 2 27999988653 3 467888876543
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-47 Score=313.65 Aligned_cols=198 Identities=27% Similarity=0.303 Sum_probs=167.1
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~ 69 (212)
++++++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .+
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRA 87 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeeEEECCEEcccCCHHHHHHHHh
Confidence 4688999975 3599999999999999999999999999999999999988 6999999999875321 13
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|++|++.+++.+|+.||+.+..... ........+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998754332 122344556788999999999888999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeee
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLK 202 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~ 202 (212)
|+++||||||+ ||+.++..++++|++++.+ + .+||.+.+..++ .+|++|++++
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999 9999999999999999754 2 279998775433 3567777653
No 114
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.9e-47 Score=319.48 Aligned_cols=207 Identities=17% Similarity=0.229 Sum_probs=174.6
Q ss_pred CcccccccC---------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----
Q psy8250 1 METFHPLFG---------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----- 66 (212)
Q Consensus 1 ~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----- 66 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~ 83 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDRKQR 83 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCHHHH
Confidence 468899995 35799999999999999999999999999999999999998 699999999987532
Q ss_pred -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHH
Q psy8250 67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~l 142 (212)
.+++.++|+||++ .+++.+|+.||+.+...... .........++.++++.+|+. ...++++.+||||||||++|
T Consensus 84 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1345799999997 46678999999987543211 122334456788999999996 67899999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+.+|++|||||||+ ||+.++..++++|++++++ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999999999999999 9999999999999998764 2 37999988654 3 478899999999988874
No 115
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-48 Score=321.98 Aligned_cols=209 Identities=20% Similarity=0.283 Sum_probs=176.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|++|
T Consensus 14 i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred EeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 46889999888899999999999999999999999999999999999988 69999999998742 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++.+|+.+|+.+....... ..........++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98888889999999875321100 00111233456789999999988889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..++++|.+++.+ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999 9999999999999999754 2 27999988654 3 478899999999888764
No 116
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.1e-47 Score=314.83 Aligned_cols=209 Identities=20% Similarity=0.210 Sum_probs=173.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~ 74 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|++ +| ++|+|.++|+++... . .+..++|
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CcceEEECCEecCCCCHHHhhccceEe
Confidence 478999998888999999999999999999999999999999999995 56 699999999987532 1 2334899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcc-c---CCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMD-R---NLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII 148 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~ 148 (212)
++|++.+++.+|+.+|+.+....... . .....+..+++.++++.+++. ...++++. +||||||||++|||||+.
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999875432110 0 012223345688999999997 46778887 599999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|+++||||||+ ||+.++..++++|++++++. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 162 EPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999 99999999999999997643 37999988653 3 368899999999988664
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=319.58 Aligned_cols=206 Identities=25% Similarity=0.310 Sum_probs=175.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+++.++|++|
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQ 83 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence 46899999988899999999999999999999999999999999999988 69999999998743 223467999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh------hCCC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI------IVQS 151 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~------~~p~ 151 (212)
++.+++.+|++||+.+...... .........+.++++.+++.+..++.+.+||||||||++|||||+ .+|+
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 9988888999999987543211 112233456788999999998889999999999999999999999 5999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHH-hhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLK-MDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~-~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..+.++|++++ +.. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999 99999999999999987 332 27999988654 3 478899999999888764
No 118
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=317.72 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=175.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|+ ++|+|+++|+++.. ..+++.
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRRE 86 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhc
Confidence 368999998888999999999999999999999999999999999998762 49999999998741 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++.+|+.||+.+....+.. ..........+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 87 i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14267 87 VGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA 165 (253)
T ss_pred eeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999876543211 012334445678899999984 3578889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 27999987653 3 478899999999988874
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=318.41 Aligned_cols=206 Identities=19% Similarity=0.322 Sum_probs=173.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 94 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKN 94 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhh
Confidence 36889999888899999999999999999999999999999999999874 259999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ +|++||+.+....+ +.+.......+.++++.+++. +..++++.+|||||+||++|||||+
T Consensus 95 i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 95 VGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred EEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999998887 89999998865432 123334455678899999883 4578899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|+++++.. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999 99999999999999986532 37999988664 3 478899999999988874
No 120
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.3e-47 Score=327.94 Aligned_cols=209 Identities=18% Similarity=0.227 Sum_probs=176.8
Q ss_pred CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc---c---c
Q psy8250 1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN---L---M 68 (212)
Q Consensus 1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~---~---~ 68 (212)
++++++.|+ ...+++||||+|++||++||+|+||||||||+++|+|+++|. ++|+|.++|.++... . +
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 468899994 356999999999999999999999999999999999999872 399999999998532 1 1
Q ss_pred -cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHHH
Q psy8250 69 -VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 69 -~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~l 142 (212)
++.++||||++ .+++.+|+.+++.+....+. .....+...++.++++.+++.+ ..++++.+|||||+|||+|
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 24799999998 67889999999987654432 2344555677899999999964 3578999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+.+|++||+||||+ ||+.++..++++|++++++. .|||++.+... + .+|++|++++.|+++++.+
T Consensus 173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999 99999999999999998752 37999988764 3 5889999999999988753
No 121
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=321.91 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=175.3
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... .+++.++|+
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-QSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCcCCHHHHhcceEEE
Confidence 468899995 46799999999999999999999999999999999999998 699999999988532 345679999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+|++. .++.+|++||+.+..... .....+....+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99974 567789999998764322 12333445678899999999999999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|++++.++ .+|+.+.+..++ .+|++|+++..|+++++.
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHh
Confidence 999999 99999999999999987642 279998775333 368899999999888764
No 122
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-47 Score=321.63 Aligned_cols=205 Identities=19% Similarity=0.198 Sum_probs=172.2
Q ss_pred CcccccccCC-----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccc
Q psy8250 1 METFHPLFGD-----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~ 68 (212)
++++++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.. ...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccCHHHH
Confidence 3688999964 3699999999999999999999999999999999999998 69999999998743 123
Q ss_pred cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.++|+||++ .+++ .|+.||+.+..... .....+....+.++++.+++. ...++++.+||||||||++||||
T Consensus 84 ~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 84 RKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 56799999997 3454 69999998765432 123334455678899999997 46789999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.++..+.++|++++++. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999 99999999999999987643 37999988654 3 478899999999988764
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=317.64 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=173.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|. ++|+|+++|+++.. ...++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK 89 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence 468999998888999999999999999999999999999999999999862 48999999998742 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC----ccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL----LKCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl----~~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ +|++||+.++..... ..........+.++++.+++ .+..++++.+||||||||++|||||+
T Consensus 90 i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 90 IGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred eEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999999988875 899999988654321 11233445667888999987 34578899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999996432 37999988664 3 478899999999988874
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.7e-47 Score=318.15 Aligned_cols=209 Identities=23% Similarity=0.265 Sum_probs=176.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++|++|
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 46899999988999999999999999999999999999999999999998 699999999987532 23456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++.+|+.||+.++.... ........+..+++.++++.+++.+..++++.+|||||+||++|||||+.+|+++|||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 998888899999998753211 0001111233456889999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..+.++|++++++. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 163 EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999 99999999999999997643 26999988653 3 478899999999988764
No 125
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.9e-47 Score=305.46 Aligned_cols=184 Identities=28% Similarity=0.351 Sum_probs=160.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---c----cccceEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---N----LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~----~~~~~i~ 73 (212)
++++++.|+++.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. . ..++.++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCee
Confidence 57999999988899999999999999999999999999999999999998 69999999998531 1 2346799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|++|++.+++.+|++||+.+..... ........+++.++++.+|+.+..++++.+||+||+||++|||||+.+|+++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999998865432 1233445567889999999998899999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA 188 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~ 188 (212)
||||||+ ||+.++..++++|+++.++. .+|+.+.+
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999 99999999999999987543 27998754
No 126
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=316.23 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=172.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCc-----ccccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEK-----NLMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~-----~~~~~ 70 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.. | ++|+|.++|+++.. ..+++
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~~ 87 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR-VEGEILLDGENIYDPHVDVVELRR 87 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCC-CceEEEECCEEccccccCHHHHhh
Confidence 4689999988889999999999999999999999999999999999864 4 59999999998742 12356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHH
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.++|++|++.+++ .|+.||+.+....... .......+++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 88 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 88 RVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred cEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999998887 5999999886543211 123344567888999999843 46888999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|++|||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999 99999999999999996532 37999988653 3 478899999999988764
No 127
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=327.69 Aligned_cols=210 Identities=15% Similarity=0.162 Sum_probs=173.2
Q ss_pred Cccccccc----CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC---CCceEEEECCEeCCcc---c---
Q psy8250 1 METFHPLF----GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGLEVEKN---L--- 67 (212)
Q Consensus 1 ~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p---~~~G~I~~~g~~~~~~---~--- 67 (212)
++++++.| +...+++||||+|.+||++||+||||||||||+++|+|++.| .++|+|+++|+++... .
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 46899999 445799999999999999999999999999999999999863 1589999999988532 1
Q ss_pred -ccceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccC---CCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHH
Q psy8250 68 -MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRN---LHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERK 138 (212)
Q Consensus 68 -~~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrq 138 (212)
+++.++||||++. +++.+|+.+++.+......... ....+...++.++++.+||.+ ..++++.+|||||+|
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q 165 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ 165 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 1346999999985 5788999999976432211000 011234567889999999974 468999999999999
Q ss_pred HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchh
Q psy8250 139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADE 208 (212)
Q Consensus 139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~ 208 (212)
||+|||||+.+|++||+||||+ ||+.++.+++++|++++++. +|||++.+..+. .+|++|++++.|++++
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~ 245 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKE 245 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999 99999999999999998752 379999987643 4889999999999888
Q ss_pred hh
Q psy8250 209 LN 210 (212)
Q Consensus 209 ~~ 210 (212)
+.
T Consensus 246 i~ 247 (330)
T PRK15093 246 LV 247 (330)
T ss_pred HH
Confidence 74
No 128
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=320.84 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=176.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||
T Consensus 10 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 88 (265)
T PRK10253 10 GEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred EEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence 46899999988899999999999999999999999999999999999988 699999999987432 23456999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++.+|+++|+.+....... ...........+.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999889999999864211100 00011233456789999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..++++|.+++++ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999 9999999999999998764 2 27999987664 3 478899999999988764
No 129
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-47 Score=320.59 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=175.1
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~ 74 (212)
++++++.|+ .+.+++|+||+|.+||+++|+||||||||||+++|+|+++| .+|+|+++|.++.. ..+++.++|
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 82 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSLLEVRKTVGI 82 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEECccccchHHHHHhheEE
Confidence 468999996 46799999999999999999999999999999999999988 69999999998742 123567999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+||++. .+...|+.||+.+..... .....+...++.++++.+++.++.++++.+|||||+||++|||||+.+|+++
T Consensus 83 v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 83 VFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred EeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999973 334579999998754321 1234445567889999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.++..++++|++++++. .+|+++.+... + .+|++|+++++|+++++.
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999 99999999999999997643 27999988754 3 478899999999988864
No 130
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-47 Score=308.46 Aligned_cols=197 Identities=24% Similarity=0.344 Sum_probs=165.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++. .|+||++.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 468999998654 399999999999999999999999999999999998 699999999987532 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.+...... . ........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 80 ~~~~~~tv~enl~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred ccCCCCcHHHHHhccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999987533111 1 11234556889999999998889999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKC 203 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~ 203 (212)
+ ||+.++..++++|++++.+ . .+|+++.+... + .+|++|+++..
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9 9999999999999998754 2 27999988653 3 46778887654
No 131
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=322.82 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=176.0
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc---cccceE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN---LMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~---~~~~~i 72 (212)
++++++.|++ +.+++++||+|.+|+++||+||||||||||+++|+|+++| ++ |+|.++|.++... ..++.+
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p-~~g~~G~i~i~g~~~~~~~~~~~~~~i 86 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP-DDNPNSKITVDGITLTAKTVWDIREKV 86 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-CCCCCcEEEECCEECCcCCHHHHHhhe
Confidence 4688999964 4699999999999999999999999999999999999988 46 9999999998542 235679
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 73 GFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 73 ~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
||+||++. +++..|++||+.+..... .....+..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|+
T Consensus 87 g~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 87 GIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999984 567789999998754332 23344556678899999999999999999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..+.++|++++.+ . .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 9999999999999999764 2 279998875433 478899999999988764
No 132
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.7e-47 Score=309.96 Aligned_cols=199 Identities=19% Similarity=0.287 Sum_probs=172.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .+.++|+||++.
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~-~~~~~~~~q~~~ 80 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKD-LHKIGSLIESPP 80 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccc-cccEEEEcCCCC
Confidence 46899999888899999999999999999999999999999999999988 6999999999875332 246899999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|++||+.+...... .. ...+.++++.+|+.+..++++.+||+||+||++||||++.+|+++||||||+
T Consensus 81 ~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~ 153 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN 153 (223)
T ss_pred ccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 9998999999987654321 11 2457889999999988999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADE 208 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~ 208 (212)
||+.++..++++|++++.++ .+|+.+.+... + .+|++|++...|++++
T Consensus 154 ~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999997543 27999988654 3 4688999999888764
No 133
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-47 Score=318.88 Aligned_cols=210 Identities=22% Similarity=0.322 Sum_probs=175.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc--------cccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN--------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~--------~~~~ 70 (212)
++++++.|+++.+|+++||++.+|++++|+||||||||||+++|+|+++|+ .+|+|+++|.++... ..++
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 86 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA 86 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHh
Confidence 468999999889999999999999999999999999999999999999873 259999999987431 2245
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
.++|+||++.+++.+|+++|+.+....... ..........++.++++.+|+.+..++.+.+||+|||||++||||
T Consensus 87 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 166 (262)
T PRK09984 87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARA 166 (262)
T ss_pred heEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHH
Confidence 689999999999999999999875321000 001112345578899999999888899999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.++..+.++|++++.+ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 241 (262)
T PRK09984 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFD 241 (262)
T ss_pred HhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999 9999999999999999754 2 37999987654 2 478899999999988863
No 134
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=318.75 Aligned_cols=210 Identities=20% Similarity=0.288 Sum_probs=179.9
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CC---CceEEEECCEeCCcc------
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GD---VDGQILLNGLEVEKN------ 66 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~---~~G~I~~~g~~~~~~------ 66 (212)
++||+.+|.. ..+++||||++++||++||+|+|||||||+.++|+|+++ |. .+|+|.|+|+++...
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~ 83 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR 83 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence 4788888853 469999999999999999999999999999999999997 42 479999999987431
Q ss_pred -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250 67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV 140 (212)
Q Consensus 67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv 140 (212)
.+.+.|+|+||+| .+.|.+|+.+.+......+.... .+++..+++.++|+.+|+.+ ..+.+|++|||||||||
T Consensus 84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV 162 (316)
T COG0444 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV 162 (316)
T ss_pred hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence 1346799999997 57788999999887776543210 35667888999999999974 67999999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
.||.||+.+|++||+||||+ ||+..+.+++++|++++++. .|||+..++..+ .+|+.|++++.|+++++-
T Consensus 163 ~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 163 MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 99999999999999999999 99999999999999999864 389999887753 589999999999998874
Q ss_pred c
Q psy8250 211 R 211 (212)
Q Consensus 211 ~ 211 (212)
.
T Consensus 243 ~ 243 (316)
T COG0444 243 K 243 (316)
T ss_pred c
Confidence 3
No 135
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=321.97 Aligned_cols=206 Identities=18% Similarity=0.259 Sum_probs=175.4
Q ss_pred CcccccccCC------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccc
Q psy8250 1 METFHPLFGD------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~ 70 (212)
++++++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhh
Confidence 4689999963 4699999999999999999999999999999999999998 69999999998853 22456
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 71 VSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 71 ~i~~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
.++|+||++. .+...|+.+|+.|..... +....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 7999999974 233469999998865432 223445566789999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+++||||||+ ||+.++..++++|++++++ + .+|+++.+..++ .+|++|+++..|+++++.
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999 9999999999999999754 3 279999876543 478899999999988864
No 136
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=314.99 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=172.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+||
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 84 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDVIDLRRKIGMVFQ 84 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence 46889999888899999999999999999999999999999999999998 69999999998743 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++ .|+.||+.+..... . ....++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 85 ~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 156 (241)
T PRK14250 85 QPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD 156 (241)
T ss_pred Cchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 998886 69999988653321 1 1134577899999996 5788999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.+++.+.++|++++++ + .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 157 EPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999 9999999999999998764 2 27999987654 3 478899999999988774
No 137
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-47 Score=316.92 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=173.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|++. | +++|+|.++|.++.. ..+++.
T Consensus 16 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 95 (260)
T PRK10744 16 VRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAK 95 (260)
T ss_pred EEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcc
Confidence 4688999988889999999999999999999999999999999999986 2 159999999998742 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ .|+++|+.+...... .....+..+++.++++.+++. +..++++.+|||||+||++|||||+
T Consensus 96 i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 96 VGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred eEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 999999998887 799999987654321 123344456788999999974 4578889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 173 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999996432 27999987654 3 478899999999988764
No 138
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=345.75 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=178.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCccc----ccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNL----MVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~----~~~~i~~v 75 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| +++|+|+++|.++.... .++.++|+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 46899999988899999999999999999999999999999999999885 25999999999885321 24569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+++.+|++||+.++...+............++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999998864322101112334456788999999998889999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
||||+ ||+.++..++++|.+++++. .+||++.+... + .+|++|+++..|+++++
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999 99999999999999997543 37999988764 3 47889999999988765
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-47 Score=321.29 Aligned_cols=206 Identities=18% Similarity=0.236 Sum_probs=171.8
Q ss_pred CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--------cc
Q psy8250 1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------NL 67 (212)
Q Consensus 1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--------~~ 67 (212)
++++++.|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHH
Confidence 46899999764 499999999999999999999999999999999999998 69999999998731 12
Q ss_pred ccceEEEEcCCCCC-CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 68 MVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 68 ~~~~i~~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
+++.++|++|++.. +...|+.||+.+..... ..........+.++++.+++. ...++++.+||||||||++||||
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 35679999999732 23459999998764322 123334445678899999994 67899999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.++..++++|++++++ . .+|+++.+... + .+|++|+++..|+++++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999 9999999999999998754 2 27999987654 3 478899999999988764
No 140
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=345.77 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=178.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c-ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L-MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~-~~~~i~~v~ 76 (212)
+++++++|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++| ++|+|.++|.++... . .++.++|+|
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 85 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-DAGSILYLGKEVTFNGPKSSQEAGIGIIH 85 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 46899999988899999999999999999999999999999999999998 699999999987432 1 245699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++.+++.+|++||+.++...+.. ......+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999886432110 1122334456788999999999888999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..++++|++++.+. .+||++.+... + .+|++|+++..|+++++.
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999 99999999999999997653 27999988764 3 478899999999887653
No 141
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-47 Score=315.48 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=174.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+++||+|++|++++|+||||||||||+++|+|++.| +++|+|.++|.++.. ..+++.
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~ 86 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRT 86 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcc
Confidence 47899999888899999999999999999999999999999999999864 159999999998742 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++.+|++||+.+....+. ........+.+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 87 i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 87 IGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred eEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987654321 112334456778899999984 4678889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH------hcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK------ELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~------~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|++++... .+|+++.+... + .+|+ +|++++.|+++++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999 99999999999999986432 37999988654 3 3454 79999999988763
No 142
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.9e-47 Score=316.87 Aligned_cols=208 Identities=18% Similarity=0.286 Sum_probs=174.3
Q ss_pred CcccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cc
Q psy8250 1 METFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LM 68 (212)
Q Consensus 1 ~~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~ 68 (212)
+++++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~ 85 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYR 85 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhH
Confidence 4689999962 4699999999999999999999999999999999999998 699999999987531 22
Q ss_pred cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.++|+||++. +++.+|+.+++.+...... ........+.+.++++.+|+. ...++++.+||||||||++||||
T Consensus 86 ~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 86 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 456999999975 5677899999987654321 122334456788999999994 67788899999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+.+|+++||||||+ ||+.+++.+.++|.+++++ . .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 164 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 164 LILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 999999999999999 9999999999999999764 2 27999988764 3 4688999999999887753
No 143
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-47 Score=309.70 Aligned_cols=207 Identities=26% Similarity=0.316 Sum_probs=178.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++... ..++.++|++|++
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcceEEEeccc
Confidence 47899999888899999999999999999999999999999999999998 699999999988542 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.+|+.+....+. .........+.++++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 82 ~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred ccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99989999999987654321 223344557788999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+.++..++++|++++++ . .+|+.+.+... + .++++|++...|+++++.+
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9 9999999999999999764 2 26999887654 3 4778999999998887653
No 144
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=304.96 Aligned_cols=209 Identities=24% Similarity=0.331 Sum_probs=188.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++|.|+++.+++++|++|++|.+++|+|||||||||||.+++.++.+ ++|+|+++|.++.. ..+.+.++.+-|
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999998 69999999999854 356778899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
+..+...+||+|-+.|+..-+ .++....+.+..+.++++.++|.+..+++..+||||||||..||+.++++.+.++|||
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred hchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 998889999999999975432 3444567788899999999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|.+ ||.....+++++|++++++.+ .||+++|..+ + ..+++|+++..|+||++-+
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999 999999999999999998753 6999999654 4 4688999999999999743
No 145
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-47 Score=315.61 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=173.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| +++|+|+++|+++.. ..+++.
T Consensus 22 ~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (267)
T PRK14235 22 ARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRAR 101 (267)
T ss_pred EEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhc
Confidence 36899999988899999999999999999999999999999999999874 259999999998742 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++. |+.||+.+....+.. ..........+.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 102 i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 179 (267)
T PRK14235 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA 179 (267)
T ss_pred eEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999999988875 999999876543211 0122334566788999999953 467889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.+++.+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 180 VSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 27999988664 3 468899999999988763
No 146
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=312.44 Aligned_cols=208 Identities=23% Similarity=0.336 Sum_probs=174.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++ |. ++|+|+++|.++.. ...++.
T Consensus 7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~ 86 (252)
T PRK14256 7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR 86 (252)
T ss_pred EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhcc
Confidence 4789999988889999999999999999999999999999999999985 31 48999999998742 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++.+|+.||+.+...... .....+...++.++++.+++.. ..++.+.+||||||||++|||||+
T Consensus 87 i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 87 VGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred EEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987544321 1123334556788999999853 567889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999997643 26999988654 3 478899999999988764
No 147
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-47 Score=318.95 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=175.9
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
++++++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVWNLRRKIGM 85 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEECCcCCHHHHhcceEE
Confidence 3689999974 3499999999999999999999999999999999999998 699999999987532 34567999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
++|++. .++..|+.||+.++.... .....+..+++.++++.+|+.+..++++.+|||||+||++|||||+.+|++|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 86 VFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred EEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999984 567789999998764322 1233444567889999999998899999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.++..++++|++++++ + .+|+++.+..++ .+|++|+++..|+++++.
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999 9999999999999999765 2 279999876433 478899999999988864
No 148
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-47 Score=312.20 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=173.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|++. | ++|+|+++|+++... ..++.++|
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 83 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK-IDGLVEIEGKDVKNQDVVALRKNVGM 83 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-CceEEEECCEecccCCHHHHhhhEEE
Confidence 4789999998889999999999999999999999999999999999874 5 699999999988532 34567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
+||++.+++ .|++||+.++...+... ........++.++++.+++. +..++++.+||||||||++|||||+.+|
T Consensus 84 ~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 84 VFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998887 69999998865432110 01233445678899999995 3467889999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+++||||||+ ||+.++..+.++|.+++... .+|+++.+... + .+|++|++++.|+++++.
T Consensus 162 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 162 KLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999 99999999999999986532 27999987653 3 478899999999988764
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-47 Score=318.16 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=175.9
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+++.++|+
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v 88 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFEKLRKHIGIV 88 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheeEE
Confidence 3688999975 3599999999999999999999999999999999999998 69999999998743 2345679999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+|++. +++..|+.+|+.+..... ........+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++|
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99985 677789999998764422 12334445678899999999988999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||+ ||+.++..++++|++++++ + .+|+.+.+..++ .+|++|+++..|+++++.+
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999 9999999999999998754 2 269998876543 4788999999999888643
No 150
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-47 Score=305.70 Aligned_cols=193 Identities=26% Similarity=0.303 Sum_probs=165.1
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEE
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFV 75 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v 75 (212)
+|+|+|+++.+ |+||++++ ++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 68999998766 99999999 99999999999999999999999998 69999999988742 1234579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+|++.+++.+|+.+|+.+..... .......++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999998764321 1223445688999999999888999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
||||+ ||+.+++.+.++|++++++ . .+|+.+.+... + .+|++|++++.|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999 9999999999999999765 2 27999988654 3 467788887654
No 151
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.3e-46 Score=313.29 Aligned_cols=208 Identities=19% Similarity=0.197 Sum_probs=173.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-----CCcc---c----c
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-----VEKN---L----M 68 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-----~~~~---~----~ 68 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ +... . .
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~~~~~~~~~~~~ 87 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLYALSEAERRRLL 87 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccccCCHHHHHHHh
Confidence 46899999888899999999999999999999999999999999999998 69999999987 5431 1 2
Q ss_pred cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.++|+||++. +++.+|+.+|+.+...... ..........+.++++.+++. +..++.+.+||||||||++||||
T Consensus 88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred hcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 346999999974 5677899999876432211 111223455678999999997 47889999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+.+|++|||||||+ ||+.++..++++|++++.+ + .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999 9999999999999998764 2 27999988753 3 4788999999999888753
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-47 Score=343.61 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=177.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+++|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|.++.... .++.++|+|
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 86 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYNKLDHKLAAQLGIGIIY 86 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-CccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence 36899999988899999999999999999999999999999999999998 6999999999885321 235699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc-ccC---CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKM-DRN---LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
|++.+++.+||+||+.++..... ... ....+...++.++++.+|+.+..++++.+|||||||||+|||||+.+|++
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 166 (510)
T PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV 166 (510)
T ss_pred ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999987432110 001 12234456788999999999889999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
|||||||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|+++..|+++++
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999 99999999999999997653 27999988764 3 47889999999988775
No 153
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-46 Score=307.77 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=168.2
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcccccceEE
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~~~~~~i~ 73 (212)
++++++.|.+ +.+++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|.++.....++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-~~G~i~~~g~~~~~~~~~~~i~ 84 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-TSGQILFNGQPRKPDQFQKCVA 84 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-CceEEEECCEECChHHhcccEE
Confidence 4688899954 579999999999999999999999999999999999998 7 6999999999886444567799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHH-HHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA-LLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
|+||++.+++.+|+.||+.+..................+.+ +++.+++.+..++.+.+||+||+||++|||||+.+|++
T Consensus 85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i 164 (226)
T cd03234 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164 (226)
T ss_pred EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999998654322111112222334555 89999999888999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchH-HHHHHH-H--HHHHhcCeeecC
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHV-ERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~-~~~~~~-~--~~l~~g~~~~~~ 204 (212)
+||||||+ ||+.++..++++|++++++. .+|+. +.+... + .+|++|++++.|
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999 99999999999999987643 26987 455543 3 478899887654
No 154
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.7e-46 Score=308.97 Aligned_cols=207 Identities=27% Similarity=0.346 Sum_probs=178.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|+|+||++.+|++++|+||||||||||+++|+|+++| .+|+|.++|.++... ..++.++|+||++
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 46899999988899999999999999999999999999999999999988 699999999987542 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.+....+. .......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 82 ~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred hhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999987654321 223334456789999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+.++..++++|.+++.+ . .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9 9999999999999998764 2 27999887653 3 4788999999999888754
No 155
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-46 Score=308.15 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=176.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++. +++|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++|++
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 46889999765 89999999999999999999999999999999999998 699999999987542 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.+..... .....+....+.++++.+++.+..++++.+|||||+||++|||||+.+|+++||||||
T Consensus 81 ~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 9999999999998764332 1223445556788999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+ ||+.++..++++|++++.+ + .+|+++.+... + .+|++|+++..|+++++.
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9 9999999999999998764 2 27999887654 3 467899999999887764
No 156
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.6e-46 Score=304.41 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=168.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+. .+.|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++... ..++.++|++|++
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQEN 79 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEcccCChhccceEEEeccC
Confidence 4789999974 56899999999999999999999999999999999998 699999999987532 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.+...... . .......++.++++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 80 ~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 80 NLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999987543211 1 11223456788999999998899999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRP 205 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~ 205 (212)
+ ||+.++..+.++|.+++++ . .+|+.+.+... + .+|++|++++.|.
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9 9999999999999998754 2 26999887653 3 4678999887764
No 157
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-47 Score=310.03 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=172.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++.. .++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||++
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 80 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhhccEEEEeccc
Confidence 468999997643 499999999999999999999999999999999998 699999999987532 1245699999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+|+.||+.+..... ... ......++.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||
T Consensus 81 ~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 81 NLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred ccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999998753211 111 1234566889999999998999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+ ||+.++..+.++|.+++.+ . .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9 9999999999999998654 2 26999987654 3 468899999999988764
No 158
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5e-47 Score=336.90 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=179.5
Q ss_pred cccccccCC-----------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--c---
Q psy8250 2 ETFHPLFGD-----------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--K--- 65 (212)
Q Consensus 2 ~~l~~~~~~-----------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~--- 65 (212)
+++++.|.. ..+++||||++.+||++||+|+||||||||.|+|+|+..| ++|+|.++|.+.. .
T Consensus 284 ~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~ 362 (539)
T COG1123 284 RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGEL 362 (539)
T ss_pred eeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchh
Confidence 577888762 3689999999999999999999999999999999999999 7999999998732 1
Q ss_pred ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHH
Q psy8250 66 NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 66 ~~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~l 142 (212)
...++.+-++||+| .+.|.+||.+++......+.. ....+.++++.++++.+|+.+ .++++|++||||||||++|
T Consensus 363 ~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI 440 (539)
T COG1123 363 RRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI 440 (539)
T ss_pred hhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence 12455678889987 578999999999988776532 224566678999999999976 7999999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+.+|++||+||||| ||+..+.+++++|++++++. .+||+..++..+ .+|++|+++..|+.+++-+
T Consensus 441 ARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 441 ARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 999999999999999999 99999999999999999874 379999998753 4899999999999888753
No 159
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-47 Score=294.89 Aligned_cols=200 Identities=26% Similarity=0.340 Sum_probs=174.9
Q ss_pred cccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 2 ETFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 2 ~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
.+++.+|+++. +|+|+|++|.+||.++++|||||||||||++++|+..| ..|+|.++|++++.... ..|.|||++
T Consensus 7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-~~G~i~l~~r~i~gPga--ergvVFQ~~ 83 (259)
T COG4525 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGA--ERGVVFQNE 83 (259)
T ss_pred hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-ccceEEECCEeccCCCc--cceeEeccC
Confidence 46788898776 99999999999999999999999999999999999999 69999999999975432 248999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.++|.+++.+|+.|+.+++ ++.+.+..+.+.+++..+|+.+..++++-+||||||||+.|||||+.+|++|+||||+
T Consensus 84 ~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred ccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 9999999999999999876 4667888889999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHH--hcCeeecCCch
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLK--ELGLLKCRPAD 207 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~--~g~~~~~~~~~ 207 (212)
. ||.-+++++.++|-++-++ + +||+++++--. + .+|. .|++++.-+++
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9 9999999999998886544 2 38999988543 2 2444 67776665554
No 160
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=339.56 Aligned_cols=208 Identities=21% Similarity=0.225 Sum_probs=177.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-DSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 57899999988899999999999999999999999999999999999998 699999999987532 2345699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+||.||+.+.............+..+++.++++.+++....++++.+|||||||||+|||||+.+|++||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99988999999999987532110000123344567889999999998889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
|||+ ||+.++..++++|++++.+. .+||++++... + .+|++|+++..|+++++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999 99999999999999997653 37999988764 3 47889999999987765
No 161
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=312.51 Aligned_cols=207 Identities=20% Similarity=0.322 Sum_probs=173.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|++. |. ++|+|+++|+++.. ..+++.
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 94 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKN 94 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence 4689999988889999999999999999999999999999999999986 31 48999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |++||+.+...... .....+...++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 95 i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 95 IGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred eEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988875 99999987644321 112334455678899999985 3468889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|.+++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999 99999999999999987532 27999987664 3 478899999999998874
No 162
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=310.65 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=171.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC---CCCC-CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR---IQGD-VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~---~~p~-~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+ .+|. ++|+|.++|+++.. ...++.
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 85 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKN 85 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhh
Confidence 46889999888899999999999999999999999999999999997 3331 38999999998753 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ .|+.||+.+....+.. .........+.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 86 i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 86 VGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred eEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 5999999876543211 112234456788999999853 568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|+++++.. .+|+++.+... + .+|++|++++.|+++++.
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999 99999999999999986432 27999987654 3 478899999999988874
No 163
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=310.23 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=172.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-C---CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-D---VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~---~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+++|+||+|++||+++|+||||||||||+++|+|+.+| + ++|+|+++|+++.. ...++.
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 85 (250)
T PRK14240 6 VKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKR 85 (250)
T ss_pred EEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhcc
Confidence 46899999888899999999999999999999999999999999998753 1 48999999998753 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ +|+++|+.+....... .......+.+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 86 i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 86 VGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred EEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 999999998887 8999999886543211 12334456778889999874 4568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..++++++.
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 163 VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 27999987664 3 478899999999988764
No 164
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-46 Score=297.49 Aligned_cols=176 Identities=24% Similarity=0.342 Sum_probs=149.4
Q ss_pred cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----cccceEEEEcCCCC-C
Q psy8250 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-T 81 (212)
Q Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-----~~~~~i~~v~Q~~~-~ 81 (212)
|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... .+++.++|++|++. .
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 4667899999999999999999999999999999999999998 699999999987421 23457999999973 2
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
++..|++||+.+..... .....+..+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 33579999998764322 12333445678899999999988999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250 161 VDTLTVHEHMTLMARLKMDR-----NLHHVER 187 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~~-----~~h~~~~ 187 (212)
||+.+++.+.++|+++++++ .+|+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999997643 2688764
No 165
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=313.35 Aligned_cols=206 Identities=20% Similarity=0.304 Sum_probs=171.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCcc-----cccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEKN-----LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~~-----~~~~ 70 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.. | ++|+|.++|+++... .+++
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~-~~G~i~~~g~~i~~~~~~~~~~~~ 102 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR-SEGEILYEGLNILDSNINVVNLRR 102 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCC-CceEEEECCEEcccccccHHHHhc
Confidence 4689999998889999999999999999999999999999999999864 5 699999999987431 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHH
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.++|++|++.+++. |++||+.+...... ..........+.++++.+++. +..++++.+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 103 EIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred cEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 79999999988875 99999987643221 111223345577788888884 456888999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|++|||||||+ ||+.++..+.++|+++++.. .+|+++.+... + .+|++|++++.|+++++.
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999 99999999999999996542 27999887654 3 478899999999988764
No 166
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.8e-47 Score=341.12 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=176.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.... .++.++|++
T Consensus 14 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred EEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 46899999988899999999999999999999999999999999999998 6999999999875321 224699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|++||+.+.... .....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred ccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999875321 1233466889999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|++++.|+++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999 99999999999999997653 37999988664 3 478899999999988764
No 167
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=309.68 Aligned_cols=207 Identities=20% Similarity=0.323 Sum_probs=173.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCcc-----cccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN-----LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~~-----~~~~~ 71 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+.+| +++|+|.++|.++... ..++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKR 86 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhh
Confidence 46899999888899999999999999999999999999999999999864 1589999999987431 23567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ +|++||+.+....... ....+...++.++++.+++. +..++++.+||+|||||++|||||+
T Consensus 87 i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 87 VGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred eEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 8999999876543211 12233445678899999874 4578889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|+++++.. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999 99999999999999987643 27999987664 2 478899999999988874
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=309.89 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=171.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.. |. ++|+|.++|+++.. ..+++.
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKE 87 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhc
Confidence 4688999988889999999999999999999999999999999999853 52 38999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ +|+.||+.+...... ..........+.++++.+++. +..++.+.+||+|||||++|||||+
T Consensus 88 i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 88 IGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred EEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 799999987644321 111223445678889999874 4568899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|++++... .+|+++.+... + .+|++|++++.|+++++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 27999887654 3 478899999999988874
No 169
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-46 Score=309.78 Aligned_cols=209 Identities=19% Similarity=0.314 Sum_probs=172.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCcc-----cccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEKN-----LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~~-----~~~~~ 71 (212)
++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+.. | +++|+|+++|+++... ..++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 87 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAK 87 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhh
Confidence 4688999988889999999999999999999999999999999999975 2 1599999999987421 24567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |+.+|+.+....+. ...........+.++++.+|+.+ ..++.+.+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 88 VGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred EEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999988876 99999987643321 11122334456788999999964 457789999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|++|||||||+ ||+.++..+.+.|++++... .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999 99999999999999986432 27999987653 3 4788999999999888753
No 170
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-47 Score=298.78 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=179.9
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~ 78 (212)
+|++++..++.++++|||++.+||+++|+||||||||||||.|+|.+.| ++|++.++|.+.+. ..+.++.+.+||+
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~ 83 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQN 83 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence 6889999999999999999999999999999999999999999999999 69999999998854 2356677999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC------CCe
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV------QSG 152 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~------p~l 152 (212)
..+-+.+||+|.+.++..-+.. +....+..+.++.+|...++..+..+...+|||||||||.+||+|++- +++
T Consensus 84 s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~ 162 (259)
T COG4559 84 SSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRW 162 (259)
T ss_pred cccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCce
Confidence 8887778999999997654321 112234556688999999999999999999999999999999999984 458
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+|||||| ||...+..++++.+.+..+. +.||++.++.+ + .+|++||++++|+|+++.
T Consensus 163 L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 163 LFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred EEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 89999999 99999999999999998875 37999988765 3 489999999999998875
No 171
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=309.08 Aligned_cols=207 Identities=21% Similarity=0.319 Sum_probs=172.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+.+.+|+++||+|++||+++|+||||||||||+++|+|+++ | +++|+|.++|+++.. ...++.
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE 86 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhcc
Confidence 4689999988889999999999999999999999999999999999986 2 159999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ .|++||+.+....... .........+.++++.+++. ...++++.+|||||+||++|||||+
T Consensus 87 i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 87 VGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred EEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 999999998886 7999999876433211 11223345678899999984 4568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|++++... .+|+++.+... + .+|++|+++..|+++++.
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 27999987664 3 478899999999988764
No 172
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-46 Score=300.41 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=160.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|++|+
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~~~~~~~~~~~~~~ 82 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQGEPIRRQRDEYHQDLLYLGHQ 82 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccchHHhhhheEEeCCc
Confidence 46899999988899999999999999999999999999999999999998 69999999998753 2345678999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+.+....+. . ...+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 83 PGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred cccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999988654321 1 2345678899999998888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
|+ ||+.++..++++|++++++. .+|+.+.+..
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 99 99999999999999987543 2799887744
No 173
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-46 Score=314.46 Aligned_cols=205 Identities=20% Similarity=0.298 Sum_probs=172.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|++.| +++|+|.++|.++.. ..+++.
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~ 121 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR 121 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhcc
Confidence 36889999888899999999999999999999999999999999999862 269999999998742 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |+.||+.+...... ... ....++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 122 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 122 IGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred EEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 9999999988875 99999987654321 122 3345688899999984 4578899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-HH---HHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-DA---LLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~~---~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..+.++|++++++. .+|+++.+... +. ++++|+++..|+++++.
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999997643 37999988764 43 35899999999988764
No 174
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=308.88 Aligned_cols=208 Identities=23% Similarity=0.343 Sum_probs=173.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+++++||++++|++++|+||||||||||+++|+|++.| +++|+|.++|.++.. ..+++.
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~ 85 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKK 85 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhh
Confidence 46899999888899999999999999999999999999999999999873 158999999998743 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ .|++||+.+...... ..........+.++++.+++.. ..++++.+|||||+||++|||||+
T Consensus 86 i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 86 VGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred EEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 999999998887 899999987654321 1122334456788899999853 478899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|+++||||||+ ||+.++..++++|.++++.. .+|+.+.+... + .++++|+++..|+++++.+
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999 99999999999999986532 27999877654 3 4788999999999888753
No 175
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=344.37 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=176.6
Q ss_pred CcccccccC-----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---
Q psy8250 1 METFHPLFG-----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--- 66 (212)
Q Consensus 1 ~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--- 66 (212)
++++++.|+ ...+|++|||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~i~~~~~~ 394 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-QGGEIIFNGQRIDTLSPG 394 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCcEEEECCEECCcCCHH
Confidence 367888885 14699999999999999999999999999999999999998 699999999987531
Q ss_pred ---cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHH
Q psy8250 67 ---LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRV 140 (212)
Q Consensus 67 ---~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv 140 (212)
.+++.++|+||++ .+++.+||.+|+.+....+.. ....+..+++.++|+.+|+. ...++++.+|||||||||
T Consensus 395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 2356799999997 588899999999886543211 12334556788999999996 678999999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||+.+|++|||||||+ ||+.++.+++++|++++++ . .|||++.+...+ .+|++|++++.|+++++.
