Query psy8250
Match_columns 212
No_of_seqs 266 out of 2707
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:34:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 2E-56 6.8E-61 388.0 20.7 207 1-211 6-223 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-56 4.1E-61 386.9 16.5 207 1-211 7-228 (359)
3 3tui_C Methionine import ATP-b 100.0 5.3E-56 1.8E-60 383.3 20.1 207 1-211 27-253 (366)
4 3tif_A Uncharacterized ABC tra 100.0 7.4E-56 2.5E-60 363.2 16.4 210 1-211 4-234 (235)
5 1z47_A CYSA, putative ABC-tran 100.0 3.6E-55 1.2E-59 377.7 20.1 207 1-211 17-235 (355)
6 1b0u_A Histidine permease; ABC 100.0 3.2E-55 1.1E-59 364.7 18.8 206 1-210 9-241 (262)
7 2olj_A Amino acid ABC transpor 100.0 4.2E-55 1.4E-59 364.1 18.9 206 1-210 27-247 (263)
8 2it1_A 362AA long hypothetical 100.0 6E-55 2E-59 377.3 19.7 207 1-211 6-223 (362)
9 1g29_1 MALK, maltose transport 100.0 8E-55 2.7E-59 378.1 19.6 207 1-211 6-229 (372)
10 2yyz_A Sugar ABC transporter, 100.0 3.6E-55 1.2E-59 378.3 17.0 207 1-211 6-223 (359)
11 1oxx_K GLCV, glucose, ABC tran 100.0 4.9E-55 1.7E-59 377.2 16.8 207 1-211 6-230 (353)
12 3gfo_A Cobalt import ATP-bindi 100.0 2.1E-55 7.3E-60 367.9 13.8 206 1-210 10-232 (275)
13 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-54 3.7E-59 360.4 16.9 206 1-210 18-234 (256)
14 4g1u_C Hemin import ATP-bindin 100.0 7.1E-55 2.4E-59 363.4 15.5 204 1-210 14-236 (266)
15 2pcj_A ABC transporter, lipopr 100.0 1E-54 3.5E-59 354.0 15.9 201 1-205 7-222 (224)
16 1v43_A Sugar-binding transport 100.0 9.5E-55 3.2E-59 377.3 16.7 206 2-211 15-231 (372)
17 3d31_A Sulfate/molybdate ABC t 100.0 3.4E-54 1.2E-58 371.0 17.5 203 1-211 4-217 (348)
18 1ji0_A ABC transporter; ATP bi 100.0 1.1E-53 3.6E-58 351.4 16.2 205 1-210 9-227 (240)
19 1g6h_A High-affinity branched- 100.0 1.2E-54 4E-59 360.4 10.5 207 1-208 10-239 (257)
20 2onk_A Molybdate/tungstate ABC 100.0 2.8E-53 9.4E-58 348.9 14.9 201 1-210 4-215 (240)
21 2yz2_A Putative ABC transporte 100.0 6.5E-53 2.2E-57 351.5 10.4 205 1-210 5-226 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-52 4.8E-57 346.6 10.6 207 1-208 6-230 (250)
23 2ixe_A Antigen peptide transpo 100.0 1.5E-52 5.2E-57 350.1 9.3 208 1-210 19-244 (271)
24 2nq2_C Hypothetical ABC transp 100.0 3.1E-51 1.1E-55 339.1 16.9 198 1-210 7-216 (253)
25 2ihy_A ABC transporter, ATP-bi 100.0 2E-52 6.9E-57 350.7 8.7 209 1-210 24-251 (279)
26 3nh6_A ATP-binding cassette SU 100.0 3.9E-52 1.3E-56 352.7 10.3 199 1-210 56-276 (306)
27 1sgw_A Putative ABC transporte 100.0 5.3E-51 1.8E-55 329.9 15.0 180 1-190 13-198 (214)
28 2zu0_C Probable ATP-dependent 100.0 3.4E-51 1.2E-55 341.3 13.7 209 1-210 23-253 (267)
29 2ff7_A Alpha-hemolysin translo 100.0 1.3E-51 4.3E-56 340.4 10.8 199 1-210 10-231 (247)
30 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-50 4.3E-55 334.7 14.4 195 2-210 8-221 (249)
31 1mv5_A LMRA, multidrug resista 100.0 3.6E-51 1.2E-55 336.9 10.0 200 1-210 4-225 (243)
32 2pjz_A Hypothetical protein ST 100.0 2.6E-50 9E-55 335.2 11.0 199 1-211 4-215 (263)
33 3gd7_A Fusion complex of cysti 100.0 3.5E-50 1.2E-54 350.6 5.5 198 1-211 22-242 (390)
34 2ghi_A Transport protein; mult 100.0 2.4E-49 8E-54 329.1 10.2 198 1-210 20-241 (260)
35 2pze_A Cystic fibrosis transme 100.0 8.4E-49 2.9E-53 320.1 11.0 189 1-211 9-218 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.9E-48 6.4E-53 319.6 6.1 194 1-210 6-216 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 3.4E-47 1.2E-51 347.6 12.9 201 1-211 344-567 (582)
38 3qf4_A ABC transporter, ATP-bi 100.0 5E-48 1.7E-52 353.4 5.8 204 1-211 344-566 (587)
39 2yl4_A ATP-binding cassette SU 100.0 7.4E-47 2.5E-51 346.2 13.4 202 1-210 344-569 (595)
40 4a82_A Cystic fibrosis transme 100.0 6.3E-48 2.2E-52 352.2 5.5 200 1-211 342-564 (578)
41 3b60_A Lipid A export ATP-bind 100.0 2.8E-47 9.6E-52 348.2 8.1 200 1-210 344-566 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 5.8E-47 2E-51 347.1 9.5 200 1-211 357-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.9E-45 6.5E-50 309.8 9.3 184 2-210 44-246 (290)
44 3g5u_A MCG1178, multidrug resi 100.0 9.5E-44 3.2E-48 348.4 11.3 204 1-211 390-613 (1284)
45 4f4c_A Multidrug resistance pr 100.0 9.1E-45 3.1E-49 356.4 3.2 201 2-211 1080-1304(1321)
46 4f4c_A Multidrug resistance pr 100.0 1.2E-43 4.2E-48 348.3 7.6 200 1-211 418-641 (1321)
47 3bk7_A ABC transporter ATP-bin 100.0 6.3E-42 2.1E-46 313.6 15.0 190 2-210 361-562 (607)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-41 3.8E-46 308.4 13.8 190 2-210 291-492 (538)
49 3g5u_A MCG1178, multidrug resi 100.0 1.1E-42 3.9E-47 340.8 7.2 201 2-211 1034-1258(1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 5.8E-41 2E-45 303.5 12.2 173 2-191 273-452 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.7E-39 9.1E-44 296.0 16.1 190 3-210 351-558 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-39 4E-44 295.2 9.6 176 2-191 25-224 (538)
53 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-39 6.3E-44 300.8 10.6 199 10-211 30-298 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 1.6E-39 5.5E-44 297.6 8.1 176 2-191 95-294 (607)
55 2iw3_A Elongation factor 3A; a 100.0 1.6E-37 5.4E-42 294.7 13.7 184 3-210 440-634 (986)
56 2iw3_A Elongation factor 3A; a 100.0 3.3E-38 1.1E-42 299.3 5.6 196 1-205 674-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-36 4.2E-41 281.9 9.7 190 11-211 335-640 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-35 6.3E-40 267.5 8.3 174 3-191 4-203 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 3.4E-35 1.2E-39 268.8 9.4 178 2-191 81-287 (608)
60 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.4E-37 1.2E-41 274.1 -17.4 186 2-210 122-337 (460)
61 3pih_A Uvrabc system protein A 100.0 3.4E-32 1.1E-36 257.7 14.1 192 11-211 597-902 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 7.5E-33 2.6E-37 261.4 8.0 191 12-211 638-942 (972)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.8E-32 6.3E-37 257.6 8.3 196 13-211 512-827 (842)
64 2ygr_A Uvrabc system protein A 100.0 3.7E-32 1.3E-36 257.3 6.9 190 12-210 656-959 (993)
65 4aby_A DNA repair protein RECN 100.0 7E-31 2.4E-35 230.0 8.5 194 8-203 45-380 (415)
66 3b85_A Phosphate starvation-in 100.0 1.8E-33 6E-38 226.3 -13.3 145 6-190 8-163 (208)
67 1tq4_A IIGP1, interferon-induc 99.9 1.2E-30 4E-35 228.9 -9.1 145 11-177 36-213 (413)
68 4gp7_A Metallophosphoesterase; 99.9 2E-28 6.8E-33 190.7 4.0 141 16-190 1-164 (171)
69 2v9p_A Replication protein E1; 99.9 8.3E-32 2.8E-36 227.7 -20.7 156 2-209 105-264 (305)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.8E-27 2.3E-31 202.5 9.5 77 126-202 274-364 (365)
71 3aez_A Pantothenate kinase; tr 99.9 1.1E-29 3.6E-34 215.8 -12.2 121 21-162 87-208 (312)
72 3sop_A Neuronal-specific septi 99.9 1.3E-28 4.5E-33 205.2 -7.6 135 26-178 4-139 (270)
73 1e69_A Chromosome segregation 99.9 6.9E-26 2.3E-30 192.9 8.9 64 124-187 212-284 (322)
74 3b9q_A Chloroplast SRP recepto 99.9 9.2E-28 3.1E-32 203.0 -5.1 144 6-166 82-238 (302)
75 1znw_A Guanylate kinase, GMP k 99.9 1E-28 3.6E-33 197.6 -12.5 166 11-191 9-194 (207)
76 1ye8_A Protein THEP1, hypothet 99.9 1.2E-26 4.2E-31 182.1 -0.5 142 26-202 2-159 (178)
77 1z6g_A Guanylate kinase; struc 99.9 3.5E-29 1.2E-33 202.3 -16.2 173 10-196 9-206 (218)
78 2dpy_A FLII, flagellum-specifi 99.9 1.8E-26 6.2E-31 204.0 -1.3 181 1-210 134-343 (438)
79 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.5E-25 8.7E-30 190.2 4.0 126 12-200 159-292 (330)
80 2og2_A Putative signal recogni 99.9 2.7E-26 9.3E-31 198.0 -4.0 135 15-166 148-295 (359)
81 2jeo_A Uridine-cytidine kinase 99.9 5.1E-25 1.8E-29 180.5 -3.2 140 7-163 8-148 (245)
82 2obl_A ESCN; ATPase, hydrolase 99.9 1.3E-23 4.5E-28 180.6 1.5 181 1-210 48-254 (347)
83 2qnr_A Septin-2, protein NEDD5 99.9 7.1E-25 2.4E-29 185.2 -10.0 157 2-185 2-167 (301)
84 2o5v_A DNA replication and rep 99.9 2.1E-22 7.2E-27 173.8 4.3 83 126-209 259-354 (359)
85 2o8b_B DNA mismatch repair pro 99.8 2.6E-22 9.1E-27 192.6 -0.2 151 4-201 761-930 (1022)
86 2eyu_A Twitching motility prot 99.8 1.8E-21 6.3E-26 161.2 4.4 102 12-170 15-117 (261)
87 1cr0_A DNA primase/helicase; R 99.8 1.1E-21 3.8E-26 164.5 1.1 154 11-179 22-185 (296)
88 1pui_A ENGB, probable GTP-bind 99.8 5.8E-23 2E-27 163.0 -7.0 170 1-179 6-199 (210)
89 1rj9_A FTSY, signal recognitio 99.8 5.8E-22 2E-26 167.6 -1.7 145 23-187 101-260 (304)
90 3qkt_A DNA double-strand break 99.8 3.2E-19 1.1E-23 152.7 15.0 62 125-186 242-315 (339)
91 3pih_A Uvrabc system protein A 99.8 3.7E-21 1.3E-25 182.4 2.4 155 39-210 383-559 (916)
92 3asz_A Uridine kinase; cytidin 99.8 1.4E-22 4.6E-27 161.7 -6.4 131 21-177 3-147 (211)
93 4ad8_A DNA repair protein RECN 99.8 9.7E-20 3.3E-24 164.1 11.4 65 127-191 392-464 (517)
94 1ewq_A DNA mismatch repair pro 99.8 5.8E-21 2E-25 178.6 3.3 128 9-189 564-702 (765)
95 3thx_B DNA mismatch repair pro 99.8 1.6E-20 5.5E-25 178.2 5.0 135 10-190 659-801 (918)
96 1tf7_A KAIC; homohexamer, hexa 99.8 5.9E-24 2E-28 191.9 -17.8 156 3-188 17-188 (525)
97 1tf7_A KAIC; homohexamer, hexa 99.8 7.5E-20 2.6E-24 165.1 8.7 132 18-185 275-417 (525)
98 3thx_A DNA mismatch repair pro 99.8 2.6E-21 8.8E-26 184.0 -1.4 144 10-209 648-811 (934)
99 1htw_A HI0065; nucleotide-bind 99.8 1E-21 3.5E-26 151.2 -4.5 87 2-93 11-97 (158)
100 3szr_A Interferon-induced GTP- 99.8 2.1E-21 7.3E-26 178.0 -6.1 145 1-178 13-182 (608)
101 2qag_C Septin-7; cell cycle, c 99.8 1.4E-20 4.8E-25 165.3 -2.3 138 1-166 14-158 (418)
102 2r6f_A Excinuclease ABC subuni 99.8 9.3E-19 3.2E-23 165.7 9.0 124 83-211 450-600 (972)
103 2qag_B Septin-6, protein NEDD5 99.8 3.9E-20 1.3E-24 162.4 -0.3 167 2-179 20-208 (427)
104 2qm8_A GTPase/ATPase; G protei 99.8 7E-22 2.4E-26 169.3 -12.2 171 2-178 33-260 (337)
105 2i3b_A HCR-ntpase, human cance 99.8 2.9E-21 1E-25 152.8 -7.8 126 24-175 1-134 (189)
106 2bbw_A Adenylate kinase 4, AK4 99.8 1.8E-21 6.1E-26 159.2 -9.5 145 23-178 26-198 (246)
107 2rcn_A Probable GTPase ENGC; Y 99.8 2.5E-19 8.7E-24 154.2 3.4 122 13-146 205-328 (358)
108 1w1w_A Structural maintenance 99.7 2.4E-18 8E-23 151.6 9.6 61 128-188 330-400 (430)
109 1p9r_A General secretion pathw 99.7 1.1E-21 3.9E-26 172.3 -12.9 146 2-155 147-315 (418)
110 2ehv_A Hypothetical protein PH 99.7 3.9E-20 1.3E-24 150.3 -3.0 145 20-188 26-185 (251)
111 1zp6_A Hypothetical protein AT 99.7 1.1E-20 3.6E-25 148.2 -6.5 141 20-177 5-148 (191)
112 2ygr_A Uvrabc system protein A 99.7 1.5E-18 5.3E-23 164.6 5.6 125 82-211 466-617 (993)
113 1wb9_A DNA mismatch repair pro 99.7 5E-19 1.7E-23 166.3 2.0 149 9-204 593-751 (800)
114 2f1r_A Molybdopterin-guanine d 99.7 1.9E-20 6.4E-25 145.9 -6.8 138 25-184 3-167 (171)
115 1nlf_A Regulatory protein REPA 99.7 4.2E-17 1.5E-21 135.6 11.2 147 20-188 26-184 (279)
116 1s96_A Guanylate kinase, GMP k 99.7 1.6E-19 5.5E-24 145.9 -3.6 140 19-210 11-159 (219)
117 1pzn_A RAD51, DNA repair and r 99.7 1.2E-19 4.1E-24 156.1 -4.9 154 13-205 119-309 (349)
118 4a74_A DNA repair and recombin 99.7 8E-19 2.7E-23 140.8 0.2 121 20-179 21-168 (231)
119 1lw7_A Transcriptional regulat 99.7 1.3E-20 4.3E-25 162.9 -13.0 168 13-211 157-355 (365)
120 3jvv_A Twitching mobility prot 99.7 9E-18 3.1E-22 144.7 4.1 116 20-193 119-239 (356)
121 2yv5_A YJEQ protein; hydrolase 99.7 7.3E-19 2.5E-23 148.4 -3.1 122 20-144 161-300 (302)
122 2vf7_A UVRA2, excinuclease ABC 99.7 3.2E-17 1.1E-21 154.4 6.8 103 108-211 356-475 (842)
123 2bdt_A BH3686; alpha-beta prot 99.7 4.3E-19 1.5E-23 139.1 -6.8 166 24-209 2-182 (189)
124 2gza_A Type IV secretion syste 99.7 4.7E-17 1.6E-21 140.5 5.3 110 14-179 165-276 (361)
125 2w0m_A SSO2452; RECA, SSPF, un 99.6 3.3E-16 1.1E-20 125.3 6.3 145 11-185 9-168 (235)
126 1in4_A RUVB, holliday junction 99.6 2.2E-18 7.6E-23 147.1 -7.0 166 2-187 22-204 (334)
127 1nij_A Hypothetical protein YJ 99.6 3.7E-20 1.3E-24 157.4 -19.4 141 25-177 5-177 (318)
128 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 5.1E-16 1.7E-20 118.0 5.5 62 125-186 51-124 (148)