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999 9999999999999999765 2 279999887643 478899999999998874
No 176
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=314.76 Aligned_cols=208 Identities=21% Similarity=0.236 Sum_probs=173.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC--------ceEEEECCEeCCcc---ccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV--------DGQILLNGLEVEKN---LMV 69 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~--------~G~I~~~g~~~~~~---~~~ 69 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| + +|+|.++|.++... .++
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p-~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG-GGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-cccccccCCceEEEECCEEcccCCHHHHH
Confidence 47899999988999999999999999999999999999999999999988 5 89999999987432 234
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+.++|+||++..++.+|+.||+.+...... .......+....+.++++.+++.+..++++.+|||||+||++|||||+.
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 568999999876667899999987532110 0011112344567889999999988999999999999999999999994
Q ss_pred ---------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 149 ---------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 149 ---------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
+|++|||||||+ ||+.++..++++|++++.+ . .+|+++.+... + .+|++|++++.|+++++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999 9999999999999998765 2 26999988654 3 47889999999998876
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-46 Score=308.56 Aligned_cols=208 Identities=23% Similarity=0.305 Sum_probs=172.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+++|. ++|+|.++|.++.. ..+++.
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhce
Confidence 478999998888999999999999999999999999999999999998762 27999999998742 133567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++.+|+.||+.+....... .......+.+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 87 i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred eEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999875432211 12233345566777777653 4568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..+.++|++++... .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999987532 26999988764 3 478899999999988764
No 178
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-46 Score=286.69 Aligned_cols=198 Identities=27% Similarity=0.317 Sum_probs=172.8
Q ss_pred cccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccc
Q psy8250 2 ETFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVK 70 (212)
Q Consensus 2 ~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~ 70 (212)
+++++..+ ...+|++|++.|++||.++|+|||||||||||-+++|+..| ++|+|.+.|+++... .+.+
T Consensus 10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd~rA~~R~~ 88 (228)
T COG4181 10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDEDARAALRAR 88 (228)
T ss_pred hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHHHHHHhhcc
Confidence 34555543 35699999999999999999999999999999999999999 699999999998542 2457
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
++|||||...+.|+||..||+..+..+... +.......+.++|+.+|+...++.+|.+|||||+|||+|||||+..|
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 899999999999999999999998887642 33455667889999999999999999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHHHH--HHhcCeeec
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVDAL--LKELGLLKC 203 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~~~--l~~g~~~~~ 203 (212)
++||.||||- ||..+-.+|.++|..++.++ +|||...+..+.+. |.+|+++.+
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999 99999999999999998875 37999988887764 558887543
No 179
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-46 Score=309.57 Aligned_cols=207 Identities=19% Similarity=0.280 Sum_probs=172.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||++++|++++|+|+||||||||+++|+|+++|. ++|+|.++|+++.. ..+++.
T Consensus 10 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQ 89 (259)
T ss_pred EEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhh
Confidence 468899998888999999999999999999999999999999999998752 38999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ +|++||+.+...... ..+.......+.++++.+++. +..++++.+||+||+||++|||||+
T Consensus 90 i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 90 IGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred eEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 899999987654321 122334445677889999883 4678899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHH-----hcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLK-----ELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~-----~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|++++... .+|+++.+...+ .+|+ +|+++..|+++++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999 99999999999999987542 379999887643 3665 59999999998874
No 180
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=313.16 Aligned_cols=205 Identities=19% Similarity=0.273 Sum_probs=169.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~ 95 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhc
Confidence 46899999988899999999999999999999999999999999999862 269999999998742 234567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |++||+.+...... .. ....+.+.++++.+++. +..++++.+||+|||||++|||||+
T Consensus 96 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 96 IGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred eEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988874 99999988654321 11 12344567788888763 4578889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHh-----------cCeeecCCchh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKE-----------LGLLKCRPADE 208 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~-----------g~~~~~~~~~~ 208 (212)
.+|++|||||||+ ||+.++..++++|++++... .+|+++.+...+ .+|++ |++++.|++++
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 9999999999999 99999999999999986532 379998886643 36665 56899999888
Q ss_pred hh
Q psy8250 209 LN 210 (212)
Q Consensus 209 ~~ 210 (212)
+.
T Consensus 251 ~~ 252 (269)
T PRK14259 251 IF 252 (269)
T ss_pred HH
Confidence 74
No 181
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-47 Score=311.13 Aligned_cols=209 Identities=22% Similarity=0.288 Sum_probs=168.5
Q ss_pred CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++. .+++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ...++.++|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-CCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 46889999765 799999999999999999999999999999999999998 69999999988743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+|++.+++ .|++||+.+..................+.++++.+ ++.+..++++.+||+|||||++|||||+.+|+++
T Consensus 82 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 82 SQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred CCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998876 69999998743211000000000111245666666 6777788889999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||+ ||+.++..+.++|+++++.. .+|+++.+..++ .+|++|+++..++++++.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999 99999999999999986532 279998886543 4788999999999888754
No 182
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-46 Score=312.24 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=174.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc----ccccceE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK----NLMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~----~~~~~~i 72 (212)
++++++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.+
T Consensus 24 i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i 103 (276)
T PRK14271 24 AVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRV 103 (276)
T ss_pred EeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhhe
Confidence 46899999988999999999999999999999999999999999999875 259999999998743 1345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+|+||++.+++ .|+++|+.+...... .....+....+.++++.+++.. ..++.+.+|||||+||++|||||+.
T Consensus 104 ~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 104 GMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred EEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999998887 799999987643221 1233344456678899999863 4678899999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|+++||||||+ ||+.+++.+.++|++++.+. .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 181 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 181 NPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999 99999999999999987642 27999987664 3 4788999999999888753
No 183
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-46 Score=310.37 Aligned_cols=207 Identities=21% Similarity=0.297 Sum_probs=173.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCcc-----cccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN-----LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~~-----~~~~~ 71 (212)
++++++.|+++.+|+|+||++.+||+++|+||||||||||+++|+|+++| +++|+|.++|.++... ..++.
T Consensus 23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 102 (267)
T PRK14237 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKH 102 (267)
T ss_pred EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcc
Confidence 46899999888999999999999999999999999999999999999863 2699999999987421 23567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++ .|++||+.++..... ..........+.++++.+++. +..++++.+|||||+||++|||||+
T Consensus 103 i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 103 IGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred eEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 599999988644321 112334456678899999984 4578899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|++++... .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999 99999999999999996432 27999887653 3 478899999999988773
No 184
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.6e-47 Score=311.99 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=165.6
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 4688999963 5699999999999999999999999999999999999998 69999999998743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
||++.+++ .|+.||+.+..................+.++++.+ ++....++++.+|||||||||+|||||+.+|+++
T Consensus 82 ~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 82 LQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred cCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99988765 69999998643210000000000111234556665 5666678889999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||+ ||+.++..+.++|++++... .+|+++.+..++ .+|++|+++..|+++++..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999 99999999999999986422 279999875433 4788999999999887753
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1e-45 Score=304.15 Aligned_cols=195 Identities=21% Similarity=0.246 Sum_probs=163.5
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc-CCCCCC
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTV 82 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~-Q~~~~~ 82 (212)
+.|+.+.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|++ |.+.++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 445667899999999999999999999999999999999999998 69999999987632 23456799998 557788
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V 161 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l 161 (212)
+.+|+.||+.+....+. ....+....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+ |
T Consensus 108 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 108 WDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 88999999987654321 2233445567889999999988899999999999999999999999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 162 DTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
|+.++..+.++|.+++++ . .+|+.+++... + .+|++|++++.|
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999764 2 37999987664 2 467788876654
No 186
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-46 Score=313.51 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=171.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCcc-----cccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEKN-----LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~~-----~~~~~ 71 (212)
++++++.|++..+|+|+||+|.+|++++|+||||||||||+++|+|+.. | +++|+|.++|.++... .+++.
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~ 121 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhc
Confidence 4688999988889999999999999999999999999999999999854 3 1699999999987421 24567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++. |+.||+.+....+.. .+.......+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 122 i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 122 IGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred EEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999988875 999999986543211 12223345677888998873 4678889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|++++... .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999 99999999999999987542 37999988664 3 478899999999988764
No 187
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-46 Score=307.16 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=172.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|. .+|+|+++|.++.. ..+++.
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKR 86 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhce
Confidence 468999998888999999999999999999999999999999999999873 15999999998742 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |+.||+.+....+.. .........+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 87 i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 87 VGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred EEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988875 999999876543211 11222345567788888864 4578899999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|+++||||||+ ||+.++..+.++|+++++.. .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999 99999999999999986422 27999988764 3 4788999999999887743
No 188
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.1e-45 Score=302.90 Aligned_cols=192 Identities=24% Similarity=0.293 Sum_probs=162.0
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 93 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~ 93 (212)
|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++..... ..+|++|++.+++.+|+.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999998 69999999998754222 24899999999999999999987
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHH
Q psy8250 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTL 172 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~ 172 (212)
+..... ......+....+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+ ||+.++..+.++
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 632111 122334445668899999999988999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 173 MARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 173 l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
|.+++++ . .+|+++.+... + .+|++|+++..|+...+
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9998764 2 27999987664 3 47889999888876443
No 189
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-46 Score=307.03 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=172.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc----ccccceE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK----NLMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~----~~~~~~i 72 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|. ++|+|.++|.++.. ...++.+
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 85 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKV 85 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhe
Confidence 368999999888999999999999999999999999999999999998751 48999999998742 2345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+|+||++.+++ .|+.||+.+...... ........+++.++++.+++. +..++++.+|||||+||++|||||+.
T Consensus 86 ~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 86 GMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred eEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 99999998887 799999987643221 112233345677888888874 45678899999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|+++||||||+ ||+.++..++++|++++++. .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 163 EPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999 99999999999999997642 27999987764 3 478899999999988764
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-46 Score=341.91 Aligned_cols=207 Identities=17% Similarity=0.217 Sum_probs=174.8
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----------c-
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----------K- 65 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~----------~- 65 (212)
++++++.|+. ..+++||||+|++|+++||+||||||||||+++|+|+++| .+|+|.++|..+. .
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-~~G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-AGGLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCeEEEECCEEeccccccccccccC
Confidence 4689999962 4699999999999999999999999999999999999998 6999999987441 0
Q ss_pred --c---cc-cceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCCh
Q psy8250 66 --N---LM-VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSG 134 (212)
Q Consensus 66 --~---~~-~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSg 134 (212)
. .. ++.+|||+|++ .+++.+||.||+.+....+. ..+..+..+++.++++.+|+.+ ..++++.+|||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 0 11 24699999998 67888999999998765421 2344555678899999999953 57899999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 135 GERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 135 GqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
||||||+|||||+.+|++|||||||+ ||+.++.+++++|++++++ + +|||++.+... + .+|++|++++.|
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g 251 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccC
Confidence 99999999999999999999999999 9999999999999999765 2 37999988764 3 478999999999
Q ss_pred Cchhhh
Q psy8250 205 PADELN 210 (212)
Q Consensus 205 ~~~~~~ 210 (212)
+++++.
T Consensus 252 ~~~~~~ 257 (623)
T PRK10261 252 SVEQIF 257 (623)
T ss_pred CHHHhh
Confidence 888763
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-45 Score=306.65 Aligned_cols=207 Identities=18% Similarity=0.186 Sum_probs=170.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-----CCccc-------c
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-----VEKNL-------M 68 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-----~~~~~-------~ 68 (212)
++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ +.... +
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELYQLSEAERRRLM 84 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccccCCHHHHHHhh
Confidence 46899999888899999999999999999999999999999999999988 69999999976 43211 2
Q ss_pred cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHH
Q psy8250 69 VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 69 ~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
++.++|++|++. +++.+|+.+|+.+...... ..........+.++++.+++. ...++.+.+||||||||++||||
T Consensus 85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 346899999974 4456789999875432111 011123346778999999997 47899999999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.+++.++++|.++..+ + .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999 9999999999999998654 2 37999988753 3 478899999999888764
No 192
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.4e-45 Score=306.36 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=170.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcccc-cceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKNLM-VKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~~~-~~~i~~v~ 76 (212)
++++++.| ++.+|+++||++++|++++|+||||||||||+++|+|+++|. ++|+|+++|+++..... ++.++|+|
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~ 85 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIM 85 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEe
Confidence 46889999 567999999999999999999999999999999999998871 48999999998854332 35699999
Q ss_pred CCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 77 QHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 77 Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
|++. +.+.+|+.+++.+...... ... ....+.++++.+++.+ ..++.+.+|||||+||++|||||+.+|+
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 86 QNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred cCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 9974 4466799998876433221 111 2356889999999976 5688999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|||||||+ ||+.++..++++|++++++ + .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999 9999999999999998764 2 37999987654 3 4788999999999888743
No 193
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=306.06 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=172.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC--C--CceEEEECCEeCCcc-----cccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--D--VDGQILLNGLEVEKN-----LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~--~~G~I~~~g~~~~~~-----~~~~~ 71 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+..+ + ++|+|.++|+++... ..++.
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 88 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRK 88 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhce
Confidence 46899999988899999999999999999999999999999999998752 1 389999999987531 23567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++. |++||+.+....+.. .........+.++++.+++. +..++.+.+||+|||||++|||||+
T Consensus 89 i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 89 IGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred EEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999988875 999999986543311 12233445677888988874 3468889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|+++++.. .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999 99999999999999987542 26999888653 3 478899999999988875
No 194
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=309.25 Aligned_cols=208 Identities=22% Similarity=0.293 Sum_probs=173.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~ 107 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRR 107 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhcc
Confidence 36889999888899999999999999999999999999999999999873 259999999998753 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++. |++||+.+....... .........+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 108 i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 108 VGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred EEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999999988886 999999876543211 12223345678889999885 3568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|+++||||||+ ||+.++..++++|+++++.. .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999 99999999999999997542 27999887653 3 4788999999999887653
No 195
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.8e-46 Score=334.18 Aligned_cols=209 Identities=17% Similarity=0.214 Sum_probs=175.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCccc----ccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNL----MVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~----~~~~i~~v 75 (212)
++++++.|+++.+|++|||++++|++++|+||||||||||+++|+|+++| +++|+|.++|+++.... .++.++|+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 83 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVII 83 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEE
Confidence 47899999988899999999999999999999999999999999999875 25999999999885321 23569999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCcccc-CCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
||++.+++.+|+.||+.+........ .........++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++|
T Consensus 84 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ll 163 (500)
T TIGR02633 84 HQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLL 163 (500)
T ss_pred eeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998764321100 012334456788999999998654 5779999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
||||||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|+++..++++++
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999 99999999999999997653 27999988764 3 47889999988877654
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-45 Score=297.49 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=160.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.....++.++|++|++.
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCeeEEECCEEccchhhhhceEEeecCcc
Confidence 46899999888899999999999999999999999999999999999998 69999999998864334456899999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.||+.+....+. . .....+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+
T Consensus 93 ~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 93 LKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred cccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9988999999987654321 1 123456788999999988899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
||+.+++.+.++|+++++++ .+|+.+.+...
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 167 NLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence 99999999999999987653 37999887653
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-45 Score=308.29 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=174.1
Q ss_pred CcccccccC---------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-----
Q psy8250 1 METFHPLFG---------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----- 66 (212)
Q Consensus 1 ~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----- 66 (212)
++++++.|+ ++.+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~ 84 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQR 84 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccChhHH
Confidence 468899997 46799999999999999999999999999999999999988 699999999987431
Q ss_pred -cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHH
Q psy8250 67 -LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 67 -~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~l 142 (212)
..++.++|++|++ .+++..|+.+|+.+...... ..........+.++++.+|+. ...++++.+||+||+||++|
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 85 KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 2356799999997 46677899999876443211 123344556789999999997 57899999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+.+|++|||||||+ ||+.++..+.++|++++++ . .+|+.+.+... + .+|++|++++.|+++++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999 9999999999999998764 2 27999988764 3 467899999999888763
No 198
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.9e-46 Score=301.38 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=165.1
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHh
Confidence 4688999974 6799999999999999999999999999999999999988 699999999987431 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
.++|+||++.+++.+|+.+|+.+...... .....+....+.++++.+|+.+..++.+.+||+|||||++|||||+.+|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999999998999999998654321 1233445567889999999998889999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCe
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGL 200 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~ 200 (212)
+++||||||+ ||+.++..++++|++++++ + .+|+.+....++ .+|++|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999 9999999999999998764 2 279987543222 24555543
No 199
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.2e-46 Score=303.39 Aligned_cols=198 Identities=19% Similarity=0.282 Sum_probs=164.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|+++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|+||
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 46899999888899999999999999999999999999999999999988 699999999987532 23567899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
++.+++. |++||+.+....+.. . .....+.++++.+++. ...++++.+||+||+||++|||||+.+|+++|||
T Consensus 89 ~~~l~~~-tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 89 TPTLFGD-TVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred ccccccc-cHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9988874 999999875433211 1 1234577899999996 5789999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHH-HhcCeeecCC
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALL-KELGLLKCRP 205 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l-~~g~~~~~~~ 205 (212)
|||+ ||+.++..+.++|.+++++ + .+|+.+.+..++ .+| +++..+.+|.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 9999 9999999999999998754 2 269998875433 244 3555666665
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=309.61 Aligned_cols=206 Identities=18% Similarity=0.256 Sum_probs=170.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-----CCCceEEEECCEeCCc-----ccccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEK-----NLMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-----p~~~G~I~~~g~~~~~-----~~~~~ 70 (212)
++++++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. ...++
T Consensus 27 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~ 105 (271)
T PRK14238 27 TQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVK-TTGKILYRDQNIFDKSYSVEELRT 105 (271)
T ss_pred EeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCC-CceeEEECCEEcccccccHHHHhh
Confidence 4689999988889999999999999999999999999999999999986 5 69999999998742 12356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC----CccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG----LLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----l~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.++|+||++.+++. |+.||+.++..... ..........+.++++.++ +.+..++++.+||||||||++|||||
T Consensus 106 ~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 106 NVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 79999999988874 99999988654321 1122223445677777775 34567889999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|++|||||||+ ||+.++..+.++|+++++.. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999 99999999999999997532 26999987654 3 478899999999988774
No 201
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.4e-46 Score=328.78 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=180.0
Q ss_pred CcccccccCCc----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcc-------
Q psy8250 1 METFHPLFGDT----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKN------- 66 (212)
Q Consensus 1 ~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~------- 66 (212)
++||++.|... .+++||||++.+||++||+|+|||||||+.++|.|++++. .+|+|.++|.++...
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 46888888543 5999999999999999999999999999999999999873 389999999977321
Q ss_pred cccceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC--CCCCCCChHHHHHHHH
Q psy8250 67 LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN--SVLNVLSGGERKRVAL 142 (212)
Q Consensus 67 ~~~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqrqRv~l 142 (212)
.+.+.|+|+||+|. +.|.+|+.+.+.-....+.. .++++..+++.++|+.+|+.+... ++|++|||||||||.|
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i 165 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI 165 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence 13467999999973 56778999988877766642 347788889999999999976554 4999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|+||+.+|++||+||||+ ||+..+.+|+++|++++++. .|||++.+++.+ .+|++|++++.|++++|-.
T Consensus 166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999 99999999999999998764 389999988753 4899999999999998853
No 202
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-46 Score=334.22 Aligned_cols=204 Identities=20% Similarity=0.217 Sum_probs=173.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|+++... .+++.++|++
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 85 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALAAGVAIIY 85 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 46899999888899999999999999999999999999999999999988 699999999987431 2356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|+.+|+.++............+...++.++++.+|+.+..++++.+||||||||++|||||+.+|++||||
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (501)
T PRK11288 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD 165 (501)
T ss_pred echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999987532111011123344567889999999988889999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRP 205 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~ 205 (212)
|||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|+++..++
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 166 EPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999 99999999999999997653 37999988664 3 4788999877654
No 203
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-46 Score=310.64 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=168.0
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.....++.++|+||++
T Consensus 9 ~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEhHHhhccceEEEecccc
Confidence 368899995 57899999999999999999999999999999999999998 6999999999875322234699999997
Q ss_pred CCC--CCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 80 LTV--DTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 80 ~~~--~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
.+. ...++.+++.+..... .............+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 652 2346888876532100 0001111233456788999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH-H-HHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD-A-LLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~-~-~l~~g~~~~~~~~~~~~ 210 (212)
|||+ ||+.+++.+.++|.+++.++ .+|+++.+...+ . ++.+|+++..|+++++.
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 9999 99999999999999997643 279998876542 2 22389999999988763
No 204
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-45 Score=334.71 Aligned_cols=206 Identities=21% Similarity=0.208 Sum_probs=173.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEEC-------------------
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLN------------------- 59 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~------------------- 59 (212)
+++++++|+++.+|+++||++.+|++++|+||||||||||+++|+|++ .| ++|+|.++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccccccccccccc
Confidence 478999998888999999999999999999999999999999999997 57 69999997
Q ss_pred ----CEeCC-------c------ccccceEEEEcCC-CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC
Q psy8250 60 ----GLEVE-------K------NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 121 (212)
Q Consensus 60 ----g~~~~-------~------~~~~~~i~~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 121 (212)
|.++. . ..+++.++|+||+ +.+++.+|+++|+.+..... ..+..+..+++.++++.+|+
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 22221 0 1134568999997 67888899999998865432 22344556678999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H-
Q psy8250 122 LKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D- 192 (212)
Q Consensus 122 ~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~- 192 (212)
.+..++++.+|||||||||+|||||+.+|++|||||||+ ||+.++..++++|++++++ . ++||.+.+... +
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 988899999999999999999999999999999999999 9999999999999999654 2 37999988654 3
Q ss_pred -HHHHhcCeeecCCchhhh
Q psy8250 193 -ALLKELGLLKCRPADELN 210 (212)
Q Consensus 193 -~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|+++..|+++++.
T Consensus 239 i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEEeCCEEeeecCHHHHH
Confidence 478899999888887753
No 205
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-45 Score=296.66 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=158.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++..+++++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++.....++.++|++|++.
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVAEACHYLGHRNA 83 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeCcchhhHhhcEEecCCCc
Confidence 46899999888899999999999999999999999999999999999988 69999999988642224567899999888
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.+|+.+...... . ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 84 ~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 84 MKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred CCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8888999999987554321 1 12347889999999888889999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
||+.++.+++++|++++++. .+|+.+++..
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 99999999999999986653 2699887754
No 206
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1e-46 Score=348.58 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=172.7
Q ss_pred CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|+.. .+|+|+|++|++||.+||+|+||||||||+|+|+|++.| ++|+|.+||.++.. ..+|+++|||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHHhcCHHHHHhheeEE
Confidence 46899999765 699999999999999999999999999999999999999 69999999999854 4678999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+|++.+|.. |++||+.++.........-.+.....+.+.+..+ |++.........||||||||++|||||+++|++|
T Consensus 553 ~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~IL 631 (709)
T COG2274 553 LQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKIL 631 (709)
T ss_pred cccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 999998877 9999999864322100111112222344445544 4455556667889999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||| ||+.+.+.+.+.|.++.... .+|.+..++.++ .+|++|+++.+|+.+|+.+
T Consensus 632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999 99999999999999998543 379999988776 4899999999999999865
No 207
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=304.09 Aligned_cols=207 Identities=18% Similarity=0.268 Sum_probs=170.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CC--CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GD--VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~--~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+.. |+ ++|+|.++|.++.. ...++.
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence 4689999998889999999999999999999999999999999999864 41 38999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ .|+++|+.+....... .........+.++++.+++. +..++.+.+||+|||||++|||||+
T Consensus 88 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 88 VGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred EEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 6999999876543211 11222234567788888763 4568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|++++.+. .+|+.+.+... + .+|++|+++..|++.++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 165 VKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999 99999999999999987542 27999988654 3 478899999999887764
No 208
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.9e-45 Score=295.68 Aligned_cols=180 Identities=22% Similarity=0.245 Sum_probs=157.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+++++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|++|+
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHhhhheEEeccc
Confidence 47899999988899999999999999999999999999999999999988 69999999988743 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|++||+.+.... ...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 82 ~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 152 (201)
T cd03231 82 PGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152 (201)
T ss_pred cccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9988899999999874321 0235678899999999888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
|+ ||+.+++.++++|++++.+. .+|+.+....
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 99 99999999999999987643 3698665543
No 209
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-46 Score=283.46 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=181.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---------NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---------~~~~~~ 71 (212)
++++++.||..++|-||+|+-++|+.+.++||||||||||+|.++-+..| .+|+..+-|...+- ..+++.
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~lr~~ 83 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDLRRN 83 (242)
T ss_pred EcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999977778 69999998865531 235678
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
+|+|||+..++|.+||.||+..... + ..+.++.+...++.++|+++.+.+++|+.|-.|||||+|||+|||||+++|+
T Consensus 84 vgmvfqqy~lwphltv~enlieap~-k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 84 VGMVFQQYNLWPHLTVQENLIEAPC-R-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hhhhhhhhccCchhHHHHHHHhhhH-H-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 9999999999999999999876432 1 1356777888899999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH---HHHHHhcCeeecCCchh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV---DALLKELGLLKCRPADE 208 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~---~~~l~~g~~~~~~~~~~ 208 (212)
+|++||||+ |||....++.++|++++..+. ||..+.++.. +.+|.+|+++..|+.+-
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999 999999999999999998653 7999998764 34788999999998654
No 210
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=306.91 Aligned_cols=204 Identities=22% Similarity=0.290 Sum_probs=164.2
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|++ +.+++|+||++++|++++|+||||||||||+++|+|+++| .+|+|+++|.++.. ..+++.++|+|
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 4688999975 5699999999999999999999999999999999999988 69999999988743 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHH-----HHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-----RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
|++.+++. |++||+.++.... ...... ..+.++++.+ ++....++++.+||||||||++|||||+.+
T Consensus 84 q~~~~~~~-tv~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 84 QDTFLFSG-TIMENIRLGRPNA-----TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred CCchhhhh-HHHHHHhccCCCC-----CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99988775 9999998642211 111111 1223444444 555556777899999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++||||||+ ||+.++..++++|+++++.. .+|+.+.+..++ .+|++|+++..++.+++.+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999 99999999999999986422 279998875543 4788999999999888764
No 211
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.4e-45 Score=333.41 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=174.2
Q ss_pred CcccccccC-----------CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---
Q psy8250 1 METFHPLFG-----------DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--- 66 (212)
Q Consensus 1 ~~~l~~~~~-----------~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--- 66 (212)
++++++.|+ ++.+|+++||+|++|++++|+||||||||||+|+|+|++ | .+|+|+++|+++...
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~~ 355 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNRR 355 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccchh
Confidence 478899995 357999999999999999999999999999999999988 5 599999999987431
Q ss_pred ---cccceEEEEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHH
Q psy8250 67 ---LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRV 140 (212)
Q Consensus 67 ---~~~~~i~~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv 140 (212)
.+++.++|+||++ .+++.+||.||+.++...+. ...+..+...++.++++.+++. ...++++.+|||||||||
T Consensus 356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 1245699999997 47888999999988654321 0123334456788999999997 578999999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||+.+|++|||||||+ ||+.+++.++++|++++.+ . ++||++.+... + .+|++|++++.|+++++.
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999 9999999999999999764 2 37999988764 3 478899999999988874
No 212
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.9e-46 Score=343.13 Aligned_cols=202 Identities=21% Similarity=0.223 Sum_probs=164.5
Q ss_pred ccccc-ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHP-LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~-~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++ +|+++.+|+|+||+|++|+.+||+||||||||||+++|+|++ | ++|+|.++|.++.. ..+++.++||+|
T Consensus 353 ~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 353 EDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred EeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecC
Confidence 56775 446678999999999999999999999999999999999999 8 69999999998854 356788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHH-----HHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVER-----ARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
+|.+|+. |++||+.++.. ..+.++. ...+.++++.+ |++.........||||||||++|||||+++|
T Consensus 431 ~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 431 NPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred CCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999876 99999998521 1121111 11233444444 4555555566789999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
++|||||||| ||+.+.+.+.+.|.++.+.. .+|+++.+..++ .++++|++++.|+.+++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999 99999999999999986543 379998887665 4788999999999988753
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=304.28 Aligned_cols=208 Identities=17% Similarity=0.262 Sum_probs=173.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||++++|++++|+||||||||||+++|+|+++|. .+|+|.++|+++.. ..+++.
T Consensus 10 ~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (261)
T PRK14258 10 VNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQ 89 (261)
T ss_pred EeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhcc
Confidence 468999998878999999999999999999999999999999999999872 27999999988732 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ .|+.||+.+...... .....+..+.+.++++.+++. +..++++.+|||||+||++|||||+
T Consensus 90 i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 90 VSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred EEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999988887 899999987643221 012233345678899999874 3568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHh-----cCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKE-----LGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~-----g~~~~~~~~~~~~~ 211 (212)
.+|+++||||||+ ||+.++..+.++|++++.+ . .+|+++.+...+ .+|++ |+++..|+++++.+
T Consensus 167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 9999999999999 9999999999999998643 2 379999887643 47888 99999999988753
No 214
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=307.43 Aligned_cols=205 Identities=19% Similarity=0.260 Sum_probs=169.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|++..+|+|+||+|++|++++|+||||||||||+++|+|++.| +++|+|+++|+++.. ...++.
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 92 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRR 92 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhh
Confidence 46899999888899999999999999999999999999999999998752 158999999998742 223567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++ .|+.||+.+...... .. ....+.+.++++.+++. ...++++.+||||||||++|||||+
T Consensus 93 i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 93 IGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred EEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999998887 499999987654321 11 12334566778888874 3567889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHH---------hcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLK---------ELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~---------~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..++++|.++++.. .+|+++.+...+ .+|+ +|++++.|+++++.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999 99999999999999997642 279999887653 3565 79999999998874
No 215
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-45 Score=299.81 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=164.0
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC---CceEEEECCEeCCcccc-cceEEEEcCCCC--CCCCCC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEVEKNLM-VKVSGFVPQHDL--TVDTLT 86 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~---~~G~I~~~g~~~~~~~~-~~~i~~v~Q~~~--~~~~lt 86 (212)
+++|+||++++|++++|+||||||||||+++|+|+++|. ++|+|+++|+++..... ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999999871 49999999998854333 357999999985 556789
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc---cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL---KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD 162 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD 162 (212)
+.+|+.+...... ........++.++++.+++. +..++.+.+|||||||||+|||||+.+|+++||||||+ ||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 9999877543221 11233456788999999997 56889999999999999999999999999999999999 99
Q ss_pred hhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 163 TLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 163 ~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.++..+.++|++++.+ . .+|+++++... + .+|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999998764 2 26999988654 3 478899999999988874
No 216
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4e-45 Score=293.04 Aligned_cols=179 Identities=21% Similarity=0.227 Sum_probs=155.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|++|+
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHhhhheEEeccC
Confidence 46899999988999999999999999999999999999999999999988 699999999987432 234678999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.+|+.+...... . ....+.++++.+++.+..++++.+||||||||++||||++.+|+++|||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred cccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888888999999987644321 1 134578899999999888999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVER 187 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~ 187 (212)
|+ ||+.++..++++|.+++++. .+|+...
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 99 99999999999999986553 2687643
No 217
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-45 Score=295.30 Aligned_cols=182 Identities=21% Similarity=0.228 Sum_probs=158.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|++..+|+++||++++||+++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ...++.++|++|+
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~i~~~~q~ 82 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQSIKKDLCTYQKQLCFVGHR 82 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeeEEECCCccccCHHHHHhheEEeccc
Confidence 47899999888899999999999999999999999999999999999998 69999999988753 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.+|+.+..... . ....+.++++.+++.+..++++.+||+||+||++||||++.+|+++|||||
T Consensus 83 ~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 83 SGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred cccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 98888999999998754211 1 123678899999998878889999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
|+ ||+.++..+.++|++++++. .+|+.+.+...
T Consensus 155 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 155 LVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred CcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 99 99999999999999986543 36987776443
No 218
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=326.41 Aligned_cols=208 Identities=22% Similarity=0.263 Sum_probs=183.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
+++++|+|++.++|++|||++.+||++||+|+||||||||+|+|+|.++| ++|+|+++|+++... ....-|+.|+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-DSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-CCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 57999999999999999999999999999999999999999999999999 699999999998532 2345689999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|+..++|++||.||+.++..... ..-+.++...+++.++|+.+++....+.++.+||.||||.|+|||||..++++|||
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999988655332 22346778888999999999996558999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC-chhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP-ADEL 209 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~-~~~~ 209 (212)
||||+ |+....+.+++++++++.++. +|.++++.+.+ .+|+||+.+.+.+ ..++
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 99999 999999999999999998763 79999998753 4899999998888 3444
No 219
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=304.48 Aligned_cols=207 Identities=22% Similarity=0.314 Sum_probs=172.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC------EeCCc---ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG------LEVEK---NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g------~~~~~---~~~~~~ 71 (212)
++++++.|++..+|+|+||++.+|++++|+||||||||||+++|+|++.| ++|+|.++| .++.. ...++.
T Consensus 13 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-~~G~v~~~G~~~~~g~~~~~~~~~~~~~~ 91 (257)
T PRK14246 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-YDSKIKVDGKVLYFGKDIFQIDAIKLRKE 91 (257)
T ss_pred eeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CcCceeEcCEEEECCcccccCCHHHHhcc
Confidence 47899999999999999999999999999999999999999999999988 587666665 44321 124567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++|++.+++.+|+++|+.++..... .....+....+.++++.+++. +..++.+..||+|||||++|||||+
T Consensus 92 i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred eEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988644321 112334456788999999996 3567889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..+.++|.+++... .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 99999999999999986543 37999988653 3 478899999999988775
No 220
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-45 Score=302.58 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=172.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--C--CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--G--DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p--~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+++|+||+|.+|++++|+||||||||||+++|+|+.. | +++|+|.++|.++.. ...++.
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~ 85 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK 85 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhh
Confidence 4688999988889999999999999999999999999999999999864 2 158999999998743 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |+.+|+.+...... ..........+.++++.+++. ...++++.+||+|||||++|||||+
T Consensus 86 i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 86 VGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred eEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 9999999988875 99999987643221 112233456788899999874 3468889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..+.++|++++... .+|+.+++...+ .++++|+++..|+++++.
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999 99999999999999986532 269999887754 257899999999988874
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-45 Score=332.58 Aligned_cols=206 Identities=22% Similarity=0.233 Sum_probs=172.3
Q ss_pred CcccccccC-----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC-CEe---CCcc-----
Q psy8250 1 METFHPLFG-----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN-GLE---VEKN----- 66 (212)
Q Consensus 1 ~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~-g~~---~~~~----- 66 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++ |.+ +...
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCccccccccchhhH
Confidence 367899994 25699999999999999999999999999999999999988 69999996 542 2211
Q ss_pred -cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----ccCCCCCCCChHHHHHH
Q psy8250 67 -LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----CKNSVLNVLSGGERKRV 140 (212)
Q Consensus 67 -~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~LSgGqrqRv 140 (212)
..++.++|+||++.+++.+|+.||+.+..... .+......++.++++.+++.. ..++++.+|||||||||
T Consensus 361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 12456999999998999999999998754321 123334467889999999974 57899999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||+.+|++|||||||+ ||+.+++.++++|++++++ + .+||++.+...+ .+|++|++++.|+++++.
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999 9999999999999999765 2 379999887643 478899999999998876
Q ss_pred c
Q psy8250 211 R 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 517 ~ 517 (520)
T TIGR03269 517 E 517 (520)
T ss_pred h
Confidence 5
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=306.01 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=169.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|++.|. .+|+|.++|+++.. ..+++.
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~ 102 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhc
Confidence 368899998888999999999999999999999999999999999997531 48999999998742 134567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|+||++.+++. |+.+|+.+...... .. ......+.++++.+++. +..++++.+|||||+||++|||||+
T Consensus 103 i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 103 VGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred EEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999988875 99999987643221 11 12234466778888863 4568889999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH---------hcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK---------ELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~---------~g~~~~~~~~~~~~ 210 (212)
.+|++|||||||+ ||+.++..+.++|.++++.. .+|+.+.+... + .+|+ +|+++..|+++++.
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999 99999999999999997542 27999988764 2 3665 89999999998874
No 223
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=330.78 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=173.3
Q ss_pred CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEE
Q psy8250 1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~ 73 (212)
++++++.|+ ++.+++|+||+|++|++++|+||||||||||+|+|+|+++|+++|+|+++|+++... ..++.++
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 341 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA 341 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE
Confidence 368899993 457999999999999999999999999999999999998832599999999987532 1245689
Q ss_pred EEcCCC---CCCCCCCHHHHHHHHHhhhccc-C-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 74 FVPQHD---LTVDTLTVHEHMTLMARLKMDR-N-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 74 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
|++|++ .+++.+|+.||+.+........ . .........+.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~ 421 (506)
T PRK13549 342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL 421 (506)
T ss_pred EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence 999996 4778899999998753211100 0 12334456788999999996 5789999999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
.+|++|||||||+ ||+.+++.++++|.++++++ .+||++.+... + .+|++|+++..++++++
T Consensus 422 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 422 LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999 99999999999999997654 37999988764 3 47889999999988876
No 224
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.8e-45 Score=296.84 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=159.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+++++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|+++|+++.. ..+...
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~---------~~~~~~ 94 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSL---------LGLGGG 94 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchh---------hccccc
Confidence 35788889899999999999999999999999999999999999999998 69999999987531 111233
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.||+.+...... .........+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4567899999988654321 2233445567889999999988999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecC
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
||+.++..++++|.+++.+. .+|+.+++... + .++++|++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999987653 26999887654 3 467788887654
No 225
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7e-45 Score=336.60 Aligned_cols=209 Identities=30% Similarity=0.490 Sum_probs=176.4
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC-CceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~-~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+++++.|+++.+|+|||+++++||++||+||||||||||+++|+|..+|. .+|+|.+||+++... .++.++||+|++.
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~ 150 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDI 150 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccc
Confidence 46788998889999999999999999999999999999999999998772 389999999987542 3456899999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----CCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----SVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+++.+||+||+.+.+..+.......++..++++++++.+|+.+..+ +.+.+||||||||++||+||+.+|++|||
T Consensus 151 l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 151 LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 9999999999998765442222344455677899999999987654 45678999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHH-HH--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE-RART-VD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~-~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+.++.+++++|+++++++ .+|+++ .+.. .+ .+|++|++++.|+++++.+
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999 99999999999999998653 269876 3443 33 4788999999999988753
No 226
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.6e-45 Score=330.52 Aligned_cols=207 Identities=20% Similarity=0.272 Sum_probs=173.0
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCcc------
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEKN------ 66 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~~------ 66 (212)
++++++.|++ +.+|+++||+|++||++||+||||||||||+|+|+|+++|. ++|+|.++|.++...
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 4688999963 57999999999999999999999999999999999999751 489999999987432
Q ss_pred cc-cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250 67 LM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV 140 (212)
Q Consensus 67 ~~-~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv 140 (212)
.. ++.+||+||++. +++.+++.+++.+..... ...+..+...++.++++.+|+.+ ..++++.+|||||||||
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv 165 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV 165 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence 11 246999999975 567789999987654321 12234455677899999999975 46889999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
+|||||+.+|++|||||||+ ||+.++..++++|++++.+ . +||+++.+... + .+|++|+++..|+++++
T Consensus 166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999 9999999999999999765 2 37999988764 3 47889999999988876
No 227
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.6e-46 Score=305.28 Aligned_cols=202 Identities=20% Similarity=0.281 Sum_probs=162.5
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHHHHhhEEE
Confidence 4688999964 4699999999999999999999999999999999999988 69999999988743 123456999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++|++.+++ .|++||+.+..... ....... .+.++++.+ ++....++++.+||||||||++|||||+
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 82 VSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred ECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh
Confidence 999988776 59999998743211 1111111 123344444 5556677888999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+|+++||||||+ ||+.++..++++|++++ ++ .+|+++.+..++ .+|++|++++.++++++.
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999 99999999999999987 43 279998876433 478899999999887764
No 228
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.3e-44 Score=299.84 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=170.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCEeCCcc---cccc-eEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKN---LMVK-VSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~~~~~~---~~~~-~i~~ 74 (212)
++++++.|+++.+|+++||++++|+++||+||||||||||+++|+|+ ++| ++|+|+++|.++... ...+ .++|
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~ 88 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEERAHLGIFL 88 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCceEEECCEEcccCChhhhheeeEEE
Confidence 46889999888899999999999999999999999999999999998 467 699999999987532 1222 4789
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcc----cCCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMD----RNLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII 148 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~ 148 (212)
++|++.+++.+|+.+++.+....... ......+....+.++++.+++. ...++.+. .|||||+||++|||||+.