129 2yhs_A FTSY, cell division pro 99.6 9.4E-18 3.2E-22 149.3 -5.4 81 14-95 283-372 (503)
130 2ewv_A Twitching motility prot 99.6 2.8E-16 9.4E-21 136.2 3.8 98 13-167 127-225 (372)
131 1u0l_A Probable GTPase ENGC; p 99.6 1.7E-17 5.8E-22 139.9 -4.3 108 19-134 164-294 (301)
132 1odf_A YGR205W, hypothetical 3 99.6 3E-17 1E-21 137.8 -3.5 126 22-164 29-168 (290)
133 3e70_C DPA, signal recognition 99.6 6.3E-17 2.2E-21 138.0 -2.9 133 21-179 126-267 (328)
134 1t9h_A YLOQ, probable GTPase E 99.6 9.5E-17 3.3E-21 135.6 -2.5 119 19-139 168-303 (307)
135 1udx_A The GTP-binding protein 99.6 1.6E-16 5.4E-21 139.5 -1.5 133 14-175 147-292 (416)
136 3c8u_A Fructokinase; YP_612366 99.6 2.2E-17 7.5E-22 131.7 -6.9 133 21-177 19-170 (208)
137 2x8a_A Nuclear valosin-contain 99.5 2.5E-19 8.5E-24 149.3 -21.4 145 7-173 29-190 (274)
138 1sq5_A Pantothenate kinase; P- 99.5 5E-16 1.7E-20 131.2 -3.9 92 2-98 41-156 (308)
139 3kta_B Chromosome segregation 99.5 3.1E-14 1.1E-18 110.8 6.6 64 125-188 58-130 (173)
140 1vma_A Cell division protein F 99.5 3.5E-14 1.2E-18 119.9 6.2 114 16-177 96-212 (306)
141 2kjq_A DNAA-related protein; s 99.5 3.5E-14 1.2E-18 107.8 5.3 82 13-179 30-113 (149)
142 2cvh_A DNA repair and recombin 99.5 3.1E-14 1E-18 113.2 4.9 125 12-179 7-144 (220)
143 1ls1_A Signal recognition part 99.4 1.9E-13 6.5E-18 114.8 8.3 128 3-177 81-210 (295)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.9E-15 9.8E-20 130.5 -5.1 160 20-206 16-208 (392)
145 1lvg_A Guanylate kinase, GMP k 99.4 2.7E-17 9.1E-22 130.5 -16.6 37 142-178 116-154 (198)
146 1iy2_A ATP-dependent metallopr 99.4 1.5E-17 5E-22 138.2 -19.0 137 2-158 53-194 (278)
147 3euj_A Chromosome partition pr 99.4 4.1E-14 1.4E-18 126.0 1.8 54 9-64 15-68 (483)
148 1sxj_E Activator 1 40 kDa subu 99.4 2.5E-13 8.5E-18 115.7 6.3 124 26-178 38-163 (354)
149 1ixz_A ATP-dependent metallopr 99.4 1.7E-17 5.9E-22 135.8 -19.5 138 2-159 29-171 (254)
150 3ec2_A DNA replication protein 99.4 3.4E-13 1.2E-17 104.6 5.9 99 18-179 32-132 (180)
151 3k1j_A LON protease, ATP-depen 99.4 4.8E-15 1.6E-19 135.7 -7.5 166 4-175 40-227 (604)
152 1n0w_A DNA repair protein RAD5 99.3 9E-13 3.1E-17 106.2 6.2 43 20-62 20-68 (243)
153 3tr0_A Guanylate kinase, GMP k 99.3 9.4E-14 3.2E-18 109.4 -1.9 68 18-90 1-71 (205)
154 1qhl_A Protein (cell division 99.3 6E-14 2.1E-18 113.7 -4.1 59 18-78 22-91 (227)
155 1oix_A RAS-related protein RAB 99.2 1.2E-11 4.1E-16 96.6 4.4 36 138-175 152-188 (191)
156 3auy_A DNA double-strand break 99.2 2.4E-11 8.2E-16 104.9 6.4 60 127-186 276-347 (371)
157 3lda_A DNA repair protein RAD5 99.2 6.9E-11 2.4E-15 103.1 8.8 42 20-62 174-222 (400)
158 2oap_1 GSPE-2, type II secreti 99.1 1.9E-11 6.5E-16 109.8 3.7 164 12-190 248-455 (511)
159 3lnc_A Guanylate kinase, GMP k 99.1 1.2E-11 4.1E-16 99.6 1.9 39 12-50 15-54 (231)
160 1svm_A Large T antigen; AAA+ f 99.1 4.8E-14 1.6E-18 122.2 -14.5 138 12-160 157-312 (377)
161 2qtf_A Protein HFLX, GTP-bindi 99.1 4.5E-10 1.6E-14 96.8 10.4 145 23-179 177-354 (364)
162 2f9l_A RAB11B, member RAS onco 99.1 7.3E-12 2.5E-16 98.2 -2.2 36 140-177 130-166 (199)
163 4eun_A Thermoresistant glucoki 99.0 6.1E-12 2.1E-16 99.3 -3.4 76 13-93 18-95 (200)
164 3kta_A Chromosome segregation 99.0 9.7E-11 3.3E-15 90.6 3.4 124 10-141 11-152 (182)
165 2ius_A DNA translocase FTSK; n 99.0 4.9E-12 1.7E-16 113.4 -5.3 151 15-179 158-327 (512)
166 2px0_A Flagellar biosynthesis 99.0 1.5E-09 5.1E-14 91.0 9.8 103 22-174 103-206 (296)
167 4e22_A Cytidylate kinase; P-lo 98.9 4.4E-11 1.5E-15 98.0 -1.5 56 22-78 25-95 (252)
168 2dhr_A FTSH; AAA+ protein, hex 98.9 4.5E-13 1.5E-17 120.0 -14.6 136 4-159 46-186 (499)
169 3nwj_A ATSK2; P loop, shikimat 98.9 5.1E-11 1.7E-15 97.8 -1.3 48 1-48 20-72 (250)
170 2j41_A Guanylate kinase; GMP, 98.9 2.1E-10 7.2E-15 90.1 2.3 35 19-54 1-35 (207)
171 2r6a_A DNAB helicase, replicat 98.9 1.8E-10 6.1E-15 102.0 1.4 150 11-179 190-352 (454)
172 3uie_A Adenylyl-sulfate kinase 98.9 5.2E-11 1.8E-15 93.9 -2.7 61 2-64 3-65 (200)
173 3a00_A Guanylate kinase, GMP k 98.9 4.1E-10 1.4E-14 87.8 1.3 27 24-50 1-27 (186)
174 1zu4_A FTSY; GTPase, signal re 98.9 3.9E-10 1.3E-14 95.6 1.2 80 14-94 95-187 (320)
175 2zr9_A Protein RECA, recombina 98.8 1.6E-09 5.6E-14 92.8 4.6 30 20-49 57-86 (349)
176 1kgd_A CASK, peripheral plasma 98.7 4.2E-09 1.5E-13 81.6 2.7 37 22-58 3-39 (180)
177 3tqc_A Pantothenate kinase; bi 98.7 7.7E-10 2.6E-14 93.8 -1.9 46 4-49 66-117 (321)
178 3vaa_A Shikimate kinase, SK; s 98.7 7.8E-09 2.7E-13 81.2 3.6 39 10-48 11-49 (199)
179 2dr3_A UPF0273 protein PH0284; 98.7 2.4E-07 8.3E-12 74.1 11.9 47 13-60 11-59 (247)
180 2ce7_A Cell division protein F 98.6 8.9E-09 3E-13 91.6 3.0 38 9-48 36-73 (476)
181 3t34_A Dynamin-related protein 98.6 2.3E-07 8E-12 79.4 11.4 57 1-61 11-72 (360)
182 2vp4_A Deoxynucleoside kinase; 98.6 1.1E-08 3.8E-13 82.3 2.0 41 18-63 14-54 (230)
183 3tau_A Guanylate kinase, GMP k 98.6 4.2E-08 1.4E-12 77.6 4.2 29 22-50 6-34 (208)
184 1rz3_A Hypothetical protein rb 98.5 1E-08 3.4E-13 80.8 0.4 42 21-63 19-60 (201)
185 4a1f_A DNAB helicase, replicat 98.5 7.3E-08 2.5E-12 82.2 5.7 120 12-179 34-153 (338)
186 3ney_A 55 kDa erythrocyte memb 98.5 3E-08 1E-12 78.4 2.9 32 18-49 13-44 (197)
187 2p67_A LAO/AO transport system 98.5 3.1E-09 1.1E-13 90.7 -3.1 59 3-62 35-93 (341)
188 1knq_A Gluconate kinase; ALFA/ 98.5 3.3E-08 1.1E-12 75.7 1.9 37 22-63 6-42 (175)
189 3cr8_A Sulfate adenylyltranfer 98.5 3.2E-08 1.1E-12 89.6 1.7 43 20-63 365-409 (552)
190 3m6a_A ATP-dependent protease 98.5 1E-08 3.5E-13 92.7 -1.9 58 3-62 88-145 (543)
191 2xau_A PRE-mRNA-splicing facto 98.4 1.5E-07 5.1E-12 88.4 4.9 63 126-188 185-255 (773)
192 2e87_A Hypothetical protein PH 98.4 1.2E-07 4.2E-12 81.1 3.2 111 23-177 166-278 (357)
193 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 2.2E-07 7.6E-12 70.0 3.9 32 14-46 14-45 (149)
194 1cke_A CK, MSSA, protein (cyti 98.4 1.6E-08 5.6E-13 80.4 -2.9 56 23-79 4-74 (227)
195 1kag_A SKI, shikimate kinase I 98.3 1.8E-07 6.1E-12 71.2 2.8 27 23-49 3-29 (173)
196 3hr8_A Protein RECA; alpha and 98.3 7.4E-08 2.5E-12 82.7 0.4 71 20-91 57-128 (356)
197 2qag_A Septin-2, protein NEDD5 98.3 3.9E-08 1.3E-12 84.6 -2.4 51 2-59 21-71 (361)
198 2ffh_A Protein (FFH); SRP54, s 98.3 1.3E-07 4.3E-12 83.1 0.7 57 3-64 81-137 (425)
199 1fnn_A CDC6P, cell division co 98.2 1.7E-06 5.9E-11 73.6 7.1 28 23-50 41-70 (389)
200 1mky_A Probable GTP-binding pr 98.2 1.3E-06 4.5E-11 76.7 6.5 146 26-179 182-355 (439)
201 2qt1_A Nicotinamide riboside k 98.2 5.1E-07 1.7E-11 70.9 2.8 30 19-48 16-45 (207)
202 2www_A Methylmalonic aciduria 98.2 3.5E-07 1.2E-11 78.3 1.5 41 22-63 72-112 (349)
203 1j8m_F SRP54, signal recogniti 98.2 1.2E-07 4.2E-12 79.4 -1.6 57 3-63 79-136 (297)
204 3kl4_A SRP54, signal recogniti 98.2 5.1E-06 1.7E-10 73.0 8.5 37 23-60 96-132 (433)
205 2pez_A Bifunctional 3'-phospho 98.2 4.6E-07 1.6E-11 69.6 1.4 40 22-63 3-44 (179)
206 3bh0_A DNAB-like replicative h 98.1 3.2E-06 1.1E-10 71.1 6.5 121 11-177 55-175 (315)
207 3qks_A DNA double-strand break 98.1 1.4E-06 4.7E-11 68.8 3.9 31 14-45 14-44 (203)
208 1sxj_C Activator 1 40 kDa subu 98.1 4.4E-07 1.5E-11 76.9 -0.2 49 2-50 22-72 (340)
209 3ice_A Transcription terminati 98.1 1.3E-06 4.5E-11 75.6 2.7 47 2-48 137-198 (422)
210 4eaq_A DTMP kinase, thymidylat 98.1 1.4E-06 4.7E-11 70.2 2.7 44 13-58 12-58 (229)
211 1m7g_A Adenylylsulfate kinase; 98.1 7.3E-07 2.5E-11 70.4 1.0 44 19-63 20-65 (211)
212 1jjv_A Dephospho-COA kinase; P 98.0 3.1E-06 1.1E-10 66.3 3.4 21 26-46 4-24 (206)
213 2gj8_A MNME, tRNA modification 98.0 6.8E-06 2.3E-10 62.5 5.1 27 22-48 2-28 (172)
214 1m2o_B GTP-binding protein SAR 98.0 5.9E-06 2E-10 63.8 4.6 51 12-63 12-69 (190)
215 2dy1_A Elongation factor G; tr 97.9 8E-07 2.7E-11 82.2 -1.0 45 18-63 3-48 (665)
216 1y63_A LMAJ004144AAA protein; 97.9 4.3E-06 1.5E-10 64.6 3.3 32 16-47 2-33 (184)
217 3b9p_A CG5977-PA, isoform A; A 97.9 2.4E-05 8.3E-10 64.5 7.9 26 23-48 53-78 (297)
218 1f6b_A SAR1; gtpases, N-termin 97.9 2.1E-06 7.1E-11 66.9 1.1 55 7-62 8-70 (198)
219 2qor_A Guanylate kinase; phosp 97.9 4.8E-06 1.7E-10 65.3 3.2 28 21-48 9-36 (204)
220 2yvu_A Probable adenylyl-sulfa 97.9 3.8E-06 1.3E-10 64.8 2.2 39 21-60 10-49 (186)
221 2if2_A Dephospho-COA kinase; a 97.9 4.6E-06 1.6E-10 65.1 2.7 21 26-46 3-23 (204)
222 2wji_A Ferrous iron transport 97.9 2E-05 6.8E-10 59.2 5.6 23 26-48 5-27 (165)
223 2wjg_A FEOB, ferrous iron tran 97.8 1.4E-05 4.6E-10 61.0 4.3 22 26-47 9-30 (188)
224 3auy_A DNA double-strand break 97.8 9.5E-06 3.2E-10 69.7 3.7 33 12-45 14-46 (371)
225 2ohf_A Protein OLA1, GTP-bindi 97.8 1.1E-05 3.9E-10 70.0 4.2 41 20-61 18-69 (396)
226 1ega_A Protein (GTP-binding pr 97.8 8.9E-06 3E-10 68.0 2.4 41 132-179 101-145 (301)
227 2ga8_A Hypothetical 39.9 kDa p 97.7 3.8E-06 1.3E-10 71.9 -0.5 37 12-48 10-48 (359)
228 1lv7_A FTSH; alpha/beta domain 97.7 8.8E-06 3E-10 65.9 1.7 46 13-63 36-81 (257)
229 3t61_A Gluconokinase; PSI-biol 97.7 1.6E-05 5.4E-10 62.0 3.0 25 24-48 18-42 (202)
230 1np6_A Molybdopterin-guanine d 97.7 1.5E-05 5E-10 61.6 2.7 38 25-62 7-46 (174)
231 3cm0_A Adenylate kinase; ATP-b 97.7 1.8E-05 6.3E-10 60.5 3.2 25 22-46 2-26 (186)
232 1q3t_A Cytidylate kinase; nucl 97.7 2.6E-05 9E-10 62.5 3.6 26 21-46 13-38 (236)
233 3kb2_A SPBC2 prophage-derived 97.6 3.7E-05 1.2E-09 57.8 3.4 23 26-48 3-25 (173)
234 1qhx_A CPT, protein (chloramph 97.6 4.7E-05 1.6E-09 57.8 3.7 25 24-48 3-27 (178)
235 2p5t_B PEZT; postsegregational 97.6 2.9E-05 1E-09 63.0 2.6 41 20-63 28-68 (253)
236 2zej_A Dardarin, leucine-rich 97.6 3.9E-05 1.3E-09 58.7 3.1 23 26-48 4-26 (184)
237 1kht_A Adenylate kinase; phosp 97.5 5.9E-05 2E-09 57.6 3.6 25 24-48 3-27 (192)
238 3lxx_A GTPase IMAP family memb 97.5 7.4E-05 2.5E-09 59.7 4.1 25 26-50 31-55 (239)
239 4ag6_A VIRB4 ATPase, type IV s 97.5 3.3E-05 1.1E-09 66.6 2.1 36 23-59 34-69 (392)
240 1vht_A Dephospho-COA kinase; s 97.5 6.8E-05 2.3E-09 59.1 3.5 24 23-46 3-26 (218)
241 3lw7_A Adenylate kinase relate 97.5 6.6E-05 2.3E-09 56.2 3.3 19 26-44 3-21 (179)
242 1ex7_A Guanylate kinase; subst 97.5 6.2E-05 2.1E-09 58.7 3.2 23 26-48 3-25 (186)
243 3r20_A Cytidylate kinase; stru 97.5 6.7E-05 2.3E-09 60.6 3.4 23 24-46 9-31 (233)
244 1ypw_A Transitional endoplasmi 97.4 4.7E-05 1.6E-09 71.8 2.6 42 19-63 233-274 (806)
245 2ze6_A Isopentenyl transferase 97.4 6.7E-05 2.3E-09 61.0 3.2 23 26-48 3-25 (253)
246 2rhm_A Putative kinase; P-loop 97.4 6.4E-05 2.2E-09 57.7 2.9 26 22-47 3-28 (193)
247 2jaq_A Deoxyguanosine kinase; 97.4 8.4E-05 2.9E-09 57.4 3.4 23 26-48 2-24 (205)
248 1gtv_A TMK, thymidylate kinase 97.4 2.4E-05 8.4E-10 61.1 0.1 25 26-50 2-26 (214)
249 4fcw_A Chaperone protein CLPB; 97.4 8.1E-06 2.8E-10 67.6 -3.0 50 9-59 21-82 (311)
250 2v54_A DTMP kinase, thymidylat 97.4 0.00012 4.1E-09 56.7 3.9 26 23-48 3-28 (204)
251 1via_A Shikimate kinase; struc 97.4 8.2E-05 2.8E-09 56.5 2.8 23 26-48 6-28 (175)
252 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.8E-09 56.1 3.6 26 23-48 4-29 (185)
253 2q6t_A DNAB replication FORK h 97.4 0.00048 1.7E-08 60.4 8.1 36 13-48 189-224 (444)
254 3iij_A Coilin-interacting nucl 97.3 9.9E-05 3.4E-09 56.3 3.1 25 22-46 9-33 (180)
255 1ly1_A Polynucleotide kinase; 97.3 0.00012 4.1E-09 55.4 3.4 22 25-46 3-24 (181)
256 1gvn_B Zeta; postsegregational 97.3 0.00011 3.8E-09 60.9 3.4 37 21-60 30-66 (287)
257 3ihw_A Centg3; RAS, centaurin, 97.3 0.00031 1.1E-08 53.7 5.5 36 26-62 22-66 (184)
258 2plr_A DTMP kinase, probable t 97.3 0.00014 4.7E-09 56.5 3.6 27 23-49 3-29 (213)
259 1jal_A YCHF protein; nucleotid 97.3 0.00021 7.1E-09 61.4 4.8 36 24-60 2-48 (363)
260 1uf9_A TT1252 protein; P-loop, 97.3 0.00013 4.4E-09 56.4 3.1 24 24-47 8-31 (203)
261 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.8E-09 55.8 3.3 26 22-47 7-32 (196)
262 3k53_A Ferrous iron transport 97.3 0.00012 3.9E-09 59.9 2.9 24 26-49 5-28 (271)
263 2wwf_A Thymidilate kinase, put 97.3 0.00015 5.1E-09 56.5 3.3 26 22-47 8-33 (212)
264 1xjc_A MOBB protein homolog; s 97.2 0.00016 5.5E-09 55.4 3.3 25 25-49 5-29 (169)