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL 168 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence 99999999999999998775432110 0011223345678899999997 46788887 599999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~ 209 (212)
+|+++||||||+ ||+.++..++++|+++++++ .+|+.+.+... + .+|++|++++.|++++.
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 169 DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999 99999999999999987543 27999887653 3 36789999999988743
No 229
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-45 Score=300.39 Aligned_cols=193 Identities=21% Similarity=0.246 Sum_probs=157.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|+++|.++.. ...++.++|+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 3688999975 5699999999999999999999999999999999999988 69999999998743 1234579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC-----------CCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----------LNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqrqRv~lA~ 144 (212)
+|++.+++ .|+.||+.+.... .. ...+.++++.+++.+..++. +.+||||||||++|||
T Consensus 84 ~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 84 PQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred CCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence 99998876 5999998763211 11 23456778888887666654 4699999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCR 204 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~ 204 (212)
||+.+|++|||||||+ ||+.++..++++|++++.+. .+|+.+.+..++ .++++|++++.|
T Consensus 154 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999 99999999999999987542 379998764333 367788876543
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=301.52 Aligned_cols=204 Identities=19% Similarity=0.262 Sum_probs=170.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccceE
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKVS 72 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~i 72 (212)
+.+++.|++..+++|+||++++|++++|+||||||||||+++|+|++.| +.+|+|+++|.++.. ..+++.+
T Consensus 12 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 91 (261)
T PRK14263 12 KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91 (261)
T ss_pred EeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhce
Confidence 5678889988999999999999999999999999999999999999875 159999999998742 1245679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc----ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+|+||++.++ .+|+.||+.+....+. . .......+.++++.+++.+ ..++++.+||+||+||++|||||+.
T Consensus 92 ~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 92 GMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred EEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999877 5899999988654321 1 1233457888999999853 3467788999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHH--------hcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLK--------ELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~--------~g~~~~~~~~~~~~ 210 (212)
+|++|||||||+ ||+.++..++++|+++++.. .+|+++.+... + .+|+ +|++++.|+++++.
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999999999 99999999999999996432 26999987664 3 3563 89999999988874
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=307.66 Aligned_cols=209 Identities=21% Similarity=0.319 Sum_probs=172.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----ccccce
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~~~ 71 (212)
++++++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++| +++|+|.++|.++.. ..+++.
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~ 127 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKR 127 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhc
Confidence 46889999888899999999999999999999999999999999999862 269999999998742 123567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcc---------cCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHH
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMD---------RNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGER 137 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~---------~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqr 137 (212)
++|+||++.+++. |++||+.+....... .... .......+.++++.+++. +..++++.+|||||+
T Consensus 128 i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 206 (305)
T PRK14264 128 VGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ 206 (305)
T ss_pred eEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHH
Confidence 9999999988874 999999986532110 0011 122345678899999874 456888999999999
Q ss_pred HHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-HH---HHHhcCeeecCCchh
Q psy8250 138 KRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-DA---LLKELGLLKCRPADE 208 (212)
Q Consensus 138 qRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~~---~l~~g~~~~~~~~~~ 208 (212)
||++|||||+.+|++|||||||+ ||+.++..++++|++++.+. .+|+++.+... +. +|++|+++..|++++
T Consensus 207 qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDK 286 (305)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHH
Confidence 99999999999999999999999 99999999999999997653 37999988663 42 468999999999887
Q ss_pred hh
Q psy8250 209 LN 210 (212)
Q Consensus 209 ~~ 210 (212)
+.
T Consensus 287 ~~ 288 (305)
T PRK14264 287 IF 288 (305)
T ss_pred HH
Confidence 74
No 232
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.6e-44 Score=293.25 Aligned_cols=186 Identities=22% Similarity=0.248 Sum_probs=155.6
Q ss_pred CcccccccCC-------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC--CE--eCCcc---
Q psy8250 1 METFHPLFGD-------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN--GL--EVEKN--- 66 (212)
Q Consensus 1 ~~~l~~~~~~-------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~--g~--~~~~~--- 66 (212)
++++++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|+++ |. ++...
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~ 82 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPR 82 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHH
Confidence 4789999962 4699999999999999999999999999999999999998 69999998 43 43211
Q ss_pred c----ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHH
Q psy8250 67 L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 67 ~----~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~ 141 (212)
. .++.++|++|++.+++.+|+.||+.+..... ........+.+.++++.+|+.+ ..++++.+||+|||||++
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 1 2346899999999999999999998754322 1223344567788999999976 457899999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
|||||+.+|+++||||||+ ||+.++..+.++|++++.+. .+|+.+.+..
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999 99999999999999997653 2699887754
No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.9e-45 Score=300.43 Aligned_cols=200 Identities=25% Similarity=0.301 Sum_probs=168.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++. .+|+++||++++|++++|+||||||||||+++|+|++ | .+|+|.++|+++... .+++.++|+||
T Consensus 3 ~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 3 LNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-GSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred ccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 3567775 3899999999999999999999999999999999987 5 389999999987532 23456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh-------CC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII-------VQ 150 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~-------~p 150 (212)
++.+++.+|+.+|+.+..... .......+++.++++.+++.+..++++.+||||||||++|||||+. +|
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred cCccCCCccHHHHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 988888899999998753211 1223345678899999999988899999999999999999999998 67
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
++|||||||+ ||+.++..+.++|++++.+. .+|+++.+... + .+|++|+++..|+++++.
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999 99999999999999997643 27999987664 3 478899999999987763
No 234
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=310.21 Aligned_cols=206 Identities=18% Similarity=0.252 Sum_probs=171.0
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC----CCceEEEECCEeCCc-----cccc
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEK-----NLMV 69 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p----~~~G~I~~~g~~~~~-----~~~~ 69 (212)
+++++++|. ...+|+|+||+|++|+++||+||||||||||+++|+|+..+ +++|+|.++|.++.. ..++
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr 162 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR 162 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence 368899994 35699999999999999999999999999999999999852 159999999999852 1346
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHH
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
+.++|+||+|.+++ .|+++|+.|+.... ... .......+.++++.+++. ...++++.+||||||||++|||
T Consensus 163 ~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 163 TRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred ccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 67999999998875 69999999865332 111 222234467888888873 3567889999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART-VD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~-~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+|++|||||||+ ||+.+...+.+.|+++.+.. .+|+++.+.. ++ .+|++|++++.|+++++-
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999 99999999999999987643 3799999876 33 478899999999999974
No 235
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-45 Score=302.46 Aligned_cols=203 Identities=22% Similarity=0.277 Sum_probs=163.3
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+++.++|++
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 468899995 56799999999999999999999999999999999999988 69999999998743 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHH-----HHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-----RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
|++.+++ .|+.||+.+.... ....... ..+.+.++.+ ++....++++.+||+|||||++|||||+.+
T Consensus 82 q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 82 QDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred CCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9998875 6999999874321 1111111 1223344444 555566778899999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+++||||||+ ||+.++..+.++|.++++.. .+|+.+.+..++ .+|++|+++..|+++++.
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999 99999999999999987521 269998876543 368899999999887764
No 236
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.6e-45 Score=317.66 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=181.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
|++++|.|++..++++|||+|++||++||+|+||||||||+++|.|+++| ++|+|+++|+++.-. ..+.-||+|+
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-~~GeI~v~G~~v~~~sP~dA~~~GIGMVh 85 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-DSGEIRVDGKEVRIKSPRDAIRLGIGMVH 85 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-CcceEEECCEEeccCCHHHHHHcCCcEEe
Confidence 57899999999999999999999999999999999999999999999999 699999999998432 3455699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+||.||+.++...............+++.++.+++|+.-..++++.+||-||||||.|-+||.++|++||||
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD 165 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD 165 (501)
T ss_pred eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999998765322223456778889999999999998899999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH---HHHHhcCeeecCC
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD---ALLKELGLLKCRP 205 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~---~~l~~g~~~~~~~ 205 (212)
|||+ |-|....++++.++++++++. ||-++++..++ .+|++|+++...+
T Consensus 166 EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999 999999999999999998863 79999998753 3899999765554
No 237
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.8e-45 Score=327.67 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=171.7
Q ss_pred Cccccccc---CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEE
Q psy8250 1 METFHPLF---GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~---~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~ 73 (212)
++++++.| +++.+++++||+|.+|++++|+||||||||||+|+|+|+++|+++|+|+++|+++... ..++.++
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA 339 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE
Confidence 36888888 3467999999999999999999999999999999999999852599999999987431 2356799
Q ss_pred EEcCCC---CCCCCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 74 FVPQHD---LTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 74 ~v~Q~~---~~~~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
|++|++ .+++.+|+.+|+.+... ...............+.++++.+++.. ..++++.+||||||||++|||||+
T Consensus 340 ~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~ 419 (500)
T TIGR02633 340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL 419 (500)
T ss_pred EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence 999996 57889999999987532 110001122334567889999999964 679999999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADEL 209 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~ 209 (212)
.+|++|||||||+ ||+.++..++++|++++.+. .+||++++...+ .+|++|++++.++.+++
T Consensus 420 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999 99999999999999997654 379999887643 36789999887765543
No 238
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.5e-45 Score=361.26 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=182.8
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~ 76 (212)
+++++|.|++ +.+++||||+|++||++||+||||||||||+|+|+|++.| ++|+|+++|+++.. ...++.+||+|
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-tsG~I~i~G~~i~~~~~~~r~~IGy~p 2018 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECcchHHHHhhhEEEEe
Confidence 4689999985 5799999999999999999999999999999999999999 69999999999853 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+|++|++.+.+.++. .+.++.++.++++++.+++.+..++++++||||||||++||+||+.+|+++|||
T Consensus 2019 Q~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2019 QFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred ccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998776542 334445567889999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|||+ ||+.+++.++++|+++++++ +||+++++...+ .+|++|++++.|++++++.
T Consensus 2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999 99999999999999987653 379999987643 4788999999999998853
No 239
>KOG0058|consensus
Probab=100.00 E-value=1.4e-45 Score=332.86 Aligned_cols=208 Identities=19% Similarity=0.313 Sum_probs=172.4
Q ss_pred cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+|+++.|.. .++|+|+||+|+|||++|||||||+||||+.++|..++.| ++|+|.+||.|+.. ..++++||+|
T Consensus 469 ~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 469 EDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred EEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeee
Confidence 688999964 4599999999999999999999999999999999999999 69999999999854 3578899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
.|+|.+|.. |+.|||.++........+........+.+++..+ |.+.....+..+||||||||++|||||+++|.+|
T Consensus 548 ~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VL 626 (716)
T KOG0058|consen 548 GQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVL 626 (716)
T ss_pred eccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEE
Confidence 999999877 9999999976521101111122233455566655 4455556667789999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||.|| ||..+...+.+.|.++.++++ .|.++.++..+ .++++|+++..|+.+|+-.
T Consensus 627 ILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999 999999999999998876654 49999988765 5899999999999888754
No 240
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.3e-44 Score=298.73 Aligned_cols=190 Identities=24% Similarity=0.296 Sum_probs=160.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|. ..++|+||++.
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~~~--------~~i~~v~q~~~ 77 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-DEGVIKRNGK--------LRIGYVPQKLY 77 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCc--------cCEEEeccccc
Confidence 46899999888899999999999999999999999999999999999998 6999999872 35899999987
Q ss_pred CCCCC--CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 81 TVDTL--TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 81 ~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+++.+ |+.+++.+. ... ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 78 ~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 78 LDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred cccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 76653 677665431 111 124567899999999889999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|++++.+ . .+|+.+.+... + .+| +++++..|+++++.
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l-~~~i~~~g~~~~~~ 208 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVVS 208 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-CCceEeeCCHHHHh
Confidence 99 9999999999999998764 2 37999988664 3 356 45788999888764
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.7e-45 Score=305.82 Aligned_cols=198 Identities=17% Similarity=0.273 Sum_probs=168.5
Q ss_pred Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.| ++..+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|.++.. ..+++.++|+
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 47899999 45679999999999999999999999999999999999985 48999999998853 2356789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC-----------CChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgGqrqRv~lA~ 144 (212)
||++.+|+. |+++|+..... .. .+.+.++++.+|+.+..++++.. ||+|||||++|||
T Consensus 83 ~q~~~lf~~-tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaR 151 (275)
T cd03289 83 PQKVFIFSG-TFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLAR 151 (275)
T ss_pred CCCcccchh-hHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 999999875 99999963211 11 23567888999998888887776 9999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|+++||||||+ ||+.+...+.+.|+++.... .+|+++.+..++ .+|++|+++..|+++++.+
T Consensus 152 all~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 152 SVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999 99999999999999875432 279998876644 4789999999999998764
No 242
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.6e-45 Score=328.24 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=167.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
++++++.|++..+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ...++.++|++|
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 84 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQ 84 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceecc
Confidence 46899999888899999999999999999999999999999999999998 69999999977632 123456899999
Q ss_pred CCCC--C------CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 78 HDLT--V------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 78 ~~~~--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
++.. + ..+|+.+++.+. .....++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 85 RNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred CcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 8643 1 145777766431 12345678999999999889999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
|++|||||||+ ||+.+++.++++|+++++++ .+|+++.+...+ .+|++|+++..|+++++.
T Consensus 154 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999 99999999999999997653 379999887643 478899999999988764
No 243
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=326.75 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=167.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+ .+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|+++|+++... ..++.++|+|
T Consensus 268 ~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~i~~v~ 344 (510)
T PRK09700 268 VRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGKDISPRSPLDAVKKGMAYIT 344 (510)
T ss_pred EeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCEECCCCCHHHHHHCCcEEcc
Confidence 357887764 489999999999999999999999999999999999998 699999999987431 2345699999
Q ss_pred CC---CCCCCCCCHHHHHHHHHhhhc--cc---C-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHH
Q psy8250 77 QH---DLTVDTLTVHEHMTLMARLKM--DR---N-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 77 Q~---~~~~~~ltv~e~l~~~~~~~~--~~---~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
|+ +.+++.+|++||+.+....+. .. . .........+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral 424 (510)
T PRK09700 345 ESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWL 424 (510)
T ss_pred CccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHH
Confidence 98 468889999999987532110 00 0 11223345678999999997 778999999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCc
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPA 206 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~ 206 (212)
+.+|++|||||||+ ||+.++..++++|++++.++ .+||++.+... + .+|++|+++..++.
T Consensus 425 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 425 CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999 99999999999999987653 27999988764 3 46889999887755
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3e-44 Score=296.97 Aligned_cols=209 Identities=17% Similarity=0.180 Sum_probs=167.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~ 74 (212)
++++++.|+++.+++|+||+|++|++++|+||||||||||+++|+|+. +| ++|+|.++|.++... . .++.++|
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPEDRAGEGIFM 82 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-CceEEEECCCccccCCHHHHhhcceEE
Confidence 478999998888999999999999999999999999999999999995 57 699999999877432 1 2346899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHh-hhcccC---CCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMAR-LKMDRN---LHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII 148 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~-~~~~~~---~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~ 148 (212)
++|++.+++.++..+++.+... ...... .........+.++++.+++. ...++.+. +||||||||++|||||+.
T Consensus 83 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (248)
T PRK09580 83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 162 (248)
T ss_pred EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999988887777666543221 110000 11122345677899999995 45667775 799999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|++|||||||+ ||+.++..+.++|+++++.. .+|+.+.+... + .+|++|+++..|+++.++
T Consensus 163 ~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 163 EPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999 99999999999999987643 27999887653 3 367899999999887553
No 245
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2e-45 Score=342.89 Aligned_cols=199 Identities=22% Similarity=0.256 Sum_probs=166.1
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|+ ++.+|+|+||+|++||.+||+||||||||||+|+|+|+++| ++|+|.+||.++.. ..+++.+|||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v 532 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDVQAVRRQLGVV 532 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCHHHHHhccEEE
Confidence 368899995 35799999999999999999999999999999999999999 69999999999854 3567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~ 144 (212)
+|++.+|+. |++||+.++.. . ..+.+.++++..++.+. .......||||||||++|||
T Consensus 533 ~Q~~~lf~g-TI~eNi~~~~~------~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 533 LQNGRLMSG-SIFENIAGGAP------L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred ccCCccCcc-cHHHHHhcCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999876 99999987522 1 12345566666665432 33344679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+++||||||+ ||+.+.+++.+.|+++.... .+|+++.+..++ .+|++|+++++|+.+++.+
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999998873221 379998887665 4788999999999998753
No 246
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=299.66 Aligned_cols=206 Identities=19% Similarity=0.263 Sum_probs=171.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc-------cccc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK-------NLMV 69 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~-------~~~~ 69 (212)
++++++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+..|. ++|+|.++|.++.. ..++
T Consensus 19 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~ 98 (265)
T PRK14252 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVR 98 (265)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHh
Confidence 368999998888999999999999999999999999999999999998741 48999999977631 1245
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCC-HHHHHHHHHHHHHHcCCc----cccCCCCCCCChHHHHHHHHHH
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~----~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
+.++|++|++.+++. |++||+.+...... .. .....+.+.++++.+++. +..++.+.+||+||+||++|||
T Consensus 99 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 99 MRISMVFQKPNPFPK-SIFENVAYGLRIRG---VKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred ccEEEEccCCcCCcc-hHHHHHHhHHHHcC---CChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 679999999988886 99999987643221 11 122345677888888773 4567889999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+|+++||||||+ ||+.++..+.++|++++... .+|+.+.+... + .+|++|+++..|+++++.
T Consensus 175 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 175 ALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999 99999999999999987542 37999988654 3 478899999999988874
No 247
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.6e-45 Score=299.60 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=157.3
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
++++++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~ 92 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYEHKYLHSKVSL 92 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcCHHHHHhhEEE
Confidence 3688999964 3699999999999999999999999999999999999988 69999999987743 224567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
++|++.+++ .|++||+.+..................+.++++.+ |+.+..++++.+||||||||++|||||+.+|++
T Consensus 93 ~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (226)
T cd03248 93 VGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV 171 (226)
T ss_pred EecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999998776 59999998643211000000111122356788888 888888999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcC
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELG 199 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~ 199 (212)
+||||||+ ||+.++..+.++|++++... .+|+.+.+..++ .+|++|+
T Consensus 172 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 172 LILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 99999999 99999999999999987532 279998875433 2455554
No 248
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-44 Score=288.10 Aligned_cols=177 Identities=24% Similarity=0.347 Sum_probs=148.9
Q ss_pred CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcc--cccce
Q psy8250 1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKN--LMVKV 71 (212)
Q Consensus 1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~--~~~~~ 71 (212)
++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++ | ++|+|.++|.++... ..++.
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~-~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS-VEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCC-cceEEEECCEECccchhhhcce
Confidence 368899995 4579999999999999999999999999999999999998 6 699999999987542 34567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 72 i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
++|++|++.+++.+|++||+.+..... .++++..||+||+||++|||||+.+|+
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~p~ 138 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSRAS 138 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999998643210 567788999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhh-cC-----c-chHHHHHHH-H--HHHHhcCeeecC
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-RN-----L-HHVERARTV-D--ALLKELGLLKCR 204 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~-----~-h~~~~~~~~-~--~~l~~g~~~~~~ 204 (212)
++||||||+ ||+.+++.++++|++++++ .. + |+.+.+... + .+|++|+++..|
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999 9999999999999999764 21 3 445666543 2 467888876543
No 249
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-44 Score=358.25 Aligned_cols=207 Identities=25% Similarity=0.368 Sum_probs=182.1
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEc
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~ 76 (212)
+++++|.|+ ++.+++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.+||+|
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchHHHHhhcEEEEe
Confidence 468899995 57799999999999999999999999999999999999999 699999999998532 3456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++.+||+||+.++.+.+. .+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999776542 233445667899999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||+ ||+.+++.++++|+++++.. .||+++++... + .+|++|+++..|+++++.+
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999 99999999999999996432 37999998764 3 4788999999999988764
No 250
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.5e-45 Score=334.79 Aligned_cols=208 Identities=23% Similarity=0.306 Sum_probs=172.2
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++.|+ ++.+|+|+||++++||.+||+||||||||||+++|++++.| ++|+|.+||.++.. ..+++.++||||
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 68899998 67899999999999999999999999999999999999999 69999999999864 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
++.+|. -|++||+.++..........+......+.++++.+ |++.........||||||||++||||++.+|+++||
T Consensus 411 d~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 411 DPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred cceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998 59999999864321100111112222345555665 566666666778999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||| +|+.+...+.+.+.++.+.. .+|.+..++.++ .++++|++++.|+++|+..
T Consensus 490 DEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred eccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999 99999999999999877543 369998888765 4899999999999999854
No 251
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.4e-45 Score=295.22 Aligned_cols=193 Identities=18% Similarity=0.222 Sum_probs=157.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+++.++|+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence 4688999964 4799999999999999999999999999999999999988 69999999998743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+++ .|++||+.+... .. ...+.++++.+++.+. .++++.+||+||+||++|||
T Consensus 84 ~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 84 PQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred CCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 99998776 599999864311 11 1234455555555443 35688999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRP 205 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~ 205 (212)
||+.+|+++||||||+ ||+.++..++++|++++... .+|+.+.+..++ .+|++|++++.|+
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999 99999999999999986532 279998876543 3678999888775
No 252
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=286.19 Aligned_cols=210 Identities=22% Similarity=0.324 Sum_probs=183.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC-EeCCcc----cccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVEKN----LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g-~~~~~~----~~~~~i~~v 75 (212)
+++++++|++..+++++||++.+||.-+|||||||||||+|.+|+|..+| +.|+++++| .+++.. ..+.-||.-
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~e~~IAr~GIGRK 86 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIARAGIGRK 86 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcCchhhccCCHHHHHHhccCcc
Confidence 47899999999999999999999999999999999999999999999998 699999999 777542 234568999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMD-----RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
||.|..|.++||+||+.+....... ......+.+.+++++|...||.+..++....||.|||||+.|++-++++|
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 9999999999999999886542111 00123455678999999999999999999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
++|++|||++ +-.....+.-++|+.++..+. .||+++++... .+|++|.++++|+.|+++.
T Consensus 167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 167 KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence 9999999999 988889999999999998764 59999998754 3899999999999999864
No 253
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.7e-45 Score=334.37 Aligned_cols=198 Identities=18% Similarity=0.197 Sum_probs=166.5
Q ss_pred cccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++.|++ ..+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++.. ..++++++|+||
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 678888864 5699999999999999999999999999999999999999 69999999998854 356788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al 146 (212)
++.+|+. |+++|+.++.. . .++++.++++.+|+.+ ........||||||||++|||||
T Consensus 423 ~~~lF~~-Ti~~NI~~~~~------~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL 491 (592)
T PRK10790 423 DPVVLAD-TFLANVTLGRD------I----SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL 491 (592)
T ss_pred CCccccc-hHHHHHHhCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999987 99999998531 1 1234555666666543 33344567999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+.+|+++||||||+ ||+.+.+.+.+.|.++.... .+|+++....++ .+|++|++++.|+++++.+
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999 99999999999999986543 379998877665 3688999999999998753
No 254
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.8e-44 Score=285.37 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=153.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+++ +||++++|++++|+||||||||||+++|+|+.+| ++|+|+++|.++.... .+.++|++|++.
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~-~~~~~~~~~~~~ 80 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIA-KPYCTYIGHNLG 80 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhh-hhhEEeccCCcC
Confidence 478999998766665 9999999999999999999999999999999998 6999999999875422 345899999988
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+|+.||+.+....+. ..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+
T Consensus 81 ~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred CCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8888999999987543221 13456788999999888899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
+|+.++..+.++|++..+.. .+|+.+.+...
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence 99999999999998765443 26998776553
No 255
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-45 Score=322.72 Aligned_cols=199 Identities=25% Similarity=0.313 Sum_probs=171.8
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.+..+ ..++++++||+|
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccCHHHHHhHeeeeCC
Confidence 5899999654 899999999999999999999999999999999999999 79999999988754 458899999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC----------CCCCCChHHHHHHHHHHHHh
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LSgGqrqRv~lA~al~ 147 (212)
+|.+|+. |++||+.++..- ..++.+.+++++.|+.+..++ ....|||||+|||++||||+
T Consensus 403 ~p~lf~g-TireNi~l~~~~---------~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 403 NPYLFAG-TIRENILLARPD---------ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred CCccccc-cHHHHhhccCCc---------CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 9999887 999999985321 123456667777766554333 33459999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+++++|+||||+ ||.++.+.+.+.|.++.++.. ||+++.++..+ .+|++|++++.|.++++.+
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 9999999999999 999999999999999988753 79999988765 5799999999999999864
No 256
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.8e-45 Score=342.16 Aligned_cols=200 Identities=20% Similarity=0.237 Sum_probs=163.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ +.+|+|+||+|++|+.+||+||||||||||+++|+|+++| ++|+|.+||.++.. ..+++.++||
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v 558 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-WSGEILFDGIPREEIPREVLANSVAMV 558 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEeHHHCCHHHHHhheeEE
Confidence 3688999964 5799999999999999999999999999999999999999 69999999999853 3568899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+. |++||+.++.. ..+ .+.+.++++..++ +.........||||||||++|||
T Consensus 559 ~Q~~~lf~g-Ti~eNi~l~~~-----~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 559 DQDIFLFEG-TVRDNLTLWDP-----TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred ecCChhhhc-cHHHHhhCCCC-----CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence 999998876 99999987421 111 2233444444443 44444556789999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+++||||||| ||+.+.+++++.|++.... -.+|+++.+..++ .+|++|+++++|+.+++.+
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999 9999999999999873111 1379998887765 4788999999999998853
No 257
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-44 Score=303.82 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=177.9
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccceEEEEcCCC--CCC
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTV 82 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~~i~~v~Q~~--~~~ 82 (212)
..++++|||++.+|+.+||+|+||||||||-.+|.+++.+ +|+|.|+|++++.. ..++.+-.|||+| .+.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s--~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc--CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 4689999999999999999999999999999999998875 69999999999642 3567789999998 478
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
|.+||.+-+..+...+. ...+.++..+++.++|+.+||++ ..+++|+++|||||||++||||++.+|++++||||||
T Consensus 378 PRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSA 456 (534)
T COG4172 378 PRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSA 456 (534)
T ss_pred cccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchH
Confidence 99999999999888764 34678899999999999999975 6899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 161 VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
||...+.++.++|+.++++++ +||+..++..+ .+|++|++++.|+.+++-+
T Consensus 457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 999999999999999998864 79999987753 4899999999999988743
No 258
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=333.74 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=165.1
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+|+|+||+|++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEE
Confidence 3688999964 5699999999999999999999999999999999999999 69999999999854 3467889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+. |++||+.++.. .... ++++.++++.+++ +........+||||||||++|||
T Consensus 423 ~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 423 SQNVHLFND-TIANNIAYART----EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred ccCceeecc-hHHHHHhcCCC----CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 999998875 99999987421 0111 2334445555543 33333445679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+++||||||+ ||+.+...+++.|.++.+.. ++|+++.++.++. +|++|++++.|+.+++.+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999 99999999999999986543 3799988776654 688999999999988753
No 259
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=295.02 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=169.3
Q ss_pred cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-------ccccceEEEEc
Q psy8250 4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGFVP 76 (212)
Q Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-------~~~~~~i~~v~ 76 (212)
+.+.+|+.. + +++|+.+...++||-|+||||||||+|+|+|+..| +.|.|.+||..+.. ...++++||||
T Consensus 6 ~~~~lG~~~-l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 6 FRQRLGNFA-L-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred hhhhcCceE-E-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 444555543 2 78899888789999999999999999999999999 69999999987632 23467899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|+..+||++||+.|+.|+.... .....+++...+|+.++++++|..|||||||||+|+|||+..|++|+||
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred eccccccceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 9999999999999999976432 3446788899999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||.+ ||..-+.+++-.|.+++++. ++|.++++... + .+|.+|++.+.|+.+++-
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 9999 99999999999999999874 37999888764 3 489999999999998873
No 260
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-44 Score=279.56 Aligned_cols=159 Identities=27% Similarity=0.442 Sum_probs=139.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|++..+|+++||++.+|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+||+
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecC
Confidence 46889999887899999999999999999999999999999999999988 69999999998753 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|+.||+. |||||+||++|||||+.+|+++|||||
T Consensus 82 ~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~~p~illlDEP 122 (173)
T cd03230 82 PSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLHDPELLILDEP 122 (173)
T ss_pred CccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99998899998863 999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG 199 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~ 199 (212)
|+ ||+.++..+.++|++++++. .+|+.+.+... + .+|++|+
T Consensus 123 t~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 99 99999999999999997653 27998887653 2 2455554
No 261
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.6e-44 Score=284.45 Aligned_cols=170 Identities=35% Similarity=0.529 Sum_probs=146.3
Q ss_pred CcccccccCC------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcccccceE
Q psy8250 1 METFHPLFGD------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKNLMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~~~~~~i 72 (212)
++++++.|++ +.+++++||++++|++++|+||||||||||+++|+|++ +| .+|+|.++|+++.....++.+
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchHhhhheE
Confidence 4688999975 67999999999999999999999999999999999999 88 699999999988654456679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
+|++|++.+++.+|+.||+.+.... . +||+||+||++|||||+.+|++
T Consensus 85 ~~~~q~~~~~~~~t~~~~i~~~~~~---------------~-----------------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 85 GYVPQDDILHPTLTVRETLMFAAKL---------------R-----------------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred EEccCcccCCCCCcHHHHHHHHHHh---------------c-----------------cCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999764210 0 8999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHHH-H--HHHHhcCeeec
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE-RARTV-D--ALLKELGLLKC 203 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~~-~--~~l~~g~~~~~ 203 (212)
+||||||+ ||+.+++.+.++|++++.+. .+|+.+ .+... + .+|++|+++..
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999 99999999999999987643 269985 55443 2 46778887654
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.4e-44 Score=337.63 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=165.9
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ ..+|+|+||+|++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++.. ..+++.++||
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~l~~~~~~~lr~~i~~v 544 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDPADLRRNIGYV 544 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhccEEE
Confidence 3688999963 4699999999999999999999999999999999999999 69999999999854 3567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
+|++.+|+. |++||+.++.. ..+ .+++.++++..++ +.........||||||||++|||
T Consensus 545 ~Q~~~lf~~-TI~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 545 PQDPRLFYG-TLRDNIALGAP-----YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred CCChhhhhh-hHHHHHhCCCC-----CCC----HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 999998876 99999987522 111 2233444444443 34444556789999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|+++||||||+ ||+.+.+.+.+.|.++.+.. .+|+++.+..++ .+|++|++++.|+.+++-+
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999 99999999999999986543 379998887665 4788999999999998753
No 263
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.2e-44 Score=328.83 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=169.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++||
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhheeEE
Confidence 3688999964 4699999999999999999999999999999999999999 69999999998854 3467889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC----------CCCCCChHHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LSgGqrqRv~lA~a 145 (212)
+|++.+|+. |++||+.++.. . ...+.+.++++.+++.+..++ ....||||||||++||||
T Consensus 420 ~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa 489 (574)
T PRK11160 420 SQRVHLFSA-TLRDNLLLAAP-----N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489 (574)
T ss_pred cccchhhcc-cHHHHhhcCCC-----c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence 999998876 99999987531 1 123456778888888765443 456799999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++|+++||||||+ +|+.+.+.+.+.|.++.+.. .+|+++.+..++ .+|++|++++.|+.+++-+
T Consensus 490 ll~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 490 LLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999 99999999999999986543 279998887655 3688999999999988753
No 264
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.5e-44 Score=338.02 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=164.3
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
+++++++|+ ++.+|+|+||+|++|+.+||+||||||||||+++|+|++.| ++|+|.+||.++.. ..+++.++||+
T Consensus 476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 368899996 46799999999999999999999999999999999999999 69999999998743 45678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|++.+|+. |++||+.++... ..+ .+.+.++++..+ ++.........||||||||++||||
T Consensus 555 Q~~~lf~g-TI~eNi~l~~~~----~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 555 QEPYIFSG-SILENLLLGAKE----NVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred cCceehhH-HHHHHHhccCCC----CCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 99999876 999999985211 111 122334444443 3344445567899999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc---CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR---NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~---~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++|++|||||||+ ||+.+.+.+.+.|.+++... .+|+++.+..++ .+|++|+++..|+.+++-+
T Consensus 626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999 99999999999998863211 379998876655 4788999999999998743
No 265
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=318.68 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=164.9
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCC
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDT 84 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~ 84 (212)
.+++++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 369999999999999999999999999999999999998 699999999987532 1345699999996 57888
Q ss_pred CCHHHHHHHHHhhhccc---CCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 85 LTVHEHMTLMARLKMDR---NLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 85 ltv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+|+.||+.+........ .....+..+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 99999998743211000 012233455688999999995 67899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADEL 209 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~ 209 (212)
||+.+++.++++|++++.++ .+||++.+...+ .+|++|+++..++++++
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999997653 379999887653 47889999998887766
No 266
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.6e-44 Score=299.27 Aligned_cols=208 Identities=17% Similarity=0.251 Sum_probs=164.0
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ ..+++++||+|++|++++|+||||||||||+++|+|+++| .+|+|+++|.++.. ...++.++|+
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v 100 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSII 100 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence 4688899976 5799999999999999999999999999999999999988 69999999998753 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+|++.+++. |+++|+....... ............+.++++.+ +++...+..+.+||+||+||++|||||+.+|+++
T Consensus 101 ~q~~~l~~~-tv~~nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 101 LQDPILFSG-SIRFNLDPECKCT-DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred CCCCccccc-HHHHhcCcCCCCC-HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999988764 9999875321100 00000000111234455555 6666677788999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||+ ||+.++..+++++.+++... .+|+++.+..++ .+|++|+++..|+++++.+
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999 99999999999999875432 279999886543 3688999999999887753
No 267
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.5e-44 Score=324.99 Aligned_cols=204 Identities=24% Similarity=0.258 Sum_probs=167.9
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEe
Confidence 3688999953 5799999999999999999999999999999999999998 69999999998754 2457789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHH-----HHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE-----RARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
||++.+|+. |++||+.++.. ..+.++ ....+.++++.+ |++.........||||||||++|||||++
T Consensus 398 ~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 398 PQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred cCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999876 99999985321 111111 112345566666 66666777788999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|+++||||||+ ||+.+..++.+.|.+++.+. .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999 99999999999999986322 379998765554 4688999999999988754
No 268
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=319.95 Aligned_cols=198 Identities=15% Similarity=0.234 Sum_probs=165.3
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCC
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDT 84 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~ 84 (212)
.+++|+||+|++|+++||+||||||||||+|+|+|+++| ++|+|+++|+++... ..++.++|+||++ .+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 489999999999999999999999999999999999988 699999999987421 2345789999986 48888
Q ss_pred CCHHHHHHHHHhhhcc-cC--CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 85 LTVHEHMTLMARLKMD-RN--LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 85 ltv~e~l~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+|+.||+.+....... .. .......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 9999999874321100 00 11223345678999999994 67899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+++.++++|.++++++ .+||++++..++ .+|++|++++.|+++++.
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999998754 379999987653 478899999999887753
No 269
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=279.02 Aligned_cols=152 Identities=29% Similarity=0.435 Sum_probs=136.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~v 75 (212)
++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ...++.++|+
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEE
Confidence 36889999888899999999999999999999999999999999999988 69999999998743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+|++.+++.+|+.||+.+. ||+|||||++|||||+.+|+++||
T Consensus 82 ~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~llil 124 (178)
T cd03229 82 FQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVLLL 124 (178)
T ss_pred ecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999988889999987642 999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHH
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERART 190 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~ 190 (212)
||||+ ||+.++..++++|++++++ . .+|+.+.+..
T Consensus 125 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999 9999999999999999875 2 2699988764
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-43 Score=286.39 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=153.0
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ ..+++++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++|.++.. ...++.++|+
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v 87 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLTII 87 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence 3678999975 4799999999999999999999999999999999999998 69999999998743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+++ .|+++|+.+.. .... ..+.++++ .++++.+|||||+||++|||||+.+|+++||
T Consensus 88 ~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llll 149 (207)
T cd03369 88 PQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVL 149 (207)
T ss_pred ecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99998876 49999996521 1111 12333333 3577899999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPA 206 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~ 206 (212)
||||+ ||+.++..++++|+++.... .+|+.+.+...+ .+|++|+++..|++
T Consensus 150 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 150 DEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999 99999999999999985422 279998875543 46789998887764
No 271
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.6e-44 Score=328.07 Aligned_cols=199 Identities=20% Similarity=0.276 Sum_probs=163.3
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++.. ..+++.++|+|
T Consensus 337 ~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 3678899964 5699999999999999999999999999999999999999 69999999998854 34678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|++.+|+. |++||+.++.. ..+ ++.+.++++.++ ++.........||||||||++||||
T Consensus 416 Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 416 QDAGLFNR-SIEDNIRVGRP-----DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred cCcccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 99998876 99999987521 111 122333444443 3434444556799999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|+++||||||+ ||+.+.+.+++.|.++.... .||+.+.++.++. .|++|+++..|+.+++.
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999 99999999999998885433 3799988776654 67899999999988874
No 272
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-44 Score=274.42 Aligned_cols=182 Identities=22% Similarity=0.310 Sum_probs=159.7
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCC
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHD 79 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~ 79 (212)
++.+.-++..+|+++||.+.+||+++|.||||||||||+|+++.+.+| ++|.++|.|++++. ..++..++|+.|.|
T Consensus 8 q~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred HHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-CCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 444455778899999999999999999999999999999999999999 69999999999964 35678899999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+|++ ||++|+.|+...+..+ ...+.+..+++.+++.+ .+++++.+||||||||++|+|.|..-|+||+||||
T Consensus 87 aLfg~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 87 ALFGD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred ccccc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 99987 9999999988776422 24566788999999965 68999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh------cCcchHHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD------RNLHHVERARTV 191 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~------~~~h~~~~~~~~ 191 (212)
|| ||+.+++.+.++|.++..+ +.|||-..+..+
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh 200 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH 200 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence 99 9999999999999998643 258998876543
No 273
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.1e-44 Score=335.91 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=160.6
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
+++++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. ..+++.++|
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceE
Confidence 3688999964 4699999999999999999999999999999999999999 69999999999854 346788999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHH
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA 143 (212)
|+|+|.+|+. |++||+.++.. ..+ ++.+.++++..++. ........+||||||||++||
T Consensus 560 v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 560 VGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred EecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 9999998875 99999987532 111 23344555555543 333444568999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||+++|+++||||||+ ||+.+.+.+.+ .... ... .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~-~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE-SRSR-ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH-hhcc-CCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999 99999999888 3222 222 379998877665 4688999999999998854
No 274
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.4e-43 Score=322.36 Aligned_cols=202 Identities=33% Similarity=0.502 Sum_probs=175.3
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLT 86 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~lt 86 (212)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+|. .+|+|.++|.+++...+++.+||++|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999988762 37999999999865556778999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC------CCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN------VLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
|+||+.|.+.++.......++...+++++++.+|+.+..++.++ .||||||||++|||||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999998876544444556667789999999999988888876 499999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHH-HHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVE-RART-VD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~-~~~~-~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+.++..+++.|++++.++ .+|+.. ++.. .+ .+|++|++++.|+++++.
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999998653 268874 4433 33 478899999999998864
No 275
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-43 Score=317.16 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=163.2
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcCCC---CCCCCC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTL 85 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q~~---~~~~~l 85 (212)
+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|+++|.++.... .++.++|+||++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 69999999999999999999999999999999999988 6999999999875321 235689999985 478889
Q ss_pred CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT 163 (212)
Q Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~ 163 (212)
|+.+|+..................+.+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+ ||+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 9999986431110000011222345688999999997 68899999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 164 LTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 164 ~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
.+++.++++|+++++++ .+||++++...+ .+|++|+++..++++++.
T Consensus 437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 437 SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999997653 379999987643 478899999999887764
No 276
>KOG0055|consensus
Probab=100.00 E-value=3.8e-44 Score=338.91 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=168.6
Q ss_pred cccccccCCc---ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 2 ETFHPLFGDT---NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 2 ~~l~~~~~~~---~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+|++++|..+ .+|+++||+|++|+.++|+|||||||||++++|.+++.| ++|+|++||.++.. ..++.+||.|
T Consensus 354 ~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV 432 (1228)
T KOG0055|consen 354 RNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLV 432 (1228)
T ss_pred EEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCee
Confidence 5788999654 599999999999999999999999999999999999999 69999999999864 3567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+|+|.+|. .|++||+.++..-..............+.+++..+ |++.....+..+||||||||++|||||+++|+||
T Consensus 433 ~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 433 SQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred eechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 99997665 59999999864321101111111122234444444 4444445555679999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||| ||+.+.+.+.+.|.+....++ +|.+..++..+ .++++|+++..|+++|+-.