265 1tev_A UMP-CMP kinase; ploop, 97.2 0.00018 6.1E-09 55.0 3.5 23 24-46 3-25 (196)
266 1nn5_A Similar to deoxythymidy 97.2 0.00016 5.5E-09 56.4 3.2 28 21-48 6-33 (215)
267 1nks_A Adenylate kinase; therm 97.2 0.00017 6E-09 55.0 2.9 23 26-48 3-25 (194)
268 3ake_A Cytidylate kinase; CMP 97.2 0.0002 6.7E-09 55.6 3.2 23 26-48 4-26 (208)
269 2z0h_A DTMP kinase, thymidylat 97.2 0.00022 7.6E-09 54.7 3.4 23 26-48 2-24 (197)
270 3llm_A ATP-dependent RNA helic 97.2 0.00016 5.3E-09 57.8 2.5 25 21-45 73-97 (235)
271 2ged_A SR-beta, signal recogni 97.2 0.00022 7.6E-09 54.4 3.3 25 25-49 49-73 (193)
272 3cf0_A Transitional endoplasmi 97.2 0.00022 7.4E-09 59.3 3.4 40 20-62 45-84 (301)
273 1ko7_A HPR kinase/phosphatase; 97.1 0.00025 8.6E-09 59.6 3.6 38 8-46 129-166 (314)
274 2vli_A Antibiotic resistance p 97.1 0.00018 6.3E-09 54.6 2.4 26 23-48 4-29 (183)
275 1aky_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 55.2 3.7 27 22-48 2-28 (220)
276 2bwj_A Adenylate kinase 5; pho 97.1 0.00027 9.2E-09 54.3 3.1 27 21-47 9-35 (199)
277 3b1v_A Ferrous iron uptake tra 97.1 0.0003 1E-08 57.8 3.5 23 26-48 5-27 (272)
278 1z2a_A RAS-related protein RAB 97.1 0.00031 1.1E-08 51.9 3.2 23 26-48 7-29 (168)
279 2nzj_A GTP-binding protein REM 97.1 0.00032 1.1E-08 52.3 3.2 23 26-48 6-28 (175)
280 3fb4_A Adenylate kinase; psych 97.1 0.00032 1.1E-08 54.9 3.4 22 26-47 2-23 (216)
281 2pbr_A DTMP kinase, thymidylat 97.1 0.00034 1.2E-08 53.4 3.4 23 26-48 2-24 (195)
282 2dyk_A GTP-binding protein; GT 97.0 0.00035 1.2E-08 51.4 3.3 23 26-48 3-25 (161)
283 1kao_A RAP2A; GTP-binding prot 97.0 0.00032 1.1E-08 51.7 3.0 23 26-48 5-27 (167)
284 2erx_A GTP-binding protein DI- 97.0 0.00038 1.3E-08 51.6 3.5 22 26-47 5-26 (172)
285 1zd8_A GTP:AMP phosphotransfer 97.0 0.00031 1.1E-08 55.7 3.1 27 22-48 5-31 (227)
286 2qmh_A HPR kinase/phosphorylas 97.0 0.00068 2.3E-08 53.4 4.9 37 10-47 21-57 (205)
287 2cdn_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 53.6 3.8 27 22-48 18-44 (201)
288 1u8z_A RAS-related protein RAL 97.0 0.00034 1.2E-08 51.6 3.0 23 26-48 6-28 (168)
289 1z0j_A RAB-22, RAS-related pro 97.0 0.00034 1.2E-08 51.8 3.0 23 26-48 8-30 (170)
290 1ukz_A Uridylate kinase; trans 97.0 0.00042 1.4E-08 53.7 3.6 25 23-47 14-38 (203)
291 3q85_A GTP-binding protein REM 97.0 0.00041 1.4E-08 51.5 3.4 23 26-48 4-26 (169)
292 1e6c_A Shikimate kinase; phosp 97.0 0.00031 1.1E-08 52.8 2.8 23 25-47 3-25 (173)
293 3dl0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 54.5 3.4 23 26-48 2-24 (216)
294 1zuh_A Shikimate kinase; alpha 97.0 0.00042 1.4E-08 52.1 3.4 23 25-47 8-30 (168)
295 3lxw_A GTPase IMAP family memb 97.0 0.00038 1.3E-08 56.2 3.3 24 26-49 23-46 (247)
296 3q72_A GTP-binding protein RAD 97.0 0.00025 8.5E-09 52.5 2.1 23 26-48 4-26 (166)
297 1fzq_A ADP-ribosylation factor 97.0 0.00027 9.3E-09 53.8 2.4 24 25-48 17-40 (181)
298 2pt5_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 51.9 3.4 22 26-47 2-23 (168)
299 2lkc_A Translation initiation 97.0 0.00048 1.7E-08 51.5 3.7 25 23-47 7-31 (178)
300 1z08_A RAS-related protein RAB 97.0 0.00036 1.2E-08 51.7 3.0 23 26-48 8-30 (170)
301 1ek0_A Protein (GTP-binding pr 97.0 0.00036 1.2E-08 51.6 3.0 23 26-48 5-27 (170)
302 2ce2_X GTPase HRAS; signaling 97.0 0.00033 1.1E-08 51.4 2.7 23 26-48 5-27 (166)
303 1ky3_A GTP-binding protein YPT 97.0 0.00042 1.4E-08 51.9 3.3 23 26-48 10-32 (182)
304 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00038 1.3E-08 52.1 3.0 23 26-48 9-31 (177)
305 1c1y_A RAS-related protein RAP 97.0 0.00038 1.3E-08 51.4 3.0 22 26-47 5-26 (167)
306 3tw8_B RAS-related protein RAB 97.0 0.00034 1.2E-08 52.4 2.7 23 26-48 11-33 (181)
307 1zak_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 55.3 2.7 25 23-47 4-28 (222)
308 1v5w_A DMC1, meiotic recombina 97.0 0.00046 1.6E-08 58.5 3.7 28 20-47 118-145 (343)
309 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00048 1.7E-08 56.0 3.6 25 23-47 3-27 (260)
310 1svi_A GTP-binding protein YSX 97.0 0.00036 1.2E-08 53.2 2.7 24 25-48 24-47 (195)
311 3bos_A Putative DNA replicatio 97.0 0.00054 1.8E-08 53.8 3.7 27 23-49 51-77 (242)
312 2z43_A DNA repair and recombin 97.0 0.00061 2.1E-08 57.2 4.3 28 20-47 103-130 (324)
313 1g16_A RAS-related protein SEC 96.9 0.00035 1.2E-08 51.8 2.5 23 26-48 5-27 (170)
314 2iyv_A Shikimate kinase, SK; t 96.9 0.00038 1.3E-08 53.1 2.7 23 25-47 3-25 (184)
315 1qf9_A UMP/CMP kinase, protein 96.9 0.0004 1.4E-08 52.9 2.8 24 24-47 6-29 (194)
316 3pqc_A Probable GTP-binding pr 96.9 0.00038 1.3E-08 52.8 2.7 23 26-48 25-47 (195)
317 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00045 1.5E-08 52.2 3.0 23 26-48 6-28 (189)
318 2grj_A Dephospho-COA kinase; T 96.9 0.00051 1.7E-08 53.6 3.4 24 24-47 12-35 (192)
319 1uj2_A Uridine-cytidine kinase 96.9 0.0005 1.7E-08 55.5 3.4 24 25-48 23-46 (252)
320 3t1o_A Gliding protein MGLA; G 96.9 0.0005 1.7E-08 52.2 3.2 25 26-50 16-40 (198)
321 2fn4_A P23, RAS-related protei 96.9 0.00039 1.3E-08 52.1 2.5 22 26-47 11-32 (181)
322 1r2q_A RAS-related protein RAB 96.9 0.00048 1.6E-08 50.9 3.0 22 26-47 8-29 (170)
323 3clv_A RAB5 protein, putative; 96.9 0.00047 1.6E-08 52.4 3.0 23 26-48 9-31 (208)
324 1njg_A DNA polymerase III subu 96.9 0.00014 4.8E-09 56.8 -0.0 36 13-48 31-69 (250)
325 1wf3_A GTP-binding protein; GT 96.9 0.00051 1.8E-08 57.2 3.4 23 26-48 9-31 (301)
326 2cxx_A Probable GTP-binding pr 96.9 0.00039 1.3E-08 52.6 2.4 23 26-48 3-25 (190)
327 1upt_A ARL1, ADP-ribosylation 96.9 0.00055 1.9E-08 50.8 3.2 23 25-47 8-30 (171)
328 2hxs_A RAB-26, RAS-related pro 96.9 0.00056 1.9E-08 51.2 3.3 23 26-48 8-30 (178)
329 2oil_A CATX-8, RAS-related pro 96.9 0.00048 1.6E-08 52.6 2.9 23 26-48 27-49 (193)
330 2w58_A DNAI, primosome compone 96.9 0.00046 1.6E-08 53.4 2.8 25 25-49 55-79 (202)
331 3bc1_A RAS-related protein RAB 96.9 0.00056 1.9E-08 51.7 3.2 23 26-48 13-35 (195)
332 3tlx_A Adenylate kinase 2; str 96.9 0.00063 2.1E-08 54.8 3.6 25 22-46 27-51 (243)
333 2dby_A GTP-binding protein; GD 96.9 0.00046 1.6E-08 59.3 3.0 22 26-47 3-24 (368)
334 2qby_A CDC6 homolog 1, cell di 96.9 0.0004 1.4E-08 58.5 2.5 28 22-49 43-70 (386)
335 1moz_A ARL1, ADP-ribosylation 96.9 0.00028 9.5E-09 53.2 1.4 23 24-46 18-40 (183)
336 1r8s_A ADP-ribosylation factor 96.9 0.00055 1.9E-08 50.5 3.0 22 26-47 2-23 (164)
337 1a7j_A Phosphoribulokinase; tr 96.9 0.0003 1E-08 58.4 1.7 26 23-48 4-29 (290)
338 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 54.0 3.4 22 26-47 2-23 (223)
339 1sxj_D Activator 1 41 kDa subu 96.9 0.00021 7.1E-09 59.9 0.6 40 9-48 41-82 (353)
340 2a9k_A RAS-related protein RAL 96.8 0.00057 2E-08 51.4 3.0 23 26-48 20-42 (187)
341 2g6b_A RAS-related protein RAB 96.8 0.00058 2E-08 51.2 3.0 23 26-48 12-34 (180)
342 3iev_A GTP-binding protein ERA 96.8 0.00063 2.1E-08 56.8 3.4 23 26-48 12-34 (308)
343 3con_A GTPase NRAS; structural 96.8 0.00065 2.2E-08 51.6 3.2 23 26-48 23-45 (190)
344 1z0f_A RAB14, member RAS oncog 96.8 0.00068 2.3E-08 50.6 3.2 23 26-48 17-39 (179)
345 1nrj_B SR-beta, signal recogni 96.8 0.00066 2.3E-08 52.9 3.2 24 26-49 14-37 (218)
346 2y8e_A RAB-protein 6, GH09086P 96.8 0.00051 1.8E-08 51.3 2.5 22 26-47 16-37 (179)
347 2efe_B Small GTP-binding prote 96.8 0.00065 2.2E-08 51.0 3.0 23 26-48 14-36 (181)
348 3t5d_A Septin-7; GTP-binding p 96.8 0.0005 1.7E-08 56.2 2.5 23 26-48 10-32 (274)
349 2f6r_A COA synthase, bifunctio 96.8 0.00059 2E-08 56.2 2.9 23 24-46 75-97 (281)
350 2bov_A RAla, RAS-related prote 96.8 0.00065 2.2E-08 52.1 3.0 23 26-48 16-38 (206)
351 2xtp_A GTPase IMAP family memb 96.8 0.00064 2.2E-08 54.8 2.9 24 25-48 23-46 (260)
352 1vg8_A RAS-related protein RAB 96.8 0.00076 2.6E-08 51.9 3.3 23 26-48 10-32 (207)
353 1jbk_A CLPB protein; beta barr 96.8 0.001 3.4E-08 50.0 3.8 27 22-48 41-67 (195)
354 2gf9_A RAS-related protein RAB 96.8 0.00071 2.4E-08 51.5 3.0 23 26-48 24-46 (189)
355 3iby_A Ferrous iron transport 96.8 0.00066 2.2E-08 55.2 2.9 23 26-48 3-25 (256)
356 3cbq_A GTP-binding protein REM 96.8 0.00056 1.9E-08 52.8 2.4 22 26-47 25-46 (195)
357 3tkl_A RAS-related protein RAB 96.8 0.00072 2.5E-08 51.5 3.0 23 26-48 18-40 (196)
358 2bme_A RAB4A, RAS-related prot 96.8 0.0006 2.1E-08 51.5 2.5 23 26-48 12-34 (186)
359 1ksh_A ARF-like protein 2; sma 96.7 0.0008 2.7E-08 50.9 3.1 26 23-48 17-42 (186)
360 3kkq_A RAS-related protein M-R 96.7 0.00085 2.9E-08 50.5 3.2 23 26-48 20-42 (183)
361 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.00079 2.7E-08 50.6 3.0 22 26-47 7-28 (186)
362 4edh_A DTMP kinase, thymidylat 96.7 0.00097 3.3E-08 52.8 3.5 28 22-49 4-31 (213)
363 3v9p_A DTMP kinase, thymidylat 96.7 0.00078 2.7E-08 54.0 3.0 29 21-49 22-50 (227)
364 2gf0_A GTP-binding protein DI- 96.7 0.00067 2.3E-08 51.8 2.5 22 26-47 10-31 (199)
365 1zbd_A Rabphilin-3A; G protein 96.7 0.00089 3E-08 51.5 3.2 23 26-48 10-32 (203)
366 2wsm_A Hydrogenase expression/ 96.7 0.00075 2.6E-08 52.8 2.8 24 25-48 31-54 (221)
367 2fg5_A RAB-22B, RAS-related pr 96.7 0.0007 2.4E-08 51.8 2.5 23 26-48 25-47 (192)
368 1z06_A RAS-related protein RAB 96.7 0.00086 2.9E-08 51.0 3.0 23 26-48 22-44 (189)
369 4dhe_A Probable GTP-binding pr 96.7 0.00044 1.5E-08 54.1 1.3 24 25-48 30-53 (223)
370 1m7b_A RND3/RHOE small GTP-bin 96.7 0.00076 2.6E-08 51.2 2.7 23 26-48 9-31 (184)
371 3be4_A Adenylate kinase; malar 96.7 0.00088 3E-08 52.7 3.1 26 23-48 4-29 (217)
372 3a1s_A Iron(II) transport prot 96.7 0.00097 3.3E-08 54.2 3.5 23 26-48 7-29 (258)
373 1ltq_A Polynucleotide kinase; 96.7 0.00094 3.2E-08 55.0 3.4 22 25-46 3-24 (301)
374 1e4v_A Adenylate kinase; trans 96.7 0.0008 2.7E-08 52.7 2.8 22 26-47 2-23 (214)
375 2cjw_A GTP-binding protein GEM 96.7 0.00096 3.3E-08 51.3 3.2 21 26-46 8-28 (192)
376 3d3q_A TRNA delta(2)-isopenten 96.7 0.00094 3.2E-08 56.7 3.4 24 25-48 8-31 (340)
377 2il1_A RAB12; G-protein, GDP, 96.7 0.00079 2.7E-08 51.5 2.6 23 26-48 28-50 (192)
378 2a5j_A RAS-related protein RAB 96.7 0.00089 3E-08 51.1 2.9 23 26-48 23-45 (191)
379 1jwy_B Dynamin A GTPase domain 96.7 0.00082 2.8E-08 55.6 2.9 23 26-48 26-48 (315)
380 3oes_A GTPase rhebl1; small GT 96.6 0.00079 2.7E-08 51.9 2.5 24 25-48 25-48 (201)
381 2qu8_A Putative nucleolar GTP- 96.6 0.00099 3.4E-08 52.6 3.1 23 25-47 30-52 (228)
382 3reg_A RHO-like small GTPase; 96.6 0.00098 3.3E-08 50.9 3.0 23 26-48 25-47 (194)
383 1zd9_A ADP-ribosylation factor 96.6 0.00098 3.4E-08 50.8 3.0 23 26-48 24-46 (188)
384 3i8s_A Ferrous iron transport 96.6 0.00091 3.1E-08 54.8 2.9 23 26-48 5-27 (274)
385 2atv_A RERG, RAS-like estrogen 96.6 0.001 3.5E-08 50.9 3.0 23 25-47 29-51 (196)
386 3t5g_A GTP-binding protein RHE 96.6 0.00092 3.2E-08 50.2 2.7 21 26-46 8-28 (181)
387 2o52_A RAS-related protein RAB 96.6 0.0009 3.1E-08 51.6 2.7 23 26-48 27-49 (200)
388 1x3s_A RAS-related protein RAB 96.6 0.0011 3.9E-08 50.2 3.2 23 26-48 17-39 (195)
389 3cph_A RAS-related protein SEC 96.6 0.001 3.5E-08 51.4 3.0 25 24-48 20-44 (213)
390 4bas_A ADP-ribosylation factor 96.6 0.0011 3.6E-08 50.7 3.0 24 25-48 18-41 (199)
391 1ak2_A Adenylate kinase isoenz 96.6 0.0014 4.7E-08 52.2 3.8 27 22-48 14-40 (233)
392 2p5s_A RAS and EF-hand domain 96.6 0.001 3.5E-08 51.2 2.9 25 24-48 28-52 (199)
393 1zj6_A ADP-ribosylation factor 96.6 0.001 3.5E-08 50.5 2.9 23 25-47 17-39 (187)
394 3lv8_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 53.4 3.2 28 22-49 25-52 (236)
395 2ew1_A RAS-related protein RAB 96.6 0.00086 2.9E-08 52.1 2.5 23 26-48 28-50 (201)
396 1l8q_A Chromosomal replication 96.6 0.0009 3.1E-08 55.8 2.7 26 24-49 37-62 (324)
397 3dz8_A RAS-related protein RAB 96.6 0.00097 3.3E-08 50.9 2.7 23 26-48 25-47 (191)
398 3bwd_D RAC-like GTP-binding pr 96.6 0.0014 4.7E-08 49.2 3.5 24 25-48 9-32 (182)
399 3llu_A RAS-related GTP-binding 96.6 0.001 3.5E-08 51.1 2.8 24 26-49 22-45 (196)
400 2bcg_Y Protein YP2, GTP-bindin 96.6 0.00088 3E-08 51.7 2.5 23 26-48 10-32 (206)
401 2f7s_A C25KG, RAS-related prot 96.6 0.0012 4E-08 51.4 3.2 23 26-48 27-49 (217)
402 3h4m_A Proteasome-activating n 96.6 0.0012 4.1E-08 53.8 3.3 29 21-49 48-76 (285)
403 2iwr_A Centaurin gamma 1; ANK 96.6 0.00087 3E-08 50.3 2.3 23 26-48 9-31 (178)
404 3cnl_A YLQF, putative uncharac 96.6 0.0012 4.1E-08 54.0 3.2 26 25-50 100-125 (262)
405 3a8t_A Adenylate isopentenyltr 96.6 0.0015 5E-08 55.5 3.9 26 23-48 39-64 (339)
406 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0013 4.6E-08 58.1 3.8 31 19-49 146-176 (473)
407 2h57_A ADP-ribosylation factor 96.6 0.00076 2.6E-08 51.4 2.0 24 25-48 22-45 (190)
408 3zvl_A Bifunctional polynucleo 96.6 0.0012 4.1E-08 57.5 3.4 26 21-46 255-280 (416)
409 2q3h_A RAS homolog gene family 96.6 0.0012 4.2E-08 50.6 3.2 26 23-48 19-44 (201)
410 3exa_A TRNA delta(2)-isopenten 96.6 0.0014 4.7E-08 55.2 3.6 25 24-48 3-27 (322)
411 4tmk_A Protein (thymidylate ki 96.6 0.0013 4.4E-08 52.2 3.2 27 23-49 2-28 (213)
412 2h17_A ADP-ribosylation factor 96.6 0.00098 3.3E-08 50.4 2.4 22 26-47 23-44 (181)
413 2p65_A Hypothetical protein PF 96.5 0.0013 4.5E-08 49.3 3.1 27 22-48 41-67 (187)
414 2h92_A Cytidylate kinase; ross 96.5 0.0012 4.3E-08 51.6 3.0 25 24-48 3-27 (219)
415 2fh5_B SR-beta, signal recogni 96.5 0.0014 4.7E-08 50.9 3.2 23 26-48 9-31 (214)
416 3c5c_A RAS-like protein 12; GD 96.5 0.0015 5E-08 49.9 3.3 23 26-48 23-45 (187)
417 3def_A T7I23.11 protein; chlor 96.5 0.0012 4.1E-08 53.5 2.9 23 26-48 38-60 (262)
418 2fv8_A H6, RHO-related GTP-bin 96.5 0.0012 4.1E-08 51.1 2.7 24 25-48 26-49 (207)
419 3crm_A TRNA delta(2)-isopenten 96.5 0.0015 5E-08 55.2 3.4 24 25-48 6-29 (323)
420 2j1l_A RHO-related GTP-binding 96.5 0.0013 4.6E-08 51.3 2.9 22 26-47 36-57 (214)
421 3ld9_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 51.9 3.6 27 22-48 19-45 (223)
422 1gwn_A RHO-related GTP-binding 96.5 0.0012 4.2E-08 51.3 2.7 23 26-48 30-52 (205)
423 2aka_B Dynamin-1; fusion prote 96.5 0.0012 4E-08 54.1 2.7 23 26-48 28-50 (299)
424 2fu5_C RAS-related protein RAB 96.5 0.00083 2.8E-08 50.6 1.7 23 26-48 10-32 (183)
425 1h65_A Chloroplast outer envel 96.5 0.0013 4.5E-08 53.5 2.9 23 26-48 41-63 (270)
426 3tmk_A Thymidylate kinase; pho 96.5 0.0016 5.3E-08 51.8 3.2 28 22-49 3-30 (216)
427 2i1q_A DNA repair and recombin 96.5 0.0016 5.4E-08 54.4 3.2 27 20-46 94-120 (322)
428 2ocp_A DGK, deoxyguanosine kin 96.5 0.0015 5.3E-08 52.1 3.1 25 24-48 2-26 (241)
429 2gco_A H9, RHO-related GTP-bin 96.4 0.0013 4.4E-08 50.7 2.5 23 26-48 27-49 (201)
430 2b6h_A ADP-ribosylation factor 96.4 0.0012 4.1E-08 50.6 2.1 24 24-47 29-52 (192)
431 2g3y_A GTP-binding protein GEM 96.4 0.002 7E-08 50.7 3.5 22 26-47 39-60 (211)
432 2atx_A Small GTP binding prote 96.4 0.0015 5E-08 49.9 2.5 23 26-48 20-42 (194)
433 3umf_A Adenylate kinase; rossm 96.4 0.0019 6.5E-08 51.4 3.2 28 20-47 25-52 (217)
434 2hf9_A Probable hydrogenase ni 96.4 0.0016 5.4E-08 51.1 2.7 24 25-48 39-62 (226)
435 1ypw_A Transitional endoplasmi 96.4 0.00055 1.9E-08 64.5 0.0 43 18-63 505-547 (806)
436 4dcu_A GTP-binding protein ENG 96.4 0.0015 5E-08 57.5 2.7 22 26-47 25-46 (456)
437 2z4s_A Chromosomal replication 96.4 0.0016 5.6E-08 57.0 2.9 25 24-48 130-154 (440)
438 1p5z_B DCK, deoxycytidine kina 96.4 0.0012 4.2E-08 53.4 2.0 28 21-48 21-48 (263)
439 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0022 7.6E-08 51.3 3.5 27 22-48 37-63 (262)
440 3cpj_B GTP-binding protein YPT 96.3 0.002 6.7E-08 50.6 3.0 23 26-48 15-37 (223)
441 2zts_A Putative uncharacterize 96.3 0.0029 9.8E-08 50.1 3.9 25 21-45 27-51 (251)
442 3tqf_A HPR(Ser) kinase; transf 96.3 0.0031 1E-07 48.6 3.9 33 13-46 6-38 (181)
443 3foz_A TRNA delta(2)-isopenten 96.3 0.0025 8.5E-08 53.5 3.7 25 24-48 10-34 (316)
444 2r62_A Cell division protease 96.3 0.00049 1.7E-08 55.6 -0.7 22 27-48 47-68 (268)
445 4djt_A GTP-binding nuclear pro 96.3 0.00088 3E-08 52.2 0.8 23 26-48 13-35 (218)
446 2yc2_C IFT27, small RAB-relate 96.3 0.00082 2.8E-08 51.6 0.5 22 26-47 22-43 (208)
447 2hup_A RAS-related protein RAB 96.3 0.0018 6.2E-08 50.0 2.5 23 26-48 31-53 (201)
448 3q3j_B RHO-related GTP-binding 96.2 0.0023 7.8E-08 50.0 3.0 23 25-47 28-50 (214)
449 1qvr_A CLPB protein; coiled co 96.2 0.0052 1.8E-07 58.2 5.9 26 25-50 589-614 (854)
450 4gzl_A RAS-related C3 botulinu 96.2 0.0021 7.3E-08 49.7 2.7 23 25-47 31-53 (204)
451 2x77_A ADP-ribosylation factor 96.2 0.0012 4.2E-08 50.1 1.2 22 25-46 23-44 (189)
452 2orw_A Thymidine kinase; TMTK, 96.2 0.0027 9.3E-08 48.9 3.2 23 23-45 2-25 (184)
453 1u94_A RECA protein, recombina 96.2 0.0035 1.2E-07 53.5 3.9 28 21-48 60-87 (356)
454 3dm5_A SRP54, signal recogniti 96.2 0.0024 8.3E-08 56.1 2.9 28 23-50 99-126 (443)
455 4hlc_A DTMP kinase, thymidylat 96.2 0.0034 1.2E-07 49.3 3.5 26 24-49 2-27 (205)
456 3pvs_A Replication-associated 96.1 0.0007 2.4E-08 59.6 -0.6 36 15-50 39-76 (447)
457 2j0v_A RAC-like GTP-binding pr 96.1 0.0023 8E-08 49.5 2.5 23 26-48 11-33 (212)
458 3sr0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 49.5 3.4 23 26-48 2-24 (206)
459 3n70_A Transport activator; si 96.1 0.0034 1.2E-07 46.2 3.1 28 22-49 22-49 (145)
460 3eph_A TRNA isopentenyltransfe 96.1 0.003 1E-07 54.8 3.0 24 25-48 3-26 (409)
461 2v3c_C SRP54, signal recogniti 96.1 0.0017 6E-08 56.8 1.5 31 19-49 92-124 (432)
462 2chg_A Replication factor C sm 96.0 0.0036 1.2E-07 48.1 3.1 23 26-48 40-62 (226)
463 2v1u_A Cell division control p 96.0 0.0028 9.5E-08 53.3 2.5 27 22-48 42-68 (387)
464 3p32_A Probable GTPase RV1496/ 96.0 0.0039 1.3E-07 53.0 3.3 26 23-48 78-103 (355)
465 1puj_A YLQF, conserved hypothe 95.9 0.004 1.4E-07 51.3 3.1 25 25-49 121-145 (282)
466 1wxq_A GTP-binding protein; st 95.9 0.0037 1.3E-07 54.1 2.9 41 111-155 181-221 (397)
467 3r7w_A Gtpase1, GTP-binding pr 95.9 0.0055 1.9E-07 50.9 3.8 24 24-47 3-26 (307)
468 3syl_A Protein CBBX; photosynt 95.9 0.0046 1.6E-07 50.8 3.3 27 22-48 65-91 (309)
469 2hjg_A GTP-binding protein ENG 95.9 0.0037 1.3E-07 54.6 2.8 23 26-48 5-27 (436)
470 3ec1_A YQEH GTPase; atnos1, at 95.9 0.0043 1.5E-07 53.1 3.0 25 23-47 161-185 (369)
471 3th5_A RAS-related C3 botulinu 94.8 0.0015 5E-08 50.4 0.0 23 25-47 31-53 (204)
472 2qgz_A Helicase loader, putati 95.8 0.0061 2.1E-07 50.8 3.7 26 24-49 152-177 (308)
473 1lnz_A SPO0B-associated GTP-bi 95.8 0.0049 1.7E-07 52.3 3.1 33 15-47 149-181 (342)
474 3gmt_A Adenylate kinase; ssgci 95.8 0.006 2.1E-07 48.9 3.4 24 25-48 9-32 (230)
475 2x2e_A Dynamin-1; nitration, h 95.8 0.0031 1.1E-07 53.4 1.8 23 26-48 33-55 (353)
476 3gj0_A GTP-binding nuclear pro 95.8 0.0031 1.1E-07 49.2 1.7 22 26-47 17-39 (221)
477 1d2n_A N-ethylmaleimide-sensit 95.7 0.0057 1.9E-07 49.5 3.2 27 22-48 62-88 (272)
478 1knx_A Probable HPR(Ser) kinas 95.7 0.0079 2.7E-07 50.4 4.0 37 8-45 132-168 (312)
479 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.006 2.1E-07 51.1 3.3 27 22-48 43-69 (322)
480 1ofh_A ATP-dependent HSL prote 95.7 0.0063 2.1E-07 49.7 3.2 26 24-49 50-75 (310)
481 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0068 2.3E-07 51.1 3.4 28 19-46 118-145 (331)
482 2qpt_A EH domain-containing pr 95.7 0.0048 1.7E-07 55.6 2.7 24 25-48 66-89 (550)
483 3euj_A Chromosome partition pr 95.7 0.012 4.2E-07 52.1 5.3 51 126-177 374-442 (483)
484 3l0i_B RAS-related protein RAB 95.6 0.00093 3.2E-08 51.4 -1.8 23 26-48 35-57 (199)
485 3geh_A MNME, tRNA modification 95.6 0.0042 1.4E-07 54.8 2.2 25 23-47 223-247 (462)
486 3hws_A ATP-dependent CLP prote 95.6 0.0064 2.2E-07 51.5 3.1 26 23-48 50-75 (363)
487 3h2y_A GTPase family protein; 95.6 0.0046 1.6E-07 52.9 2.2 25 23-47 159-183 (368)
488 3uk6_A RUVB-like 2; hexameric 95.6 0.0067 2.3E-07 51.0 3.2 27 23-49 69-95 (368)
489 1x6v_B Bifunctional 3'-phospho 95.6 0.0073 2.5E-07 55.3 3.5 26 23-48 51-76 (630)
490 3sjy_A Translation initiation 95.6 0.0074 2.5E-07 52.1 3.4 24 26-49 10-33 (403)
491 2qby_B CDC6 homolog 3, cell di 95.6 0.0072 2.5E-07 51.0 3.3 25 24-48 45-69 (384)
492 3d8b_A Fidgetin-like protein 1 95.6 0.0083 2.9E-07 50.9 3.7 27 22-48 115-141 (357)
493 3eie_A Vacuolar protein sortin 95.5 0.0088 3E-07 49.9 3.7 26 23-48 50-75 (322)
494 1f5n_A Interferon-induced guan 95.5 0.0052 1.8E-07 55.9 2.4 25 24-48 38-62 (592)
495 2qen_A Walker-type ATPase; unk 95.5 0.0091 3.1E-07 49.4 3.6 25 22-46 29-53 (350)
496 1m8p_A Sulfate adenylyltransfe 95.5 0.0084 2.9E-07 54.3 3.6 27 23-49 395-421 (573)
497 2r44_A Uncharacterized protein 95.5 0.0013 4.6E-08 54.8 -1.6 41 9-49 31-71 (331)
498 3t15_A Ribulose bisphosphate c 95.5 0.0079 2.7E-07 49.6 3.1 25 24-48 36-60 (293)
499 2b8t_A Thymidine kinase; deoxy 95.5 0.0098 3.4E-07 47.4 3.5 27 22-48 10-36 (223)
500 1jr3_A DNA polymerase III subu 95.4 0.0021 7.1E-08 54.2 -0.6 28 21-48 32-62 (373)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-56 Score=388.05 Aligned_cols=207 Identities=22% Similarity=0.274 Sum_probs=187.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
+++++|.|++..+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|+++|+++... ..++.+|||||++
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred EEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-CCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 47899999999999999999999999999999999999999999999999 699999999998643 3356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 ~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 9999999999999987654 3456677788999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.++++.|++++++ + +|||++++... + .+|++|+++..|+++++.+
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9 9999999999999999765 2 38999998775 3 4799999999999999864
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-56 Score=386.94 Aligned_cols=207 Identities=24% Similarity=0.287 Sum_probs=183.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC----Cc-ccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EK-NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~----~~-~~~~~~i~~v 75 (212)
+++++|+|++..+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|.++|+++ .. ...++.+|||
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i~G~~i~~~~~~~~~~~r~ig~v 85 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTNLPVRERRLGYL 85 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEECcccccccchhhCCEEEE
Confidence 46899999999999999999999999999999999999999999999999 699999999988 22 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
||++.+|+.+||+||+.|+...+ ..+..+..+++.++++.+|+.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 86 fQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 86 VQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp CTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred eCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999875432 233456677899999999999999999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||+ ||+..+.++++.|.++.++ + +|||++++... + .+|++|+++..|+++++.+
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999 9999999999988887554 2 38999998765 3 4789999999999999864
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.3e-56 Score=383.31 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=184.6
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc------cccc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN------LMVK 70 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~------~~~~ 70 (212)
++++++.|++ ..+|+||||+|++||++||+||||||||||+|+|+|++.| ++|+|.++|+++... ..++
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECSSCCHHHHHHHHT
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhC
Confidence 3689999964 4699999999999999999999999999999999999999 699999999998642 2356
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
.+|||||++.+++.+||+||+.++.... ..+..+..+++.++|+.+|+.+..++++.+|||||||||+|||||+.+|
T Consensus 106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 106 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred cEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999987653 2456677788999999999999999999999999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
++|||||||+ ||+.++..++++|++++++. +|||++.+... + .+|++|+++++|+++++..