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 9999999 999999999999999887654 59999998866 4799999999999999753
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=279.72 Aligned_cols=170 Identities=27% Similarity=0.379 Sum_probs=143.7
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEECCEeCCcccccceEEE
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVEKNLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~~g~~~~~~~~~~~i~~ 74 (212)
++++++.|++ +.+++++||++++|++++|+||||||||||+++|+|+.. | ++|+|.++|+++. ...++.++|
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-~~G~i~~~g~~~~-~~~~~~i~~ 83 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLD-KNFQRSTGY 83 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-cceEEEECCEehH-HHhhhceEE
Confidence 4688999964 679999999999999999999999999999999999863 6 6999999999875 334567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
++|++.+++.+|++||+.+.... + +|||||+||++|||||+.+|+++|
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~la~al~~~p~vll 131 (192)
T cd03232 84 VEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTIGVELAAKPSILF 131 (192)
T ss_pred ecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence 99999999999999999864210 0 899999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHH-HHH-HH--HHHHh-cCeeecC
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVER-ART-VD--ALLKE-LGLLKCR 204 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~-~~~-~~--~~l~~-g~~~~~~ 204 (212)
+||||+ ||+.++..++++|+++++.. .+|+.+. +.. ++ .+|++ |++++.|
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999 99999999999999987543 2799873 433 23 46777 8877654
No 278
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.5e-43 Score=279.55 Aligned_cols=165 Identities=22% Similarity=0.347 Sum_probs=140.9
Q ss_pred CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc
Q psy8250 1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~ 76 (212)
++++++.|++. .+++++||++++|++++|+||||||||||+++|+|+.+| .+|+|.++|.++.. ..+++.++|++
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 36789999765 699999999999999999999999999999999999988 69999999997743 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|++.+++ .|++||+ +.+||+||+||++|||||+.+|+++|||
T Consensus 82 q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 82 QRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred cCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9988775 6888876 6789999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCR 204 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~ 204 (212)
|||+ ||+.+++.++++|+++++.. .+|+.+.+...+ .+|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999 99999999999999986432 269998875433 357788876543
No 279
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.4e-44 Score=332.05 Aligned_cols=204 Identities=20% Similarity=0.284 Sum_probs=166.2
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++.. ..+++.++||
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-QHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEehhhCCHHHHHHhCeEE
Confidence 3688999953 4699999999999999999999999999999999999999 69999999998854 3467889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHH-----HHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-----ARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+|++.+|+. |++||+.++.. ..+.++. ...+.++++.+ |++........+||||||||++|||||++
T Consensus 537 ~q~~~lf~~-ti~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 537 LQENVLFSR-SIRDNIALCNP-----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred ccCCeehhh-hHHHHHhcCCC-----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999998875 99999987421 1111111 11233444444 45555556677899999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|+++||||||+ ||+.+.+.+++.|+++.... .+|+++.+..++ .+|++|+++++|+.+++.+
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999 99999999999999986433 379998887655 4788999999999998754
No 280
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-42 Score=283.89 Aligned_cols=189 Identities=26% Similarity=0.289 Sum_probs=154.9
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC--CCCCHHHHHHHHHh
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMAR 96 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~--~~ltv~e~l~~~~~ 96 (212)
|+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++.. .++.++|+||++.++ +.+|+.+|+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 57899999999999999999999999999998 69999999987632 345799999998764 34799999987432
Q ss_pred hh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHH
Q psy8250 97 LK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMA 174 (212)
Q Consensus 97 ~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~ 174 (212)
.. .............+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+ ||+.++..+.++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 00001112334568889999999988899999999999999999999999999999999999 99999999999999
Q ss_pred HHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 175 RLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 175 ~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+++++. .+|+++.+... + .++ +|+++..|+++++.+
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 987643 27999987654 2 356 799999999887743
No 281
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-43 Score=324.59 Aligned_cols=199 Identities=20% Similarity=0.258 Sum_probs=163.8
Q ss_pred cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++|.+ ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++.. ..+++.++|+|
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 678888854 5699999999999999999999999999999999999999 69999999998753 34677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|+|.+|+. |++||+.++.. ...+ ++++.++++.+|+.+ ........||||||||++||||
T Consensus 413 Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 413 QDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred cCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99998876 99999987521 0111 234555566655543 2333345799999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~ 210 (212)
++.+|+++||||||+ ||+.+.+.+++.|.++.+.. .||+.+....++. .+++|+++..|+.+++.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999 99999999999999886543 3899988766654 57799999999988874
No 282
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-42 Score=286.72 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=160.3
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
...+|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|. +++++|++.+++.+|+.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I~~~g~----------~~~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKVDRNGE----------VSVIAISAGLSGQLTGIE 104 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCE----------EeEEecccCCCCCCcHHH
Confidence 34599999999999999999999999999999999999998 6999999985 356778777778899999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE 168 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~ 168 (212)
|+.+..... ..........+..+++.+++.+..++++.+||+||+||++|||||+.+|++|||||||+ ||+.++..
T Consensus 105 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 105 NIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence 998754332 12333444566788899999988999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 169 HMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 169 ~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
++++|.++++.. .+|+.+.+... + .+|++|+++..|+++++.+
T Consensus 182 l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999987543 27999888664 2 4788999999999888754
No 283
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-43 Score=324.49 Aligned_cols=200 Identities=20% Similarity=0.263 Sum_probs=163.5
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
++++++.|++ +.+|+|+||++++||.++|+||||||||||+++|+|+++| .+|+|.++|.+++. ..+++.++|
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~ 418 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDGVDLRQLDPAELRARMAL 418 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHHhceE
Confidence 3578888863 4699999999999999999999999999999999999999 69999999998854 345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-----------ccccCCCCCCCChHHHHHHHHH
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-----------LKCKNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqrqRv~lA 143 (212)
+||+|.+|+. |++||+.++.. ..+ .+.+.++++.+++ +.........||||||||++||
T Consensus 419 ~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 419 VPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred EccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 9999998876 99999987421 111 2234445555544 3333445567999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
||++.+|+++||||||+ +|+.+.+.+++.|+++.+.. .||+.+....++. .+++|++++.|+++++.+
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999 99999999999999986432 3799988766654 577999999999888753
No 284
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.9e-43 Score=324.28 Aligned_cols=204 Identities=24% Similarity=0.291 Sum_probs=165.3
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|++ +.+++|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|++
T Consensus 337 ~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 3688999975 5699999999999999999999999999999999999999 69999999998753 34677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHH-----HHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
|++.+++ .|++||+.++.. ..+.++.... +.+.+..+ |++.........||||||||++|||||+.+
T Consensus 416 q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 416 QDAGLFN-RSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred cCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9998886 499999987521 1112111111 22333333 455556677789999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++||||||+ ||+.+.+.+.+.|.++.... .+|+.+.+..++ .+|++|++++.|+.+++.+
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999 99999999999999886533 379998886655 3688999999999888753
No 285
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.4e-43 Score=280.22 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=146.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---c-ccceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---L-MVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~-~~~~i~~ 74 (212)
++++++.|+++.+++|+||++.+|++++|+||||||||||+++|+|+. .| ++|+|.++|.++... . .+..++|
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-CccEEEECCEECCcCCHHHHhhCcEEE
Confidence 468999998888999999999999999999999999999999999994 67 699999999988542 1 2345999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+||++.+++..++.+++ +....+|||||+||++|||||+.+|+++|
T Consensus 82 v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~qrv~laral~~~p~ill 127 (200)
T cd03217 82 AFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAI 127 (200)
T ss_pred eecChhhccCccHHHHH----------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999888888877665 11235899999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH-H-H--HHHHhcCeeecCCch
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART-V-D--ALLKELGLLKCRPAD 207 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~-~-~--~~l~~g~~~~~~~~~ 207 (212)
|||||+ ||+.++..++++|++++++. .+|+++.+.. . + .+|++|++++.|+.+
T Consensus 128 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999 99999999999999997543 2699998764 3 3 478899999998544
No 286
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-42 Score=274.23 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=136.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.| +++++||++++|++++|+||||||||||+++|+|+++| ++|+|+++|.++... ..++.++|++
T Consensus 7 ~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (182)
T cd03215 7 VRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVP 81 (182)
T ss_pred EeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEec
Confidence 36788887 89999999999999999999999999999999999998 699999999987532 2356799999
Q ss_pred CCC---CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 77 QHD---LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 77 Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|++ .+++.+|++||+.+... ||+|||||++|||||+.+|+++
T Consensus 82 q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~ll 126 (182)
T cd03215 82 EDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPRVL 126 (182)
T ss_pred CCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCCEE
Confidence 985 57888999999876310 9999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcC
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELG 199 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~ 199 (212)
||||||+ ||+.+++.+.++|++++.+. .+|+.+.+... + .+|++|+
T Consensus 127 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 9999999 99999999999999987543 26999887663 2 3566665
No 287
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.8e-42 Score=297.22 Aligned_cols=179 Identities=24% Similarity=0.316 Sum_probs=155.3
Q ss_pred EECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHH
Q psy8250 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 107 (212)
Q Consensus 29 iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 107 (212)
|+||||||||||+++|+|+++| ++|+|.++|+++... ..++.++|+||++.+|+.+|+.||+.++.... ..+..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 6899999999999999999998 699999999988542 23567999999999999999999999876432 123344
Q ss_pred HHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----
Q psy8250 108 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R----- 180 (212)
Q Consensus 108 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~----- 180 (212)
...++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+ ||+.++..+.++|++++++ .
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 55678899999999999999999999999999999999999999999999999 9999999999999998765 2
Q ss_pred CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 181 NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 181 ~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.|||++++... + .+|++|+++..|+++++.+
T Consensus 157 vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 37999988664 3 4788999999999998764
No 288
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.4e-43 Score=278.09 Aligned_cols=165 Identities=31% Similarity=0.453 Sum_probs=140.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|++..+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++|+||
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 46899999888899999999999999999999999999999999999998 699999999887431 12334566665
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
+++.+|+.+..++.+.+||+||+||++|||||+.+|+++||||
T Consensus 81 -------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 81 -------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred -------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6777888777788899999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeec
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKC 203 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~ 203 (212)
||+ ||+.++..+.++|.+++.+ . .+|+.+.+... + .++++|+++..
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999 9999999999999999765 2 26999887553 2 46778877654
No 289
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=307.43 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=163.4
Q ss_pred cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250 2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~ 78 (212)
+++++.|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.+. ++.+.
T Consensus 25 knL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~----------~i~~~ 93 (549)
T PRK13545 25 KDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAA----------LIAIS 93 (549)
T ss_pred EEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEee----------eEEec
Confidence 567777766 4699999999999999999999999999999999999998 699999999752 12223
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+|++||+.+..... .....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP 170 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170 (549)
T ss_pred cccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 45667789999998754332 123344455678899999999889999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+.++..++++|++++.+. .+|+++.+... + .+|++|+++..|+++++.+
T Consensus 171 TsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 171 LSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99 99999999999999987543 37999988664 3 4688999999999887653
No 290
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.7e-43 Score=319.82 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=140.7
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcC
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q 77 (212)
+++++++|++ +.+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.+||.++.. ..+++.++||||
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i~g~~i~~~~~~lr~~i~~V~Q 415 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-LQGEVTLDGVSVSSLQDELRRRISVFAQ 415 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhHHHHHHhheEEEcc
Confidence 3688999965 5699999999999999999999999999999999999999 69999999998753 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHH
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al 146 (212)
+|.+|+. |++||+.++.. .. .++++.++++..++.+. .......||||||||++|||||
T Consensus 416 ~~~lF~~-TI~eNI~~g~~-----~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 416 DAHLFDT-TVRDNLRLGRP-----DA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred Ccccccc-cHHHHHhccCC-----CC----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 9999877 99999998521 11 13345566666665432 2333457999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~ 179 (212)
+++|+++||||||| ||+.+.+.+.+.+.++...
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~ 519 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSG 519 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999 9999999999999887543
No 291
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-43 Score=285.57 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=152.1
Q ss_pred cccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceE
Q psy8250 2 ETFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS 72 (212)
Q Consensus 2 ~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i 72 (212)
+++++.|.. ..+++||||+|++||++||+|+||||||||-|+|.|++.| ++|+|+|+|+++....
T Consensus 8 ~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-t~G~i~f~g~~i~~~~----- 81 (268)
T COG4608 8 KNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-TSGEILFEGKDITKLS----- 81 (268)
T ss_pred eccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-CCceEEEcCcchhhcc-----
Confidence 567777742 3799999999999999999999999999999999999999 7999999999864322
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
..+..+++.++|+.+|+.+ .+++++++|||||+||++|||||+.+|+
T Consensus 82 --------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~ 129 (268)
T COG4608 82 --------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPK 129 (268)
T ss_pred --------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc
Confidence 1245667899999999964 7999999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
++++|||+| ||...+.+++++|.+++++.+ +||+..++..+ .+|+.|+++..|+.+++..
T Consensus 130 liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 130 LIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred EEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999 999999999999999998753 79999998753 5899999999999988754
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.7e-43 Score=274.39 Aligned_cols=157 Identities=26% Similarity=0.335 Sum_probs=134.8
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++++++.|++ ..+++++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEE
Confidence 3688999975 4699999999999999999999999999999999999998 699999999987532 345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+|++.+++. |++||+ |||||+||++|||||+.+|+++||
T Consensus 82 ~q~~~~~~~-tv~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lll 120 (173)
T cd03246 82 PQDDELFSG-SIAENI----------------------------------------LSGGQRQRLGLARALYGNPRILVL 120 (173)
T ss_pred CCCCccccC-cHHHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987774 998876 999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcC
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELG 199 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~ 199 (212)
||||+ ||+.++..++++|+++++++ .+|+.+.+..++ .+|++|+
T Consensus 121 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 121 DEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred ECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence 99999 99999999999999997643 279988764322 2444554
No 293
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.5e-43 Score=318.01 Aligned_cols=199 Identities=18% Similarity=0.128 Sum_probs=164.2
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..+||++|++
T Consensus 9 i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G~i~~~~~--------~~i~~v~Q~~ 79 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEGEARPAPG--------IKVGYLPQEP 79 (556)
T ss_pred EeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEecCC
Confidence 468999998 78899999999999999999999999999999999999998 6999999742 3589999999
Q ss_pred CCCCCCCHHHHHHHHHh-hhc----------ccCCCH----------------------HHHHHHHHHHHHHcCCccccC
Q psy8250 80 LTVDTLTVHEHMTLMAR-LKM----------DRNLHH----------------------VERARTVDALLKELGLLKCKN 126 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~-~~~----------~~~~~~----------------------~~~~~~~~~~l~~~gl~~~~~ 126 (212)
.+++.+|+.||+.++.. +.. ...... .+...++.++++.+|+.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 99999999999987532 100 000000 012356788999999964 78
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCe
Q psy8250 127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGL 200 (212)
Q Consensus 127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~ 200 (212)
+++.+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++... .++||.+.+...+ .+|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 9999999999999999999999999999999999 9999999999999987521 1379999887643 47889997
Q ss_pred e-ecCCchhh
Q psy8250 201 L-KCRPADEL 209 (212)
Q Consensus 201 ~-~~~~~~~~ 209 (212)
+ +.|+.+++
T Consensus 239 ~~~~g~~~~~ 248 (556)
T PRK11819 239 IPWEGNYSSW 248 (556)
T ss_pred EEecCCHHHH
Confidence 6 77887764
No 294
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=315.95 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=163.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+++++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++| ++|+|.++|. ..++|++|++.
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--------~~i~~~~q~~~ 74 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-SAGNVSLDPN--------ERLGKLRQDQF 74 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEeccCC
Confidence 46899999988899999999999999999999999999999999999998 6999999873 34899999998
Q ss_pred CCCCCCHHHHHHHHHh-hh----------cccC------------------CCHHHHHHHHHHHHHHcCCccc-cCCCCC
Q psy8250 81 TVDTLTVHEHMTLMAR-LK----------MDRN------------------LHHVERARTVDALLKELGLLKC-KNSVLN 130 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~~l~~~gl~~~-~~~~~~ 130 (212)
+++.+|++||+.++.. .+ .... ....+...++.++++.+|+.+. .++++.
T Consensus 75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 154 (530)
T PRK15064 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS 154 (530)
T ss_pred cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh
Confidence 9999999999986421 00 0000 0001223567889999999764 457889
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCe-eec
Q psy8250 131 VLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGL-LKC 203 (212)
Q Consensus 131 ~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~-~~~ 203 (212)
+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|.+.... .++||.+.+... + .+|++|++ ++.
T Consensus 155 ~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999 9999999999998642111 137999988664 3 47889998 478
Q ss_pred CCchhhh
Q psy8250 204 RPADELN 210 (212)
Q Consensus 204 ~~~~~~~ 210 (212)
|+++++.
T Consensus 235 g~~~~~~ 241 (530)
T PRK15064 235 GNYDEYM 241 (530)
T ss_pred CCHHHHH
Confidence 8887664
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-43 Score=322.48 Aligned_cols=199 Identities=18% Similarity=0.268 Sum_probs=162.6
Q ss_pred cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|++
T Consensus 317 ~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 567888854 5699999999999999999999999999999999999999 69999999998753 34567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|++.+|+. |++||+.++.. ..+ .+.+.++++..+ ++...+.....||||||||++||||
T Consensus 396 q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 396 QTPFLFSD-TVANNIALGRP-----DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred cCCeeccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99998876 99999987421 111 122333444443 3444455667899999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++|+++||||||+ ||+.+...+++.|+++.... .+|+++.+..++ .+|++|+++..|+.+++.+
T Consensus 466 ll~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999 99999999999999886432 379998776655 3688999999999888753
No 296
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=285.12 Aligned_cols=204 Identities=22% Similarity=0.221 Sum_probs=171.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~ 76 (212)
|+++++.|+++.+|+|||++|++||.++|+|||||||||||++++|..+| .+|.+.+.|+..-. .+++++||+|.
T Consensus 34 l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-ssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-SSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred ecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-CCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 57899999999999999999999999999999999999999999999988 69999999998732 45788999996
Q ss_pred CC--CCCCCCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 77 QH--DLTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 77 Q~--~~~~~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
-. ..+....+|+|.+..+.. .........++...++..+++.+|+.+..+++..+||-||||||.|||||+.+|++
T Consensus 113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L 192 (257)
T COG1119 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL 192 (257)
T ss_pred HHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE
Confidence 53 345567788887765432 11111122356677889999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-------CcchHHHHHHH---HHHHHhcCeeecCC
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-------NLHHVERARTV---DALLKELGLLKCRP 205 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-------~~h~~~~~~~~---~~~l~~g~~~~~~~ 205 (212)
||||||++ ||..+++.+.+.|.++.... +||+.|++..+ ...+++|++++.|.
T Consensus 193 LiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999 99999999999999997652 48999988654 24788999888763
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.7e-42 Score=317.51 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=177.6
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---c----cc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---L----MV 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~----~~ 69 (212)
++++++.|++ ..+|+++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... . .+
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~ 85 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-TSGTYRVAGQDVATLDADALAQLRR 85 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEcCcCCHHHHHHHHh
Confidence 4789999953 4699999999999999999999999999999999999998 699999999987542 1 14
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
+.++|+||++.+++.+|+.||+.+..... .....+..+++.++++.+|+.+..++.+.+||+||+||++|||||+.+
T Consensus 86 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 86 EHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999998754322 223445566789999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 150 QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 150 p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+++||||||+ ||+.+++.+.++|++++++. .+|+.+.+..++ .+|++|+++++|++++..
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999 99999999999999987543 379998775444 367899999999988765
No 298
>KOG0057|consensus
Probab=100.00 E-value=2.2e-43 Score=309.93 Aligned_cols=197 Identities=22% Similarity=0.310 Sum_probs=166.4
Q ss_pred cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+|++..|++++ +|+++||+|++||.+||+|+|||||||++|+|.+++. .+|+|.+||++++. ..+|+.||||||
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 58899998876 9999999999999999999999999999999999887 49999999999854 457889999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al 146 (212)
+..+|++ |+..|+.++... .+ .+++.++.++.|+.+ ....+...|||||||||+||||+
T Consensus 433 d~~LFnd-TIl~NI~YGn~s-----as----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 433 DSVLFND-TILYNIKYGNPS-----AS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred cccccch-hHHHHhhcCCCC-----cC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 9998877 999999986432 11 334555666666644 33445567999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~ 210 (212)
+.+|+|+++||||| ||..+.+++++.+....... ..|++..+..++. ++++|++...|+.+|+-
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 99999999999999 99999999999998843332 2599999988764 78899999999988874
No 299
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-42 Score=311.84 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=162.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+|+||++++|++++|+||||||||||+++|+|+.++.++|+|+++|+++... ..++.++|++
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 342 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVS 342 (490)
T ss_pred EeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEEC
Confidence 468899998888999999999999999999999999999999999976532489999999876321 2345799999
Q ss_pred CCCCCCC--CCCHHHHHHHHHhh--hcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 77 QHDLTVD--TLTVHEHMTLMARL--KMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 77 Q~~~~~~--~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
|++.+++ ..++.+++.+.... ....... ....+.+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 343 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 421 (490)
T PRK10938 343 SSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT 421 (490)
T ss_pred HHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9876543 34676665543210 0000111 233456889999999987 8899999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHH-H-H--HHHHhcCeeecCC
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERART-V-D--ALLKELGLLKCRP 205 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~-~-~--~~l~~g~~~~~~~ 205 (212)
+|||||||+ ||+.++..++++|++++++. .+||++.+.. + + .+|++|+++....
T Consensus 422 lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 422 LLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999999 99999999999999997653 2699998865 2 2 4788999876654
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.8e-42 Score=279.55 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=141.6
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEE
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSG 73 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~ 73 (212)
.++++.|+ +..+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEE
Confidence 46788886 45799999999999999999999999999999999999988 699999999876421 1345699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHH
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~l 142 (212)
|++|++.++ ..|++||+.+.... .. ....++++.+++.+ ..+.++..||||||||++|
T Consensus 83 ~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03290 83 YAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICV 151 (218)
T ss_pred EEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHH
Confidence 999999877 57999999864211 11 12234445555432 2356789999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHH--HHHHHHhhc-----CcchHHHHHH
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMT--LMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~--~l~~l~~~~-----~~h~~~~~~~ 190 (212)
||||+.+|+++||||||+ ||+.++..+++ +++.+++.. .+|+.+.+..
T Consensus 152 aral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~ 207 (218)
T cd03290 152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH 207 (218)
T ss_pred HHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence 999999999999999999 99999999998 666665532 2699887643
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=313.90 Aligned_cols=194 Identities=20% Similarity=0.253 Sum_probs=163.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|++.| ++|+|.++|. +.+||++|++.
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~--------~~i~~~~q~~~ 392 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-DSGTVKWSEN--------ANIGYYAQDHA 392 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCc--------eEEEEEccccc
Confidence 36889999888899999999999999999999999999999999999998 6999999873 35899999864
Q ss_pred --CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 81 --TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 81 --~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
+++.+|+.+|+.+... .. .....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 393 ~~~~~~~t~~~~~~~~~~----~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQ----EG----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred ccCCCCCcHHHHHHHhcc----CC----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5567899999864211 00 1234678899999994 67899999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCee-ecCCchhhhc
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLL-KCRPADELNR 211 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~-~~~~~~~~~~ 211 (212)
||+ ||+.++..++++|+++... ..|||.+.+... + .+|++|+++ .+|+++++.+
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999 9999999999999887321 137999988764 2 478899987 8888887654
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.3e-42 Score=314.26 Aligned_cols=200 Identities=19% Similarity=0.123 Sum_probs=162.5
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..+||++|++
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~--------~~i~~v~Q~~ 77 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNGEARPAPG--------IKVGYLPQEP 77 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCC--------CEEEEEeccC
Confidence 478999997 77899999999999999999999999999999999999998 6999998752 3589999999
Q ss_pred CCCCCCCHHHHHHHHHhh-hc----------ccCCCHHH----------------------HHHHHHHHHHHcCCccccC
Q psy8250 80 LTVDTLTVHEHMTLMARL-KM----------DRNLHHVE----------------------RARTVDALLKELGLLKCKN 126 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~-~~----------~~~~~~~~----------------------~~~~~~~~l~~~gl~~~~~ 126 (212)
.+++.+|+.||+.++... .. ....+..+ ...++.++++.+|+.. .+
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 156 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD 156 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence 999999999999874321 00 00000000 1235667888888854 68
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCe
Q psy8250 127 SVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGL 200 (212)
Q Consensus 127 ~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~ 200 (212)
+++.+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++... .++|+.+.+... + .+|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 8999999999999999999999999999999999 9999999999999887421 137999988764 3 36789987
Q ss_pred e-ecCCchhhh
Q psy8250 201 L-KCRPADELN 210 (212)
Q Consensus 201 ~-~~~~~~~~~ 210 (212)
+ +.|+.+++.
T Consensus 237 ~~~~g~~~~~~ 247 (552)
T TIGR03719 237 IPWEGNYSSWL 247 (552)
T ss_pred EEecCCHHHHH
Confidence 5 678877653
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-42 Score=279.23 Aligned_cols=172 Identities=20% Similarity=0.276 Sum_probs=137.2
Q ss_pred CcccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE
Q psy8250 1 METFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v 75 (212)
++++++.|++. .+|+++||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++| .++|+
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g----------~i~~~ 71 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPG----------SIAYV 71 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcC----------EEEEE
Confidence 46899999764 699999999999999999999999999999999999998 699999998 48999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+|++.++ ..|++||+.+.... ....... .+.+.+..+ ++....++++.+||+|||||++|||||+.
T Consensus 72 ~q~~~l~-~~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 72 SQEPWIQ-NGTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred ecCchhc-cCcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999887 46999999874221 1111111 112222222 34445667789999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHH-HHHHHHhhc-----CcchHHHHHH
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMT-LMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~-~l~~l~~~~-----~~h~~~~~~~ 190 (212)
+|+++||||||+ ||+.+++.+++ +++++..+. .+|+.+.+..
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 999999999999 99999999998 566664432 2699887754
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-42 Score=270.08 Aligned_cols=148 Identities=24% Similarity=0.385 Sum_probs=130.9
Q ss_pred CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++. .+++++||++++|++++|+||||||||||+++|+|+++| .+|+|+++|.++.. ..+++.++|+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 46889999876 799999999999999999999999999999999999998 69999999998743 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+++ .|++||+ ||+|||||++|||||+.+|+++||
T Consensus 82 ~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~la~al~~~p~llll 120 (171)
T cd03228 82 PQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIAIARALLRDPPILIL 120 (171)
T ss_pred cCCchhcc-chHHHHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99987775 5888876 999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
||||+ ||+.++..+.++|+++++.. .+|+.+.+..
T Consensus 121 DEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred ECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 99999 99999999999999986532 2799888754
No 305
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-41 Score=334.23 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=174.5
Q ss_pred cccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC---CCCceEEEECCEeCCcccccceEEE
Q psy8250 2 ETFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSGF 74 (212)
Q Consensus 2 ~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~---p~~~G~I~~~g~~~~~~~~~~~i~~ 74 (212)
+++++.|+ ++.+|+|||+++++|+++||+|||||||||||++|+|+.+ | ++|+|.+||+++.. ..++.+||
T Consensus 763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~-~~G~I~i~G~~~~~-~~~~~i~y 840 (1394)
T TIGR00956 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI-TGGDRLVNGRPLDS-SFQRSIGY 840 (1394)
T ss_pred EeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCc-ceeEEEECCEECCh-hhhcceee
Confidence 56677774 4579999999999999999999999999999999999987 5 58999999999853 45678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC----CCChHHHHHHHHHHHHhhCC
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----~LSgGqrqRv~lA~al~~~p 150 (212)
|+|++.+++.+||+||+.+.+.++.....+..+..++++++++.+++.+..++.++ +||||||||++||+||+.+|
T Consensus 841 v~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P 920 (1394)
T TIGR00956 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP 920 (1394)
T ss_pred ecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCC
Confidence 99998889999999999998766533334455666789999999999998998887 79999999999999999999
Q ss_pred C-eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH--HHHH--HHHHhc-CeeecCCchh
Q psy8250 151 S-GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA--RTVD--ALLKEL-GLLKCRPADE 208 (212)
Q Consensus 151 ~-llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~--~~~~--~~l~~g-~~~~~~~~~~ 208 (212)
+ +|||||||+ ||+.++..++++|++++.++ .+|+++.. ...+ .+|++| ++++.|++++
T Consensus 921 ~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 7 999999999 99999999999999997653 26998753 2233 468887 9999998754
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=305.37 Aligned_cols=203 Identities=14% Similarity=0.136 Sum_probs=163.1
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEcC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~Q 77 (212)
+++++.+ +.+|++|||++++||++||+||||||||||+++|+|+.+| ++|+|+++|+++.... .++.++|+||
T Consensus 254 ~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 254 RNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-SAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred eCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-CccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 5677763 4699999999999999999999999999999999999998 6999999999885321 2455899999
Q ss_pred CC---CCCCCCCHHHHHHHHH-h-hhcccC-CCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 78 HD---LTVDTLTVHEHMTLMA-R-LKMDRN-LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 78 ~~---~~~~~ltv~e~l~~~~-~-~~~~~~-~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
++ .+++++|+.+|..+.. . ...... .........+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 85 4688888887743321 1 100001 12233455678899999995 5679999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCch
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPAD 207 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~ 207 (212)
++|||||||+ ||+.++..++++|.+++.++ .+||++++...+ .+|++|+++..++.+
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999 99999999999999987654 379999887642 467899998776543
No 307
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-41 Score=288.52 Aligned_cols=208 Identities=20% Similarity=0.276 Sum_probs=179.4
Q ss_pred CcccccccC----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC----CceEEEECCEeCCc---ccc-
Q psy8250 1 METFHPLFG----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEK---NLM- 68 (212)
Q Consensus 1 ~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~----~~G~I~~~g~~~~~---~~~- 68 (212)
++|+++.|+ ...++++|||++.+||.+||+|+||||||-..+.|+++++.+ .+|+|.|+|.++-. ..+
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr 88 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR 88 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHh
Confidence 468899886 567999999999999999999999999999999999998631 38999999998732 222
Q ss_pred ---cceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChHHHHHH
Q psy8250 69 ---VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRV 140 (212)
Q Consensus 69 ---~~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgGqrqRv 140 (212)
-..|+++||+|. +.|-.|+...+....+++ ++.++++.+.++.++|+.+|+.+ ..+.+|++|||||||||
T Consensus 89 ~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 89 GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred hhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 246999999985 567778888888777665 45678888999999999999964 57889999999999999
Q ss_pred HHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhh
Q psy8250 141 ALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELN 210 (212)
Q Consensus 141 ~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~ 210 (212)
+||+||+.+|++||.||||+ ||...+.+|+++|++++.+. .|||+..++... .+|.+|+++..|+.+.+-
T Consensus 167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 99999999999999999999 99999999999999999875 389999998753 489999999999987763
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.2e-42 Score=341.35 Aligned_cols=201 Identities=16% Similarity=0.228 Sum_probs=163.4
Q ss_pred CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--------------------------
Q psy8250 1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-------------------------- 51 (212)
Q Consensus 1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~-------------------------- 51 (212)
+++|+++|. +.++|+|+||+|++|+++||+||||||||||+++|.|++.|.
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 368899995 347999999999999999999999999999999999999972
Q ss_pred ---------------------------CceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250 52 ---------------------------VDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR 101 (212)
Q Consensus 52 ---------------------------~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~ 101 (212)
++|+|.+||.++.. ..+++.++||+|+|.+|+. |++||+.++..
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~----- 1321 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE----- 1321 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----
Confidence 49999999999854 4578899999999999865 99999998632
Q ss_pred CCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH
Q psy8250 102 NLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH 169 (212)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~ 169 (212)
..+ .+.+.++++..+ ++.........||||||||++|||||+++|+||||||||| ||+.+.+.+
T Consensus 1322 ~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I 1397 (1466)
T PTZ00265 1322 DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397 (1466)
T ss_pred CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 111 122344444443 3444445556799999999999999999999999999999 999999999
Q ss_pred HHHHHHHH--hhc----CcchHHHHHHHH--HHHHh----cCee-ecCCchhhhc
Q psy8250 170 MTLMARLK--MDR----NLHHVERARTVD--ALLKE----LGLL-KCRPADELNR 211 (212)
Q Consensus 170 ~~~l~~l~--~~~----~~h~~~~~~~~~--~~l~~----g~~~-~~~~~~~~~~ 211 (212)
.+.|.++. +.. ++|.++.++.++ .+|++ |+++ +.|+.+|+-+
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999985 222 379998887765 46778 8855 7999998853
No 309
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3e-42 Score=312.98 Aligned_cols=180 Identities=23% Similarity=0.269 Sum_probs=148.2
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++.|++ +.+|+|+||++++|+.++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..+++.++||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEehhhCCHHHHHhheEEE
Confidence 3688999965 3699999999999999999999999999999999999999 69999999998854 3567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
+|++.+|+. |++||+.++... .+ ++.+.++++.+++. ........+||||||||++|||
T Consensus 402 ~Q~~~lf~~-ti~~Ni~~~~~~-----~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 402 PQHPFLFAG-TIAENIRLARPD-----AS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred cCCCcccCc-CHHHHHhccCCC-----CC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 999998875 999999875321 11 23344555555543 3334456789999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV 191 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~ 191 (212)
||+++|+++||||||+ +|+.+.+.+.+.+.++.... .+|+++.+..+
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 523 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERA 523 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence 9999999999999999 99999999999999986433 37998776543
No 310
>KOG0061|consensus
Probab=100.00 E-value=1e-40 Score=306.37 Aligned_cols=201 Identities=35% Similarity=0.559 Sum_probs=180.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC--CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
.+++|++||.++++||++||+|||||||||||++|+|.... ..+|+|.+||++.....+++..|||.|+..+++.+||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 46799999999999999999999999999999999999864 2699999999888777788899999999999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCC-----CCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN-----VLSGGERKRVALAVQTIIVQSGFVPQHDLT-V 161 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqrqRv~lA~al~~~p~llilDEPt~-l 161 (212)
+|++.|.+.++.+...+..+...+++++++++|+..+.|+.++ .+|||||+||+||.-|+.+|++|++||||+ |
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 9999999998877666788899999999999999999999986 599999999999999999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC-----cchHH-HHH-HHH--HHHHhcCeeecCCchhhh
Q psy8250 162 DTLTVHEHMTLMARLKMDRN-----LHHVE-RAR-TVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~-----~h~~~-~~~-~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|..+..++.+.|+++++++. .|+.. ++- ..+ .+|.+|++++.|+++++-
T Consensus 202 DS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred chhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999998742 48864 332 233 578899999999988753
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.2e-41 Score=271.90 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=147.3
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-ECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|. ++|..+ .+.+.+.+++.+|+.||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 379999999999999999999999999999999999988 699997 776533 12345678889999999
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH 169 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~ 169 (212)
+.+....+. ....+. ...+.+.+++....++++.+||+|||||++|||||+.+|+++|||||++ +|+.++..+
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 998665432 222221 2234456788888899999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 170 MTLMARLKMDR----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 170 ~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
.+.+.+..++. .+|+++.+... + .+|++|++++.++.++..
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 99876543332 37999988653 3 478899999999887764
No 312
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-40 Score=275.80 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=139.2
Q ss_pred cceeeeeEEEEc-----CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCC
Q psy8250 11 TNYKESLSGIAE-----SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL 85 (212)
Q Consensus 11 ~~~l~~vs~~i~-----~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~l 85 (212)
...++++++++. +|++++|+||||||||||+++|+|+++| ++|+|.++|. .++|++|++..++.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-DEGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCc---------eEEEecccccCCCCC
Confidence 346677777765 7999999999999999999999999998 6999999985 479999998877888
Q ss_pred CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL 164 (212)
Q Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~ 164 (212)
|+.|++.+...... . ....+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+ ||+.
T Consensus 77 tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 77 TVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred CHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99999876432110 0 12235778999999988999999999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHhh-c-----CcchHHHHHHH
Q psy8250 165 TVHEHMTLMARLKMD-R-----NLHHVERARTV 191 (212)
Q Consensus 165 ~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~ 191 (212)
++..+.++|++++.+ . ++|+++.+...
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999998754 2 37999988764
No 313
>KOG0055|consensus
Probab=100.00 E-value=4e-42 Score=325.23 Aligned_cols=209 Identities=19% Similarity=0.291 Sum_probs=172.0
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
++++++.|.. ..+|+|+||++++|+.+||||||||||||.+.+|-.++.| ++|.|.+||.++.. ..+|+++|.
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCHHHHHHhcce
Confidence 3688899964 4699999999999999999999999999999999999999 69999999999865 356889999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
|.|+|.+|.. |++||+.++..-........+.....+.+++..+ |.+.....+..+||||||||++||||++++|+|
T Consensus 1069 VsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1069 VSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred eccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 9999999876 9999999982110000011122223344455544 555566666779999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||.|| ||.++.+.+-+.|.+....++ .|.+..++.+| .++++|++++.|+.+++-.
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999 999999999999999886543 59999998875 5899999999999998753
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-42 Score=340.85 Aligned_cols=199 Identities=18% Similarity=0.188 Sum_probs=166.6
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++| ++|+|.+||.++.. ..+|++++||
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEE
Confidence 3688999953 4699999999999999999999999999999999999999 69999999999854 3568889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|+. |++||+..+. ..+ ++.+.++++..++. ........+||||||||++|||
T Consensus 1316 pQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1316 PQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred CCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 999999987 9999997532 111 23455556655553 3334445689999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+||||||||+ +|+.+.+.+.+.|++..+.. .+|.++.+..++. +|++|++++.|+++++.+
T Consensus 1385 ALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1385 ALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999999875433 2699999888764 788999999999998853
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-41 Score=307.11 Aligned_cols=196 Identities=21% Similarity=0.189 Sum_probs=160.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|++++ ++ .+||+||++
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~-~~-------~i~~v~q~~~ 397 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-DSGTIKIGE-TV-------KLAYVDQSRD 397 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECC-ce-------EEEEEeCchh
Confidence 36889999888899999999999999999999999999999999999998 699999954 21 489999996
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+++.+|+.||+.+...... .... ...+..+++.+++.. ..++++.+||||||||++|||||+.+|++||||||
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred hcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 67888999999987643211 1111 123457899999964 57999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHh-cCee-ecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKE-LGLL-KCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~-g~~~-~~~~~~~~~ 210 (212)
|+ ||+.++..++++|.++... ..|||++.+... + .+|++ |++. ..|+.++.-
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 99 9999999999999987421 137999988764 3 35765 6664 577776543
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-41 Score=262.21 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=128.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ..++.++|+|
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 46899999888899999999999999999999999999999999999998 699999999987532 2345688888
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
| ||+||+||++|||||+.+|+++|||
T Consensus 82 q------------------------------------------------------LS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 82 Q------------------------------------------------------LSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred e------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8 9999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeee
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLK 202 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~ 202 (212)
|||+ ||+.+++.+.++|++++++. .+|+.+.+... + .++++|++++
T Consensus 108 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999 99999999999999997543 26999877653 3 3567777653
No 317
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-41 Score=339.30 Aligned_cols=199 Identities=19% Similarity=0.180 Sum_probs=166.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|.+ ..+|+||||+|++||.+||+||||||||||+++|.|++.| ++|+|.+||.++.. ..+|+++++|
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-ERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCEecccCCHHHHHhccEEE
Confidence 3688999964 3699999999999999999999999999999999999999 69999999999864 3567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|.. |++||+..+.. . .++.+.++++..++. ........+||||||||++|||
T Consensus 1319 pQdp~LF~G-TIreNLd~~~~------~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130 1319 PQAPVLFSG-TVRFNLDPFNE------H----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred CCCCccccc-cHHHHhCcCCC------C----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence 999999987 99999975321 1 123455555555543 3334445689999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+||||||||+ +|..+.+.+.+.|++..+.. .+|.++.+..++ .+|++|++++.|+++++.+
T Consensus 1388 ALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999 99999999999999875443 269999988776 4789999999999998853
No 318
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=301.63 Aligned_cols=200 Identities=22% Similarity=0.278 Sum_probs=171.1
Q ss_pred CcccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++|++++|.+.. +|+|+||++++||.++|+|+||||||||+.+|+|.+.| ++|+|.++|.++.. ..++..++++
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-CCCeeeECCcChhhCChhhHHHHHhhh
Confidence 478999997654 99999999999999999999999999999999999999 69999999998853 3367789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~ 144 (212)
+|.+.+|.. |+++|+.+...- ..++.+.++++++|+.+.. +.-...|||||+||++|||
T Consensus 418 ~Qr~hlF~~-Tlr~NL~lA~~~---------AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 418 TQRVHLFSG-TLRDNLRLANPD---------ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred ccchHHHHH-HHHHHHhhcCCC---------CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 999999877 999999875321 2345677888888886543 3334679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
+|+++.+++||||||. ||+.+.+++++++.+-.+.. +||++..+...+. +|++|+++.+|.+.++-+
T Consensus 488 ~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 488 ALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999999999999999 99999999999998765542 4899998888775 788999999999888754
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.5e-41 Score=281.80 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=146.2
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++. ++.+|+++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++| .++|++|++.+
T Consensus 43 ~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g----------~i~yv~q~~~l 109 (282)
T cd03291 43 SNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSG----------RISFSSQFSWI 109 (282)
T ss_pred EEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECC----------EEEEEeCcccc
Confidence 456653 45799999999999999999999999999999999999998 699999988 28999999988
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
++. |+.||+.+.... .. ..+.++++.+++.+ ..++.+.+||+|||||++|||||+.+|
T Consensus 110 ~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p 178 (282)
T cd03291 110 MPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA 178 (282)
T ss_pred ccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 775 999999864221 00 11122333333322 234456799999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+++||||||+ ||+.++..+++.+ .+++... .+|+.+.+..++ .+|++|+++..|+++++.+
T Consensus 179 ~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 179 DLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999 9999999998754 5565432 279998775433 3788999999999887753
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.5e-41 Score=305.77 Aligned_cols=195 Identities=21% Similarity=0.181 Sum_probs=159.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
++++++.|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|++++ ++ .+||++|++
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~G~i~~~~-~~-------~i~~v~q~~~ 395 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-DSGTIKIGE-TV-------KLAYVDQSRD 395 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEECC-ce-------EEEEEeCCcc
Confidence 36889999888899999999999999999999999999999999999998 699999954 21 489999986
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+++.+|+.||+.++..... .... ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 396 ~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 396 ALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred ccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 47888999999987643211 1111 223557899999964 57899999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHh-cCee-ecCCchhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKE-LGLL-KCRPADEL 209 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~-g~~~-~~~~~~~~ 209 (212)
|+ ||+.++..++++|+++... .++||++.+... + .+|++ |++. ..|+.++.