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999 99999999999999997652 37999998775 3 4789999999999998753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.4e-56 Score=363.18 Aligned_cols=210 Identities=22% Similarity=0.253 Sum_probs=177.1
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------cc
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MV 69 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~ 69 (212)
+++++++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|.++.... .+
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~ 82 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTKIRR 82 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHhh
Confidence 4689999974 4599999999999999999999999999999999999999 6999999999985421 13
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+.+|||||++.+++.+||+||+.++.........+..+..+++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred ccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 4699999999999999999999987654322233456667788999999999875 499999999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|++|||||||+ ||+.++.+++++|++++++ + +|||++.+..++ .+|++|+++..++++++.+
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 234 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC----
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhcc
Confidence 999999999999 9999999999999999765 3 379998653333 4788999999999888754
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.6e-55 Score=377.66 Aligned_cols=207 Identities=24% Similarity=0.306 Sum_probs=185.0
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCC
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~ 78 (212)
++++++.| +++.+|+||||+|++||+++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||+
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 95 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLPPQKRNVGLVFQN 95 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEECCEECCcCChhhCcEEEEecC
Confidence 46899999 888899999999999999999999999999999999999999 699999999998542 345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 96 ~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999999999999976543 234556677899999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ ||+..+.+++++|++++++ . +|||.+++... + .+|++|+++..|+++++.+
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99 9999999999999999765 2 38999998764 3 4789999999999998864
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-55 Score=364.71 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=180.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---------------
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------------- 65 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--------------- 65 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDKDGQLKVADKNQ 87 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred EeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEccccccccccccccChhh
Confidence 36899999988899999999999999999999999999999999999999 69999999998851
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHH
Q psy8250 66 -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 66 -~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~l 142 (212)
..+++.+|||||++.+++.+||+||+.++. ..+ ..+..+..+++.++++.+|+.+. .++++.+|||||||||+|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 123467999999999999999999999854 322 22344556778999999999998 999999999999999999
Q ss_pred HHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 143 AVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 143 A~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+.+|++|||||||+ ||+.++..++++|+++++++ .|||++.+... + .+|++|++++.|+++++.
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999 99999999999999997653 27999988764 3 478899999999998874
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.2e-55 Score=364.07 Aligned_cols=206 Identities=22% Similarity=0.349 Sum_probs=180.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--cc---cccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--KN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~~---~~~~~i~~v 75 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++. .. .+++.++||
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 105 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTNLNKVREEVGMV 105 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEESSSTTCCHHHHHHHEEEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCEECCCccccHHHHhCcEEEE
Confidence 36899999988899999999999999999999999999999999999999 6999999999884 11 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHH-hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
||++.+++.+||+||+.++. ... ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 106 ~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 106 FQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999864 322 23344556678999999999999999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||+ ||+.++..++++|+++++++ .|||++.+... + .+|++|++++.|+++++.
T Consensus 183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999 99999999999999997653 37999988764 3 478899999999998874
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6e-55 Score=377.32 Aligned_cols=207 Identities=25% Similarity=0.319 Sum_probs=184.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|++|||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 84 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDRNVGLVFQNW 84 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGTTEEEECTTC
T ss_pred EEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CceEEEECCEECCcCCHhHCcEEEEecCc
Confidence 36899999988899999999999999999999999999999999999999 699999999998542 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 85 ALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp CCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 9999999999999986543 2345566678999999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9 9999999999999999764 2 37999988764 3 4789999999999998864
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8e-55 Score=378.07 Aligned_cols=207 Identities=24% Similarity=0.289 Sum_probs=184.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------c-cccceEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------N-LMVKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~-~~~~~i~ 73 (212)
+++++++|+++.+|+||||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++.. . ..++.+|
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~r~ig 84 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIFVPPKDRDIA 84 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGTEECCGGGSSEE
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-CccEEEECCEECccccccccCCHhHCCEE
Confidence 36899999988899999999999999999999999999999999999999 69999999998743 1 2356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
||||++.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 85 ~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 85 MVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999986543 2345556678999999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||||||+ ||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999 9999999999999999765 2 37999988764 3 4789999999999999864
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-55 Score=378.31 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=183.1
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++.+|+++||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 84 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIPPKYREVGMVFQNY 84 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGTTEEEECSSC
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-CccEEEECCEECCCCChhhCcEEEEecCc
Confidence 36899999988899999999999999999999999999999999999999 699999999998543 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 85 ALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp CCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 9999999999999865432 2233444567899999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9 9999999999999999765 2 37999988764 3 4789999999999999864
No 11
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.9e-55 Score=377.20 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=183.8
Q ss_pred CcccccccCCcc--eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc------ccccceE
Q psy8250 1 METFHPLFGDTN--YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------NLMVKVS 72 (212)
Q Consensus 1 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~------~~~~~~i 72 (212)
++++++.|+++. +|+||||+|++|++++|+||||||||||||+|+|++.| ++|+|.++|+++.. ...++.+
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-SEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECcccccccCChhhCCE
Confidence 368999999888 99999999999999999999999999999999999999 69999999998743 2345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 73 ~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
|||||++.+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999865432 234556667899999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||||+ ||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999 9999999999999999764 2 37999988764 3 4789999999999998864
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.1e-55 Score=367.94 Aligned_cols=206 Identities=22% Similarity=0.280 Sum_probs=179.7
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----ccccceEEE
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----~~~~~~i~~ 74 (212)
+++++++|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. ..+++.+||
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~~~ig~ 88 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRKGIMKLRESIGI 88 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred EEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEECCEECCcccccHHHHhCcEEE
Confidence 4689999975 4599999999999999999999999999999999999999 69999999999842 124567999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 75 VPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 75 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|||++. .++.+||+||+.++.... ..+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus 89 v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 89 VFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp ECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999973 445789999999976543 3456667788999999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHH-hhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLK-MDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~-~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.++..++++|++++ +++ +|||++.+... + .+|++|+++++|+++++.
T Consensus 166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999 99999999999999997 443 37999888653 3 478899999999998874
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-54 Score=360.38 Aligned_cols=206 Identities=19% Similarity=0.273 Sum_probs=181.0
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc--cccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++... .+++.+||+||+
T Consensus 18 i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~i~~v~q~ 96 (256)
T 1vpl_A 18 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVFGKNVVEEPHEVRKLISYLPEE 96 (256)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTCHHHHHTTEEEECTT
T ss_pred EEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCccHHHHhhcEEEEcCC
Confidence 46899999988999999999999999999999999999999999999998 699999999998532 245679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
+.+++.+||+||+.++...+. .+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 97 ~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 97 AGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999998654432 23344456788999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|+++++++ .||+++.+... + .+|++|++++.|+++++.
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 99 99999999999999997653 37999988653 3 478899999999988874
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.1e-55 Score=363.35 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=180.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQ 77 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q 77 (212)
++++++.|+++.+|++|||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++... .+++.++|++|
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~i~~v~q 92 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQPKALARTRAVMRQ 92 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCCHHHHhheEEEEec
Confidence 36899999999999999999999999999999999999999999999999 699999999998642 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhh------CCC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTII------VQS 151 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~------~p~ 151 (212)
++.+++.+||+||+.++...+ ...+..+++.++++.+++.+..++++.+|||||||||+|||||+. +|+
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 93 YSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp CCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred CCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 999888999999999865432 112345678899999999999999999999999999999999999 999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR------NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++.+++++|++++++. .|||++.+... + .+|++|+++++|+++++.
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999 99999999999999997653 37999998764 3 478999999999999874
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1e-54 Score=354.04 Aligned_cols=201 Identities=23% Similarity=0.257 Sum_probs=174.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc------c-cceEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL------M-VKVSG 73 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~------~-~~~i~ 73 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.... . ++.++
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLEGKEVDYTNEKELSLLRNRKLG 85 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence 36899999988899999999999999999999999999999999999998 6999999999985421 1 25699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 74 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
|+||++.+++.+||+||+.++...+ ..+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus 86 ~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 86 FVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred EEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999999876543 2234455667899999999999999999999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHHHhcCeeecCC
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALLKELGLLKCRP 205 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l~~g~~~~~~~ 205 (212)
||||||+ ||+.++..++++|+++++++ .|||++.+..++ .+|++|+++++|+
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999 99999999999999997653 279988763223 3678999988775
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.5e-55 Score=377.29 Aligned_cols=206 Identities=24% Similarity=0.281 Sum_probs=177.3
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDL 80 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~ 80 (212)
+++++.|+++.+|+++||+|++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++.
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 93 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred EEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CceEEEECCEECCCCChhhCcEEEEecCcc
Confidence 6899999988899999999999999999999999999999999999999 699999999998543 23567999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+|+.+||+||+.|+...+ ..+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 94 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 94 VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ---CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 999999999999864432 23455566789999999999999999999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 161 -VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999765 2 37999988764 3 4789999999999999864
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.4e-54 Score=370.97 Aligned_cols=203 Identities=25% Similarity=0.311 Sum_probs=180.5
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|+++ +|+++||++++|++++|+||||||||||||+|+|++.| ++|+|.++|+++... ..++.+|||||++
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-SEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-CCcEEEECCEECCCCchhhCcEEEEecCc
Confidence 46899999988 99999999999999999999999999999999999999 699999999998542 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+|+.+||+||+.|+...+.. +.. +++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 ~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred ccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 999999999999997654321 111 67889999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhhc
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+ ||+..+.+++++|++++++ + +|||.+++... + .+|++|+++..|+++++.+
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9 9999999999999999765 2 37999988764 3 4789999999999999864
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=351.36 Aligned_cols=205 Identities=19% Similarity=0.267 Sum_probs=176.4
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc----ccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~----~~~~i~~v~ 76 (212)
++++++.|+++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.... .++.++|+|
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 87 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVINRMGIALVP 87 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCCHHHHHhCCEEEEe
Confidence 36899999988899999999999999999999999999999999999999 6999999999985421 234599999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-CccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
|++.+++.+||+||+.++.... .......+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 88 EGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998853211 112234556788999995 98889999999999999999999999999999999
Q ss_pred cCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 156 QHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 156 DEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||+ ||+.++..++++|+++++++ .|||++.+... + .+|++|++++.|+++++.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999 99999999999999997543 37999887664 3 478899999999888764
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-54 Score=360.39 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=177.8
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEc
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~ 76 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++... ..++.++|+|
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 88 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTF 88 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred EeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEc
Confidence 46899999988999999999999999999999999999999999999999 699999999998542 1345699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhh-hccc---------CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARL-KMDR---------NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
|++.+++.+||+||+.++... .... .....+..+++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus 89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence 999999999999999875432 1000 012234456788999999999999999999999999999999999
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchh
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADE 208 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~ 208 (212)
+.+|++|||||||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|++++.|++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999 99999999999999997653 27999877653 3 4788999999998888
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-53 Score=348.88 Aligned_cols=201 Identities=25% Similarity=0.320 Sum_probs=174.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~ 79 (212)
++++++.|++ +|+||||++++ ++++|+||||||||||+|+|+|+++| ++|+|.++|+++... ..++.+||+||++
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDY 79 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCchhhCcEEEEcCCC
Confidence 4689999976 59999999999 99999999999999999999999999 699999999998532 3456799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL 159 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt 159 (212)
.+++.+||+||+.++...+ ......+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 80 ~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 80 ALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred ccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999999999998754321 11123567889999999999999999999999999999999999999999999999
Q ss_pred C-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 160 T-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 160 ~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+ ||+.+++.++++|++++++ + .|||++.+... + .+|++|++++.|+++++.
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9 9999999999999999654 3 37999988664 3 478899999999998874
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.5e-53 Score=351.53 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=174.8
Q ss_pred CcccccccC--C---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE
Q psy8250 1 METFHPLFG--D---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~--~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v 75 (212)
++++++.|+ + +.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++....+++.+||+
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~i~~v 83 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYEIRRNIGIA 83 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCHHHHGGGEEEE
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEECchHHhhhhEEEE
Confidence 468999997 4 5799999999999999999999999999999999999998 699999999988543445679999
Q ss_pred cCCC-CCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc--cccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 76 PQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 76 ~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
||++ ..++.+||+||+.++.... . +..+..+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++
T Consensus 84 ~q~~~~~~~~~tv~enl~~~~~~~-~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 84 FQYPEDQFFAERVFDEVAFAVKNF-Y---PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp CSSGGGGCCCSSHHHHHHHTTTTT-C---TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred eccchhhcCCCcHHHHHHHHHHhc-C---CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9996 4567789999999854321 1 1112245678999999999 899999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|+++..|+++++.
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999 99999999999999997653 37998877653 3 478899999999888764
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-52 Score=346.62 Aligned_cols=207 Identities=19% Similarity=0.193 Sum_probs=169.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCEeCCccc---c-cceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNL---M-VKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~~~~~~~---~-~~~i~~ 74 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+ +.| ++|+|.++|+++.... . +..++|
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~~~~~~~~~~~~~~i~~ 84 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDERARKGLFL 84 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred EEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEECCCCCHHHHHhCcEEE
Confidence 36899999988899999999999999999999999999999999998 677 6999999999985421 1 345899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCC-ccccCCCCCC-CChHHHHHHHHHHHHhhCCCe
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNV-LSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~-LSgGqrqRv~lA~al~~~p~l 152 (212)
+||++.+++.+|++||+.++............+..+++.++++.+|+ .+..++++.+ |||||||||+|||||+.+|++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l 164 (250)
T 2d2e_A 85 AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY 164 (250)
T ss_dssp CCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE
T ss_pred eccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999886532111111233445678899999999 5788999999 999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH--H--HHHHhcCeeecCCchh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV--D--ALLKELGLLKCRPADE 208 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~--~--~~l~~g~~~~~~~~~~ 208 (212)
|||||||+ ||+.++..++++|+++++++ .|||++.+... + .+|++|++++.|+++.
T Consensus 165 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 165 AVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999 99999999999999986543 37998877653 3 3688999999998773
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-52 Score=350.15 Aligned_cols=208 Identities=19% Similarity=0.194 Sum_probs=171.1
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
++++++.|++ +.+|++|||+|++|++++|+||||||||||+|+|+|++.| ++|+|.++|.++... .+++.++|
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~ 97 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLDGEPLVQYDHHYLHTQVAA 97 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEcccCCHHHHhccEEE
Confidence 4689999976 6799999999999999999999999999999999999999 699999999988532 24567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhhCCC
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTIIVQS 151 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ 151 (212)
|||++.+++ .||+||+.++...... ...........+.++++.+ |+.+..++++.+|||||||||+|||||+.+|+
T Consensus 98 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 176 (271)
T 2ixe_A 98 VGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPR 176 (271)
T ss_dssp ECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCS
T ss_pred EecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 999998887 5999999875321100 0000011223356778888 78888899999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..++++|++++.+ . ++|+++.+..++ .+|++|++++.|+++++.
T Consensus 177 lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999 9999999999999998643 2 379998875433 478899999999988874
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.1e-51 Score=339.08 Aligned_cols=198 Identities=18% Similarity=0.234 Sum_probs=169.7
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
++++++.|+ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|. +++.++|+||++
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~----------~~~~i~~v~q~~ 75 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIE----------VYQSIGFVPQFF 75 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-SEEEEE----------ECSCEEEECSCC
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEE----------EeccEEEEcCCC
Confidence 368999998 88899999999999999999999999999999999999999 699998 235699999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 80 LTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.+++.+||+||+.++...... .........+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999899999999885422100 0011233456788999999999999999999999999999999999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+ ||+.++..++++|++++++ + .+||++.+... + .+|++|+ ++.|+++++.
T Consensus 156 ts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99 9999999999999999765 3 37999988654 3 4678999 8889888763
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-52 Score=350.67 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=172.9
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--c---ccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--K---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~---~~~~~~i~~v 75 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++. . ..+++.++|+
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~i~~v 102 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFGKMPGKVGYSAETVRQHIGFV 102 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTBCCC---CCHHHHHTTEEEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEECCEEcccccCCHHHHcCcEEEE
Confidence 46899999988899999999999999999999999999999999999999 6999999999875 2 2345679999
Q ss_pred cCCCCCC--CCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 76 PQHDLTV--DTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 76 ~Q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
||++.++ +.+||+||+.++.... ........+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++
T Consensus 103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 182 (279)
T 2ihy_A 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV 182 (279)
T ss_dssp CHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred EcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 9987543 3569999998742110 000111223456788999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CChhhHHHHHHHHHHHHhhc--C-----cchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 153 FVPQHDLT-VDTLTVHEHMTLMARLKMDR--N-----LHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 153 lilDEPt~-lD~~~~~~~~~~l~~l~~~~--~-----~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||||||+ ||+.+++.++++|+++++++ . |||++.+... + .+|++|++++.|+++++.
T Consensus 183 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999 99999999999999997542 2 6998877543 2 478899999999888764
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-52 Score=352.65 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=166.6
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~ 76 (212)
++++++.|+ +..+|+||||+|++|+++||+||||||||||+++|+|++.| ++|+|.++|.++... .+++.++|||
T Consensus 56 ~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~G~~i~~~~~~~~r~~i~~v~ 134 (306)
T 3nh6_A 56 FENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRIDGQDISQVTQASLRSHIGVVP 134 (306)
T ss_dssp EEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEECCEEcccCCHHHHhcceEEEe
Confidence 368899995 57799999999999999999999999999999999999999 699999999998643 3567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHc-----------CCccccCCCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL-----------GLLKCKNSVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqrqRv~lA~a 145 (212)
|++.+|+ .||+||+.++.... .. ..+.++++.+ |+.....+++.+|||||||||+||||
T Consensus 135 Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 135 QDTVLFN-DTIADNIRYGRVTA-----GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp SSCCCCS-EEHHHHHHTTSTTC-----CH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred cCCccCc-ccHHHHHHhhcccC-----CH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 9998885 59999998753211 11 1233333333 44555667778999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.+...+++.|.++.... ++|+++.+..++ .+|++|++++.|+++++.
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999 99999999999999987643 379999887654 478899999999999874
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-51 Score=329.88 Aligned_cols=180 Identities=21% Similarity=0.310 Sum_probs=159.3
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
++++++.|++ .+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++. ..++.++|+||++.
T Consensus 13 ~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~~~~--~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 13 IRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT--KVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEETTEEGG--GGGGGEEEECSSCC
T ss_pred EEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEhh--hhcCcEEEEeCCCc
Confidence 4689999988 999999999999999999999999999999999999998 6999999999885 35677999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+++.+||+||+.++...+.. . .+ .+++.++++.+|+.+. ++++.+||||||||++|||||+.+|++|||||||+
T Consensus 89 ~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99999999999987543221 1 11 4567889999999988 99999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
||+.++..++++|++++++. .+|+++.+..
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999999999987543 3799887654
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.4e-51 Score=341.33 Aligned_cols=209 Identities=17% Similarity=0.166 Sum_probs=174.2
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCceEEEECCEeCCcc---cc-cceEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVDGQILLNGLEVEKN---LM-VKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~G~I~~~g~~~~~~---~~-~~~i~~ 74 (212)
++++++.|+++.+|+||||+|++|++++|+||||||||||+|+|+|++ .| ++|+|.++|+++... .. ++.++|
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~ 101 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPEDRAGEGIFM 101 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE-EEEEEEETTEEGGGSCHHHHHHHTEEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCeEEEECCEECCcCCHHHHhhCCEEE
Confidence 468999999889999999999999999999999999999999999984 56 699999999988532 12 235899
Q ss_pred EcCCCCCCCCCCHHHHHHHHHh-hh---cccCCCHHHHHHHHHHHHHHcCCc-cccCCCCC-CCChHHHHHHHHHHHHhh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMAR-LK---MDRNLHHVERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQTII 148 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~-~LSgGqrqRv~lA~al~~ 148 (212)
+||++.+++.+|+.+|+.+... .. .....+..+..+++.++++.+|+. ...++++. +|||||||||+|||||+.
T Consensus 102 v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~ 181 (267)
T 2zu0_C 102 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 181 (267)
T ss_dssp ECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHH
T ss_pred EccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987542 11 111123344456788999999996 57888887 599999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHH--HH--HHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERART--VD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~--~~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|++|||||||+ ||+.++..++++|++++++. .|||++.+.. ++ .+|++|++++.|+++++.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999 99999999999999986543 3799887754 23 468899999999988763
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-51 Score=340.36 Aligned_cols=199 Identities=19% Similarity=0.272 Sum_probs=165.2
Q ss_pred Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
+++++++| +++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++... .+++.++|+
T Consensus 10 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~i~~v 88 (247)
T 2ff7_A 10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALADPNWLRRQVGVV 88 (247)
T ss_dssp EEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence 46899999 467899999999999999999999999999999999999999 699999999998542 245679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcccc-----------CCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-----------NSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+++ .||+||+.++.. ... ..++.++++.+++.+.. ++++.+|||||||||+|||
T Consensus 89 ~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 89 LQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp CSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred eCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 99998886 599999987421 111 23455666777665443 4556899999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+.+|++|||||||+ ||+.++..++++|+++++.. .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999 99999999999999995422 379988765433 478899999999988874
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-50 Score=334.68 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=169.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~ 78 (212)
+++++. .+|+++||++++|++++|+||||||||||+|+|+|+++| + |+|.++|+++.. ..+++.++|+||+
T Consensus 8 ~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 81 (249)
T 2qi9_C 8 QDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-K-GSIQFAGQPLEAWSATKLALHRAYLSQQ 81 (249)
T ss_dssp EEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-E-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred EceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-C-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence 456665 689999999999999999999999999999999999998 7 999999998743 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC-------
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS------- 151 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~------- 151 (212)
+.+++.+||+||+.++.. . ... .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 82 ~~~~~~~tv~e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp CCCCTTCBHHHHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred CccCCCCcHHHHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 999999999999987421 1 111 4567899999999999999999999999999999999999999
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH-H--HHHHhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV-D--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~-~--~~l~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..++++|+++++++ .+||++.+... + .+|++|++++.|+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 99999999999999997653 37999988654 3 468899999999888774
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-51 Score=336.87 Aligned_cols=200 Identities=19% Similarity=0.220 Sum_probs=167.8
Q ss_pred Cccccccc-CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLF-GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.| +++.+|++|||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|+|
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 46899999 677899999999999999999999999999999999999998 69999999999853 23466799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC-----------CCCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqrqRv~lA~a 145 (212)
|++.+++ .||+||+.++.. .... ...+.++++.+++.+..+ +++.+|||||||||+||||
T Consensus 83 q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 83 QDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp CSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred CCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 9998887 599999987421 1111 234677888888876554 4467999999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|+.+|++|||||||+ ||+.++..++++|+++++.. .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999 99999999999999987322 379998775433 368899999999988874
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-50 Score=335.16 Aligned_cols=199 Identities=23% Similarity=0.210 Sum_probs=171.2
Q ss_pred CcccccccCC----cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-EE
Q psy8250 1 METFHPLFGD----TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-FV 75 (212)
Q Consensus 1 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~v 75 (212)
++++++.|++ +.+|+++||+++ |++++|+||||||||||+|+|+|++ | ++|+|.++|.++.....++.++ |+
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhhheEEEe
Confidence 4689999987 789999999999 9999999999999999999999999 9 6999999999874321255799 99
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
||++.+ .+|++||+.++...+ .. ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 81 ~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 81 PEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp GGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999877 789999999865432 11 134678899999998 89999999999999999999999999999999
Q ss_pred ecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHH-HH---HHHHhcCeeecCCchhhhc
Q psy8250 155 PQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERART-VD---ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 155 lDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~-~~---~~l~~g~~~~~~~~~~~~~ 211 (212)
|||||+ ||+.++..++++|+++++. ..|||++.+.. ++ .+|++|++++.|+++++.+
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999 9999999999999988641 13799887654 34 3688999999999988753
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-50 Score=350.60 Aligned_cols=198 Identities=18% Similarity=0.246 Sum_probs=169.9
Q ss_pred Cccccccc--CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLF--GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
+++++++| ++..+|++|||+|++||+++|+||||||||||||+|+|++. ++|+|+++|+++... .+++.++||
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 46899999 66789999999999999999999999999999999999885 499999999998643 245779999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCC-----------CChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------LSgGqrqRv~lA~ 144 (212)
||++.+|+ +||+||+.+.. .. ..+++.++++.+++.+..++++.+ |||||||||+|||
T Consensus 100 ~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 100 PQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp SCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred cCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 99999887 59999986421 11 134577899999999999999988 9999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|++|||||||+ ||+..+.++.+.|+++.... ++||++.+..++ .+|++|+++..|+++++++
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999998865432 279876554333 4789999999999999865
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.4e-49 Score=329.05 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=163.1
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
++++++.|++ +.+|++|||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++... .+++.++|
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHhccEEE
Confidence 4689999976 4699999999999999999999999999999999999864 79999999988532 34567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHH
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA 143 (212)
+||++.+++ .||+||+.++.. ... .+.+.++++.+++.+. .++++.+|||||||||+||
T Consensus 98 v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 98 VPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp ECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 999998886 599999987421 111 2345566777776442 3467889999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+.+|++|||||||+ ||+.++..++++|+++++.. .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999 99999999999999986532 379988765433 478899999999988874
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.4e-49 Score=320.10 Aligned_cols=189 Identities=24% Similarity=0.307 Sum_probs=152.7
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~ 78 (212)
++++++.|+ ++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++| .++|+||+
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g----------~i~~v~q~ 77 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG----------RISFCSQF 77 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEECS----------CEEEECSS
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CccEEEECC----------EEEEEecC
Confidence 368999994 57899999999999999999999999999999999999999 699999998 38999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHh
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
+.+++. ||+||+.++.. ... ....++++.+++.+. .++++.+||||||||++|||||+
T Consensus 78 ~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 78 SWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp CCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 988875 99999987421 111 112334444444322 33456899999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHH-HHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTL-MARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~-l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|++|||||||+ ||+.++..+++. +.+++... .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 999999999996 45554322 379998775433 3688999999999988753
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=319.57 Aligned_cols=194 Identities=20% Similarity=0.276 Sum_probs=152.7
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~ 78 (212)
++++++.|+ ++.+|++|||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++| .++|+||+
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g----------~i~~v~Q~ 74 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVAIKG----------SVAYVPQQ 74 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-EEEEEEECS----------CEEEECSS
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECC----------EEEEEcCC
Confidence 468999997 57899999999999999999999999999999999999998 699999998 28999999
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCCCCChHHHHHHHHHHHHhhCCCeE
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----KCKNSVLNVLSGGERKRVALAVQTIIVQSGF 153 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll 153 (212)
+.+ +.+||+||+.++.... ...........++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 75 ~~~-~~~tv~enl~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 75 AWI-QNDSLRENILFGCQLE----EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp CCC-CSEEHHHHHHTTSCCC----TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CcC-CCcCHHHHhhCccccC----HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 865 5789999998743211 01111111111123334332 2357889999999999999999999999999
Q ss_pred EecCCCC-CChhhHHHHHHHHH---HHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 154 VPQHDLT-VDTLTVHEHMTLMA---RLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 154 ilDEPt~-lD~~~~~~~~~~l~---~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||||||+ ||+.++..+++.|. +++... .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999 99999999999984 343221 379987764333 468899999999988874
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.4e-47 Score=347.64 Aligned_cols=201 Identities=17% Similarity=0.230 Sum_probs=167.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ..+++.++||
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-DSGSICLDGHDVRDYKLTNLRRHFALV 422 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEhhhCCHHHHhcCeEEE
Confidence 3689999974 6799999999999999999999999999999999999999 69999999999853 2456789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+. |++||+.++.. .... .+++.++++.+++.+. .+++..+||||||||++|||
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 423 SQNVHLFND-TIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred cCCCccccc-cHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999998875 99999987531 1111 2345666777766544 34456899999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|+++||||||+ ||+.+++.+.+.|+++.+.. .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999999986532 379998876544 4788999999999998753
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5e-48 Score=353.44 Aligned_cols=204 Identities=19% Similarity=0.222 Sum_probs=166.7
Q ss_pred CcccccccC--CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFG--DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
+++++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .+++.++||
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v 422 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-ERGRVEVDELDVRTVKLKDLRGHISAV 422 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-SEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEECCEEcccCCHHHHHhheEEE
Confidence 368899994 46799999999999999999999999999999999999999 699999999998542 356789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
||++.+|+. |++||+.++... ....+..+ .+.+.++.+ |++...++++.+||||||||++|||||+.