T Consensus 471 t~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 471 TNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 99 9999999999999998421 137999988764 3 35765 4654 56666654
No 321
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-40 Score=327.38 Aligned_cols=199 Identities=24% Similarity=0.365 Sum_probs=168.2
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
+.+.+|+|||+++++|++++|+|||||||||||++|+|...+ ..+|+|.++|.+......++.+||++|++.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 455799999999999999999999999999999999998753 1589999999887544456679999999999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCC-----CCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V 161 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l 161 (212)
+||+.+.+.++.....+..+..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|||||||+ |
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 999999876543323344555677999999999998888886 5899999999999999999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhc-----CcchHHH-HHH-HH--HHHHh-cCeeecCCch
Q psy8250 162 DTLTVHEHMTLMARLKMDR-----NLHHVER-ART-VD--ALLKE-LGLLKCRPAD 207 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~-----~~h~~~~-~~~-~~--~~l~~-g~~~~~~~~~ 207 (212)
|+.++..++++|+++++++ .+|+.+. +.. .+ .+|++ |++++.|+++
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999999999999998764 2699863 333 33 46776 8999999864
No 322
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.5e-40 Score=259.91 Aligned_cols=146 Identities=23% Similarity=0.217 Sum_probs=127.3
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+|+++||++++|++++|+||||||||||+++|+|+++| ++|+|.++|. +.++|++|++
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~--------~~i~~~~q~~ 73 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEG--------EDLLFLPQRP 73 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCC--------ceEEEECCCC
Confidence 468899995 46799999999999999999999999999999999999998 6999999873 4689999998
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.++ ..|+.||+.+. ++.+||||||||++|||||+.+|+++||||||
T Consensus 74 ~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 74 YLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred ccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 765 57999998642 35799999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh--cCcchHHHHH
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD--RNLHHVERAR 189 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~ 189 (212)
+ ||+.+++.+.++|+++... ..+|+.+...
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLWK 152 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence 9 9999999999999987321 1379987543
No 323
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-41 Score=264.88 Aligned_cols=203 Identities=25% Similarity=0.322 Sum_probs=167.3
Q ss_pred cccccccC-----CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc---cceEE
Q psy8250 2 ETFHPLFG-----DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM---VKVSG 73 (212)
Q Consensus 2 ~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~---~~~i~ 73 (212)
.+..+.|. .+++|+++|++|.+|+++.|+|.||||||||+++|+|-+.| ++|+|.++|.+++.... ...++
T Consensus 5 ~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~RA~~la 83 (263)
T COG1101 5 SNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAKRANLLA 83 (263)
T ss_pred ccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHHHhhHHH
Confidence 34555553 35799999999999999999999999999999999999999 69999999999976543 33467
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHhhhcccCCCHH---HHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 74 FVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV---ERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 74 ~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
-|||+| ..++.+|+.||+.++......++++.. ...+...+-++.+ |+++.++.+++-|||||||-+++++|.
T Consensus 84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt 163 (263)
T COG1101 84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT 163 (263)
T ss_pred HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence 899998 468999999999987654333333332 2233344555665 568899999999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCC
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRP 205 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~ 205 (212)
++.|++|+|||-|+ |||.....++++-.++.+++ +||+++.|..+ ..+||+|+|+.+-.
T Consensus 164 l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 164 LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999 99999999999999987764 48999999776 34899999987754
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.7e-41 Score=334.76 Aligned_cols=199 Identities=17% Similarity=0.166 Sum_probs=166.2
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|.. ..+|+||||+|++||.+||+|+||||||||+++|.|++.| ++|+|.+||.++.. ..+|+++++|
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i~iV 1365 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKITII 1365 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcCeEE
Confidence 3688999964 4699999999999999999999999999999999999999 69999999999864 3568889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|+. |+++|+.... ..+ ++.+.++++.+++. .........||||||||++|||
T Consensus 1366 pQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1366 PQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred CCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence 999999987 9999996321 111 23355566665553 3333444679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+||||||||+ +|+.+...+.+.|++..+.. .+|.++.+..++. +|++|++++.|+++++.+
T Consensus 1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999998875443 3699999888764 788999999999999754
No 325
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4e-40 Score=301.66 Aligned_cols=184 Identities=20% Similarity=0.190 Sum_probs=156.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++. .|+++||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++ + .++|+||++.
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-~~G~I~~~---~-------~i~y~~Q~~~ 410 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-DEGEVDPE---L-------KISYKPQYIK 410 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEe---e-------eEEEeccccc
Confidence 36788889775 59999999999999999999999999999999999998 69999986 1 4899999988
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+||.+|+.+..... . ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 411 ~~~~~tv~e~l~~~~~~~-----~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 411 PDYDGTVEDLLRSITDDL-----G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred CCCCCcHHHHHHHHhhhc-----C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 888999999998753211 1 12246789999999988999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-HH--HHHhcCeeecCC
Q psy8250 161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-DA--LLKELGLLKCRP 205 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~~--~l~~g~~~~~~~ 205 (212)
||+.++..+.++|++++.+ . .+||++++... +. ++ +|++...|+
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl-~~~~~~~g~ 536 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF-EGEPGKHGH 536 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-cCcceeeee
Confidence 9999999999999999764 2 37999988764 32 44 556665553
No 326
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.7e-41 Score=332.42 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=166.5
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|.+ ..+|+||||+|++||.+||+|+||||||||+++|.|++.| ++|+|.+||.++.. ..+++.++||
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-CGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccCCHHHHHhcceEE
Confidence 3688999954 3599999999999999999999999999999999999999 69999999999864 3578899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|+. |+++||.... .. .++.+.++++.+++.+.. .....+||||||||++|||
T Consensus 1390 pQdp~LF~g-TIreNIdp~~------~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1390 PQDPVLFDG-TVRQNVDPFL------EA----SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred CCCCccccc-cHHHHhCccc------CC----CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence 999999887 9999996421 11 134567777777765432 2334579999999999999
Q ss_pred HHhhC-CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHH--HHHhcCeeecCCchhhh
Q psy8250 145 QTIIV-QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDA--LLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~-p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~ 210 (212)
||+++ |++|||||||+ +|+.+.+.+.+.|++..+.. ++|.++.+..++. +|++|++++.|+++++.
T Consensus 1459 ALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99996 89999999999 99999999999998875433 3699998887764 78899999999999985
No 327
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-40 Score=272.13 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=169.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEc-CCCCCCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTVDTLT 86 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~-Q~~~~~~~lt 86 (212)
...+++||||+|++|+++|++|||||||||+||+++|++.| ++|.|.++|.+... ...-+.+++|+ |...++..+.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 34589999999999999999999999999999999999999 69999999987643 23345567664 5556666667
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhh
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLT 165 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~ 165 (212)
+.+.+.....++ .++.++-.++...+.+.++++...+.+++.||.|||.|+.||.||+++|++|+|||||- ||..+
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a 191 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA 191 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH
Confidence 777776655444 35667778889999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhhc------CcchHHHHHHHH---HHHHhcCeeecCCchhhhcC
Q psy8250 166 VHEHMTLMARLKMDR------NLHHVERARTVD---ALLKELGLLKCRPADELNRQ 212 (212)
Q Consensus 166 ~~~~~~~l~~l~~~~------~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~~ 212 (212)
+..+.+.++++.++. .||++..+.+.+ ..|+.|+++++|+.+.+.+|
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999999998764 379998887753 47889999999999988764
No 328
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=249.85 Aligned_cols=185 Identities=20% Similarity=0.292 Sum_probs=160.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcc-cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKN-LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~-~~~~~i~~v~Q 77 (212)
+++++...++..+|-++||+|.+||++-|+||||||||||+..+.|.+.+. .+|++++++++++.. ..++++|++||
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQ 84 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQ 84 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeec
Confidence 468888889999999999999999999999999999999999999998763 489999999998653 45788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++.+||.++|.+|+.|.... .+....++..+..+|++.|++...++.|.+||||||-||++-|+|+..|+.++|||
T Consensus 85 D~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 85 DALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred ccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999885432 12233566778899999999999999999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHH-Hhh-----cCcchHHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARL-KMD-----RNLHHVERAR 189 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l-~~~-----~~~h~~~~~~ 189 (212)
|+| ||..-+.++.++.-.- +.. .+|||.+.+.
T Consensus 161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999 9999999998886543 332 2489987664
No 329
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7e-40 Score=254.05 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=173.0
Q ss_pred cccccccCC---------cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---ccc
Q psy8250 2 ETFHPLFGD---------TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMV 69 (212)
Q Consensus 2 ~~l~~~~~~---------~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~ 69 (212)
++++|.|.+ ..+++.|||++++|+.+||||.||||||||.|+|+|+++| ++|+|.+||+++.-. .+.
T Consensus 8 ~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy~~R~ 86 (267)
T COG4167 8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGEILINDHPLHFGDYSFRS 86 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-CCceEEECCccccccchHhhh
Confidence 577777743 2489999999999999999999999999999999999999 799999999988432 345
Q ss_pred ceEEEEcCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 70 KVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 70 ~~i~~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
++|-++||+|. +.|.+.+..-+..+.++. ..+....+.+++.+-|..+|+ .+..+-++..||.||||||++||||
T Consensus 87 k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL 164 (267)
T COG4167 87 KRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL 164 (267)
T ss_pred hheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence 78999999985 456666666666665543 345566777889999999998 4578899999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
+.+|+++|.||... ||...+.++.+++.+++++.+ +.|+..++-. ..+|++|++++.|++.++-
T Consensus 165 IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999 999999999999999988754 4666655433 3589999999999988763
No 330
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.8e-40 Score=272.87 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=156.0
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCcc--c
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-----------LNGLEVEKN--L 67 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-----------~~g~~~~~~--~ 67 (212)
.+++++|+++ .+++|+|+ +.+|++++|+||||||||||+++|+|+++| ++|+|+ ++|.++... .
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHH
Confidence 3689999765 59999995 999999999999999999999999999999 699996 778776432 1
Q ss_pred -cc--ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH
Q psy8250 68 -MV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 68 -~~--~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
.+ ..++|++|...+++. ++.+++.+... .......+.++++.+|+.+..++.+.+||+|||||++|||
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 152 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAA 152 (255)
T ss_pred hhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 11 237899998877774 78888765321 1223456789999999998889999999999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-HH--HHHhcCeeecC
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-DA--LLKELGLLKCR 204 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~~--~l~~g~~~~~~ 204 (212)
||+.+|+++||||||+ ||+.++..+.++|++++++. .+|+++.+... +. +| +|++.++|
T Consensus 153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999 99999999999999997653 27999988753 32 34 66666544
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=303.56 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=158.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
++++++.|+++.+|+|+||+|.+|+++||+||||||||||+++|+|+++| ++|+|.+++. ..+||++|++
T Consensus 315 ~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~--------~~igy~~Q~~~ 385 (638)
T PRK10636 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSGEIGLAKG--------IKLGYFAQHQL 385 (638)
T ss_pred EEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCC--------EEEEEecCcch
Confidence 36889999988899999999999999999999999999999999999998 6999999742 2489999974
Q ss_pred -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
.+.+..|+.+++.. .. .......+.++++.+++. ...++++.+|||||||||+|||+|+.+|++|||||
T Consensus 386 ~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 386 EFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34556677776531 11 112245678999999996 46889999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchhh
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADEL 209 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~~ 209 (212)
||+ ||+.++..+.++|.++... .++||.+++...+ .+|++|+++ +.|+.++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999 9999999999999988321 1379999887643 467899986 78888776
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.5e-40 Score=299.94 Aligned_cols=188 Identities=19% Similarity=0.139 Sum_probs=153.2
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
+++++++|++ ..+|+|+||++++|+.++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|++
T Consensus 325 ~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred EEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 3688999964 5699999999999999999999999999999999999999 69999999999864 24677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC-----CCCCChHHHHHHHHHHHHhhCCC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
|++.+|+. |+++| . . ....+.+.++++.+++....... ..+||||||||++||||++.+|+
T Consensus 404 q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 404 TDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred cChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99988765 77776 0 0 12234567888999886543221 35899999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHh-hc-----CcchHHHHHHHH--HHHHhcCeeec
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKM-DR-----NLHHVERARTVD--ALLKELGLLKC 203 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~-~~-----~~h~~~~~~~~~--~~l~~g~~~~~ 203 (212)
++||||||+ ||+.+.+.+.+.+.+... .. .+|+++.+..++ .++++|+++..
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999 999999999988876532 22 279987766554 36779988765
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-39 Score=319.09 Aligned_cols=200 Identities=25% Similarity=0.322 Sum_probs=165.4
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CCCCceEEEECCEeCCcc--cccceEEEEcCCCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~~~~~~ 83 (212)
.+.+|+|||+++++||+++|+||||||||||||+|+|+. .| .+|+|.++|.++... ..++.++|++|++.+++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~-~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIG-VEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCC-ceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 356999999999999999999999999999999999986 35 699999999987432 34566999999999999
Q ss_pred CCCHHHHHHHHHhhhccc----CCCHHHHHHH-HHHHHHHcCCccccCCC-----CCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 84 TLTVHEHMTLMARLKMDR----NLHHVERART-VDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~----~~~~~~~~~~-~~~~l~~~gl~~~~~~~-----~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
.+||+|++.|.+.++... ....++..++ ++.+++.+||.+..+++ +..|||||||||+||+||+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999987654211 1233333333 46789999998877665 4679999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchH-HHHHH-HH--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHV-ERART-VD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~-~~~~~-~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||+ ||+.++..+++.|++++++ + .+|+. +.+.. .+ .+|++|++++.|+++++.
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999 9999999999999999864 2 25885 55544 33 478899999999998864
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=302.20 Aligned_cols=198 Identities=17% Similarity=0.147 Sum_probs=154.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+||||+|.+|+++||+||||||||||||+|+|++.| ++|+|.++|.. .++|++|++.
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~--------~i~~~~q~~~ 74 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNW--------QLAWVNQETP 74 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCC--------EEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999988 69999998742 3788888643
Q ss_pred CCCCCCHHHHHHHHHh-----------------------hhc-ccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChH
Q psy8250 81 TVDTLTVHEHMTLMAR-----------------------LKM-DRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGG 135 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG 135 (212)
.+ ..++.+++.-... +.. ...........++.++++.+|+. +..++++.+||||
T Consensus 75 ~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 75 AL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 33 2466555432100 000 00000012345688899999997 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchh
Q psy8250 136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADE 208 (212)
Q Consensus 136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~ 208 (212)
|||||+||+||+.+|++|||||||+ ||+.+...+.++|.++... .++||.+++..++ .+|++|++. +.|+.+.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999 9999999999999887321 1379999887643 467899885 4565443
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-40 Score=324.91 Aligned_cols=196 Identities=17% Similarity=0.229 Sum_probs=155.0
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE-CCEeCCc---ccccceEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL-NGLEVEK---NLMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~-~g~~~~~---~~~~~~i~ 73 (212)
++++++.|+. ..+|+|+||+|++|+++||+||||||||||+++|+|++.| ++|+|++ +|.++.. ..+++.+|
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~~~lr~~Ig 463 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWWRSKIG 463 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCHHHHHHhcc
Confidence 3688999974 3699999999999999999999999999999999999999 6999999 5677643 34567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhc---------cc------------------------------CC---------CH
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKM---------DR------------------------------NL---------HH 105 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~---------~~------------------------------~~---------~~ 105 (212)
||+|++.+|+. |++||+.++..... .. .. ..
T Consensus 464 ~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 542 (1466)
T PTZ00265 464 VVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQ 542 (1466)
T ss_pred Eecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccc
Confidence 99999999875 99999998531000 00 00 00
Q ss_pred HHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHH
Q psy8250 106 VERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLM 173 (212)
Q Consensus 106 ~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l 173 (212)
....+.+.++++.+++.+. ....+.+||||||||++|||||+++|++|||||||+ ||+.+...+.+.|
T Consensus 543 ~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L 622 (1466)
T PTZ00265 543 TIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622 (1466)
T ss_pred cCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 0122456777777776543 346678999999999999999999999999999999 9999999999999
Q ss_pred HHHHhh-c-----CcchHHHHHHHH--HHHHhc
Q psy8250 174 ARLKMD-R-----NLHHVERARTVD--ALLKEL 198 (212)
Q Consensus 174 ~~l~~~-~-----~~h~~~~~~~~~--~~l~~g 198 (212)
++++.+ . .+|+++.+..++ .+|++|
T Consensus 623 ~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 623 NNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999742 2 379998876544 367665
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.3e-40 Score=299.03 Aligned_cols=188 Identities=17% Similarity=0.113 Sum_probs=152.7
Q ss_pred cccccccCCc-----ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEE
Q psy8250 2 ETFHPLFGDT-----NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSG 73 (212)
Q Consensus 2 ~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~ 73 (212)
+++++.|++. .+|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++
T Consensus 341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~ 419 (555)
T TIGR01194 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSRDDYRDLFS 419 (555)
T ss_pred EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhhCc
Confidence 6788999752 599999999999999999999999999999999999999 69999999999864 24567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC------CCCCChHHHHHHHHHHHHh
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV------LNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~LSgGqrqRv~lA~al~ 147 (212)
|++|++.+|.. |+++|.. . ....+.+.++++.+++.+..+.. ...||||||||++||||++
T Consensus 420 ~v~q~~~lf~~-ti~~n~~--------~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall 486 (555)
T TIGR01194 420 AIFADFHLFDD-LIGPDEG--------E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWL 486 (555)
T ss_pred EEccChhhhhh-hhhcccc--------c----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence 99999988866 7777731 0 12344577889999987654433 3579999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHH-HHHHhh-c----CcchHHHHHHHH--HHHHhcCeeec
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLM-ARLKMD-R----NLHHVERARTVD--ALLKELGLLKC 203 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l-~~l~~~-~----~~h~~~~~~~~~--~~l~~g~~~~~ 203 (212)
.+|+++||||||+ ||+.+.+.+.+.+ +.++.. . .+|+++....++ .+|++|+++++
T Consensus 487 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 487 EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999 9999999998765 445432 2 279988766554 36778887643
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-39 Score=301.01 Aligned_cols=188 Identities=21% Similarity=0.253 Sum_probs=155.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
++++++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|+++| ++|+|++ |.++ .+||++|++
T Consensus 322 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~-~~~~-------~i~y~~q~~~ 392 (635)
T PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIHC-GTKL-------EVAYFDQHRA 392 (635)
T ss_pred EeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEE-CCCc-------EEEEEeCccc
Confidence 36899999988899999999999999999999999999999999999988 6999998 4432 489999985
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+++.+||.+|+.+..... ... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 393 ~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP 467 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP 467 (635)
T ss_pred ccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5888999999998743211 001 1134578899999996 568899999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHH-hcCeee
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLK-ELGLLK 202 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~-~g~~~~ 202 (212)
|+ ||+.++..+.++|+++... .++||.+++...+ .+++ +|++..
T Consensus 468 t~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 468 TNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 99 9999999999999887321 1379999886643 3565 687643
No 338
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-39 Score=249.78 Aligned_cols=179 Identities=24% Similarity=0.274 Sum_probs=156.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
.+++++..+...+|.++||++.+||++.|.||||||||||||+|+|+++| .+|+|+++|.++... ..++.+-|+-.+
T Consensus 5 a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-~~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 5 AENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-CCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 36889999999999999999999999999999999999999999999999 699999999988642 244667788888
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+=+.+|++||+.|+..++.. .....+.++++.+|+....|.++.+||-|||+||+|||-++..+++.|||||
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 8899999999999998877642 1245678999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVE 186 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~ 186 (212)
++ +|..+...+-.++..=..+. .||+.-
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99 99999999988886644333 267643
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.8e-39 Score=317.79 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=167.3
Q ss_pred ccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC---ceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 5 ~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~---~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
++.+ ++.+|+|||+.+++|++++|+||||||||||||+|+|.+.| . +|+|.++|.++.....++.++|++|++.+
T Consensus 173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~-~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDP-SLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CCcceeEEEECCEechhhcccceeEEecccccC
Confidence 3444 46799999999999999999999999999999999999987 5 89999999988654446779999999999
Q ss_pred CCCCCHHHHHHHHHhhhccc-------CCCHHHH------------------------HHHHHHHHHHcCCcccc-----
Q psy8250 82 VDTLTVHEHMTLMARLKMDR-------NLHHVER------------------------ARTVDALLKELGLLKCK----- 125 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~~gl~~~~----- 125 (212)
++.+||+|++.|.+.++... .....+. ...++.+++.+||.++.
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 99999999999987654211 0111110 11356789999998765
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cC-----cchH-HHHHH-HH--HH
Q psy8250 126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RN-----LHHV-ERART-VD--AL 194 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~-----~h~~-~~~~~-~~--~~ 194 (212)
++.+..|||||||||+||++|+.+|+++++||||+ ||+.++.++.+.|++++.+ +. +|+. +++.. .+ .+
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil 410 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL 410 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence 55678999999999999999999999999999999 9999999999999999764 22 5875 45544 33 47
Q ss_pred HHhcCeeecCCchhhh
Q psy8250 195 LKELGLLKCRPADELN 210 (212)
Q Consensus 195 l~~g~~~~~~~~~~~~ 210 (212)
|++|++++.|+++++.
T Consensus 411 L~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 411 LSEGQIVYQGPRDHIL 426 (1470)
T ss_pred eeCceEEEeCCHHHHH
Confidence 8899999999998875
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.2e-39 Score=298.76 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=152.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+||||+|++|+++||+||||||||||||+|+|++.| ++|+|.++|.. .++|++|.+.
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~--------~~~~l~q~~~ 76 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDL--------IVARLQQDPP 76 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCC--------EEEEeccCCC
Confidence 47899999998999999999999999999999999999999999999988 69999998632 2577777653
Q ss_pred CCCCCCHHHHHHHH------------------------------Hhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCC
Q psy8250 81 TVDTLTVHEHMTLM------------------------------ARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVL 129 (212)
Q Consensus 81 ~~~~ltv~e~l~~~------------------------------~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 129 (212)
.....++.+++... ..... ...........++.++++.+|+. .++++
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~ 154 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAAL 154 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCch
Confidence 33334555543210 00000 00000012345688899999996 37899
Q ss_pred CCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCee-e
Q psy8250 130 NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLL-K 202 (212)
Q Consensus 130 ~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~-~ 202 (212)
.+|||||||||+|||||+.+|++|||||||+ ||+.++..+.++|+++... .++||.+++... + ..|++|+++ +
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 9999999999999999999999999999999 9999999999999988421 137999988664 3 367899986 4
Q ss_pred cCCchhh
Q psy8250 203 CRPADEL 209 (212)
Q Consensus 203 ~~~~~~~ 209 (212)
.|+.++.
T Consensus 235 ~g~~~~~ 241 (635)
T PRK11147 235 PGNYDQY 241 (635)
T ss_pred cCCHHHH
Confidence 5766543
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-39 Score=322.72 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=165.7
Q ss_pred cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++|+. ..+|+||||+|++||.+||+|+||||||||+++|+|++. .+|+|.+||.++.. ..+++.++|||
T Consensus 1221 ~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~Ip 1298 (1490)
T TIGR01271 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298 (1490)
T ss_pred EEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEe
Confidence 678999964 679999999999999999999999999999999999985 48999999999864 34678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----------CCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqrqRv~lA~a 145 (212)
|+|.+|+. |+++|+.... .. .++.+.++++.+++.+... .....||||||||++||||
T Consensus 1299 Qdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1299 QKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred CCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 99999987 9999996421 11 2345677888877754322 2234799999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+++|+||||||||+ +|..+...+.+.|++..... .+|.++.+..++ .+|++|+++..|+|+++.+
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999 99999999999999875543 369999888766 4788999999999998853
No 342
>KOG0059|consensus
Probab=100.00 E-value=6.2e-39 Score=305.30 Aligned_cols=205 Identities=25% Similarity=0.385 Sum_probs=186.6
Q ss_pred cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
+++++.|+... +++++||.|++||+.|++|||||||||++++|+|...| ++|+++++|.++... ..++.+||.|
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~~~~~~~~iGyCP 646 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTDFQQVRKQLGYCP 646 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccchhhhhhhcccCC
Confidence 67899998877 99999999999999999999999999999999999999 699999999988542 3678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|...+++.+|.+|++.+++++++ ++..+..+.++..++.+++.+.++++++.+|||+|+|+++|.|++-+|++++||
T Consensus 647 Q~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD 723 (885)
T KOG0059|consen 647 QFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD 723 (885)
T ss_pred chhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence 99999999999999999998864 455666777999999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
|||+ +||.+++.+|+++.++++.. ++|.+|+++.. ..+|.+|++.+-|+++++.
T Consensus 724 EPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 724 EPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 9999 99999999999999998864 37999998764 3588899999999998875
No 343
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-39 Score=255.55 Aligned_cols=207 Identities=18% Similarity=0.200 Sum_probs=174.1
Q ss_pred CcccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc----cccceEE
Q psy8250 1 METFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN----LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~----~~~~~i~ 73 (212)
|+||+++-+++ .+|++||++|++||+++|+||||||||||.++|+|.- .+ ++|+|.++|+++... ..+.-+.
T Consensus 6 I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V-t~G~I~~~GedI~~l~~~ERAr~Gif 84 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPDERARAGIF 84 (251)
T ss_pred EeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE-ecceEEECCcccccCCHhHHHhcCCE
Confidence 57899999885 9999999999999999999999999999999999975 34 699999999999653 2345578
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCcc-ccCCCCC-CCChHHHHHHHHHHHHhhCC
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLK-CKNSVLN-VLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~-~LSgGqrqRv~lA~al~~~p 150 (212)
..||.|.-++..++.+.+......... ... ..+....+.+.++.+++++ +++|.++ .+|||||+|..|+..++.+|
T Consensus 85 LafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 85 LAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 889999999999999998876653211 111 2355677899999999976 7888886 69999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH----HHHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV----DALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~----~~~l~~g~~~~~~~~~~~~ 210 (212)
++.|||||-| ||..+.+.+.+.+++++.+. .||.-+.+... +.+|.+|+++..|.+ ++.
T Consensus 164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 9999999999 99999999999999999875 37886665543 247889999999998 443
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.8e-38 Score=295.87 Aligned_cols=194 Identities=19% Similarity=0.164 Sum_probs=155.0
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++| ++|+|++++. ..+||++|++
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-~~G~I~~~~~--------~~igyv~Q~~ 581 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-SSGTVFRSAK--------VRMAVFSQHH 581 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCceEEECCc--------eeEEEEeccc
Confidence 368899996 45699999999999999999999999999999999999998 6999998752 3589999986
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
++.+++.++..+...... ... ....+.++++.+|+.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus 582 --~~~l~~~~~~~~~~~~~~-~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 582 --VDGLDLSSNPLLYMMRCF-PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred --cccCCcchhHHHHHHHhc-CCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 234556666443221111 111 1345788999999974 67899999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH---HHHHhcCee-ecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD---ALLKELGLL-KCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~---~~l~~g~~~-~~~~~~~~~ 210 (212)
|+ ||+.++..+.+.|.++... .++||.+.+...+ .+|++|+++ +.|+.++..
T Consensus 655 T~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99 9999999998888775311 1379999887643 467899987 678877654
No 345
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.7e-38 Score=239.84 Aligned_cols=130 Identities=31% Similarity=0.494 Sum_probs=116.1
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
|+||||+|++|++++|+||||||||||+++|+|...| .+|.|.++|.++.. ...++.++|++|++.+++.+|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998 69999999999965 3456789999999999999999998
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCC----CCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
....++.++++.+++.+..++.+ .+||+|||||++|||||+.+|+++||||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12345778888888876655555 9999999999999999999999999999996
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.4e-38 Score=241.14 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=115.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++..+++++||++++||+++|+||||||||||+++|+|+++| ++|+|+++|. ..++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~--------~~i~~~~~--- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGST--------VKIGYFEQ--- 70 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCe--------EEEEEEcc---
Confidence 36889999887899999999999999999999999999999999999998 6999999985 35899988
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
||+||+||++|||||+.+|+++|||||++
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMD--RNLHHVERARTV 191 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~ 191 (212)
||+.++..+.+++++++.. ..+|+.+.+...
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~ 133 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQV 133 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 9999999999999987421 137998887553
No 347
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=276.41 Aligned_cols=200 Identities=22% Similarity=0.263 Sum_probs=160.0
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLT 86 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~lt 86 (212)
.+.+++++||.+.+|+.+|||||||||||||.|+|.|..+| .+|.|.+||-++.. ..+-++|||+||+-.+|+. |
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-T 425 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-T 425 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc-CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-c
Confidence 35799999999999999999999999999999999999999 69999999988743 4567899999999999988 9
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT 163 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~ 163 (212)
|.||+.-+..-......-.......+.+++-.+ |.+.....-...||||||||++|||||-.+|.+++||||-+ ||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 999987432110000000112222345555444 33444444456899999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 164 LTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 164 ~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.....+.+.|..++.++. +|-.....-.| .+|++|++-..|+.+|+-.
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 999999999999998763 69887765544 5899999999999999854
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.8e-38 Score=293.29 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=144.6
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|+++| .+|+|.+++ ++.++|+||++
T Consensus 454 ~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~--------~~~i~~v~Q~~ 524 (659)
T TIGR00954 454 FENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPA--------KGKLFYVPQRP 524 (659)
T ss_pred EEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecC--------CCcEEEECCCC
Confidence 367888884 55799999999999999999999999999999999999988 699998864 34689999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCC---------CCCCChHHHHHHHHHHHHhhCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV---------LNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGqrqRv~lA~al~~~p 150 (212)
.+++. |++||+.++........ .....+.+.++++.+++.+..+++ ..+||||||||++|||||+.+|
T Consensus 525 ~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 525 YMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 88877 99999987532110000 001234567889999997766553 3689999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD 192 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~ 192 (212)
+++||||||+ ||+.+...+.+.+++.... ..+|+++.+..++
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence 9999999999 9999999999998774111 1379988765444
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.7e-38 Score=246.95 Aligned_cols=138 Identities=21% Similarity=0.270 Sum_probs=119.7
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
.++++.|+++.+++++ |++++|++++|+||||||||||+|+|+|+++| ++|+|.++|.. ++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~---------i~~~~q~~~- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGIT---------PVYKPQYID- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEE---------EEEEcccCC-
Confidence 4789999999999985 99999999999999999999999999999998 69999999864 688888542
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
||+|||||++|||||+.+|+++||||||+
T Consensus 72 --------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 72 --------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 99999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCee
Q psy8250 161 VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLL 201 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~ 201 (212)
||+.++..+.+++.+++.+. .+|+++.+... + .+++++-.+
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999987543 27999888653 2 245444333
No 350
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=241.33 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=160.9
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCC--c---cc----cc
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVE--K---NL----MV 69 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~--~---~~----~~ 69 (212)
.+++|.|+.....+||||++.|||++||+|+|||||||||+||++.+.| +.|+|.+.-. +.+ . .+ .+
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-CCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 5799999999999999999999999999999999999999999999999 6999988642 221 1 11 23
Q ss_pred ceEEEEcCCCCCCCCC------CHHHHHH-HHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHH
Q psy8250 70 KVSGFVPQHDLTVDTL------TVHEHMT-LMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~l------tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~ 141 (212)
...|||.|+|.---.+ .+-|-+. .+.+- .-.....+.+||+++.++. ..+..|..+||||+||+.
T Consensus 89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred hccceeecCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 3579999998532222 2333222 12221 2234566789999999964 578889999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
|||.|+..|+++++||||. ||...+.+++++++.+..+. +|||+..++-. ..+|++|+++..|-+|.+-
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccc
Confidence 9999999999999999999 99999999999999998764 38999887654 3589999999999777653
No 351
>KOG0056|consensus
Probab=100.00 E-value=1.5e-39 Score=282.65 Aligned_cols=204 Identities=22% Similarity=0.288 Sum_probs=163.9
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++.|+ ++++|+||||++.+|+.+||+||||+||||++|++..++.- .+|+|.+||+++.+ ..+|+.||.|||
T Consensus 541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVPQ 619 (790)
T ss_pred EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence 57888995 67899999999999999999999999999999999999987 69999999999854 357889999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHH-cCCccccCC----CCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE-LGLLKCKNS----VLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~----~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
+..+|++ |+..|+.++.....+ .......++..+-++ +++.+-.+. +.-.|||||||||+|||+++.+|.+
T Consensus 620 DtvLFNd-TI~yNIryak~~Asn---eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 620 DTVLFND-TILYNIRYAKPSASN---EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cceeecc-eeeeheeecCCCCCh---HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 9998877 999999875332211 111112222222222 344443333 3446999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
++|||.|| ||..+.+.|...|.++...++ -|.+..+...+ .++.+|+|++-|..+|+-
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHH
Confidence 99999999 999999999999999987654 48888776655 478999999999988874
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=280.49 Aligned_cols=195 Identities=20% Similarity=0.169 Sum_probs=157.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|+++.+|+++||++.+|+.+||||+||||||||||+|+|.+.| ++|+|...+. -.++|++|++.
T Consensus 6 ~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-~~G~i~~~~~--------~~v~~l~Q~~~ 76 (530)
T COG0488 6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-DSGEVTRPKG--------LRVGYLSQEPP 76 (530)
T ss_pred EeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-CCCeEeecCC--------ceEEEeCCCCC
Confidence 46899999999999999999999999999999999999999999999999 6999998643 13799999999
Q ss_pred CCCCCCHHHHHHHHHhhhcc--cCCC-------------------------HHHHHHHHHHHHHHcCCccccCCCCCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMD--RNLH-------------------------HVERARTVDALLKELGLLKCKNSVLNVLS 133 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 133 (212)
+.+..||.+.+..+..-... ..+. .-..+.++..++..+|+.+. ++++++||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 99999999988764321000 0000 00123567788899999877 99999999
Q ss_pred hHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH-H--HHHhcCe-eecCC
Q psy8250 134 GGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD-A--LLKELGL-LKCRP 205 (212)
Q Consensus 134 gGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~-~--~l~~g~~-~~~~~ 205 (212)
||||.||+||+||+.+|++|||||||+ ||..+...+.+.|.++...- ++||-++...++ . -+++|++ .+.|.
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 999999999999999999999999999 99999999999998876421 379987776543 2 4557765 33343
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-37 Score=284.67 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=145.0
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCcc---
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-----------LNGLEVEKN--- 66 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~-----------~~g~~~~~~--- 66 (212)
++++++||.+ .+|++++ .+++|+++||+||||||||||+|+|+|++.| ++|+|. ++|.++...
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3588999874 5999999 8999999999999999999999999999999 699997 899887431
Q ss_pred --cccceEEEEcCCCCCCCC---CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250 67 --LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 67 --~~~~~i~~v~Q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~ 141 (212)
.....+++.+|....++. .||.|++... ....++.++++.+++.+..++++.+|||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVA 222 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 111235555554333222 3898887631 12346789999999998899999999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
||+||+.+|++|||||||+ ||+.++..+.++|+++++ . .+|+++.+...
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~ 277 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYL 277 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHh
Confidence 9999999999999999999 999999999999999976 4 27999988664
No 354
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-36 Score=244.95 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=165.3
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH 88 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~ 88 (212)
....+|+||||++++||.+||||+||||||||+|+|+|.++| ++|+|.++|+-.+. +-=...+-|++|.+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t~G~v~v~G~v~~l---------i~lg~Gf~pelTGr 107 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-TSGKVKVTGKVAPL---------IELGAGFDPELTGR 107 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-CCceEEEcceEehh---------hhcccCCCcccchH
Confidence 345799999999999999999999999999999999999999 69999999974321 11123455788999
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH 167 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~ 167 (212)
||+.+...+. ++.+++.+..++++.+.-+|.++.+.++..+|.||+-|+++|.|...+|++||+||-.+ .|+.=++
T Consensus 108 eNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 108 ENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 9999977765 45678889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcCeeecCCchhhhc
Q psy8250 168 EHMTLMARLKMDR-----NLHHVERARTVD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 168 ~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
+=.+.+.++.++. ++||++.+++.+ ..|++|.+...|.++++-+
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999986553 379999998754 4788999999999998753
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.6e-37 Score=305.24 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=150.3
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcC
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q 77 (212)
++++++.|+. +.+|+|+||+|++|+.++|+||||||||||+++|+|.++| .+|.+. .+++.++||+|
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~G~i~---------~~~~~Iayv~Q 686 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-AETSSV---------VIRGSVAYVPQ 686 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-cCCCEE---------EecCcEEEEcC
Confidence 3678888863 5699999999999999999999999999999999999998 587653 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHHH
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~al 146 (212)
+|.+++. |++||+.|+... .+++..++++.+++.+ ....+..+||||||||++||||+
T Consensus 687 ~p~Lf~g-TIreNI~fg~~~----------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 687 VSWIFNA-TVRENILFGSDF----------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred ccccccc-cHHHHhhcCCcc----------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9999876 999999986421 1233445555555432 23344557999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
..+|+++||||||| ||+.+.+++++. +....+.. .||+++.+..++ .+|++|+++..|+.+++.
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999 999999988754 55443322 379998776655 478899999999988874
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.5e-37 Score=304.09 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=151.5
Q ss_pred cccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 2 ETFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 2 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
+++++.|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++| .++|++|+|
T Consensus 640 ~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g----------~i~yv~Q~~ 708 (1522)
T TIGR00957 640 HNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVHMKG----------SVAYVPQQA 708 (1522)
T ss_pred EEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CCcEEEECC----------EEEEEcCCc
Confidence 578888864 4699999999999999999999999999999999999998 699999987 389999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHH---HHHHHc-----CCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKEL-----GLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~-----gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
.+++ .|++||+.++... .. +....+. .+.+.+ |.......+..+||||||||++||||++.+|+
T Consensus 709 ~l~~-~Ti~eNI~~g~~~------~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 709 WIQN-DSLRENILFGKAL------NE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred cccC-CcHHHHhhcCCcc------CH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 8765 6999999985321 11 1111111 112222 22334567788999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHH---Hhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARL---KMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l---~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
++||||||+ ||+.+.+.+++.+.+. .+.. .||+++.+..++ .+|++|+++..|+++++.
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 999999999 9999999999988653 2221 379998876654 478899999999988874
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-37 Score=305.06 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=151.8
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc-eEEEECCEeCCcccccceEEEEc
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~-G~I~~~g~~~~~~~~~~~i~~v~ 76 (212)
++++++.|+. +.+|+|+||+|++|+.++|+||+|||||||+++|+|.++| .+ |+|.+. ..++||+
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~GG~I~l~----------~~Iayv~ 685 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVIR----------GTVAYVP 685 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-CCCceEEEc----------CeEEEEc
Confidence 3678888863 5699999999999999999999999999999999999998 68 899853 4589999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|+|.+++. |++||+.|+... .+++.+++++.+++.+ ....+..+||||||||++||||
T Consensus 686 Q~p~Lfng-TIreNI~fg~~~----------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 686 QVSWIFNA-TVRDNILFGSPF----------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred CccccCCC-CHHHHHhCCCcc----------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99998875 999999986431 1234455555555532 3334456799999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHH-HHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMT-LMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~-~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+..+|+++||||||| ||+++.+++++ .+..+.+.. .||+++.+..++ .+|++|++++.|+.+++.
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999 99999988864 555543322 379998776655 468899999999988874
No 358
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=266.90 Aligned_cols=207 Identities=20% Similarity=0.258 Sum_probs=163.7
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcC
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQ 77 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q 77 (212)
+++++.|+ .+++|+++||++++|+.++++||+|+||||++++|..++.+ .+|.|.+||+++.. ...++.||.|||
T Consensus 266 ~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 266 INVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-NSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-cCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 35778885 56799999999999999999999999999999999999999 69999999999854 457888999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
+..+|++ |++.|+.++.................+..+++.+ |++.....+.-.|||||||||+|||+++.+|++++|
T Consensus 345 DtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~ 423 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL 423 (497)
T ss_pred cceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence 9988877 9999998754321100000111112223333333 333333344456999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||.|| ||..+.+++...|++....++ -|.+..+...+ .+|++|++++.|+.+++-
T Consensus 424 deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 424 DEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred ehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 99999 999999999999999987665 39888887665 489999999999988874
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.8e-36 Score=236.23 Aligned_cols=151 Identities=21% Similarity=0.187 Sum_probs=121.6
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
...+|+|+||++++|++++|+|||||||||||++|. + .+|++.+++... . ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~-~~G~v~~~~~~~-~-~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----Y-ASGKARLISFLP-K-FSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----h-cCCcEEECCccc-c-cccccEEEEhH------------
Confidence 357999999999999999999999999999999985 3 489999987632 1 11234667765
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC--CCeEEecCCCC-CChhh
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV--QSGFVPQHDLT-VDTLT 165 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~--p~llilDEPt~-lD~~~ 165 (212)
.++++.+++.. ..++++.+||+|||||++|||||+.+ |+++||||||+ ||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 24677888875 47889999999999999999999999 99999999999 99999
Q ss_pred HHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeee
Q psy8250 166 VHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLK 202 (212)
Q Consensus 166 ~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~ 202 (212)
.+.+.+.|+++++.. .+|+.+.+...+ .+|++|....
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCC
Confidence 999999999987543 379988764333 2455554433
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=229.24 Aligned_cols=136 Identities=29% Similarity=0.488 Sum_probs=121.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|.++.+++++||++++|++++|+||||||||||+++|+|++.| .+|+|+++|.++... .+++.++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHHhceEEEee
Confidence 46888999888899999999999999999999999999999999999988 699999999887531 23466888888
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
||+||+||++||||++.+|+++||||
T Consensus 81 ------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 81 ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
||+ +|+.++..+.+.+.+++... .+|+.+.+...
T Consensus 107 p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 999 99999999999999987642 27999888664
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.9e-36 Score=297.67 Aligned_cols=187 Identities=23% Similarity=0.277 Sum_probs=145.9
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++| .+|+|.++| .++|++|+|.+++. |++||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 4689999999999999999999999999999999999999 699999988 38999999998875 99999
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcC--CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELG--LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH 167 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~ 167 (212)
+.|+..... ..+........+.+.++.+. .......+..+||||||||++||||++.+|+++|||||++ ||+.+.+
T Consensus 507 I~~g~~~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 507 IIFGLSYDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHhccccch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 998643110 00000000111233333332 2223456678999999999999999999999999999999 9999999
Q ss_pred HHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 168 EHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 168 ~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
++++. +..+.+.. .||+++.+..++ .+|++|+++..|+++++.
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99974 56654332 379998876544 467899999999988874
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=229.61 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=154.2
Q ss_pred cccccccC-----C--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC--C-----cc-
Q psy8250 2 ETFHPLFG-----D--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--E-----KN- 66 (212)
Q Consensus 2 ~~l~~~~~-----~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~--~-----~~- 66 (212)
++++|+|- + -++++++||+++.||++++-||||||||||||++-+.+.| ++|+|++....- + ..
T Consensus 8 ~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~~a~pr~ 86 (235)
T COG4778 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLVTAEPRE 86 (235)
T ss_pred ecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhhccChHH
Confidence 57778773 2 3589999999999999999999999999999999999999 699999965432 1 11
Q ss_pred --c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHH
Q psy8250 67 --L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 67 --~-~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~l 142 (212)
. +++.+|||.|.-...|..+..|.++.+..-. +.+.+....++..+|.++++.+ +++-.|.++||||+|||.|
T Consensus 87 vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 1 3456899999888888888888887765433 4567778888999999999964 6788899999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
||+++.+-+||+|||||+ ||..++.-+.++|.+-+..+ ..|| |+++.
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre 216 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVRE 216 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHH
Confidence 999999999999999999 99999999999999988764 3687 55544
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=9.5e-37 Score=284.27 Aligned_cols=204 Identities=22% Similarity=0.180 Sum_probs=147.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC---CCCCceEEEECCEeCCccc----------
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI---QGDVDGQILLNGLEVEKNL---------- 67 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~---~p~~~G~I~~~g~~~~~~~---------- 67 (212)
+++++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|.. .| .+|+|.+.++++....
T Consensus 180 i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p-~~g~I~~~~Q~~~g~~~t~~~~v~~~ 258 (718)
T PLN03073 180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP-KNCQILHVEQEVVGDDTTALQCVLNT 258 (718)
T ss_pred EceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-CCCEEEEEeccCCCCCCCHHHHHHHh
Confidence 468999999888999999999999999999999999999999999864 45 5889876554321100
Q ss_pred -------ccceEEEEcCCCCCCCCCCHHHHH-----------------HHH-HhhhcccCCCHHHHHHHHHHHHHHcCCc
Q psy8250 68 -------MVKVSGFVPQHDLTVDTLTVHEHM-----------------TLM-ARLKMDRNLHHVERARTVDALLKELGLL 122 (212)
Q Consensus 68 -------~~~~i~~v~Q~~~~~~~ltv~e~l-----------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 122 (212)
++..++|++|.+.+... ++.++. .-. ..+.. ........++.++++.+|+.
T Consensus 259 ~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 259 DIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDAYTAEARAASILAGLSFT 334 (718)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHCCCC
Confidence 12235666665432111 111110 000 00000 00113355678899999996
Q ss_pred -cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHH
Q psy8250 123 -KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALL 195 (212)
Q Consensus 123 -~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l 195 (212)
+..++++.+||||||||++||+||+.+|++|||||||+ ||+.++..+.++|+++... -++||.+.+... + .+|
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l 414 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHL 414 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 45788999999999999999999999999999999999 9999999999999987322 137999988764 3 467
Q ss_pred HhcCee-ecCCchhh
Q psy8250 196 KELGLL-KCRPADEL 209 (212)
Q Consensus 196 ~~g~~~-~~~~~~~~ 209 (212)
++|++. +.|+.++.
T Consensus 415 ~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 415 HGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCEEEEeCCCHHHH
Confidence 799985 67776544
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-35 Score=294.61 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=149.2
Q ss_pred cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
++++.+|+|+||+|++|++++|+|||||||||||++|+|++.| ++|+|.+. +.++|++|+|.+++ .|+
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-SEGRVWAE----------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC----------CeEEEEeCCCccCC-CcH
Confidence 3556799999999999999999999999999999999999998 69999863 35899999998764 699
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL 164 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~ 164 (212)
+||+.++..... ..+........+.+.++.+ |+....++++.+||||||||++|||||+.+|+++||||||+ ||+.
T Consensus 738 ~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 738 RGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 999998432100 0000111112345556666 77777788899999999999999999999999999999999 9999
Q ss_pred hHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 165 TVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 165 ~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+.+.+++.+ ....... .||+++.+...+ .+|++|+++..|+.+++.
T Consensus 817 ~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 817 VGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999887643 3322221 379998876544 468899999999988864
No 365
>KOG0065|consensus
Probab=100.00 E-value=2.8e-34 Score=272.52 Aligned_cols=200 Identities=28% Similarity=0.451 Sum_probs=176.3
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
+.+++|+||+.-++||..+||+|+|||||||||++|+|.... ..+|+|.++|.+.+....+|.+|||.|++...+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 456799999999999999999999999999999999997542 2589999999999877788899999999999999999
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC----CChHHHHHHHHHHHHhhCC-CeEEecCCCC-C
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALAVQTIIVQ-SGFVPQHDLT-V 161 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----LSgGqrqRv~lA~al~~~p-~llilDEPt~-l 161 (212)
+|.|.|.+.++.+...+..+..+.++++++.++|.++.+..++. ||..||+|+.||.-|+.+| .||+|||||| |
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99999999998877777778889999999999999988888776 9999999999999999999 9999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC-----cchHHH-H-HHHH--HHHH-hcCeeecCCchh
Q psy8250 162 DTLTVHEHMTLMARLKMDRN-----LHHVER-A-RTVD--ALLK-ELGLLKCRPADE 208 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~-~-~~~~--~~l~-~g~~~~~~~~~~ 208 (212)
|..+...+++++++++..+. .|+... + +..+ .+|+ -|+.++-|+..+
T Consensus 962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999998753 598752 2 3445 3566 566788888654
No 366
>KOG0054|consensus
Probab=100.00 E-value=2.2e-34 Score=277.63 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=166.8
Q ss_pred CcccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++|++.+|... .+|++|||+|++||.+||+|..|||||||+++|.++..| .+|+|.+||.++... ++|++++++
T Consensus 1141 f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL~dLRsrlsII 1219 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGLHDLRSRLSII 1219 (1381)
T ss_pred EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccHHHHHhcCeee
Confidence 36889999654 799999999999999999999999999999999999998 699999999999763 578899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|.+ |++.|+.=... -.++.+.++|+.+++.+. ......++|-||||.++|||
T Consensus 1220 PQdPvLFsG-TvR~NLDPf~e----------~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1220 PQDPVLFSG-TVRFNLDPFDE----------YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred CCCCceecC-ccccccCcccc----------cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence 999999987 99999862211 123456666776665432 23334679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----cchHHHHHHHHH--HHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN----LHHVERARTVDA--LLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~----~h~~~~~~~~~~--~l~~g~~~~~~~~~~~~~ 211 (212)
||+++++||+|||+|+ .|+.+-..|.+.|++-=++.+ -|.+..+.+.|+ +|++|++++.++|.++.+
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999 999999999999987544433 499998888764 799999999999998864
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.8e-33 Score=228.21 Aligned_cols=187 Identities=18% Similarity=0.126 Sum_probs=126.4
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHH-HHHHcCCCCCCceEEEECC-------E---eCCcc---ccc-c
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLL-ACISQRIQGDVDGQILLNG-------L---EVEKN---LMV-K 70 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl-~~i~g~~~p~~~G~I~~~g-------~---~~~~~---~~~-~ 70 (212)
+.+.+..+|++|||+|++||++||+||||||||||+ ..|.. .|++.+.. . .+... ..+ .
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGL 76 (226)
T ss_pred eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCC
Confidence 445567899999999999999999999999999996 33321 23221100 0 00000 011 1
Q ss_pred eEEEEcCCCC--CCCCCCHHH---HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHH
Q psy8250 71 VSGFVPQHDL--TVDTLTVHE---HMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 71 ~i~~v~Q~~~--~~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~ 144 (212)
..++..|++. ..+..++.. ...+...+. .......+ .++++.+++.+ ..++++.+||||||||++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 77 SPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred CceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHH
Confidence 2344444432 233345442 222211111 11112223 56899999986 589999999999999999999
Q ss_pred HHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecC
Q psy8250 145 QTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCR 204 (212)
Q Consensus 145 al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~ 204 (212)
||+.+| +++||||||+ ||+.++..+.++|++++.+. .+||++.+..++ .+| ++|+++++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999 99999999999999987653 379998765333 367 788888765
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=249.88 Aligned_cols=174 Identities=22% Similarity=0.266 Sum_probs=147.0
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...| .+|+|.+... + .+||..|+.
T Consensus 324 ~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-~~G~v~~g~~-v-------~igyf~Q~~ 394 (530)
T COG0488 324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-LSGTVKVGET-V-------KIGYFDQHR 394 (530)
T ss_pred EeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-CCceEEeCCc-e-------EEEEEEehh
Confidence 4789999966 6899999999999999999999999999999999999998 5999988532 2 489999986
Q ss_pred -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
.+.++.|+.|++.-... . .....+..+|..|++. +...+++..||||||.|+.+|+.++.+|.+|||||
T Consensus 395 ~~l~~~~t~~d~l~~~~~-----~----~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 395 DELDPDKTVLEELSEGFP-----D----GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hhcCccCcHHHHHHhhCc-----c----ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 44577789888764321 1 1156788999999996 45788999999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVD 192 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~ 192 (212)
||+ ||..+...+.+.|..+.-. .++||-+++...+
T Consensus 466 PTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 466 PTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc
Confidence 999 9999999999999988643 2489998886643
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=1.5e-32 Score=220.29 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=121.1
Q ss_pred ccee-eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--------CceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 11 TNYK-ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--------VDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 11 ~~~l-~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--------~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
..-+ +++++++.+| +++|+||||||||||+++|+|++.+. ..|++.+.|.+.......+.++|+||++..
T Consensus 9 fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~ 87 (197)
T cd03278 9 FKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDG 87 (197)
T ss_pred CcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCC
Confidence 3345 7899999999 99999999999999999999987541 134677777766443445679999999876
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecC
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQH 157 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDE 157 (212)
+ |. . . ...++.++++. .+..++++.+||+|||||++||++++. +|+++||||
T Consensus 88 ~----------~~--~---~------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 88 R----------YS--I---I------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred c----------ee--E---E------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 5 10 0 0 02345666666 456788899999999999999999974 569999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
||+ +|+..+..++++|+++++.. .+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence 999 99999999999999986532 3799887643
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.1e-31 Score=221.59 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=143.0
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-----cCC-----CCC----------CceEEEECCEeCCcc----
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-----QRI-----QGD----------VDGQILLNGLEVEKN---- 66 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-----g~~-----~p~----------~~G~I~~~g~~~~~~---- 66 (212)
..-|+||+++|+.|.+++|.|+||||||||++.+. ..+ .|. ..--|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35689999999999999999999999999998662 110 010 012467777766321
Q ss_pred ---------cccc----------------eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC
Q psy8250 67 ---------LMVK----------------VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 121 (212)
Q Consensus 67 ---------~~~~----------------~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 121 (212)
.+|+ .+.|..++...+..+|+.|++.|+.... ...++.++++.+|+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0000 1345555555667899999998865432 12456789999999
Q ss_pred cc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 122 LK-CKNSVLNVLSGGERKRVALAVQTIIV---QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 122 ~~-~~~~~~~~LSgGqrqRv~lA~al~~~---p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
.. ..++++.+|||||+||++||++|+.+ |+++||||||+ ||+.....++++|+++++++ .+|+++.+...
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 87 57999999999999999999999996 79999999999 99999999999999998653 37999887654
Q ss_pred H--HHH------HhcCeeecCCc
Q psy8250 192 D--ALL------KELGLLKCRPA 206 (212)
Q Consensus 192 ~--~~l------~~g~~~~~~~~ 206 (212)
+ ..| ++|++++.|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 4 357 68889998874
No 371
>KOG0054|consensus
Probab=99.97 E-value=1.6e-31 Score=257.91 Aligned_cols=178 Identities=23% Similarity=0.324 Sum_probs=149.1
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
..|+||||+|++|+.+||+||-|||||+||.+|.|.++. .+|++.++|. ++|+||.|.+++. ||+||+
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNI 602 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNGS----------VAYVPQQPWIQNG-TVRENI 602 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcCe----------EEEeccccHhhCC-cHHHhh
Confidence 489999999999999999999999999999999999998 6999999986 7999999988766 999999
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
.|+..+ .+++.++.++.+.|.+. ...+.-+||||||||++||||+-++.++++||.|+|
T Consensus 603 LFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 603 LFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 997543 23455666666666432 244556899999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHH-HHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 161 -VDTLTVHEHMTLMA-RLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 161 -lD~~~~~~~~~~l~-~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|.+..+++++-.- .+-+.. +||.++....++ .+|++|++...|+.+|+.+
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999885543 332221 489998887765 5899999999999998863
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.1e-31 Score=207.00 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=159.3
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
-|-.+|.++..||++-+||||||||||||-.++|+++ .+|+|.++|.++.. .++.++.+|+.|+....+.|.|+.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 3567899999999999999999999999999999875 49999999999853 345667789999877777889998
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh-----CC--CeEEecCCCC-C
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII-----VQ--SGFVPQHDLT-V 161 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~-----~p--~llilDEPt~-l 161 (212)
++.+.- +.++....+.++...+++++.+.+.+++|||||-|||-+|...++ +| +++|+|||.+ |
T Consensus 92 YL~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 92 YLTLHQ--------PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhhcC--------chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 887532 335566778899999999999999999999999999999977765 33 7999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC-----cchHHHHHH-H--HHHHHhcCeeecCCchhhhc
Q psy8250 162 DTLTVHEHMTLMARLKMDRN-----LHHVERART-V--DALLKELGLLKCRPADELNR 211 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~-~--~~~l~~g~~~~~~~~~~~~~ 211 (212)
|...+..+-.+|.++...+. .||++..-. . .-++++|+++.+|..+|+-+
T Consensus 164 DvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 164 DVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 99999999999999987652 599986644 3 34899999999999998754
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.5e-30 Score=212.29 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=116.6
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc----------------CCCCCCce--------EEEECCE
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ----------------RIQGDVDG--------QILLNGL 61 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g----------------~~~p~~~G--------~I~~~g~ 61 (212)
++|++..++++++ |++++|+||||||||||+++|++ ++.+ .+| +|.+++.
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~-~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHE-GSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeC-CCCCCCceEEEEEEEEcC
Confidence 4677778888876 78999999999999999999983 3444 355 5566553
Q ss_pred e----CCc--ccccceEEEEcCCCCCCC-CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCCh
Q psy8250 62 E----VEK--NLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134 (212)
Q Consensus 62 ~----~~~--~~~~~~i~~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 134 (212)
+ +.. ...++.+++++|+..+++ ..|..|...+............ .......+.+.+++.+..++++.+|||
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~ 161 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSG 161 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCH
Confidence 2 111 134566899999887776 4577666555443311110000 000011233345566667788999999
Q ss_pred HHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 135 GERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 135 GqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
|||||++|||||+. +|+++|+||||+ +|+.+++.+++.|++++.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~ 210 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD 210 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999974 589999999999 999999999999999865
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.4e-30 Score=216.08 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=123.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE-eCCc-----ccccceEEEEcCCC---------CCCCCCCHH
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL-EVEK-----NLMVKVSGFVPQHD---------LTVDTLTVH 88 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~-~~~~-----~~~~~~i~~v~Q~~---------~~~~~ltv~ 88 (212)
..+++|+||||||||||+++|++++.+...|++.+.+. ++-. ......+++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 55999999999999999999999987633568888776 3211 11234789999985 234577888
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--------------------cccCCCCCCCChHHHHHHHHHHHHh-
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLL--------------------KCKNSVLNVLSGGERKRVALAVQTI- 147 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--------------------~~~~~~~~~LSgGqrqRv~lA~al~- 147 (212)
+++........... .+....+++.++++.+|+. +..++++.+||+|||||++||+||+
T Consensus 105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 77755322111000 1123346788999999986 4456889999999999999999998
Q ss_pred ---hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 148 ---IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 148 ---~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
.+|+++|+||||+ ||+..+..++++|+++.+.. .+|+.+....
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN 234 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 4789999999999 99999999999999986432 2798555443
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.4e-29 Score=220.46 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=163.6
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCC---CCCCCC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTL 85 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~---~~~~~l 85 (212)
.++|+||++.+||++||.|-=|||+|-|+++|.|..++ .+|+|.++|+++... ..+.-++|||.+. .++..+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 57899999999999999999999999999999997777 699999999998543 3455689999874 688999
Q ss_pred CHHHHHHHHHhhhcc-c-CCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250 86 TVHEHMTLMARLKMD-R-NLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V 161 (212)
Q Consensus 86 tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l 161 (212)
++.+|+.+....+.. . -++.....+.++++.+.+++. +..+.++.+||||.+|||.|||.|..+|++|||||||. .
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 999999887322211 1 245556667889999999984 45678999999999999999999999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH-H--HHHHhcCeeecCCchhh
Q psy8250 162 DTLTVHEHMTLMARLKMDRN-----LHHVERARTV-D--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~ 209 (212)
|.-++.+|+++|++++.++. +-+++++... + .+|++|+++..-+.+++
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999998853 6777776543 3 48999999876655544
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.6e-30 Score=210.80 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=120.1
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCC
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL 85 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~l 85 (212)
+.|++..+++++++ ++++|+||||||||||+++|.-. +|.+... ...+.+++++|+..+++.+
T Consensus 12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~~~-~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRASK-MRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCHHH-hhhhhHHHHhcCCCCCCCC
Confidence 47888889999987 89999999999999999999721 2222111 1124578888888888888
Q ss_pred CHHHHHHHHHhhhc-----ccCCCHHHHHH--HHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEE
Q psy8250 86 TVHEHMTLMARLKM-----DRNLHHVERAR--TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFV 154 (212)
Q Consensus 86 tv~e~l~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~lli 154 (212)
++.+++.+...... ..+........ ...++++.+++.+..++++..||+|||||++||+|++. +|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 88877655432210 00111000000 12456677788888888899999999999999999975 479999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHH
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVER 187 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~ 187 (212)
+||||+ +|+.+...+++.++++++.. .+|+.+.
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~ 192 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNM 192 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHH
Confidence 999999 99999999999999986543 2688543
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=3.7e-28 Score=197.00 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=114.9
Q ss_pred eeeEEEEc-CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC--EeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 15 ESLSGIAE-SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 15 ~~vs~~i~-~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g--~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
.+|+|... +|++++|+||||||||||+++|++.+.....+....+. ..+........++++||++.... ++..+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 55666644 58999999999999999999999644211234333321 11122234456899998763211 111110
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----------CCCeEEecCCCC-
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----------VQSGFVPQHDLT- 160 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----------~p~llilDEPt~- 160 (212)
+.+.......+ .+...++.+..++++.+||+||+||++|||||+. +|+++||||||+
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~ 163 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT 163 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence 12221111111 2444556777889999999999999999999985 568999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH---HHHHhcC
Q psy8250 161 VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD---ALLKELG 199 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~---~~l~~g~ 199 (212)
+|+.+...+.++|.+++++. .+|+.+.+...+ .++++|.
T Consensus 164 lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 164 LDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 99999999999999997643 379998876543 2455553
No 378
>KOG0927|consensus
Probab=99.95 E-value=4.5e-28 Score=213.10 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=138.2
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
+++++.|.+. .++++++|-|+.++.+++|||||+|||||||+++|.+.| ..|.|.-.-.. .+++..|+.
T Consensus 393 ~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~--------~~~~y~Qh~~ 463 (614)
T KOG0927|consen 393 QNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHN--------KLPRYNQHLA 463 (614)
T ss_pred eccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccc--------cchhhhhhhH
Confidence 5788888655 689999999999999999999999999999999999999 69988654322 234545542
Q ss_pred -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
.+.-..++.|++.-. . +.....+.+..++.++||. +....++.+||+|||.||.+|+.++.+|.+|+|||
T Consensus 464 e~ldl~~s~le~~~~~---~-----~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE 535 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPK---F-----PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE 535 (614)
T ss_pred hhcCcchhHHHHHHHh---c-----cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence 233445666655421 1 1122456678899999997 56788899999999999999999999999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD 192 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~ 192 (212)
||+ ||..+...+.+.|.++.... ++||...+.++.
T Consensus 536 PtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVa 573 (614)
T KOG0927|consen 536 PTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVA 573 (614)
T ss_pred CCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHH
Confidence 999 99999999999999885321 479998887653
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=5.6e-28 Score=194.79 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=113.2
Q ss_pred eeeEEEEcCCcEEEEECCCCccHHHHHHHHH----cCCCCCCceEEEECCEeCCcccccceEEEEcCCC-----CCCCCC
Q psy8250 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACIS----QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-----LTVDTL 85 (212)
Q Consensus 15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-----~~~~~l 85 (212)
+..++++.+| +++|+||||||||||+++|. |...| .+|.+..+...+........++++||++ .....+
T Consensus 14 ~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~-~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 14 ERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP-NSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred CceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc-ccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 3445667788 99999999999999999995 87776 4666652222233334456789999987 334455
Q ss_pred CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHH------HHHHHHHhhCCCeEEecCCC
Q psy8250 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR------VALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqR------v~lA~al~~~p~llilDEPt 159 (212)
|+++|+.+.. . ..+.+.+ ++.+.+||+||+|| ++||||++.+|+++|+|||+
T Consensus 92 ~~~~~~~~~~---------~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 92 AILENVIFCH---------Q----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred hHhhceeeec---------h----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 7787775421 1 1122222 67889999999996 78999999999999999999
Q ss_pred C-CChhhHH-HHHHHHHHHHhh-c-----CcchHHHHHH
Q psy8250 160 T-VDTLTVH-EHMTLMARLKMD-R-----NLHHVERART 190 (212)
Q Consensus 160 ~-lD~~~~~-~~~~~l~~l~~~-~-----~~h~~~~~~~ 190 (212)
+ ||+..+. .+.++|.+++++ . .+|+.+.+..
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 9 9999999 999999999764 2 3799876643
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=6.6e-27 Score=231.05 Aligned_cols=198 Identities=21% Similarity=0.209 Sum_probs=140.6
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHH---------HHHcCCCCCCc---e----EEEECCEeCCc--c-------
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLA---------CISQRIQGDVD---G----QILLNGLEVEK--N------- 66 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~---------~i~g~~~p~~~---G----~I~~~g~~~~~--~------- 66 (212)
..|+++||+|++|++++|.|+||||||||++ .+.|...+... + -|.++..++.. .
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 4799999999999999999999999999999 55553222000 1 12333332210 0
Q ss_pred ----ccc---------ce-----EEEEcCC------------------C--------------------CCCCCCCHHHH
Q psy8250 67 ----LMV---------KV-----SGFVPQH------------------D--------------------LTVDTLTVHEH 90 (212)
Q Consensus 67 ----~~~---------~~-----i~~v~Q~------------------~--------------------~~~~~ltv~e~ 90 (212)
.++ +. ..|.|+. + ..+...||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 000 00 1122221 0 14567899999
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHh---hCCCeEEecCCCC-CChhh
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTI---IVQSGFVPQHDLT-VDTLT 165 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~---~~p~llilDEPt~-lD~~~ 165 (212)
+.+...-.........+..+++ ++|+.+|+.+. .++++.+|||||+||++||+||+ .+|+++||||||+ ||+.+
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~ 847 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence 9886542211112233445556 58899999876 79999999999999999999998 5999999999999 99999
Q ss_pred HHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHH------hcCeeecCCchhhh
Q psy8250 166 VHEHMTLMARLKMDR-----NLHHVERARTVD--ALLK------ELGLLKCRPADELN 210 (212)
Q Consensus 166 ~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~------~g~~~~~~~~~~~~ 210 (212)
.+.++++|++++++. .+|+++.+...+ ..|. .|++++.|+++++.
T Consensus 848 ~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 848 IKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999998654 269999874333 3564 68899999998874
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=212.53 Aligned_cols=157 Identities=24% Similarity=0.229 Sum_probs=128.9
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+|++..-+ +...+++++|++++|+.+-|.||||||||||+|+|+|+-+. -+|+|.+- ....+-|+||.|.
T Consensus 396 ~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-g~G~I~~P--------~~~~~lflpQ~PY 466 (604)
T COG4178 396 ENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMP--------ADSALLFLPQRPY 466 (604)
T ss_pred eeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-CCCceecC--------CCCceEEecCCCC
Confidence 56666553 46789999999999999999999999999999999999876 58887653 1123679999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC------CCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS------VLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+... |.+|-+.++.... . -..+.+.++|.++||.++.++ --..||+|||||+++||.|+++|++++
T Consensus 467 ~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~ 538 (604)
T COG4178 467 LPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF 538 (604)
T ss_pred CCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEE
Confidence 8777 9999888754321 1 234567889999999765433 234799999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHH
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMAR 175 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~ 175 (212)
|||.|+ ||+.+...+++++++
T Consensus 539 LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 539 LDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred EecchhccChHHHHHHHHHHHh
Confidence 999999 999999999999977
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=9.6e-27 Score=201.51 Aligned_cols=167 Identities=21% Similarity=0.240 Sum_probs=130.0
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~ 82 (212)
+++|.||+. -|+-=.-+|..||++|++||||-||||+.++|+|.+.| ++|+ ..+ -.++|-||.-..-
T Consensus 347 ~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~----~~~-------~~vSyKPQyI~~~ 413 (591)
T COG1245 347 DLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS----EED-------LKVSYKPQYISPD 413 (591)
T ss_pred hheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-CCCC----Ccc-------ceEeecceeecCC
Confidence 345556543 23444455677899999999999999999999999999 5887 111 1378999975555
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-C
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-V 161 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-l 161 (212)
...||.+.+.-....... ......++++-+.+++..++++.+|||||.|||+||.||.+++++++||||++ |
T Consensus 414 ~~gtV~~~l~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred CCCcHHHHHHHhhhhhcc-------cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 677999887654332111 11233567888999999999999999999999999999999999999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC------cchHHHHH
Q psy8250 162 DTLTVHEHMTLMARLKMDRN------LHHVERAR 189 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~------~h~~~~~~ 189 (212)
|...+-.+...|+++..... -||+..+-
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d 520 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID 520 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhh
Confidence 99999999999999987532 48876653
No 383
>KOG0927|consensus
Probab=99.94 E-value=1.9e-26 Score=202.93 Aligned_cols=203 Identities=20% Similarity=0.195 Sum_probs=134.6
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE--EECCEeCCcccccceEEEEcC-
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI--LLNGLEVEKNLMVKVSGFVPQ- 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I--~~~g~~~~~~~~~~~i~~v~Q- 77 (212)
++++++.|.+..+++|++|++.+|+.|||+|||||||||+|++|.|-..| ..-.+ +.-.+++.... .+.+-++.+
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P-~p~~~d~y~ls~e~~ps~-~~av~~v~~~ 155 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP-IPEHIDFYLLSREIEPSE-KQAVQAVVME 155 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC-CCcccchhhhcccCCCch-HHHHHHHhhh
Confidence 46889999999999999999999999999999999999999999998877 33333 22223332110 000111110
Q ss_pred ---CC----------CCC-CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCCCChHHHHHHHH
Q psy8250 78 ---HD----------LTV-DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 78 ---~~----------~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGqrqRv~l 142 (212)
.. ... +...-.+....+.+.. .........++..+|-.+|. .+..++.+.+||||+|.|++|
T Consensus 156 ~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~---~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 156 TDHERKRLEYLAEDLAQACDDKEKDELDELYERLD---EMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL 232 (614)
T ss_pred hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH---hhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence 00 000 0000000000000100 11122334456677777776 457889999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c--CcchHHHHHHH---HHHHHhcC-eeecCCchh
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R--NLHHVERARTV---DALLKELG-LLKCRPADE 208 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~--~~h~~~~~~~~---~~~l~~g~-~~~~~~~~~ 208 (212)
||||..+|++|+|||||+ ||+.+...+.+.|.++..- . ++|.=+++-.+ ...+++++ +.+.|+-|.
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 999999999999999999 9999999999999988652 2 25775555443 34455666 566666553
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=1.8e-26 Score=219.37 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CeEEecCCCC
Q psy8250 85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---SGFVPQHDLT 160 (212)
Q Consensus 85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~llilDEPt~ 160 (212)
+|+.|++.|..... ......++++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+
T Consensus 792 ltv~E~l~~f~~~~---------~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts 862 (943)
T PRK00349 792 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT 862 (943)
T ss_pred CcHHHHHHHHHhch---------hhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 67888877754422 1123467899999986 578999999999999999999999999 9999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
||+..+..++++|+++++.+ .+|+++.+...+ ..| ++|++++.|+++++.+
T Consensus 863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999997653 269998876443 357 6899999999998864
No 385
>KOG0062|consensus
Probab=99.94 E-value=9.7e-27 Score=203.75 Aligned_cols=179 Identities=19% Similarity=0.219 Sum_probs=125.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC-C
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH-D 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~-~ 79 (212)
+.+++..||++.+|.+-++++..|..|||+|+||+|||||||+|+. |.|.....+ .. .+ --+++-. .
T Consensus 83 ~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~~f~ve--qE-~~--g~~t~~~~~ 150 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVSGFHVE--QE-VR--GDDTEALQS 150 (582)
T ss_pred eeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcCccCch--hh-ee--ccchHHHhh
Confidence 3578899999999999999999999999999999999999999986 233222211 00 00 0121111 1
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+-.+.++.+.+.--..+. ......+...++|..+|+++ ...+++.+||||-|.|++|||||..+|+||+||||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~-----~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELL-----AGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred hhhccHHHHHHHHhhhhhh-----ccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 1222323333322211111 00012233444899999965 56788899999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHH-HHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTV-DALLK 196 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~-~~~l~ 196 (212)
|+ ||..+...+.+.|..+.... ++||-.+.-.+ ..++|
T Consensus 226 TNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH 267 (582)
T KOG0062|consen 226 TNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIH 267 (582)
T ss_pred cccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHH
Confidence 99 99999999999999887332 37998877654 35665
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.8e-26 Score=195.85 Aligned_cols=188 Identities=20% Similarity=0.195 Sum_probs=142.2
Q ss_pred CcccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250 1 METFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~ 76 (212)
++++++.|... .-+..||++|++||++-|+|.||||||||+++++|++.| ++|+|.+||++++.. +.|+.++-||
T Consensus 325 lrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-qsG~I~ldg~pV~~e~ledYR~LfSavF 403 (546)
T COG4615 325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVSAEQLEDYRKLFSAVF 403 (546)
T ss_pred eeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-CCCceeECCccCCCCCHHHHHHHHHHHh
Confidence 35777888654 567899999999999999999999999999999999999 699999999999754 3566667777
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc---cCCC--CCCCChHHHHHHHHHHHHhhCCC
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC---KNSV--LNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~--~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
.+..+|+.+-- ... ....+.++.+|+++.+.+. .+.. .-.||.|||+|+++-.|++-+-+
T Consensus 404 sDyhLF~~ll~------------~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~ 468 (546)
T COG4615 404 SDYHLFDQLLG------------PEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD 468 (546)
T ss_pred hhHhhhHhhhC------------Ccc---CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC
Confidence 76666553111 111 1234567788888877643 3333 34799999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHH-HHHHHhhcC-----cchHHHHHHHHH--HHHhcCeeecC
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTL-MARLKMDRN-----LHHVERARTVDA--LLKELGLLKCR 204 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~-l~~l~~~~~-----~h~~~~~~~~~~--~l~~g~~~~~~ 204 (212)
|+++||=-+ -||.-++.+++. |-.+++++. +||..--.-.++ -+.+|++++.-
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 999999999 999999999865 455676653 687532222243 56699986544
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=193.36 Aligned_cols=208 Identities=19% Similarity=0.213 Sum_probs=170.3
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC-C---ccc-ccceEEEE
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-E---KNL-MVKVSGFV 75 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~-~---~~~-~~~~i~~v 75 (212)
++++..-. +...+++|||++.+||++||.|-.|-|-+.|+.+|+|+..+ .+|+|.++|+++ . ... .+..++||
T Consensus 261 ~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~-~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 261 EDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP-ASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred eeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc-CCceEEECCEeccccCCHHHHHhcCCccC
Confidence 34555442 24689999999999999999999999999999999999887 579999999997 2 222 33468999
Q ss_pred cCCC---CCCCCCCHHHHHHHHHhhh----cccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 76 PQHD---LTVDTLTVHEHMTLMARLK----MDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 76 ~Q~~---~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
|.+. .+.+.+|+.||+.+..... ....+...+..+.+.++++++++. .....++.+||||++||+-+||-|.
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA 419 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence 9985 5788999999998855421 111245567778899999999986 4456778999999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHH---HHHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTV---DALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~---~~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++||+.+||- ||.-+.+.+.+.|.+.++.+. +-|++++... ..+|++|+++...++++..
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~t 491 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEAT 491 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccCC
Confidence 9999999999999 999999999999999988752 6777777553 3589999999888877643
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=2e-25 Score=179.12 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=113.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC----CcccccceEEEEcCCCCCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDTL 85 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~----~~~~~~~~i~~v~Q~~~~~~~l 85 (212)
+...++++++++.+| +.+|+||||||||||+.+|.-.+.. ... ....|... ........+.+.+++..++++
T Consensus 8 nfr~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~-~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 8 NFMCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG-KAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred CccceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC-Ccc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 344567888998888 8899999999999999999743322 111 11112211 111123457888887765541
Q ss_pred CHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-
Q psy8250 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT- 160 (212)
Q Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~- 160 (212)
.. .......+.++++. ....++++.+||+|||||++||+|+ +.+|+++||||||+
T Consensus 84 ----------~~-------~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 ----------PL-------CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred ----------cC-------CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 00 11123456677776 6667889999999999999999999 58999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh--c------CcchHHHHHHHH
Q psy8250 161 VDTLTVHEHMTLMARLKMD--R------NLHHVERARTVD 192 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~--~------~~h~~~~~~~~~ 192 (212)
+|+..+..+.++|.++..+ . .+|+++.+...+
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d 183 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD 183 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc
Confidence 9999999999999997543 1 269998886543
No 389
>KOG0065|consensus
Probab=99.92 E-value=1.1e-25 Score=214.29 Aligned_cols=200 Identities=27% Similarity=0.383 Sum_probs=163.9
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH 88 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~ 88 (212)
..+++|+|+-+++|+++.++||.||||||||++++|..... ..|+|.+||.+.+....++.++|.+|+...++.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 36999999999999999999999999999999999987531 3679999999987654477899999999999999999
Q ss_pred HHHHHHHhhhcccC----CCHHHHHH-HHHHHHHHcCCccccCCCC-----CCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 89 EHMTLMARLKMDRN----LHHVERAR-TVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 89 e~l~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~gl~~~~~~~~-----~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
|.+.|.+++..... ..+.+... ..+.+++.+|++++.+..+ +..|||||+||.+|-+++.+|++++.||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999998765421 22222221 4678999999998877665 57999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhcC------cchH-HHH-HHHH--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDRN------LHHV-ERA-RTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~~------~h~~-~~~-~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||..+.-++.+.|+++..... .++. .++ .-.+ .+|.+|+++++||.|++-
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 99 999999999999999875422 2332 122 1223 478899999999999864
No 390
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=6.6e-26 Score=179.88 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=147.9
Q ss_pred ccccccc----CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----EECCEeCC---ccccc
Q psy8250 2 ETFHPLF----GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----LLNGLEVE---KNLMV 69 (212)
Q Consensus 2 ~~l~~~~----~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----~~~g~~~~---~~~~~ 69 (212)
.+++..+ |...+++++|+++.+||+-|++|+||||||-..|+|+|.... .-.| .|++.++- .+.++
T Consensus 7 rnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd--nW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 7 RNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD--NWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc--ceEEEhhhcccccchhhcCChHHhh
Confidence 3455544 345699999999999999999999999999999999998763 3444 45554442 22223
Q ss_pred ----ceEEEEcCCCCCC--CCCCHHHHHHHH--Hhhhcc---cCCCHHHHHHHHHHHHHHcCCcc---ccCCCCCCCChH
Q psy8250 70 ----KVSGFVPQHDLTV--DTLTVHEHMTLM--ARLKMD---RNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGG 135 (212)
Q Consensus 70 ----~~i~~v~Q~~~~~--~~ltv~e~l~~~--~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~LSgG 135 (212)
+.|+++||+|... |..++...+.-. .+.+.. ..+. =.++++-++|.++|+.+ ....++.+|.-|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~--WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFG--WRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhc--hhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 4578999998643 333332222110 010000 0011 13456788999999964 467789999999
Q ss_pred HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHHHH---HHHhcCeeecCC
Q psy8250 136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTVDA---LLKELGLLKCRP 205 (212)
Q Consensus 136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~~~---~l~~g~~~~~~~ 205 (212)
|-|+|+||.|++.+|++||.||||+ +++.++.+++.+|.++++..+ +||+..+.+.+. +|+=|.-+..++
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~ 242 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAP 242 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccc
Confidence 9999999999999999999999999 999999999999999987643 599988776532 566666666666
Q ss_pred chhhh
Q psy8250 206 ADELN 210 (212)
Q Consensus 206 ~~~~~ 210 (212)
.+++-
T Consensus 243 ~e~l~ 247 (330)
T COG4170 243 SEELV 247 (330)
T ss_pred hhHHh
Confidence 66654
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.1e-24 Score=206.95 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhh---CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC----
Q psy8250 111 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTII---VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN---- 181 (212)
Q Consensus 111 ~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~---~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~---- 181 (212)
+..++|+.+||.. ..++++.+|||||+||+.||++|+. +|+++||||||+ ||+.....++++|+++++++.