T Consensus 423 ~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 423 PQETVLFSG-TIKENLKWGRED-----ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp CSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred CCCCcCcCc-cHHHHHhccCCC-----CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 999998875 999999874321 11111111 122333333 55666788889999999999999999999
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
+|+++||||||+ ||+.+.+.+.+.|+++.+.. .+|+++.+..++ .+|++|+++++|+++|+.+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999 99999999999999885432 379999876544 4788999999999998753
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.4e-47 Score=346.22 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=166.7
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~ 74 (212)
+++++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... .+++.++|
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~ 422 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP-ASGTISLDGHDIRQLNPVWLRSKIGT 422 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC-SEEEEEETTEETTTBCHHHHHHSEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCEEhhhCCHHHHHhceEE
Confidence 3688999974 3699999999999999999999999999999999999999 699999999998542 35678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHH
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA 143 (212)
|||++.+++. |++||+.++.... ... ..+++.++++.+++.+. ..+++.+||||||||++||
T Consensus 423 v~Q~~~l~~~-tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 423 VSQEPILFSC-SIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp ECSSCCCCSS-BHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred EccCCcccCC-CHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 9999998875 9999998753210 011 13456777888876543 2334589999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
|||+++|+++||||||+ ||+.+++.+.+.|+++.+.. .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 496 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999 99999999999999987643 379998876544 378899999999998874
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.3e-48 Score=352.24 Aligned_cols=200 Identities=20% Similarity=0.247 Sum_probs=165.7
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
+++++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++.. ..+++.++||
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~r~~i~~v 420 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDFLTGSLRNQIGLV 420 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-SEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHhhheEEE
Confidence 3688999964 5799999999999999999999999999999999999999 69999999999854 2356789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-----------cccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----------KCKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+. |++||+.++.. ... .+.+.++++..++. ...+++..+||||||||++|||
T Consensus 421 ~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAr 490 (578)
T 4a82_A 421 QQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 490 (578)
T ss_dssp CSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred eCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 999998876 99999987421 111 12344555555443 3345556789999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|+++||||||+ ||+.+.+.+.+.++++.+.. .+|+++.+..++ .+|++|++++.|+++|+.+
T Consensus 491 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 491 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999999886543 379998876544 4788999999999998753
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-47 Score=348.23 Aligned_cols=200 Identities=17% Similarity=0.236 Sum_probs=166.6
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
++++++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .+++.++||
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-DEGHILMDGHDLREYTLASLRNQVALV 422 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-SEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-CCCeEEECCEEccccCHHHHHhhCeEE
Confidence 3688999973 6799999999999999999999999999999999999999 699999999998542 356779999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+. |++||+.++.. .... .+++.++++.+++.+ ..++++.+||||||||++|||
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 423 SQNVHLFND-TVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp CSSCCCCSS-BHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred ccCCcCCCC-CHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999998875 99999987531 1112 234556666666543 345566899999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
||+++|+++||||||+ ||+.+++.+.+.|+++.+.. .+|+++.+..++ .+|++|++++.|+++++.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999 99999999999999987532 379988765444 478899999999999874
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-47 Score=347.07 Aligned_cols=200 Identities=20% Similarity=0.250 Sum_probs=165.4
Q ss_pred CcccccccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEc
Q psy8250 1 METFHPLFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVP 76 (212)
Q Consensus 1 ~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~ 76 (212)
++++++.|++ ..+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.++|||
T Consensus 357 ~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-DRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-CCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 3688999964 5799999999999999999999999999999999999999 69999999999854 24567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCC-----------CCCCCChHHHHHHHHHHH
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-----------VLNVLSGGERKRVALAVQ 145 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqrqRv~lA~a 145 (212)
|++.+|+. |++||+.++... .. .+.+.++++.+++.+..++ ...+||||||||++||||
T Consensus 436 Q~~~lf~~-tv~eni~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 436 QDTILFST-TVKENLKYGNPG-----AT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp TTCCCCSS-BHHHHHHSSSTT-----CC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCccccc-cHHHHHhcCCCC-----CC----HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 99988865 999999874211 11 1234455555555443333 347899999999999999
Q ss_pred HhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 146 TIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 146 l~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
|+.+|++|||||||+ ||+.+...+.+.|+++.+.. .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999 99999999999999986533 379999886654 3788999999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.9e-45 Score=309.77 Aligned_cols=184 Identities=24% Similarity=0.301 Sum_probs=141.7
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++. ++.+|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++| .++|+||++.+
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g----------~i~~v~Q~~~l 110 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSG----------RISFCSQNSWI 110 (290)
T ss_dssp --------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-EEEEEECCS----------CEEEECSSCCC
T ss_pred EEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECC----------EEEEEeCCCcc
Confidence 566764 46799999999999999999999999999999999999998 699999998 38999999988
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccc-----------cCCCCCCCChHHHHHHHHHHHHhhCC
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQTIIVQ 150 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqrqRv~lA~al~~~p 150 (212)
++. ||+||+. +.. ... ..+.++++.+++.+. .++++.+||||||||++|||||+.+|
T Consensus 111 ~~~-tv~enl~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 111 MPG-TIKENII-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp CSS-BHHHHHH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred Ccc-cHHHHhh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 875 9999997 321 111 112334445555332 23446899999999999999999999
Q ss_pred CeEEecCCCC-CChhhHHHHHHHH-HHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLM-ARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELN 210 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l-~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~ 210 (212)
++|||||||+ ||+.++..+++++ .+++... .+|+++.+..++ .+|++|+++..|+++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999 9999999999964 4554322 379998775433 368899999999988874
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.5e-44 Score=348.42 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=166.6
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
+++++++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. ..+++.+||
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-LDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEHHhCCHHHHHhheEE
Confidence 3688999964 3699999999999999999999999999999999999999 69999999999854 345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHH-----HHHHHHHHc--CCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
|+|+|.+|+. |++||+.++... ....+..+ .+.+.++.+ |++.....+..+||||||||++|||||+
T Consensus 469 v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 469 VSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp ECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred EcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 9999998876 999999986321 11111111 123344444 3444556677899999999999999999
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
.+|++|||||||+ ||+.+.+.+.+.++++.+.. .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 99999999999998876543 379999886654 4789999999999998743
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.1e-45 Score=356.36 Aligned_cols=201 Identities=19% Similarity=0.268 Sum_probs=168.0
Q ss_pred cccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEE
Q psy8250 2 ETFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFV 75 (212)
Q Consensus 2 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v 75 (212)
++++++|.+ .++|+||||+|++||.+||+||||||||||+++|.|++.| ++|+|.+||.++.. ..+|++++||
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 688999953 3699999999999999999999999999999999999999 69999999999965 3578899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||+|.+|+. |++||+.++..- ... ..+.+.++++..++.+ .......+||||||||++|||
T Consensus 1159 ~Qdp~LF~g-TIreNI~~gld~---~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1159 SQEPTLFDC-SIAENIIYGLDP---SSV----TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp CSSCCCCSE-EHHHHHSSSSCT---TTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred CCCCEeeCc-cHHHHHhccCCC---CCC----CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 999999887 999999875321 111 2344566666666543 233344679999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+++|+||||||||| ||+.+.+.+.+.|+++.+.. .+|.++.+..+| .+|++|++++.|+++|+-+
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999998875543 269988887765 4899999999999999854
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-43 Score=348.35 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=167.3
Q ss_pred CcccccccC---CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEE
Q psy8250 1 METFHPLFG---DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGF 74 (212)
Q Consensus 1 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~ 74 (212)
+++++++|+ +.++|+|+||+|++|+.+||+||||||||||+++|.|++.| .+|+|.+||.++.. ..++++++|
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~idG~~i~~~~~~~lr~~i~~ 496 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLRKNVAV 496 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCCCccchhccHHHHhhcccc
Confidence 368899995 35799999999999999999999999999999999999999 69999999999865 346788999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC-----------CccccCCCCCCCChHHHHHHHHH
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-----------LLKCKNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqrqRv~lA 143 (212)
|+|+|.+|+. |++||+.|+.. ... .+++.++++..+ .+.........||||||||++||
T Consensus 497 v~Q~~~Lf~~-TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 497 VSQEPALFNC-TIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp ECSSCCCCSE-EHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred cCCcceeeCC-chhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence 9999998876 99999998632 112 223444444443 44445566678999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||++.+|+++||||||| ||+.+.+.+.+.|.++.+.. .+|++..+..++ .+|++|++++.|+.+|+.+
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999 99999999999999987654 379998877665 4789999999999999854
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-42 Score=313.55 Aligned_cols=190 Identities=21% Similarity=0.228 Sum_probs=160.6
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++.|++. .|+++||++.+||++||+||||||||||+|+|+|++.| ++|+|.+ ...++|+||++..
T Consensus 361 ~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~----------~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 361 PRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEW----------DLTVAYKPQYIKA 428 (607)
T ss_dssp CCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBSCCCC----------CCCEEEECSSCCC
T ss_pred eceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE----------eeEEEEEecCccC
Confidence 5788888774 68999999999999999999999999999999999999 6999976 1358999999888
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
++.+||.+++........ .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 429 ~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 429 EYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp CCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred CCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccC
Confidence 788999998876411110 113467889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250 161 VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN 210 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~ 210 (212)
||+.++..++++|++++.+ . ++||++++... + .+|++ |++.+.|+++++.
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 9999999999999998643 2 37999998764 3 35654 6777889988764
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-41 Score=308.44 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=159.5
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++| ++|+|.+ ...++|+||++..
T Consensus 291 ~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~----------~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 291 PRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKIEW----------DLTVAYKPQYIKA 358 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBCCCCC----------CCCEEEECSSCCC
T ss_pred eeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEE----------CceEEEEecCCcC
Confidence 5778888764 68999999999999999999999999999999999998 6999986 1358999999887
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
++.+||.+++........ ...+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 359 ~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 359 DYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp CCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred CCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 788999988765311110 013457789999999988999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250 161 VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN 210 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~ 210 (212)
||+.++..++++|++++++ . ++||++++... + .+|++ |++.+.|+++++.
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 9999999999999998643 2 37999998764 3 35654 6777889988764
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-42 Score=340.78 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=162.6
Q ss_pred cccccccCCc---ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEE
Q psy8250 2 ETFHPLFGDT---NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFV 75 (212)
Q Consensus 2 ~~l~~~~~~~---~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v 75 (212)
+++++.|++. .+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... .+++.++||
T Consensus 1034 ~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-SEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEcccCCHHHHHhceEEE
Confidence 5788999643 699999999999999999999999999999999999999 699999999998642 456789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-----------ccCCCCCCCChHHHHHHHHHH
Q psy8250 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqrqRv~lA~ 144 (212)
||++.+|+ .|++||+.++.... .... ..+.++++..++.+ .......+||||||||++|||
T Consensus 1113 ~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1113 SQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp ESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred CCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 99998775 59999998743211 1111 22334444444433 233445689999999999999
Q ss_pred HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHHH--HHHHhcCeeecCCchhhhc
Q psy8250 145 QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTVD--ALLKELGLLKCRPADELNR 211 (212)
Q Consensus 145 al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~~~ 211 (212)
||+.+|++|||||||+ ||+.+.+.+.+.|+++.... .+|+++.+..++ .+|++|++++.|+++++.+
T Consensus 1185 al~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999 99999999999998865432 379999876554 4788999999999998754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.8e-41 Score=303.52 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=147.8
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.+++. .++|++|+...
T Consensus 273 ~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~---------~i~~~~q~~~~ 341 (538)
T 3ozx_A 273 TKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA-DEGSVTPEKQ---------ILSYKPQRIFP 341 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-SBCCEESSCC---------CEEEECSSCCC
T ss_pred cceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCe---------eeEeechhccc
Confidence 5677888774 57888999999999999999999999999999999999 6999997653 37999999877
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
.+.+||.+|+.+..... .. .....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 342 ~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~g 415 (538)
T 3ozx_A 342 NYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSY 415 (538)
T ss_dssp CCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred ccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 77889999988632111 00 112356788999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250 161 VDTLTVHEHMTLMARLKMDR------NLHHVERARTV 191 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~ 191 (212)
||+.++..++++|++++++. ++||++++...
T Consensus 416 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~ 452 (538)
T 3ozx_A 416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 99999999999999997642 37999998764
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=295.95 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=155.7
Q ss_pred ccccccCC-cceeeeeEEEEcCC-----cEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEc
Q psy8250 3 TFHPLFGD-TNYKESLSGIAESG-----SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76 (212)
Q Consensus 3 ~l~~~~~~-~~~l~~vs~~i~~G-----e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~ 76 (212)
++++.|++ ..+++++||++.+| |++||+||||||||||+++|+|++.| ++|+. + ....++|+|
T Consensus 351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-~~G~~------~----~~~~i~~~~ 419 (608)
T 3j16_B 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQD------I----PKLNVSMKP 419 (608)
T ss_dssp SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-SBCCC------C----CSCCEEEEC
T ss_pred ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-CCCcC------c----cCCcEEEec
Confidence 45666755 45889999999998 78999999999999999999999999 68862 1 123589999
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 77 Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
|+.......||.+++.... .. ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 420 q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 420 QKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp SSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred ccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9977766779999875321 11 111 1245678999999999999999999999999999999999999999999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh-c-----CcchHHHHHHH-H--HHHHh--cCeeecCCchhhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD-R-----NLHHVERARTV-D--ALLKE--LGLLKCRPADELN 210 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~-~-----~~h~~~~~~~~-~--~~l~~--g~~~~~~~~~~~~ 210 (212)
|||+ ||+.++..++++|+++..+ + ++||++++... + .+|++ |++++.|+|+++.
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 9999 9999999999999998643 2 37999998764 3 35664 8899999998874
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-39 Score=295.23 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=144.2
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE---------EECCEeCCcc-----
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI---------LLNGLEVEKN----- 66 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I---------~~~g~~~~~~----- 66 (212)
++++++|++. .++++|| +|++||++||+||||||||||+|+|+|++.| ++|++ .++|.++...
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5899999876 4899999 9999999999999999999999999999998 69985 3566544210
Q ss_pred cccceEEEEcCCCCCCCC---CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHH
Q psy8250 67 LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 67 ~~~~~i~~v~Q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA 143 (212)
.....+++++|....++. .|+.+++... . ...++.++++.+|+....++++.+|||||||||+||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~--------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA 170 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----D--------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA 170 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----C--------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhh----h--------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence 112357899987543321 3888877531 0 123467899999999999999999999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
|||+.+|++|||||||+ ||+.++..++++|++++++. ++||++++...
T Consensus 171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~ 224 (538)
T 1yqt_A 171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL 224 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 99999999999999999 99999999999999997653 27999988664
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-39 Score=300.84 Aligned_cols=199 Identities=17% Similarity=0.179 Sum_probs=130.1
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHH---------------------HHHHcCCCCCC-------ceEEEECCE
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLL---------------------ACISQRIQGDV-------DGQILLNGL 61 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl---------------------~~i~g~~~p~~-------~G~I~~~g~ 61 (212)
...+|+||||+|++||++||+||||||||||+ +++.|+..| + .|.|.+++.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~-~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKP-DVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------C-CCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccC-CccceeccccceEecCc
Confidence 45689999999999999999999999999998 888888887 4 455566665
Q ss_pred eCCcccccceEEEEcCCCC-------------------CCCCCCHHHHHHHHHhhhcccCCCHHHH------HHHHHHHH
Q psy8250 62 EVEKNLMVKVSGFVPQHDL-------------------TVDTLTVHEHMTLMARLKMDRNLHHVER------ARTVDALL 116 (212)
Q Consensus 62 ~~~~~~~~~~i~~v~Q~~~-------------------~~~~ltv~e~l~~~~~~~~~~~~~~~~~------~~~~~~~l 116 (212)
+.... .++.+++++|.+. .++.+||+||+.+........ ...... .....+++
T Consensus 109 ~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 109 TTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp C------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHH
T ss_pred hhhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHH
Confidence 44221 2233455554332 346789999998743221100 000000 01122468
Q ss_pred HHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHH
Q psy8250 117 KELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVER 187 (212)
Q Consensus 117 ~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~ 187 (212)
+.+|+.+. .++++.+|||||||||+|||||+.+|+ +|||||||+ ||+.++..++++|+++++++ ++||++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 89999765 689999999999999999999999998 999999999 99999999999999998654 3799987
Q ss_pred HHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250 188 ARTVDA--LL------KELGLLKCRPADELNR 211 (212)
Q Consensus 188 ~~~~~~--~l------~~g~~~~~~~~~~~~~ 211 (212)
+..++. +| ++|+++++|+++++.+
T Consensus 267 ~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 267 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 655443 44 8999999999998753
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-39 Score=297.64 Aligned_cols=176 Identities=21% Similarity=0.206 Sum_probs=144.3
Q ss_pred cccccccCCc-ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE---------EECCEeCCcc-----
Q psy8250 2 ETFHPLFGDT-NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI---------LLNGLEVEKN----- 66 (212)
Q Consensus 2 ~~l~~~~~~~-~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I---------~~~g~~~~~~----- 66 (212)
++++++|++. .+|+++| ++++||++||+||||||||||+|+|+|++.| ++|++ .++|.++...