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3457889999976 4789999999999999999999997 599999999999 999999999999999976542
Q ss_pred -cchHHHHHHHH--HHH------HhcCeeecCCchhh
Q psy8250 182 -LHHVERARTVD--ALL------KELGLLKCRPADEL 209 (212)
Q Consensus 182 -~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~ 209 (212)
+|+++.+...+ ..| ++|++++.|+++++
T Consensus 887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 69998876543 357 68999999999886
No 392
>KOG0066|consensus
Probab=99.90 E-value=6.2e-24 Score=183.74 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=133.8
Q ss_pred ccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-
Q psy8250 2 ETFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD- 79 (212)
Q Consensus 2 ~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~- 79 (212)
-++++.| |.++++++++|-|.--..++|+||||.||||||+++.|-+.| ..|+..-+ .+-+||+.-|+.
T Consensus 590 H~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-~~GE~RKn--------hrL~iG~FdQh~~ 660 (807)
T KOG0066|consen 590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-NDGELRKN--------HRLRIGWFDQHAN 660 (807)
T ss_pred ccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-Ccchhhcc--------ceeeeechhhhhH
Confidence 4788889 667899999999999999999999999999999999999999 58876543 233589888864
Q ss_pred -CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-CCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 80 -LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-VLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 80 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
.+....|..|++.-.+. +++ ..+...|-.+||...++. .+..|||||+-||++|---+..|++|||||
T Consensus 661 E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 661 EALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred HhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 34555677776653322 232 335567888999765554 578999999999999988899999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHhh--cCcchHHHH
Q psy8250 158 DLT-VDTLTVHEHMTLMARLKMD--RNLHHVERA 188 (212)
Q Consensus 158 Pt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~ 188 (212)
||+ ||..+...+-+.|+++.-- .++||...+
T Consensus 731 PTNNLDIESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred CCCCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence 999 9999999999999998642 236886544
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=3.7e-24 Score=177.26 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=105.6
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-C-Ccc------cccce--EEEEcCCCCC-CCCCCH
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-V-EKN------LMVKV--SGFVPQHDLT-VDTLTV 87 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-~-~~~------~~~~~--i~~v~Q~~~~-~~~ltv 87 (212)
+...++ +++|+||||||||||+.+|++.+.+ ..|++...+.. + ... ..... +.|..|++.. ....++
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~ 95 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGE-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII 95 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCC-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE
Confidence 333444 9999999999999999999998876 46776544321 1 100 00122 3344443221 001111
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc----------------------cCCCCCCCChHHHHHHHHHHH
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC----------------------KNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------------------~~~~~~~LSgGqrqRv~lA~a 145 (212)
.+... .+..+ + .......+.++++.+|+... .++++.+||+|||||++||+|
T Consensus 96 ~~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a 169 (247)
T cd03275 96 TGGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL 169 (247)
T ss_pred ECCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence 11100 00100 1 01123345688888888421 123458999999999999999
Q ss_pred HhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH
Q psy8250 146 TIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD 192 (212)
Q Consensus 146 l~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~ 192 (212)
++.+ |+++||||||+ ||+.....+.++|.+++++. .+|+.+....++
T Consensus 170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCC
Confidence 9975 89999999999 99999999999999997643 379977654333
No 394
>KOG0060|consensus
Probab=99.89 E-value=5.4e-23 Score=182.43 Aligned_cols=176 Identities=20% Similarity=0.126 Sum_probs=130.1
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
+..+.+|+||+|++|+.+.|.||||||||+|+|+++|+-+- .+|.+..-.+.-. +.+-|+||.|.+... |.++
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC-----CceEEecCCCCcccc-chhh
Confidence 45678999999999999999999999999999999998876 5898876433211 347899999987666 9999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-----------CCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-----------VLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+.++..--.. ..+....+++..+|+.++|.+...+ -...||+||+||++.||-+.++|++-||||-
T Consensus 520 QvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 99886431111 1111234456677777766553322 1257999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVDAL 194 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~~~ 194 (212)
|| +|......+.+.+++..... +.|--..-+-++.+
T Consensus 598 TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~ 636 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYV 636 (659)
T ss_pred hhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEE
Confidence 99 99999999998887765432 23544333333433
No 395
>KOG0062|consensus
Probab=99.88 E-value=3.7e-23 Score=181.37 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=141.5
Q ss_pred ccccccCCc--ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 3 TFHPLFGDT--NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 3 ~l~~~~~~~--~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
.+++.|... +.+.+++++++.-+.++++|+||+||||++|++.|-..| ..|.+.+.+ +.+++|-+|.-.
T Consensus 367 ~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-~rgi~~~~~--------r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 367 YVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-TRGIVGRHP--------RLRIKYFAQHHV 437 (582)
T ss_pred eeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-ccceeeecc--------cceecchhHhhh
Confidence 456667543 589999999999999999999999999999999998888 589887753 446899999754
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
-+..+.|.+. .+....+ .+. .++.+..-+..||++ +.....+..||||||-||++|.....+|-+|+|||||
T Consensus 438 d~l~~~v~~v-d~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT 510 (582)
T KOG0062|consen 438 DFLDKNVNAV-DFMEKSF--PGK----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT 510 (582)
T ss_pred hHHHHHhHHH-HHHHHhC--CCC----CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence 4434344332 2222222 122 245567889999996 4566678999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHHH---HHHhcCee
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVDA---LLKELGLL 201 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~~---~l~~g~~~ 201 (212)
+ ||..+...+.+.|+.+.-- .++||.+++...+. ++.+|++.
T Consensus 511 NhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 511 NHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred ccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 9 9999999999999888632 24899998876542 56677763
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=4.8e-23 Score=178.67 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=112.0
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------------cc----c--eEEEEcCC----
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------------MV----K--VSGFVPQH---- 78 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------------~~----~--~i~~v~Q~---- 78 (212)
..+|+++||+||||-||||.+|+|+|.+.|. =|+ .++.+-+..- ++ . ++..-+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 4789999999999999999999999999984 554 2332211100 00 0 11112221
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
|..+-. +|.|-+.- ....-..+++.+.++|.+.+++.+++|||||.||++||.|++++.+++++|||
T Consensus 174 Pk~~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 174 PKVVKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred HHHhcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 222222 34433221 11123578899999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
+| ||...+-....+++++.+.. +.||+...-.
T Consensus 241 sSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 241 SSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred cccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 99 99999999999999998752 2599776533
No 397
>KOG2355|consensus
Probab=99.87 E-value=2.1e-22 Score=159.31 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=137.0
Q ss_pred cccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--------------
Q psy8250 2 ETFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------------- 66 (212)
Q Consensus 2 ~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------------- 66 (212)
.++.+.|. ..+++-|+|++++.|....++|.||||||||||+++|.--. -.|.|.+.|.+.-..
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGg 95 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGDLSYLGG 95 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCceeEecc
Confidence 46778885 45799999999999999999999999999999999997655 468999999764210
Q ss_pred cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 67 ~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.+.+.+++--.-| +-.++++.+-+ |+.. +. ...+-+.+++.++++ ...+.+.+|.|||+||.|++.|
T Consensus 96 eW~~~~~~agevp-lq~D~sae~mi-fgV~-----g~----dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 96 EWSKTVGIAGEVP-LQGDISAEHMI-FGVG-----GD----DPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred ccccccccccccc-ccccccHHHHH-hhcc-----CC----ChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhc
Confidence 1223333222112 22345655433 2221 11 113445677777765 4566789999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC------cchHHHHHHH---HHHHHhcCeeec
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN------LHHVERARTV---DALLKELGLLKC 203 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~------~h~~~~~~~~---~~~l~~g~~~~~ 203 (212)
++.-++|+|||-|. ||..++..+++.+++-.++.+ ||..+-.++. .+.++.|+++..
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 99999999999999 999999999999988776643 6877655553 457778887663
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=9.1e-22 Score=158.06 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=96.9
Q ss_pred eeeeeEEEEcCCc-EEEEECCCCccHHHHHHHHH--------cCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC
Q psy8250 13 YKESLSGIAESGS-LLAIMGPSGAGKTTLLACIS--------QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 13 ~l~~vs~~i~~Ge-~~~iiGpnGaGKSTLl~~i~--------g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~ 83 (212)
-+.++||++.+|+ +++|.||||||||||+|+|+ |...| ....+ .++|+.|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp-~~~~~--------------~~~~~~~~~---- 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP-AAEGS--------------SLPVFENIF---- 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc-ccccc--------------cCcCccEEE----
Confidence 3458999999995 79999999999999999998 43333 11000 122322211
Q ss_pred CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD 162 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD 162 (212)
..++..+..+...+.+|+||+|++.++++ +.+|+++|+|||++ +|
T Consensus 77 ---------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 77 ---------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred ---------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 01112223445567899999999999987 48999999999999 99
Q ss_pred hhhHHHHH-HHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecC
Q psy8250 163 TLTVHEHM-TLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCR 204 (212)
Q Consensus 163 ~~~~~~~~-~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~ 204 (212)
+.....++ .+++++++.. .+|+.+....++ ..+++|++..++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999986 5677776542 378865443333 467788887663
No 399
>KOG0064|consensus
Probab=99.86 E-value=5.1e-22 Score=174.74 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=124.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
+..++..+||+|++|-.+.|+||||||||+|+|+|.|+-+- ..|...+ ....++.|+||.|.+- .-|.+|
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-y~g~L~~--------P~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-YNGLLSI--------PRPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-cCCeeec--------CCCcceEeccCCCccC-cCcccc
Confidence 34578999999999999999999999999999999998754 4554432 1233489999999876 447787
Q ss_pred HHHHHHhhhc--ccCCCHHHHHHHHHHHHHHcCCccccCCCC---------CCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 90 HMTLMARLKM--DRNLHHVERARTVDALLKELGLLKCKNSVL---------NVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 90 ~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+-++...-. .+++. ++....+|..+.+++.+.+-. ..||||||||+++||.+-++|+.-+|||-
T Consensus 564 QIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred eeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 7765432110 11222 234556666666654443322 46999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTVDALLK 196 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~~~~l~ 196 (212)
|| ..+.....+++..+..... ..+|....-.....++.
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~ 680 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLE 680 (728)
T ss_pred hcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHh
Confidence 99 8888888888887765432 23677666555555544
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=159.81 Aligned_cols=159 Identities=23% Similarity=0.257 Sum_probs=122.0
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--------CCCCceEEEECCEeCCcccccceEEEEcCC--CC
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--------QGDVDGQILLNGLEVEKNLMVKVSGFVPQH--DL 80 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--------~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~--~~ 80 (212)
..+++||||++++|++++|+|+|||||||+|++|+|.. .| ++|.|.+--..+ .+.+|.. |.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p-~sg~v~vp~nt~--------~a~iPge~Ep~ 466 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP-DSGKVEVPKNTV--------SALIPGEYEPE 466 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCC-CCCceeccccch--------hhccCcccccc
Confidence 45899999999999999999999999999999999964 35 477766532211 2344443 22
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc--ccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
|..-|+.|.+.-- .+ +...+.++|++.|+.+ +..+++++||.|||.|+.||.++...|.+++.||-
T Consensus 467 -f~~~tilehl~s~------tG-----D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 467 -FGEVTILEHLRSK------TG-----DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred -cCchhHHHHHhhc------cC-----chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 2345666654321 11 1223568899999964 45677899999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR------NLHHVERART 190 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~ 190 (212)
.+ ||+.+...+..-|.+++++. .||+.+....
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 99 99999999999999998763 3788777654
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.83 E-value=1.1e-20 Score=151.68 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=98.5
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
++.+++|++++. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 345777887664 79999999999999999999998542 11345444221 36677677889999999
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE 168 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~ 168 (212)
|+.+.... ...+ ..++.++++.+++ .+|+++|+|||++ +|+.....
T Consensus 79 ~l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 79 DLRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred ccccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHH
Confidence 99774321 1122 2567888888763 7999999999999 99999887
Q ss_pred HH-HHHHHHHhhc-----CcchHHHHHHH
Q psy8250 169 HM-TLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 169 ~~-~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
+. .++..+.+.. .||+.+.+...
T Consensus 126 l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 126 ASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 65 5677776543 37999887553
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=8.9e-20 Score=180.98 Aligned_cols=188 Identities=20% Similarity=0.132 Sum_probs=135.0
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH----------cCCCCCCceEEEECCEeCCc--c-----------ccc
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACIS----------QRIQGDVDGQILLNGLEVEK--N-----------LMV 69 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----------g~~~p~~~G~I~~~g~~~~~--~-----------~~~ 69 (212)
=|+||+.+|+-|.+++|.|.||||||||++-+. |.. . ..--|.+|..++.. + .+|
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-V-FSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-c-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 479999999999999999999999999997544 221 1 23457777766621 0 000
Q ss_pred ---------ceE-----------------------------EEEcCCC-----------------CCC--------CCCC
Q psy8250 70 ---------KVS-----------------------------GFVPQHD-----------------LTV--------DTLT 86 (212)
Q Consensus 70 ---------~~i-----------------------------~~v~Q~~-----------------~~~--------~~lt 86 (212)
+.. .|++.-. .-| -+||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 000 1111100 001 2355
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCeEEecCCCC-C
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV---QSGFVPQHDLT-V 161 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~---p~llilDEPt~-l 161 (212)
|.|.+.|+... ....+.-+.|..+||.. .+.++..+|||||.||+-||..|..+ +.++||||||+ |
T Consensus 1663 v~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1663 IEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 55555543210 12334567889999975 47889999999999999999999875 78999999999 9
Q ss_pred ChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHH--------hcCeeecCCchhhhc
Q psy8250 162 DTLTVHEHMTLMARLKMDRN-----LHHVERARTVDALLK--------ELGLLKCRPADELNR 211 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~~l~--------~g~~~~~~~~~~~~~ 211 (212)
++...+.++++|+++.+.++ .||++.++.++.+++ -|+|++.|+|+++.+
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999988754 499999888665433 567999999999864
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=9.8e-20 Score=147.70 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=55.2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHH----hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c------CcchHHHHHH
Q psy8250 124 CKNSVLNVLSGGERKRVALAVQT----IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R------NLHHVERART 190 (212)
Q Consensus 124 ~~~~~~~~LSgGqrqRv~lA~al----~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~------~~h~~~~~~~ 190 (212)
..+..+.+||+|||||+.+|++| +.+|+++|+||||+ +|+..+..++++|.+++.+ . .+||+.....
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 45667899999999998877554 57999999999999 9999999999999998765 2 2688765543
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=8.2e-19 Score=138.55 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHH
Q psy8250 132 LSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERAR 189 (212)
Q Consensus 132 LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~ 189 (212)
||+||+||++|||+++ .+|+++|+|||++ +|+.....+.+.|.++.... .+|+.+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999997 5899999999999 99999999999999987652 379877654
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.7e-19 Score=165.39 Aligned_cols=119 Identities=19% Similarity=0.263 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CeEEecCCC
Q psy8250 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---SGFVPQHDL 159 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~llilDEPt 159 (212)
+|||.|...|+... ....+..+.|..+||.. .+.++..+|||||.|||-||.-|..+. -++||||||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 35666665554321 12334456788889965 478889999999999999999999988 999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHH--------hcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDALLK--------ELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~~l~--------~g~~~~~~~~~~~~~ 211 (212)
+ |.....+++++.|.+|...++ .|+++.++.++.+++ -|.+++.|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9 999999999999999998765 499999888776654 466999999999864
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=9.5e-19 Score=136.09 Aligned_cols=127 Identities=23% Similarity=0.224 Sum_probs=87.3
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVHEHMT 92 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~e~l~ 92 (212)
....++.+.++.++.|+|||||||||+++.+....-. .+|.+... ... ..+ +++.....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~-~~~~~~~~-~~~-------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG-AQSATRRR-SGV-------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh-cchhhhcc-Ccc-------cCCCcceeeEEEE----------
Confidence 3445555666679999999999999999998765543 34433321 110 011 111111000
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHH
Q psy8250 93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVH 167 (212)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~ 167 (212)
.. ...+||+||+||+.||++|+. +|+++|+|||++ +|+....
T Consensus 72 ----i~-----------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 72 ----IF-----------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ----eh-----------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00 001299999999999999997 789999999999 9999999
Q ss_pred HHHHHHHHHHhhc-----CcchHHHHHHHH
Q psy8250 168 EHMTLMARLKMDR-----NLHHVERARTVD 192 (212)
Q Consensus 168 ~~~~~l~~l~~~~-----~~h~~~~~~~~~ 192 (212)
.+.+.+.++..+. .||+.+.+...+
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELAD 148 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhh
Confidence 9999998876542 379988776543
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.1e-18 Score=145.08 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH
Q psy8250 131 VLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD 192 (212)
Q Consensus 131 ~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~ 192 (212)
.|||||+||+++|++++. +|+++|+|||++ +|+.....+.+.+.++.... .+|+...+..++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d 240 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMAD 240 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcC
Confidence 499999999999997765 999999999999 99999999999999986532 379987554333
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.7e-19 Score=145.95 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=97.3
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVH 88 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~ 88 (212)
...+.+|+++++.++++++|.||||+|||||+++|+-. . ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H------------------HHHHhCCCcCcccEEEe-----
Confidence 45689999999999999999999999999999999721 0 011122 4444321111
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-CC
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-VD 162 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-lD 162 (212)
.+++++..+++.+.. ...+|.|+++++.+++++ +.+|+++||||| |+ +|
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 112344455554332 578999999999999999 899999999999 99 99
Q ss_pred hhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250 163 TLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRP 205 (212)
Q Consensus 163 ~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~ 205 (212)
+.+.... +++.+.++ . .||+ .++... + ..+++|++..++.
T Consensus 127 ~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 8888533 33444332 1 3786 444332 2 3567787765553
No 409
>KOG0066|consensus
Probab=99.77 E-value=3.5e-19 Score=154.48 Aligned_cols=184 Identities=22% Similarity=0.197 Sum_probs=129.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCccc-------c---
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKNL-------M--- 68 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~~-------~--- 68 (212)
|++++.+-.++.++.|-|+.|-.|..||++||||-||||||+.|+..- .|+ .=.+.+..+++.... +
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl~aD 345 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVLKAD 345 (807)
T ss_pred eeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHHHhh
Confidence 467777777888999999999999999999999999999999998642 232 334555555542100 0
Q ss_pred cceEEE-------EcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHH
Q psy8250 69 VKVSGF-------VPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKR 139 (212)
Q Consensus 69 ~~~i~~-------v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqR 139 (212)
.++..+ ..|- --...|+.|-+.-.+ .++. +.......++..+|.-+|++. ..+++...+|||-|.|
T Consensus 346 ~kRl~lLeee~~L~~q~--e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 346 KKRLALLEEEAKLMSQI--EEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 001111 1110 012335555443322 1221 112234556788999999975 5678888999999999
Q ss_pred HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHH
Q psy8250 140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERART 190 (212)
Q Consensus 140 v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~ 190 (212)
|+|||||...|-+|+|||||+ ||..+.-.+-+.|+-|+... ++||-.+...
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 999999999999999999999 99999988889999998753 4688665544
No 410
>KOG0063|consensus
Probab=99.76 E-value=8.9e-18 Score=145.15 Aligned_cols=179 Identities=19% Similarity=0.225 Sum_probs=127.9
Q ss_pred ccCC-cceeeeeEEEEcCC-----cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 7 LFGD-TNYKESLSGIAESG-----SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 7 ~~~~-~~~l~~vs~~i~~G-----e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
+|.+ +..+.+..+.|+.| |++..+|+||.||||++++++|.+.|+..|+|-.. .++|-||...
T Consensus 344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l-----------nVSykpqkis 412 (592)
T KOG0063|consen 344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL-----------NVSYKPQKIS 412 (592)
T ss_pred ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc-----------ceeccccccC
Confidence 4533 45677888888776 57899999999999999999999998534444322 2677777644
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
--..-||++.+.--.+- .-.....+.+.++-+.+++..++.+..|||||.||+++|.+|=..+++++.|||.+
T Consensus 413 pK~~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 413 PKREGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred ccccchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 33445777655432111 11224456788888888999999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh--c----CcchHHHHHHHHHHHHhcCeeecCCch
Q psy8250 161 -VDTLTVHEHMTLMARLKMD--R----NLHHVERARTVDALLKELGLLKCRPAD 207 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~--~----~~h~~~~~~~~~~~l~~g~~~~~~~~~ 207 (212)
||...+...-..++++--. . +.||+-.+ .++.+-.++++|.|.
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfIma----TYladrvivf~G~ps 535 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA----TYLADRVIVFEGQPS 535 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH----HhhcceeEEEecCcc
Confidence 9999888777777775322 1 13553222 244455566776554
No 411
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.76 E-value=1.9e-18 Score=139.29 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=95.9
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EEcCCCCCCCCCCHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVH 88 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v~Q~~~~~~~ltv~ 88 (212)
+..+.+|++|++.+|++++|+||||+||||++++|+++..- + ++| ++ |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l---a----------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM---A----------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH---H----------------HcCCCc---chhhcCccCh
Confidence 45689999999999999999999999999999999876311 1 112 22 3333444555
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH 167 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~ 167 (212)
+++.. .++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++ +|+....
T Consensus 73 d~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 73 NRLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hheeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 55432 2233333456678899999975 55567889999999999999 9987765
Q ss_pred HH-HHHHHHHHhhc-----CcchHHHHHH
Q psy8250 168 EH-MTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 168 ~~-~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
.+ ..++..+.+.+ .||+.+.+..
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 54 45667776543 3899887754
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=7.1e-19 Score=141.40 Aligned_cols=147 Identities=16% Similarity=0.041 Sum_probs=91.2
Q ss_pred eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM 94 (212)
Q Consensus 15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~ 94 (212)
-..++++.+|++++|+|||||||||||++|++.......|..... ....+++..|. +..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~--------~~~~i~~~dqi---~~~~--------- 79 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA--------ESASIPLVDRI---FTRI--------- 79 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc--------cccccCCcCEE---EEEe---------
Confidence 345666779999999999999999999999954321123321110 01112222211 1110
Q ss_pred HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHH-H
Q psy8250 95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMT-L 172 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~-~ 172 (212)
+..+......+.+|.+++| +..+.+++.+|+++|+|||++ +|+.....+.. +
T Consensus 80 -------------------------~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 80 -------------------------GAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -------------------------cCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111122334556666665 666678889999999999999 99998887754 5
Q ss_pred HHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCCch
Q psy8250 173 MARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRPAD 207 (212)
Q Consensus 173 l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~ 207 (212)
++.+.+.. .||+.+.+...+ ..++++++..+++.+
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence 66665432 379987776544 355577776666543
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.8e-16 Score=132.97 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=49.3
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cCcchHHHH
Q psy8250 129 LNVLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RNLHHVERA 188 (212)
Q Consensus 129 ~~~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~~h~~~~~ 188 (212)
...+|+||+|+++||++|+ .+|+++|+||||+ ||+..+..+++.+.++..- -.+|+.+.+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~ 251 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADF 251 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhc
Confidence 4568999999999999985 6999999999999 9999999999999876421 125665544
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=5.6e-17 Score=154.83 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHhhhcccC---CC---HHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--Ce
Q psy8250 82 VDTLTVHEHMTLMARLKMDRN---LH---HVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SG 152 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~l 152 (212)
+..++|.|.+.|...+..... .. -.+...++ ++|+.+||.+. +++++.+|||||+|||.||+||+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346788888888544321100 00 01223344 37888999876 79999999999999999999999997 99
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALL------KELGLLKCRPADELN 210 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~ 210 (212)
+||||||+ ||+.....++++|+++++.+. +|+++++..++ .+| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 99999999 999999999999999987543 69999876444 367 899999999998873
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.8e-16 Score=151.19 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHhhhcccCCCH------HHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--CeE
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHH------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SGF 153 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~ll 153 (212)
..||+.|.+.|...+........ .+...+ -+++..+||... +++.+.+|||||+|||.||+||+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 35778877777654321100000 011112 234777888765 79999999999999999999999986 899
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALL------KELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.+...++++|+++++++. +|+++.+..++ ..| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999 999999999999999987642 69998876444 367 799999999988873
No 416
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.65 E-value=2.2e-16 Score=113.93 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=62.1
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++.. ....+.+++++|+ ++ ..|+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence 56899999999999999999999999999999975 6789999998843 2345567788887 33 4499
Q ss_pred HHHHHHHH
Q psy8250 88 HEHMTLMA 95 (212)
Q Consensus 88 ~e~l~~~~ 95 (212)
+||+.+.-
T Consensus 72 ~~Ni~~~~ 79 (107)
T cd00820 72 RLNIFLIT 79 (107)
T ss_pred Hhhceeee
Confidence 99998743
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=1.1e-15 Score=124.28 Aligned_cols=148 Identities=16% Similarity=0.050 Sum_probs=89.3
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
..+.++++++..+ ++++|+|||||||||+||+|++.......| ..+.. ....++++.| +++.+++.++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g------~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG------SFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC------Ceecc--ccceecceee---EeccCCchhh
Confidence 3588999999887 999999999999999999998754321122 22211 1234566644 4566666666
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-CChh
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-VDTL 164 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-lD~~ 164 (212)
+..+ .|.=...+..+++++ +.+|+++||||| |+ +|..
T Consensus 86 ls~g-------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~ 128 (216)
T cd03284 86 LAGG-------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL 128 (216)
T ss_pred hccC-------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence 5432 122222233333333 569999999999 88 8876
Q ss_pred hHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhh
Q psy8250 165 TVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 165 ~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~ 209 (212)
.. ...++..+.+. . .||+.+.....+ ..++++++..++..+++
T Consensus 129 ~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 129 SI--AWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 53 22334444333 2 379865443322 23457766666555544
No 418
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=1.2e-15 Score=123.41 Aligned_cols=49 Identities=12% Similarity=-0.081 Sum_probs=44.0
Q ss_pred CCCChH--HHHHHHHHHHHhhCCCeEEecCCC-----C-CChhhHHHHHHHHHHHHh
Q psy8250 130 NVLSGG--ERKRVALAVQTIIVQSGFVPQHDL-----T-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 130 ~~LSgG--qrqRv~lA~al~~~p~llilDEPt-----~-lD~~~~~~~~~~l~~l~~ 178 (212)
+..||+ |++++.||++++.+|+++++|||| + ||+..++.+.+++++++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 344444 999999999999999999999999 9 999999999999999864
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.56 E-value=1.8e-15 Score=120.09 Aligned_cols=69 Identities=10% Similarity=-0.037 Sum_probs=47.6
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH-HHHHHHHhh-c-----CcchHHHHH
Q psy8250 120 GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM-TLMARLKMD-R-----NLHHVERAR 189 (212)
Q Consensus 120 gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~-~~l~~l~~~-~-----~~h~~~~~~ 189 (212)
+..+..++..+++|+|++|...+++ .+.+|+++|+|||++ +|+.....+. .+++.+.++ . .||+.+...
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 3334456667889998887433332 234999999999999 9999887764 566666653 2 279986443
No 420
>KOG0063|consensus
Probab=99.56 E-value=6.1e-15 Score=127.74 Aligned_cols=161 Identities=16% Similarity=0.193 Sum_probs=106.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE--------cCCC---CCCCCCCHHHH
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV--------PQHD---LTVDTLTVHEH 90 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v--------~Q~~---~~~~~ltv~e~ 90 (212)
.+|++.|++|.||-||||-+++++|.++|. -|. ++.-+.+ ...++|. |+.+ .+ ....=.++
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpn-lg~--~~~pp~w----~~il~~frgselq~yftk~le~~l-k~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGR--YDNPPDW----QEILTYFRGSELQNYFTKILEDNL-KAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCC-CCC--CCCCcch----HHHhhhhhhHHHhhhhhhhccccc-cCcCChHH
Confidence 679999999999999999999999999984 443 1111111 1111110 0000 00 00000111
Q ss_pred HHHHHh-hhc--ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhH
Q psy8250 91 MTLMAR-LKM--DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTV 166 (212)
Q Consensus 91 l~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~ 166 (212)
+.-..+ ... ..-+..........++++.+.|....++-+..||||+-||.+||++.+++.++.++|||.+ ||...+
T Consensus 170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQR 249 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQR 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHh
Confidence 111111 000 0001122233356778888889888999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 167 HEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 167 ~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
..-...|+.+.... +.||+.....
T Consensus 250 LkaA~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 250 LKAAITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhHHHHHHHhhCCCCeEEEEEeechHHHh
Confidence 99888888876432 2588876644
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.56 E-value=6.4e-15 Score=138.89 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=85.4
Q ss_pred eEEEEcCC-cEEEEECCCCccHHHHHHHHHcC-CCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250 17 LSGIAESG-SLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM 94 (212)
Q Consensus 17 vs~~i~~G-e~~~iiGpnGaGKSTLl~~i~g~-~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~ 94 (212)
+|+++..+ ++++|.||||+|||||||+|+|. +.+ ..|. +||..... .+.+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~------------------~Vpa~~~~--~~~~~d~i~-- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGI------------------PIPANEHS--EIPYFEEIF-- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCC------------------CccCCccc--cccchhhee--
Confidence 78888877 89999999999999999999987 333 3441 22222110 001111110
Q ss_pred HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH-HHH
Q psy8250 95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH-MTL 172 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~-~~~ 172 (212)
.. +. .........+++|+||+++..|++++ .+|+++|+|||++ +|+.....+ ..+
T Consensus 371 ~~------i~----------------~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ai 427 (771)
T TIGR01069 371 AD------IG----------------DEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISI 427 (771)
T ss_pred ee------cC----------------hHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHH
Confidence 00 00 00112234677999999999998876 7899999999999 999999988 567
Q ss_pred HHHHHhhc-----CcchHHHH
Q psy8250 173 MARLKMDR-----NLHHVERA 188 (212)
Q Consensus 173 l~~l~~~~-----~~h~~~~~ 188 (212)
+..++..+ .||+.+..
T Consensus 428 Le~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 428 LEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHhcCCEEEEECChHHHH
Confidence 77776543 37887754
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=6.4e-14 Score=113.66 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=81.5
Q ss_pred EEEEcCC--cEEEEECCCCccHHHHHHHHHc--CCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC-CCCCHHHHHH
Q psy8250 18 SGIAESG--SLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV-DTLTVHEHMT 92 (212)
Q Consensus 18 s~~i~~G--e~~~iiGpnGaGKSTLl~~i~g--~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~-~~ltv~e~l~ 92 (212)
++.+.++ .+++|.||||+|||||||.|+. .+ + ..|...... .-.++|..|....+ ...++.+++
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a-~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~~~- 89 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-A-HIGSFVPAD--------SATIGLVDKIFTRMSSRESVSSGQ- 89 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-H-hCCCeeEcC--------CcEEeeeeeeeeeeCCccChhhcc-
Confidence 3444554 7899999999999999999983 33 3 356554421 11256666642111 111111110
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHH-H
Q psy8250 93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEH-M 170 (212)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~-~ 170 (212)
+.+ .-+.||+++|++++.+|+++|+|||++ +|+.....+ .
T Consensus 90 -------------------------------------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ 131 (213)
T cd03281 90 -------------------------------------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLI 131 (213)
T ss_pred -------------------------------------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHH
Confidence 011 346689999999999999999999999 999765444 5
Q ss_pred HHHHHHHhh---c-----CcchHHHHHHH
Q psy8250 171 TLMARLKMD---R-----NLHHVERARTV 191 (212)
Q Consensus 171 ~~l~~l~~~---~-----~~h~~~~~~~~ 191 (212)
.+++++.+. . .||+.+.+...
T Consensus 132 ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 132 ATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 688887643 1 27998887553
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.52 E-value=3.6e-13 Score=117.43 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=49.1
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHH
Q psy8250 130 NVLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERA 188 (212)
Q Consensus 130 ~~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~ 188 (212)
..+|.||+|+++||++|+ .+|+++|+|||++ ||+..+..+++.+.++..+- .+|+.+.+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~ 342 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDL 342 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhh
Confidence 579999999999999996 6899999999999 99999999999997653221 35776554
No 424
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.50 E-value=8e-14 Score=116.71 Aligned_cols=64 Identities=28% Similarity=0.252 Sum_probs=49.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----ccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
..++|+||||||||||+++|+|++.| .+|+|.++|+++.. ..+...++++||.. +...++|.+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC-CCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 57899999999999999999999998 69999999999842 23344567777754 3344455443
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.48 E-value=9.5e-15 Score=118.58 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----
Q psy8250 110 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR---- 180 (212)
Q Consensus 110 ~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~---- 180 (212)
..+.+.+..+++... .||||||.+++||.-|+ ..++++|||||.+ ||...+..+.++|.++..+.
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii 194 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFII 194 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445566666666433 89999999999996653 3579999999999 99999999999999987443
Q ss_pred CcchHHHHHH
Q psy8250 181 NLHHVERART 190 (212)
Q Consensus 181 ~~h~~~~~~~ 190 (212)
+||+......
T Consensus 195 ~Th~~~~~~~ 204 (220)
T PF02463_consen 195 TTHNPEMFED 204 (220)
T ss_dssp E-S-HHHHTT
T ss_pred cccccccccc
Confidence 3788665543
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=3.2e-12 Score=104.30 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=40.8
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc-CCCCCCceEEEE
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ-RIQGDVDGQILL 58 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g-~~~p~~~G~I~~ 58 (212)
..+.+|+++++.+|++++|.||||+||||++++|++ .+.+ ..|...+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la-~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA-QIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH-hCCCEEE
Confidence 468899999999999999999999999999999999 4455 5777554
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.31 E-value=8.4e-12 Score=118.15 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=84.1
Q ss_pred eeEEEEc-CCcEEEEECCCCccHHHHHHHHHcCC-CCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250 16 SLSGIAE-SGSLLAIMGPSGAGKTTLLACISQRI-QGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 93 (212)
Q Consensus 16 ~vs~~i~-~Ge~~~iiGpnGaGKSTLl~~i~g~~-~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~ 93 (212)
..++.+. .+.++.|.|||++||||+||.++... -+ ..| .|||-... ..+++.+++.
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~ma-q~G------------------~~vpa~~~--~~i~~~~~i~- 375 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMA-KSG------------------LPIPANEP--SEIPVFKEIF- 375 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHH-HhC------------------CCcccCCC--ccccccceEE-
Confidence 3455554 45689999999999999999996431 11 122 12322210 0111111111
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH-H
Q psy8250 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM-T 171 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~-~ 171 (212)
..+|-.+......+++|+||+|++.|++++ .+|+++|+|||++ +|+.....+. .
T Consensus 376 -----------------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a 431 (782)
T PRK00409 376 -----------------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS 431 (782)
T ss_pred -----------------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence 011222234456788999999999999988 8999999999999 9999988885 4
Q ss_pred HHHHHHhhc-----CcchHHHHHH
Q psy8250 172 LMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 172 ~l~~l~~~~-----~~h~~~~~~~ 190 (212)
++..+...+ .||+.+.+..
T Consensus 432 ile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 432 ILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred HHHHHHHCCCEEEEECChHHHHHH
Confidence 666676543 3799777654
No 428
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.31 E-value=1.9e-12 Score=114.77 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=46.1
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCc
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEK 65 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~ 65 (212)
.+|++||+++++||+++|+|||||||||||+ +|+..|+ +| +|.++|.++..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~-sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS-EGYEFFLDATHSFS 71 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC-CCCEEEECCEECCC
Confidence 5899999999999999999999999999999 6777784 66 89999999854
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.23 E-value=1.2e-10 Score=95.67 Aligned_cols=130 Identities=21% Similarity=0.227 Sum_probs=76.6
Q ss_pred EEcCCcEEEEECCCCccHHHH-HHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250 20 IAESGSLLAIMGPSGAGKTTL-LACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTL-l~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~ 98 (212)
-+++|+++.|.|||||||||| ++++++...+ ... +.|+..+ .+..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~-----------------~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYS-----------------VSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCc-----------------EEEEeCC------CCHHHHHHHHHHhC
Confidence 379999999999999999999 6888886543 122 2333221 13444443332221
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-C----ChhhHHHH
Q psy8250 99 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-V----DTLTVHEH 169 (212)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-l----D~~~~~~~ 169 (212)
. . ++++... +.-...+-. ..+|+++.++-.+++.+-. +|+++++|||++ + |+...+.+
T Consensus 76 ~--~---------~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l 142 (230)
T PRK08533 76 Y--D---------INKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL 142 (230)
T ss_pred C--c---------hHHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH
Confidence 1 0 0111111 110111111 2366666555555444433 699999999999 7 77777889
Q ss_pred HHHHHHHHhhcC----cchHH
Q psy8250 170 MTLMARLKMDRN----LHHVE 186 (212)
Q Consensus 170 ~~~l~~l~~~~~----~h~~~ 186 (212)
.++++.+++.+. +|+..
T Consensus 143 ~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 143 MAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHhCCCEEEEEeccc
Confidence 999988876532 56644
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.22 E-value=1.5e-11 Score=99.44 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCC---CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250 129 LNVLSGGERKRVALAVQTIIVQ---SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE 186 (212)
Q Consensus 129 ~~~LSgGqrqRv~lA~al~~~p---~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~ 186 (212)
...+|.|++|.+.|+.++...+ .++++|||.+ |+|..++.+.++|..+.... .||...
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999998888877 8999999999 99999999999998876521 378754
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.21 E-value=1e-10 Score=96.91 Aligned_cols=167 Identities=18% Similarity=0.111 Sum_probs=85.4
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEEC--CEe-CCcccccceE--EEEcCCCCCCCCCCHHHHH
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLN--GLE-VEKNLMVKVS--GFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~--g~~-~~~~~~~~~i--~~v~Q~~~~~~~ltv~e~l 91 (212)
+.+..|+.++|+||+|+|||||++.|++.... ..+ .+++. +.+ .+...+.+.+ .++...... +....+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC----CHHHHH
Confidence 46889999999999999999999999987754 222 32221 211 1111111111 122221111 111111
Q ss_pred HH-------HHhhhcccCCC---HHHHHHHHHHHHHHcCCccccCCCCCCCChHH--------HHHHHHHHHHhhCCCeE
Q psy8250 92 TL-------MARLKMDRNLH---HVERARTVDALLKELGLLKCKNSVLNVLSGGE--------RKRVALAVQTIIVQSGF 153 (212)
Q Consensus 92 ~~-------~~~~~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq--------rqRv~lA~al~~~p~ll 153 (212)
.. ...+.. .+.. --+...+.......+.. .....+|||+ +||+++||++..+++|.
T Consensus 86 ~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~-----~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 86 QVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVP-----PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccc-----cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 11 111100 0000 00011122222222222 2234579999 99999999998999999
Q ss_pred EecCCCC-CChhhHHH-HHHHHHHHHhhc-----CcchHHHHHHH--HHHHHhcCe
Q psy8250 154 VPQHDLT-VDTLTVHE-HMTLMARLKMDR-----NLHHVERARTV--DALLKELGL 200 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~-~~~~l~~l~~~~-----~~h~~~~~~~~--~~~l~~g~~ 200 (212)
+| ||+ +|..+... +. +.+++... .+|.+.....+ ..+++.|.+
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 99 999 88544432 33 34444211 14555444333 235555554
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=5.1e-11 Score=96.94 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=79.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
+..+-+|++|+.++|++++|.||||+||||+++++++...-...|. .+.... ..++++ ..++..+...+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCccc--cEeccc---cEEEEecCccc
Confidence 4568899999999999999999999999999999987532111121 111100 011111 11111111122
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE 168 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~ 168 (212)
++.... +.++ -|-+++.-....+.+|+++|+|||.. .++.....
T Consensus 85 ~~~~~~----------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 85 DIMKGE----------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred ccccCc----------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 221100 0011 12233333333346799999999999 89888877
Q ss_pred HHHH-HHHHHhh-c-----CcchHHHHHHH
Q psy8250 169 HMTL-MARLKMD-R-----NLHHVERARTV 191 (212)
Q Consensus 169 ~~~~-l~~l~~~-~-----~~h~~~~~~~~ 191 (212)
+... +..+.+. . .||+.+.+...
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 7666 6666653 2 37998887653
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.20 E-value=1.2e-10 Score=103.08 Aligned_cols=128 Identities=20% Similarity=0.124 Sum_probs=89.2
Q ss_pred cccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250 4 FHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82 (212)
Q Consensus 4 l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~ 82 (212)
++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.|.+.|+. .
T Consensus 136 i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGer----------------g--- 194 (432)
T PRK06793 136 ITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGER----------------G--- 194 (432)
T ss_pred hhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCC----------------c---
Confidence 344453 45677774 99999999999999999999999999999887 57766554432 1
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHh-------hCCCeEE
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTI-------IVQSGFV 154 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~-------~~p~lli 154 (212)
.++.|.+..... .-++.. ..=....+-|.|+|+|++.+.+.+ .++-+++
T Consensus 195 --~ev~e~~~~~l~---------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLli 251 (432)
T PRK06793 195 --REVKDFIRKELG---------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLM 251 (432)
T ss_pred --ccHHHHHHHHhh---------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 255554432111 001110 011345678999999999998887 7899999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHH
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~ 177 (212)
+|+||. .|.. +++..++.+.-
T Consensus 252 lDslTr~a~A~--reisl~~~e~p 273 (432)
T PRK06793 252 MDSVTRFADAR--RSVDIAVKELP 273 (432)
T ss_pred ecchHHHHHHH--HHHHHHhcCCC
Confidence 999999 8774 55555554443
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.18 E-value=3.7e-11 Score=106.83 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=103.2
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe---CCc--------ccccceEEEEcCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEK--------NLMVKVSGFVPQH 78 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~---~~~--------~~~~~~i~~v~Q~ 78 (212)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|+. +.. ..+++.+.++.+-
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 45689999 99999999999999999999999999999988 69999985543 321 1245678888753
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.. +..+-+.-. .....+.+++..-|..-.. ...+++ |. |+|+ +-=-+.+.||
T Consensus 223 ~~-----~~~~r~~~~------------~~a~~iAEyfr~~g~~Vll--~~Dslt-----r~--A~A~--rEisl~~ge~ 274 (438)
T PRK07721 223 DQ-----PALMRIKGA------------YTATAIAEYFRDQGLNVML--MMDSVT-----RV--AMAQ--REIGLAVGEP 274 (438)
T ss_pred CC-----CHHHHHHHH------------HHHHHHHHHHHHCCCcEEE--EEeChH-----HH--HHHH--HHHHHhcCCC
Confidence 21 222111110 0111122333222432110 011222 11 1111 0000123575
Q ss_pred CC---CChhhHHHHHHHHHHHHh--hcC----------cchHHH-HHHHHHHHHhcCeeecCCchh
Q psy8250 159 LT---VDTLTVHEHMTLMARLKM--DRN----------LHHVER-ARTVDALLKELGLLKCRPADE 208 (212)
Q Consensus 159 t~---lD~~~~~~~~~~l~~l~~--~~~----------~h~~~~-~~~~~~~l~~g~~~~~~~~~~ 208 (212)
.+ +|+.....+.+++.++.. .+. +||+++ +++....+.+|+++.+++.++
T Consensus 275 P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 275 PTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHH
Confidence 44 899999999999999874 221 588864 334456788999999987654
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.17 E-value=5.5e-11 Score=106.55 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=83.6
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMT 92 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~ 92 (212)
++++.++.++.|.+++++||||+||||++..|++.+.. ..|.. .++++.+++ ...++.|++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~--------------kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-RHGAS--------------KVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-hcCCC--------------eEEEEeCCc---cchhHHHHHH
Confidence 45667777889999999999999999999999997755 34431 367888876 3468999999
Q ss_pred HHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH-HHHHHHHHhhCC-----CeEEecCCCC
Q psy8250 93 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK-RVALAVQTIIVQ-----SGFVPQHDLT 160 (212)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq-Rv~lA~al~~~p-----~llilDEPt~ 160 (212)
++...... +........+......++.+.....+.+.+.+++- .+.-..+++.++ .+|+||.++.
T Consensus 307 ~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 307 IYGKILGV---PVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 88775432 11111222333445556665555566664434332 233444555554 6889998887
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.16 E-value=6.3e-11 Score=94.06 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=59.7
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC--CCCCCCCHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD--LTVDTLTVHEHM 91 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~--~~~~~ltv~e~l 91 (212)
.+=+.+.+++|+.++|+||||||||||+++|+|+++| ..|.|.+.+..-........+++++|.. ..++..+..+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3445567899999999999999999999999999987 6999999764321112234456665543 345667888887
Q ss_pred HHHHhh
Q psy8250 92 TLMARL 97 (212)
Q Consensus 92 ~~~~~~ 97 (212)
....+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 765543
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.16 E-value=3.7e-10 Score=96.49 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccc--cceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM--VKVSGFVPQHDLTVDTLTVHEHMTLM 94 (212)
Q Consensus 17 vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~--~~~i~~v~Q~~~~~~~ltv~e~l~~~ 94 (212)
+++.+..|+.++|+||+|||||||+++|++.+++ ..|.+.+.. ...... ...+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied--~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIED--TREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcC--ccccCCCCCCEEEEEecCCC--------------
Confidence 5577889999999999999999999999999877 577777742 111111 111222211100
Q ss_pred HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHH
Q psy8250 95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMA 174 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~ 174 (212)
......|- .-.++.+|-++|+++++|||.+ .+.+++++
T Consensus 200 --------------------------------~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~------~e~~~~l~ 237 (308)
T TIGR02788 200 --------------------------------QGLAKVTP----KDLLQSCLRMRPDRIILGELRG------DEAFDFIR 237 (308)
T ss_pred --------------------------------CCcCccCH----HHHHHHHhcCCCCeEEEeccCC------HHHHHHHH
Confidence 00001111 1235556888999999999997 34556666
Q ss_pred HHHhhc-----CcchHHHHHHH--HHHHHhcCeeecCCchhh
Q psy8250 175 RLKMDR-----NLHHVERARTV--DALLKELGLLKCRPADEL 209 (212)
Q Consensus 175 ~l~~~~-----~~h~~~~~~~~--~~~l~~g~~~~~~~~~~~ 209 (212)
.+...+ ++|..+..... ...+..|+....|.+++.
T Consensus 238 a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 238 AVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHH
Confidence 665433 14776533333 334557777777766554
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.08 E-value=4.8e-11 Score=93.62 Aligned_cols=77 Identities=8% Similarity=-0.047 Sum_probs=49.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--HHHHHhc
Q psy8250 126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--DALLKEL 198 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~~~l~~g 198 (212)
.++...+|++++-+..+++..+.+|+++++|||..++..+ ..+.+.+.++.+.. ++|+....... ...+++|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 3445679999999999999999999999999954433222 33344444443322 26874333323 3466688
Q ss_pred Ceeec
Q psy8250 199 GLLKC 203 (212)
Q Consensus 199 ~~~~~ 203 (212)
++++.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 76443
No 439
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=2.5e-10 Score=101.09 Aligned_cols=87 Identities=25% Similarity=0.283 Sum_probs=68.0
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCc--------c-cccceEEEEcC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEK--------N-LMVKVSGFVPQ 77 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~--------~-~~~~~i~~v~Q 77 (212)
+..+++++ |++.+|++++|+||||+|||||+++|+|...++ . |.|-.++.++.. . ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d-v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD-VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCC-eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 45799999 999999999999999999999999999998773 4 334444444421 1 12346899999
Q ss_pred CCCCCCCCCHHHHHHHHHhhh
Q psy8250 78 HDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~ 98 (212)
+...+..+++.+++.+.+.+.
T Consensus 220 d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHh
Confidence 998899999999987766543
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=5.2e-10 Score=109.53 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=60.8
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhh----------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchH
Q psy8250 122 LKCKNSVLNVLSGGERKRVALAVQTII----------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHV 185 (212)
Q Consensus 122 ~~~~~~~~~~LSgGqrqRv~lA~al~~----------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~ 185 (212)
....++++.+|||||++|++||+||+. +|++||+||||+ ||+.+...++++|.+++..+ ++|+.
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 345667889999999999999999996 799999999999 99999999999999997643 26998
Q ss_pred HHHHHH
Q psy8250 186 ERARTV 191 (212)
Q Consensus 186 ~~~~~~ 191 (212)
+....+
T Consensus 1021 ~~~~~~ 1026 (1042)
T TIGR00618 1021 EFRERI 1026 (1042)
T ss_pred HHHHhh
Confidence 877654
No 441
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.03 E-value=6.3e-10 Score=98.79 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC---EeCCc---ccc---cceEEEE-----
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEK---NLM---VKVSGFV----- 75 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g---~~~~~---~~~---~~~i~~v----- 75 (212)
+..+++++ |.+.+|+.++|+|+||+|||||+++|++..++...|.|.+.| .++.. ..+ ....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 34688887 999999999999999999999999999987432357777744 44421 111 1224444
Q ss_pred cCCCC--CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCCCCC
Q psy8250 76 PQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----KCKNSVLNVLS 133 (212)
Q Consensus 76 ~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LS 133 (212)
+|+|. +.+.+ +...+..+.+.+...-+...+...++.++++.+++. .....+++.||
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 88763 22333 444444444433211112356778899999999993 45677787777
No 442
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.03 E-value=1.9e-10 Score=105.46 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCCCChHHHHHHHHHHHHh----------hCCCeEEecCCC-C-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 127 SVLNVLSGGERKRVALAVQTI----------IVQSGFVPQHDL-T-VDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 127 ~~~~~LSgGqrqRv~lA~al~----------~~p~llilDEPt-~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
..+..|||||+||++||+||+ .+|+++|||||| + +|+.....+.++|.++ ... .+|+.+....
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQK 542 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchhh
Confidence 356789999999999999988 489999999998 6 9999999999999998 322 3798665443
Q ss_pred HH
Q psy8250 191 VD 192 (212)
Q Consensus 191 ~~ 192 (212)
++
T Consensus 543 ~d 544 (562)
T PHA02562 543 FD 544 (562)
T ss_pred hh
Confidence 33
No 443
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=8.8e-10 Score=110.04 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-----c-----CcchHHHHH
Q psy8250 127 SVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-----R-----NLHHVERAR 189 (212)
Q Consensus 127 ~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-----~-----~~h~~~~~~ 189 (212)
...+.||+|||| |++||+|++.+|++|+|||||+ ||+.+...+.+.|..+... + .||+++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345789999999 9999999999999999999999 9999999999988887321 1 379999887
Q ss_pred HHH
Q psy8250 190 TVD 192 (212)
Q Consensus 190 ~~~ 192 (212)
.++
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 643
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.00 E-value=7e-09 Score=81.62 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=43.7
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc
Q psy8250 125 KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR 180 (212)
Q Consensus 125 ~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~ 180 (212)
..+.....|.||-=--.+.+.+ ...-++|||||-+ |.|.-+-+++..|+.+.+.+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG 178 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSG 178 (233)
T ss_pred CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcC
Confidence 3445667899997665555554 5678999999999 99999999999999998764
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.99 E-value=2.6e-10 Score=91.18 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=66.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCH
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 105 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 105 (212)
++||.||||||||||.++|++++ + .|.+.+-+.+- ++..++..+........+ ..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~--~~~~~v~~~D~-----------------~~~~~~~~~~~~~~~~~~---~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-G--NPKVVIISQDS-----------------YYKDLSHEELEERKNNNY---DHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C--CCCeEEEEecc-----------------cccccccccHHHhccCCC---CCCC
Confidence 58999999999999999999987 2 33333322221 011111111111000000 0000
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh
Q psy8250 106 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL 164 (212)
Q Consensus 106 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~ 164 (212)
........+.+..+......+.+..+.|.|++++..+ .+..|+++|+|.|+. .++.
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 1112233455666655555677788899999876655 577899999999999 7653
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.5e-09 Score=100.88 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=80.7
Q ss_pred HHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhC--CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchH
Q psy8250 115 LLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIV--QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHV 185 (212)
Q Consensus 115 ~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~--p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~ 185 (212)
+|..+||..+ +++...+|||||.||+-||..+=.. -=+++||||+. |.+....++++.|+++++.++ .||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 4555677653 7889999999999999999998665 35889999999 999999999999999998765 4998
Q ss_pred HHHHHHHHH--------HHhcCeeecCCchhhhc
Q psy8250 186 ERARTVDAL--------LKELGLLKCRPADELNR 211 (212)
Q Consensus 186 ~~~~~~~~~--------l~~g~~~~~~~~~~~~~ 211 (212)
+.++.++.+ .+-|.+++.|+++++.+
T Consensus 544 dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 877776543 55788999999999854
No 447
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.97 E-value=1.4e-09 Score=96.62 Aligned_cols=76 Identities=24% Similarity=0.240 Sum_probs=60.5
Q ss_pred ccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC---EeCCc-------ccccc
Q psy8250 2 ETFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEK-------NLMVK 70 (212)
Q Consensus 2 ~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g---~~~~~-------~~~~~ 70 (212)
+++++.| .+..+++.++ .+.+|++++|+||||+|||||+++|+++..| +.|.|.+.| .++.. ..+++
T Consensus 143 ~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p-d~gvv~liGergrev~e~~~~~l~~~r~r 220 (450)
T PRK06002 143 ARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF-DTVVIALVGERGREVREFLEDTLADNLKK 220 (450)
T ss_pred ecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CeeeeeecccCCccHHHHhHHHHHHhhCC
Confidence 4567777 4567888886 9999999999999999999999999999888 589888854 55431 11346
Q ss_pred eEEEEcCCC
Q psy8250 71 VSGFVPQHD 79 (212)
Q Consensus 71 ~i~~v~Q~~ 79 (212)
.+++++|..
T Consensus 221 tI~vV~qsd 229 (450)
T PRK06002 221 AVAVVATSD 229 (450)
T ss_pred eEEEEEcCC
Confidence 789999964
No 448
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.97 E-value=1.1e-09 Score=100.82 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 130 NVLSGGERKRVALAVQTIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 130 ~~LSgGqrqRv~lA~al~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
..|||||+||++||++++.. |+++|||||++ +|+.....+.+.|++++... +||++..+..
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ 508 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAH 508 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 36899999999999999986 69999999999 99999999999999997533 3799887754
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.96 E-value=6.5e-09 Score=81.79 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=49.8
Q ss_pred HcCCccccCCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CC---hhhHHHHHHHHHHHHhhc
Q psy8250 118 ELGLLKCKNSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VD---TLTVHEHMTLMARLKMDR 180 (212)
Q Consensus 118 ~~gl~~~~~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD---~~~~~~~~~~l~~l~~~~ 180 (212)
..|.....+..+..+|+|++| ....+.+...+|+++++|||++ +| ......+.+++..++...
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 445555677888899999998 5555555677999999999999 88 777788888888887654
No 450
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.95 E-value=1.9e-09 Score=105.41 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=57.6
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh--------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 125 KNSVLNVLSGGERKRVALAVQTII--------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 125 ~~~~~~~LSgGqrqRv~lA~al~~--------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
..+++.+|||||+++++||+||+. +|++||+||||+ ||+.+...+++.|..++..+ ++|..+....
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 357899999999999999999996 899999999999 99999999999999998654 2686555433
Q ss_pred H
Q psy8250 191 V 191 (212)
Q Consensus 191 ~ 191 (212)
+
T Consensus 1023 i 1023 (1047)
T PRK10246 1023 I 1023 (1047)
T ss_pred c
Confidence 3
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=1.1e-08 Score=75.13 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCc-eEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR 101 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~-G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~ 101 (212)
.+..+.|+||+|+||||+++.|+..+... . +.++++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~-------------------~~~~~---------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV-------------------LDQLL---------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC-------------------HHHHH----------
Confidence 36789999999999999999999887652 2 34444433221100 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHH
Q psy8250 102 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHM 170 (212)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~ 170 (212)
...........++++..+..+++|--.+|.++++||+.. .+........
T Consensus 51 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 51 --------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred --------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 011122234567888888888888877899999999999 5655554443
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.94 E-value=6.8e-09 Score=83.23 Aligned_cols=37 Identities=32% Similarity=0.471 Sum_probs=28.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
++.|.||+||||||+++.+.+.+.+...|.|.....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 6889999999999999999887764235666654444
No 453
>PRK10869 recombination and repair protein; Provisional
Probab=98.94 E-value=1.7e-09 Score=99.16 Aligned_cols=61 Identities=26% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250 131 VLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV 191 (212)
Q Consensus 131 ~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~ 191 (212)
.+||||+||++||++++. +|+++|||||++ +|..+...+.+.|++++... +||++..++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~a 499 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCG 499 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 479999999999999997 589999999999 99999999999999997543 37998876543
No 454
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=2e-09 Score=105.87 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=58.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHHHH
Q psy8250 125 KNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVDAL 194 (212)
Q Consensus 125 ~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~~~ 194 (212)
.+.++..|||||++|++||++++ ..|+++|||||++ +|+.+...+.++|..++... +||+...+..++.+
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhH
Confidence 45678899999999999999985 5679999999999 99999999999999986543 37998876554443
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.88 E-value=3.7e-09 Score=80.52 Aligned_cols=33 Identities=6% Similarity=-0.185 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250 131 VLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT 163 (212)
Q Consensus 131 ~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~ 163 (212)
..+.++.++...+++...+|+++++|||++ ++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHH
Confidence 445666668888999999999999999997 544
No 456
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.87 E-value=1.7e-09 Score=85.29 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=47.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-cc-ceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MV-KVSGFVPQHDLTVDTLTVHEHMTLM 94 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-~~-~~i~~v~Q~~~~~~~ltv~e~l~~~ 94 (212)
+|++++|+||||||||||+++|++++.+ ++++|.++.... .+ ...++.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998765 478888764321 22 2346666665555555666666543
No 457
>PRK01156 chromosome segregation protein; Provisional
Probab=98.86 E-value=5.9e-09 Score=100.69 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHH------HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHH-Hhhc-------CcchHHHHHH
Q psy8250 127 SVLNVLSGGERKRVAL------AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARL-KMDR-------NLHHVERART 190 (212)
Q Consensus 127 ~~~~~LSgGqrqRv~l------A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l-~~~~-------~~h~~~~~~~ 190 (212)
..+..|||||++|++| |++++.+|++++|||||+ ||+.....+.++|... +... .|||.+.+..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 4678999999999975 589999999999999999 9999999999998754 3211 2799887643
No 458
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=2e-09 Score=103.57 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250 126 NSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA 188 (212)
Q Consensus 126 ~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~ 188 (212)
+.++..|||||+| |++||++++.+|+++|+||||+ +|+..+..+.++|..+.... +||+.+..
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~ 857 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK 857 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 4567899999999 5556667889999999999999 99999999999999886542 37997654
No 459
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.82 E-value=6.8e-08 Score=92.47 Aligned_cols=43 Identities=7% Similarity=0.011 Sum_probs=37.0
Q ss_pred hhCCCeEEecCCCC-C-ChhhHHHHHHHHHHHHhhc-----CcchHHHHH
Q psy8250 147 IIVQSGFVPQHDLT-V-DTLTVHEHMTLMARLKMDR-----NLHHVERAR 189 (212)
Q Consensus 147 ~~~p~llilDEPt~-l-D~~~~~~~~~~l~~l~~~~-----~~h~~~~~~ 189 (212)
..+|+++++|||+. | |+.....+.+.++++++.+ .||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 46999999999999 9 7899999999999997754 379988774
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=98.80 E-value=1.3e-08 Score=88.72 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMT 92 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~ 92 (212)
++.+.-.+.+|++++|+|+||+|||||++.|+|...+ ..|+|.+++.........+.+++++|...+++. +...++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~-~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ-KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc-ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 3444455778999999999999999999999999988 699999987543222334567889988766653 4444443
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.76 E-value=2.9e-09 Score=85.80 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=26.8
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
++|++++|+||||||||||++.|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999998764
No 462
>PRK08149 ATP synthase SpaL; Validated
Probab=98.76 E-value=1.8e-08 Score=89.28 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc-------cccceEEEEcCC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN-------LMVKVSGFVPQH 78 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~-------~~~~~i~~v~Q~ 78 (212)
.+..+++++ +.+.+|++++|+||||+|||||+++|++...+ +. |.|..+|.++... ...+++++|+..
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~-dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEA-DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCC-CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 345799999 99999999999999999999999999998877 45 8899999887431 123567788765
Q ss_pred CC
Q psy8250 79 DL 80 (212)
Q Consensus 79 ~~ 80 (212)
..
T Consensus 215 sd 216 (428)
T PRK08149 215 SD 216 (428)
T ss_pred CC
Confidence 43
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.72 E-value=1.4e-08 Score=65.98 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=31.4
Q ss_pred eeeeeEEEEcC-CcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 13 YKESLSGIAES-GSLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 13 ~l~~vs~~i~~-Ge~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
.+++.++++.+ |.++.|.||||||||||+.+|.=.+.+
T Consensus 11 ~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 11 SFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred ccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34556777875 579999999999999999999877665
No 464
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.72 E-value=9.3e-09 Score=92.95 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=55.2
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
.++++.||...+++++++.+..|+.++|+||||+|||||++.|.|+++| .+|++.+....+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp-~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPD-LSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCC-CCCcEEEecchh
Confidence 4778888888899999999999999999999999999999999999988 699888876554
No 465
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.70 E-value=3.2e-08 Score=75.30 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHh-----hCCCeEEecCCCC-CChhhHHHHHHHHHHH
Q psy8250 110 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTI-----IVQSGFVPQHDLT-VDTLTVHEHMTLMARL 176 (212)
Q Consensus 110 ~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~-----~~p~llilDEPt~-lD~~~~~~~~~~l~~l 176 (212)
..+..++..++.. -....++..+|.+++++........ ..|+++ |+| +|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666643 1234456778999988877666533 335555 889 9999999999988764
No 466
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.70 E-value=9.1e-08 Score=88.91 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCce--------EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHH
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--------QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM 94 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--------~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~ 94 (212)
..+.++|+||||+|||||.++|.+...+ ..| -+.+++..+.. ......+..++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC
Confidence 3567999999999999999999987754 233 24444433210 00000011111
Q ss_pred HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHH
Q psy8250 95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMA 174 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~ 174 (212)
.. .......+.+.++.+|+.......+.++||| +|++||...||+..+..+++.|.
T Consensus 235 -------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDEi~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 235 -------SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDEIGELDPLLQNKLLKVLE 290 (615)
T ss_pred -------Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEeccccCCHHHHHHHHHHHh
Confidence 00 1111223455688889988888889999999 99999943399999999999987
Q ss_pred H
Q psy8250 175 R 175 (212)
Q Consensus 175 ~ 175 (212)
+
T Consensus 291 ~ 291 (615)
T TIGR02903 291 D 291 (615)
T ss_pred h
Confidence 5
No 467
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.69 E-value=1.5e-08 Score=99.81 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH
Q psy8250 126 NSVLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD 192 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~ 192 (212)
.+++..||||||++++||++|+. .|+++|||||++ ||+.....+.++|.+++... .||+......++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d 1144 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYAD 1144 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcc
Confidence 34567899999999999999986 679999999999 99999999999999986543 379876553333
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.69 E-value=2.5e-08 Score=81.66 Aligned_cols=74 Identities=24% Similarity=0.510 Sum_probs=49.7
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceE----EEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQ----ILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 97 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~----I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~ 97 (212)
.+..++||.||||||||||.+.|++.+.+ .+|. |.+++...... .....+++++.. .+..+++.+...+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh-ccCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999999988 5887 55554332221 223356766532 34556777766665444
Q ss_pred h
Q psy8250 98 K 98 (212)
Q Consensus 98 ~ 98 (212)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 3
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.68 E-value=7.9e-08 Score=79.15 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=70.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC-EeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-LEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN 102 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g-~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~ 102 (212)
|.+..|+||.|+|||||.-.++=-. ..|.=++.+ .... ....+-|+.=+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v---a~G~~~~g~~~~~~---~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM---ALGKNLFGGGLKVT---EPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH---hcCccccCCccccC---CCceEEEEECCC-----------------------
Confidence 6788999999999999998886321 233222221 1110 112233442211
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHH----------------HHhhCCCeEEecCCCC------
Q psy8250 103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV----------------QTIIVQSGFVPQHDLT------ 160 (212)
Q Consensus 103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~----------------al~~~p~llilDEPt~------ 160 (212)
+..+...++..+...+++.+..++... .+|+.|++.+++ +...+|+++|+| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 112233445555555554433333222 245556555443 345799999999 764
Q ss_pred -CChhhHHHHHHHHHHHHhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~ 179 (212)
+|+.....+++.|.+++.+
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~ 147 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQ 147 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 5888888899999888765
No 470
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.67 E-value=1.9e-08 Score=85.15 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=49.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEECCEeCC--cccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVE--KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~~g~~~~--~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~ 98 (212)
-.++||.||||||||||+++|.+++. | .+|.|.+-+.+-. .....+..+++ |...++..+++...+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 46999999999999999999999886 5 4777766444321 11122234543 6666677778877777655543
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.67 E-value=2.7e-08 Score=78.83 Aligned_cols=51 Identities=35% Similarity=0.513 Sum_probs=38.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc---ccceEEEEcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL---MVKVSGFVPQH 78 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~---~~~~i~~v~Q~ 78 (212)
|++++|+||||||||||+++|++...+ .+.+.+..++... ..+.+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT----QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC----eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999997654 4777777665422 23456777775
No 472
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.66 E-value=2.9e-08 Score=88.10 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=49.0
Q ss_pred ccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 4 FHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 4 l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
++..| .+..+++++ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.+.+.|..
T Consensus 135 v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~-d~~vi~~iGeR 192 (433)
T PRK07594 135 ITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA-DSNVLVLIGER 192 (433)
T ss_pred HhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC-CEEEEEEECCC
Confidence 44555 467899999 99999999999999999999999999999988 58888776653
No 473
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.64 E-value=5e-08 Score=83.73 Aligned_cols=50 Identities=30% Similarity=0.321 Sum_probs=44.5
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~ 61 (212)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++...+ +.|.+..-|.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA-DVNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEec
Confidence 46789999 99999999999999999999999999999988 5787766553
No 474
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.62 E-value=3.9e-07 Score=74.70 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=36.7
Q ss_pred CCCChHHHHHHHHHHHHhh--CCCeEEecCCCC-CC---hhhHHHHHHHHHHHHhh
Q psy8250 130 NVLSGGERKRVALAVQTII--VQSGFVPQHDLT-VD---TLTVHEHMTLMARLKMD 179 (212)
Q Consensus 130 ~~LSgGqrqRv~lA~al~~--~p~llilDEPt~-lD---~~~~~~~~~~l~~l~~~ 179 (212)
...|.++.+.+..+..++. +|+++++|||++ +| ......+++.++.+++.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~ 154 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL 154 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 3457889999999999998 899999999996 44 34444554555555544
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.60 E-value=3.9e-08 Score=84.39 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=53.4
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---------cccceEEEEcCCCCCCCCCCHHHHHH
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---------LMVKVSGFVPQHDLTVDTLTVHEHMT 92 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---------~~~~~i~~v~Q~~~~~~~ltv~e~l~ 92 (212)
.+|++++++|||||||||++..|++.+.+ ..++|.+-+.+.... ..+..+.+++|.....+..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999887 578998877665321 12344788888655555556677765
Q ss_pred HH
Q psy8250 93 LM 94 (212)
Q Consensus 93 ~~ 94 (212)
..
T Consensus 191 ~~ 192 (318)
T PRK10416 191 AA 192 (318)
T ss_pred HH
Confidence 43
No 476
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.60 E-value=1.1e-07 Score=84.63 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=45.5
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...+ +.|.+...|.+
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~~ 182 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASA-DVNVIALIGER 182 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEccC
Confidence 56799999 99999999999999999999999999999988 58888775543
No 477
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.58 E-value=1e-07 Score=83.03 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=63.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCC--CCceEEEECCEeCCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 97 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p--~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~ 97 (212)
.+|..++|+||+||||||++++|++.+.+ +..+.|.....++.- .......+++.|...--...+..+.+.-..+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 47899999999999999999999998742 123356555544431 12223346777753211112344444332222
Q ss_pred hcccC-CCHHHHHHHHHHHHHHc-------------CCccccCCCCCCCChHHHHHH
Q psy8250 98 KMDRN-LHHVERARTVDALLKEL-------------GLLKCKNSVLNVLSGGERKRV 140 (212)
Q Consensus 98 ~~~~~-~~~~~~~~~~~~~l~~~-------------gl~~~~~~~~~~LSgGqrqRv 140 (212)
....- .......+.+..+++.. +......+....+|+||+--+
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 11100 01111223344455552 222334555677999988544
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.58 E-value=8.4e-08 Score=85.39 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
.+..+++++ +.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|+.
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~-d~~vi~~iGer 200 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQC-DVNVIALIGER 200 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CeEEEEEEccC
Confidence 356799999 99999999999999999999999999999988 58999888854
No 479
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.56 E-value=7.6e-08 Score=87.86 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=51.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 93 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~ 93 (212)
-++||.||||||||||.+.|++.+ | ..|.|.+||.... .+.+.+.+++|..++..++.+++.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p-~vgvIsmDdy~~~----~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVISMDNYNDS----SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-C-CcEEEEEcceecc----hhhhCccCCChhhcchhHHHHHHHH
Confidence 489999999999999999999987 5 4899999997421 2235678898888887788888754
No 480
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.56 E-value=1.7e-06 Score=83.24 Aligned_cols=49 Identities=4% Similarity=-0.056 Sum_probs=41.9
Q ss_pred HHHHHhhCCCeEEecCCCC-C-ChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-V-DTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-l-D~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
|++++..+|+++++|||+. + |+..+..+.+.++.+++.+ .||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 6778889999999999999 8 7899999999999987654 3799987764
No 481
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.55 E-value=1.5e-07 Score=79.71 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=52.6
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc--ccc-ceEEEEcCCCCC---C-CCCCHH
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN--LMV-KVSGFVPQHDLT---V-DTLTVH 88 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~--~~~-~~i~~v~Q~~~~---~-~~ltv~ 88 (212)
..+. +++++++|+||+|||||+|.|.|...+ ..|+|.. .|...+.. ... ...+++.+.|.+ . ..++..
T Consensus 157 ~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~-~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 234 (287)
T cd01854 157 EYLK-GKTSVLVGQSGVGKSTLINALLPDLDL-ATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPE 234 (287)
T ss_pred hhhc-cceEEEECCCCCCHHHHHHHHhchhhc-cccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHH
Confidence 3344 589999999999999999999999887 5898875 34333321 111 225789998876 2 457777
Q ss_pred HHHHHHH
Q psy8250 89 EHMTLMA 95 (212)
Q Consensus 89 e~l~~~~ 95 (212)
+...++.
T Consensus 235 ~~~~~f~ 241 (287)
T cd01854 235 ELAHYFP 241 (287)
T ss_pred HHHHHhH
Confidence 7665543
No 482
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=1e-07 Score=84.74 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=51.4
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCc---eEEEECCEeCCcc------cccceEEEEcCCC
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKN------LMVKVSGFVPQHD 79 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~---G~I~~~g~~~~~~------~~~~~i~~v~Q~~ 79 (212)
.+++.+ |.+.+|++++|+|+||+|||||+++|+++..+ +. |.|.+.|.++... .-....++|+|..
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~-d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQA-DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCC-CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 455444 99999999999999999999999999999887 44 8999999988431 1123457777754
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.54 E-value=6.6e-07 Score=77.64 Aligned_cols=40 Identities=30% Similarity=0.516 Sum_probs=31.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~ 61 (212)
.++.++.|.||+||||||+++++.+.+.+...+.|..-..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd 159 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED 159 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC
Confidence 5688999999999999999999998665323566655433
No 484
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.54 E-value=6.8e-08 Score=77.36 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=26.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.53 E-value=3.1e-06 Score=66.82 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCc-cccCCCCCCCChHHHHHHH--HHHHHhh-CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 111 TVDALLKELGLL-KCKNSVLNVLSGGERKRVA--LAVQTII-VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 111 ~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~--lA~al~~-~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. .++++ |+| +|..+..++++.|.++..
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445666666664 3345567789999999987 5555543 34443 899 999999999999887643
No 486
>PRK00098 GTPase RsgA; Reviewed
Probab=98.52 E-value=2.8e-07 Score=78.43 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=50.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc-cc--cceEEEEcCCCCCC----CCCCHHHHHH
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN-LM--VKVSGFVPQHDLTV----DTLTVHEHMT 92 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~-~~--~~~i~~v~Q~~~~~----~~ltv~e~l~ 92 (212)
+|++++++|+||+|||||+|.|.|...+ ..|+|.. .|+..+.. .+ ....+|+.+.|.+. ..++..+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~-~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLEL-KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCC-CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence 5899999999999999999999998887 5899876 44444321 11 12357888888765 4456555444
Q ss_pred H
Q psy8250 93 L 93 (212)
Q Consensus 93 ~ 93 (212)
+
T Consensus 242 ~ 242 (298)
T PRK00098 242 Y 242 (298)
T ss_pred H
Confidence 3
No 487
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.52 E-value=2.4e-07 Score=88.99 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=73.6
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
+-+|+++. +.+.++.|.|||.+||||+||.++-..- . ..|. |||-... .+++.+.+
T Consensus 597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA-q~G~------------------~VPa~~a---~i~~~d~I 653 (854)
T PRK05399 597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA-QIGS------------------FVPAESA---RIGIVDRI 653 (854)
T ss_pred EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH-hcCC------------------ceeccce---EecccCee
Confidence 44566666 6678999999999999999999864321 1 1221 2222110 00111111
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh--CCCeEEecCC---CC-CChhh
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII--VQSGFVPQHD---LT-VDTLT 165 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~--~p~llilDEP---t~-lD~~~ 165 (212)
+.++|- .+.....+|.-+.....++..|-. +++++|+||| |+ +|..+
T Consensus 654 ------------------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a 706 (854)
T PRK05399 654 ------------------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS 706 (854)
T ss_pred ------------------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH
Confidence 111121 122334577777777777777755 8999999999 88 88444
Q ss_pred HHHHHHHHHHHHhhc------CcchHHHH
Q psy8250 166 VHEHMTLMARLKMDR------NLHHVERA 188 (212)
Q Consensus 166 ~~~~~~~l~~l~~~~------~~h~~~~~ 188 (212)
..+.++..+.+.. .||+.+..
T Consensus 707 --ia~aile~l~~~~~~~~l~aTH~~el~ 733 (854)
T PRK05399 707 --IAWAVAEYLHDKIGAKTLFATHYHELT 733 (854)
T ss_pred --HHHHHHHHHHhcCCceEEEEechHHHH
Confidence 4555666655432 27885544
No 488
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.52 E-value=2e-07 Score=65.44 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCCCCCChHHHH-HHHHHHHH------hh------CCCeEEecCCCC-CChhhHHHHHHHHHH
Q psy8250 126 NSVLNVLSGGERK-RVALAVQT------II------VQSGFVPQHDLT-VDTLTVHEHMTLMAR 175 (212)
Q Consensus 126 ~~~~~~LSgGqrq-Rv~lA~al------~~------~p~llilDEPt~-lD~~~~~~~~~~l~~ 175 (212)
.+..+.+||||+| .+.+|.++ .. .|.+++|||||+ +|+.....+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4667899999994 44444333 22 379999999999 999999999998864
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.51 E-value=3.1e-07 Score=72.04 Aligned_cols=33 Identities=45% Similarity=0.819 Sum_probs=27.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~ 58 (212)
|++++|+||||||||||++.|++.+.+ .|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~--~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG--DPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc--CCcEEE
Confidence 678999999999999999999998654 354544
No 490
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.51 E-value=2e-07 Score=82.57 Aligned_cols=53 Identities=26% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
.+..+++++ +.+.+|++++|+|+||+|||||+++|++...+ +.|.|.+.|++.
T Consensus 123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~-~~gvi~~~Ger~ 175 (413)
T TIGR03497 123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKA-DINVIALIGERG 175 (413)
T ss_pred ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CeEEEEEEccch
Confidence 356789999 99999999999999999999999999999888 589888888654
No 491
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.50 E-value=1.4e-07 Score=84.16 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=96.6
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----------ccccceEEEEcCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----------NLMVKVSGFVPQH 78 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----------~~~~~~i~~v~Q~ 78 (212)
+..+++++ |.+.+|+.++|+|+||+|||||+++|++...+ +.|.+...|..-.. ..+++.+-++.+-
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 45789999 99999999999999999999999999999888 57777665543321 1122333333332
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
. .+..+-..-+ . ....+.+.+..-|-.-.. ...+|+- .|+|+= -=-+.+.||
T Consensus 228 d-----~~p~~r~~~~-~-----------~a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~R--Eisl~~ge~ 279 (440)
T TIGR01026 228 D-----QSPLLRLKGA-Y-----------VATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQR--EIGLAAGEP 279 (440)
T ss_pred C-----CCHHHHHHHH-H-----------HHHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHH--HHHHhcCCC
Confidence 1 1222111100 0 011122222222432110 1122221 111110 000345676
Q ss_pred CC---CChhhHHHHHHHHHHHHhhcC------------cchHH-HHHHHHHHHHhcCeeecCCchhh
Q psy8250 159 LT---VDTLTVHEHMTLMARLKMDRN------------LHHVE-RARTVDALLKELGLLKCRPADEL 209 (212)
Q Consensus 159 t~---lD~~~~~~~~~~l~~l~~~~~------------~h~~~-~~~~~~~~l~~g~~~~~~~~~~~ 209 (212)
.+ .|+.....+.+++.+...... .||+. .+.+....+.+|+++.++..++.
T Consensus 280 P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 280 PATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhC
Confidence 44 699999999999988764421 37763 34455567779999888876654
No 492
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=1.8e-07 Score=81.84 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHH
Q psy8250 130 NVLSGGERKRVALAVQTII---------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERA 188 (212)
Q Consensus 130 ~~LSgGqrqRv~lA~al~~---------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~ 188 (212)
..+|.||+|++.||.+|+. +|+++|||||++ ||+..+..+++.|.....+ -++|+.+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~ 344 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHL 344 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhc
Confidence 3699999999999999999 999999999999 9999999999999764111 135776543
No 493
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.48 E-value=2.5e-07 Score=81.93 Aligned_cols=52 Identities=25% Similarity=0.196 Sum_probs=45.8
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
+..+++ .+|.+.+|+.++|+|+||+|||||+++|++...| +.|.|.+.|...
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~-~~gvi~~iGer~ 178 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDA-DVVVIALVGERG 178 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEeeec
Confidence 445665 6999999999999999999999999999999988 589998888754
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.47 E-value=1.1e-07 Score=76.23 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=43.1
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
.+|.+++|+|+||||||||.+.|.+.+.+...|.++++|.++... +...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~-~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG-LCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh-hhhcCCcCcccH
Confidence 678999999999999999999999977652356899999776421 112356776654
No 495
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.46 E-value=2.6e-07 Score=81.82 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=47.0
Q ss_pred cccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 4 FHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 4 l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++...+ +.+.+...|.+
T Consensus 117 ~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~-~~~vi~~iGer 174 (411)
T TIGR03496 117 IDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA-DVVVVGLIGER 174 (411)
T ss_pred cceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEEecC
Confidence 344453 56788888 99999999999999999999999999999888 57776666654
No 496
>PRK02224 chromosome segregation protein; Provisional
Probab=98.46 E-value=1.7e-07 Score=90.42 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCCCCChHHHH------HHHHHHHHhhC-----C-CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHH
Q psy8250 128 VLNVLSGGERK------RVALAVQTIIV-----Q-SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERA 188 (212)
Q Consensus 128 ~~~~LSgGqrq------Rv~lA~al~~~-----p-~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~ 188 (212)
.+..||||||+ |+++|++++.. | +.+|+||||+ +|+.....+.++|..+.... .|||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 35789999999 89999999874 3 6799999999 99999999999999987431 37998877
Q ss_pred HHH
Q psy8250 189 RTV 191 (212)
Q Consensus 189 ~~~ 191 (212)
..+
T Consensus 858 ~~a 860 (880)
T PRK02224 858 GAA 860 (880)
T ss_pred Hhc
Confidence 543
No 497
>PLN02796 D-glycerate 3-kinase
Probab=98.45 E-value=5.1e-08 Score=83.96 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=44.1
Q ss_pred ceeeeeEEEE---cCCcE-----EEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCc
Q psy8250 12 NYKESLSGIA---ESGSL-----LAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEK 65 (212)
Q Consensus 12 ~~l~~vs~~i---~~Ge~-----~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~ 65 (212)
.+++.+++.+ ++|+. +||+|+||||||||++.|.+++.+. ..|.|.++|..++.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~ 143 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA 143 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence 4677888776 56776 9999999999999999999998752 25888999887654
No 498
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.44 E-value=8.5e-06 Score=78.15 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 17 vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
+||.+..+..++|+||+|||||||++.|++.... ..++|.+.+.+-
T Consensus 439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~-~~~~i~~~D~~~ 484 (800)
T PRK13898 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMK-FSPRMFFFDKDR 484 (800)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhccc-CCCeEEEeCCCc
Confidence 5677778889999999999999999999997776 477877765543
No 499
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.42 E-value=2.9e-07 Score=92.30 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 126 NSVLNVLSGGERKRVA----LAVQ--------TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~----lA~a--------l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
++.++.|||||||+++ +|++ +..+|++++|||||+ +|+.+...+++++.++..
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~ 1307 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDL 1307 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCC
Confidence 4457899999999996 5645 558999999999999 999999999999999854
No 500
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.42 E-value=3.1e-07 Score=92.03 Aligned_cols=51 Identities=16% Similarity=0.048 Sum_probs=43.4
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
+...+.+..|++.+| +++|+|+|||||||+|++|++++.| ..|.+.|++.+
T Consensus 14 N~~~~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~-~~~~~~f~~~~ 64 (1486)
T PRK04863 14 NWNGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTT 64 (1486)
T ss_pred cccCccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccC-CCCeEEECCcc
Confidence 344566778999887 9999999999999999999999988 58889888653
Done!