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCCEehhhhhhhhh
Confidence 6889999876 4999999 9999999999999999999999999999999 69985 4566554221
Q ss_pred cccceEEEEcCCCCCCC---CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHH
Q psy8250 67 LMVKVSGFVPQHDLTVD---TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143 (212)
Q Consensus 67 ~~~~~i~~v~Q~~~~~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA 143 (212)
..+..+++++|....++ ..|+.|++.. . . ...++.++++.+|+.+..++++.+|||||||||+||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~--~------~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V--D------EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T--C------CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhh----h--H------HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence 11234788888743322 2389998753 1 0 123467899999999999999999999999999999
Q ss_pred HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 144 VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 144 ~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
|||+.+|++|||||||+ ||+.++..++++|+++++++ ++||++.+...
T Consensus 241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhh
Confidence 99999999999999999 99999999999999997653 27999987654
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.6e-37 Score=294.69 Aligned_cols=184 Identities=19% Similarity=0.199 Sum_probs=151.0
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC-CC
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LT 81 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~-~~ 81 (212)
++++.|+++.+|+++||+|++|++++|+||||||||||+|+|+| |+| +|.+... ...++|++|++ .+
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGT 507 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCC
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEccccccc
Confidence 68899999999999999999999999999999999999999995 222 3333211 12368999875 67
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
++.+|+.+|+.+ .. .+. ..++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||+
T Consensus 508 ~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 508 HSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp CTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred ccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 888999999975 11 111 45678999999995 67899999999999999999999999999999999999
Q ss_pred -CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH-H--HHHHhcCee-ecCCchhhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDR----NLHHVERARTV-D--ALLKELGLL-KCRPADELN 210 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~-~--~~l~~g~~~-~~~~~~~~~ 210 (212)
||+.++..++++|++ ... .+||++++... + .+|++|+++ +.|+++++.
T Consensus 578 ~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999988 221 37999988765 2 367899986 688887763
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-38 Score=299.35 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=148.4
Q ss_pred CcccccccCC--cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCC
Q psy8250 1 METFHPLFGD--TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~ 78 (212)
++++++.|++ +.+|+|+||++++|+++||+||||||||||+|+|+|++.| ++|+|+++|. ..++|++|+
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-~sG~I~~~~~--------~~I~yv~Q~ 744 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-TSGEVYTHEN--------CRIAYIKQH 744 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-SEEEEEECTT--------CCEEEECHH
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEEcCc--------cceEeeccc
Confidence 4688999965 5799999999999999999999999999999999999999 6999999863 136788776
Q ss_pred CCC----CCCCCHHHHHHHHHhhh--------------------------------------------------------
Q psy8250 79 DLT----VDTLTVHEHMTLMARLK-------------------------------------------------------- 98 (212)
Q Consensus 79 ~~~----~~~ltv~e~l~~~~~~~-------------------------------------------------------- 98 (212)
+.. ....|+.+++.+.....
T Consensus 745 ~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ 824 (986)
T 2iw3_A 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824 (986)
T ss_dssp HHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence 421 12346666665421100
Q ss_pred --------cccC--------CC--------------------------HHHHHHHHHHHHHHcCCcc-c-cCCCCCCCCh
Q psy8250 99 --------MDRN--------LH--------------------------HVERARTVDALLKELGLLK-C-KNSVLNVLSG 134 (212)
Q Consensus 99 --------~~~~--------~~--------------------------~~~~~~~~~~~l~~~gl~~-~-~~~~~~~LSg 134 (212)
.... ++ ......++.++++.+|+.. . .++++.+|||
T Consensus 825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSG 904 (986)
T 2iw3_A 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSG 904 (986)
T ss_dssp ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCH
T ss_pred hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCH
Confidence 0000 00 0001346788999999975 3 5889999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh--cCcchHHHHHHH-H--HHHHhcCeeecCC
Q psy8250 135 GERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD--RNLHHVERARTV-D--ALLKELGLLKCRP 205 (212)
Q Consensus 135 GqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~--~~~h~~~~~~~~-~--~~l~~g~~~~~~~ 205 (212)
||||||+|||||+.+|++|||||||+ ||+.+...+.+.|+++... ..+||++++... + .+|++|+++..|+
T Consensus 905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999 9999999999998776211 137999988653 2 4678999987775
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-36 Score=281.92 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=141.8
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH----------------------cCCCCCCceEEEECCEeCCcccc
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS----------------------QRIQGDVDGQILLNGLEVEKNLM 68 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~----------------------g~~~p~~~G~I~~~g~~~~~~~~ 68 (212)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~--~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL--DKVIDIDQSPIGRTPR 412 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC--SEEEECCSSCSCSSTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc--CceeEeccccCCCCCC
Confidence 35799999999999999999999999999998754 33332 5688888877632100
Q ss_pred --------------------------------------------cceEEEEcCCCCCC----------------------
Q psy8250 69 --------------------------------------------VKVSGFVPQHDLTV---------------------- 82 (212)
Q Consensus 69 --------------------------------------------~~~i~~v~Q~~~~~---------------------- 82 (212)
....|+++|+..++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 00113333332222
Q ss_pred ----------CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC-
Q psy8250 83 ----------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ- 150 (212)
Q Consensus 83 ----------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p- 150 (212)
..+|+.||+.+.... ....++.+.++.+++.. ..++++.+|||||||||+|||||+.+|
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 247888988764321 12234567888999964 568899999999999999999999987
Q ss_pred --CeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 151 --SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 151 --~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
++|||||||+ ||+.++..++++|+++++++ ++||++.+..++ .+| ++|+++++|+++++.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 4999999999 99999999999999998654 379999875444 356 8999999999999854
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-35 Score=267.54 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=132.0
Q ss_pred ccccccCCcceeeeeEEEE-cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----------EECCEeCCcc----
Q psy8250 3 TFHPLFGDTNYKESLSGIA-ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----------LLNGLEVEKN---- 66 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i-~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----------~~~g~~~~~~---- 66 (212)
+.+.+||.+ .|+-..+.+ ++||++||+||||||||||+|+|+|++.| ++|+| .++|.++...
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 456677654 244445554 58999999999999999999999999999 69998 5677665221
Q ss_pred -cccceEEEEcCC----CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250 67 -LMVKVSGFVPQH----DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 67 -~~~~~i~~v~Q~----~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~ 141 (212)
.....+...+|. +.++ ..++.+++... ....++.++++.+++....++++.+|||||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFL-KGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLL 148 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH
T ss_pred hhcccchhhccchhhhhhhhc-cCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 011123333443 3333 23777754321 01234678899999999999999999999999999
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV 191 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~ 191 (212)
|||||+.+|++|||||||+ ||+.++..++++|+++++.. ++||++++..+
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~ 203 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYL 203 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhh
Confidence 9999999999999999999 99999999999999996522 27999988664
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=268.84 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=132.4
Q ss_pred cccccccCCcc-eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-----------EECCEeCCcc---
Q psy8250 2 ETFHPLFGDTN-YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-----------LLNGLEVEKN--- 66 (212)
Q Consensus 2 ~~l~~~~~~~~-~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-----------~~~g~~~~~~--- 66 (212)
++++++|+... .+++++ .+++|+++||+||||||||||||+|+|++.| ++|+| ++.|.++...
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC-CCceEecccchhhhhheecChhhhhhhhH
Confidence 46788897653 667666 5899999999999999999999999999999 69987 2333322110
Q ss_pred cccceE--EEEcCCCCC------CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH
Q psy8250 67 LMVKVS--GFVPQHDLT------VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138 (212)
Q Consensus 67 ~~~~~i--~~v~Q~~~~------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq 138 (212)
...+.+ .+.+|.... .+..++.+++... . . ....++.++++.+|+.+..++++.+|||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Q 228 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----M--E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQ 228 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----C--C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----h--h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHH
Confidence 011111 233332111 1112344433221 0 1 12356789999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHH
Q psy8250 139 RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTV 191 (212)
Q Consensus 139 Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~ 191 (212)
||+|||||+.+|++|||||||+ ||+.++..++++|++++.++ ++|+++++...
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~ 287 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL 287 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 9999999999999999999999 99999999999999997654 37999988764
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-37 Score=274.10 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=140.9
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-E-EEECCEeCCcccccceEEEEcCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-Q-ILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~-I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
+++++.|+ ++||++++|++++|+||||||||||+|+|+|++.| ++| + |+++|. .++.++|+||+.
T Consensus 122 ~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg~------~~~~i~~vpq~~ 188 (460)
T 2npi_A 122 YNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINLD------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEECC------TTSCSSSCSSCC
T ss_pred hhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcCC------ccCCeeeeccch
Confidence 35666664 79999999999999999999999999999999988 699 9 999982 356689999997
Q ss_pred C---CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH--HhhCCCe--
Q psy8250 80 L---TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ--TIIVQSG-- 152 (212)
Q Consensus 80 ~---~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a--l~~~p~l-- 152 (212)
. +++.+|+.+|+ ++..... +. ....++.++++.+|+.+..+ +.+|||||||||+|||| |+.+|++
T Consensus 189 ~l~~~~~~~tv~eni-~~~~~~~--~~---~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~ 260 (460)
T 2npi_A 189 SATPISDILDAQLPT-WGQSLTS--GA---TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRR 260 (460)
T ss_dssp EEEECCSCCCTTCTT-CSCBCBS--SC---CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hhcccccccchhhhh-ccccccc--Cc---chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCc
Confidence 4 34567898888 5432110 10 01223456788889987665 88999999999999999 9999999
Q ss_pred --EEecC-CCC-CChhhHHHHHHHHHHHHhhc--CcchHH------HHHHH-H-------HHHH-hcCeeecCCchhhh
Q psy8250 153 --FVPQH-DLT-VDTLTVHEHMTLMARLKMDR--NLHHVE------RARTV-D-------ALLK-ELGLLKCRPADELN 210 (212)
Q Consensus 153 --lilDE-Pt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~------~~~~~-~-------~~l~-~g~~~~~~~~~~~~ 210 (212)
||||| ||+ ||+. ...+.++++++.... ++|+.+ .+... + .+|+ +|+++ +|+++++.
T Consensus 261 sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 261 SGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp SCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred ceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99999 999 9999 666666666543221 257654 44332 2 3467 89998 89888764
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=3.4e-32 Score=257.65 Aligned_cols=192 Identities=18% Similarity=0.265 Sum_probs=142.7
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHH---------HHHHcCCCCC-----Cc------eEEEECCEeCCccc---
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLL---------ACISQRIQGD-----VD------GQILLNGLEVEKNL--- 67 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl---------~~i~g~~~p~-----~~------G~I~~~g~~~~~~~--- 67 (212)
...|+||||+|++|++++|+||||||||||+ +.+.+...+. .. +.+.++..++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3469999999999999999999999999997 4444433221 11 23455554431100
Q ss_pred -----------------------------------------ccceEEEEcCCCCCCC-----------------------
Q psy8250 68 -----------------------------------------MVKVSGFVPQHDLTVD----------------------- 83 (212)
Q Consensus 68 -----------------------------------------~~~~i~~v~Q~~~~~~----------------------- 83 (212)
..+..|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012366666655544
Q ss_pred ---------CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---
Q psy8250 84 ---------TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ--- 150 (212)
Q Consensus 84 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p--- 150 (212)
.+|+.|++.|.... ....++.++|+.+|+.. ..++++.+|||||||||+|||||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 36777777663221 12345678999999975 468899999999999999999999876
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDA--LL------KELGLLKCRPADELNR 211 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~--~l------~~g~~~~~~~~~~~~~ 211 (212)
++|||||||+ ||+.+++.++++|+++++++. +||++.+..++. +| ++|++++.|+++++.+
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 7999999999 999999999999999986542 799998765443 56 8999999999999864
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=7.5e-33 Score=261.37 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=143.4
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-cCC---------CCCC----ce------EEEECCEeCCccc----
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRI---------QGDV----DG------QILLNGLEVEKNL---- 67 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-g~~---------~p~~----~G------~I~~~g~~~~~~~---- 67 (212)
..|+||||+|++|+++||+|+||||||||+++|+ |.+ .+.. .| .|.+++.++....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999854 221 1110 13 4788887763110
Q ss_pred ------------------ccceEEEEcCCCCCCC----------------------------------------------
Q psy8250 68 ------------------MVKVSGFVPQHDLTVD---------------------------------------------- 83 (212)
Q Consensus 68 ------------------~~~~i~~v~Q~~~~~~---------------------------------------------- 83 (212)
..+.+||++|.+.+.+
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 0133577777543210
Q ss_pred --------CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---C
Q psy8250 84 --------TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---S 151 (212)
Q Consensus 84 --------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~ 151 (212)
.+|+.|++.|+.. . . ...++.++++.+|+.. ..++++.+|||||||||+||++|+.+| +
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~ 868 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCE
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCC
Confidence 3466676654221 1 1 1234568999999987 789999999999999999999999875 9
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
+|||||||+ ||+.++..++++|+++++++ .+||++.+..++ .+| ++|++++.|+++++.+
T Consensus 869 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999999 99999999999999998754 379999875333 367 6899999999998753
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.8e-32 Score=257.58 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=140.4
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHH-HHcCCC-------C-----------------CCce-------EEEECC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLAC-ISQRIQ-------G-----------------DVDG-------QILLNG 60 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~-i~g~~~-------p-----------------~~~G-------~I~~~g 60 (212)
.|+||||+|++|+++||+|+||||||||+++ |+|++. | ..+| .|.+++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 765431 1 0256 688898
Q ss_pred EeCCcccc-------------c---------ceEEEEcCC----------------------CCCC--------------
Q psy8250 61 LEVEKNLM-------------V---------KVSGFVPQH----------------------DLTV-------------- 82 (212)
Q Consensus 61 ~~~~~~~~-------------~---------~~i~~v~Q~----------------------~~~~-------------- 82 (212)
.++..... + +.+||.++. ..++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 87632110 0 111222211 1111
Q ss_pred ----------CCCCHHHHHHHHHh--hhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhC
Q psy8250 83 ----------DTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIV 149 (212)
Q Consensus 83 ----------~~ltv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~ 149 (212)
...++.|++.+... +...... ....++.++++.+|+.. ..++++.+|||||||||+||++|+.+
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~ 748 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS 748 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSC
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhC
Confidence 22345554432110 0000011 12346789999999987 46899999999999999999999996
Q ss_pred ---CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 150 ---QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 150 ---p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
|++|||||||+ ||+.++..++++|+++++++ .+||++++..++ .+| ++|++++.|+++++.+
T Consensus 749 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 749 GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp CSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999 99999999999999998764 279999884333 367 6899999999998753
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=3.7e-32 Score=257.35 Aligned_cols=190 Identities=19% Similarity=0.247 Sum_probs=139.5
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-c----CCCCC--CceE-------------EEECCEeCCccc----
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-Q----RIQGD--VDGQ-------------ILLNGLEVEKNL---- 67 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-g----~~~p~--~~G~-------------I~~~g~~~~~~~---- 67 (212)
..|+||||+|++|+++||+|+||||||||+++|+ | .+.+. ..|. |.+++.++....
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 3699999999999999999999999999999853 2 12110 1332 455555542100
Q ss_pred ------------------ccceEEEEcCCCCCC----------------------C------------------------
Q psy8250 68 ------------------MVKVSGFVPQHDLTV----------------------D------------------------ 83 (212)
Q Consensus 68 ------------------~~~~i~~v~Q~~~~~----------------------~------------------------ 83 (212)
..+.+||++|...+. +
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 013357777753221 1
Q ss_pred --------CCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhhCC---C
Q psy8250 84 --------TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTIIVQ---S 151 (212)
Q Consensus 84 --------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~~p---~ 151 (212)
.+|+.|++.|... . . ...++.++++.+|+.. ..++++.+|||||||||+||++|+.+| +
T Consensus 816 g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~ 886 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRT 886 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSE
T ss_pred CCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 2456666654221 1 1 1234568999999987 688999999999999999999999875 9
Q ss_pred eEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250 152 GFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD--ALL------KELGLLKCRPADELN 210 (212)
Q Consensus 152 llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~ 210 (212)
+|||||||+ ||+.++..++++|+++++++ .+||++.+..++ .+| ++|++++.|+++++.
T Consensus 887 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 999999999 99999999999999997654 379999875433 357 689999999999875
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=7e-31 Score=229.99 Aligned_cols=194 Identities=20% Similarity=0.179 Sum_probs=134.1
Q ss_pred cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-------------------------------------
Q psy8250 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG------------------------------------- 50 (212)
Q Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p------------------------------------- 50 (212)
+.+..++++++|++.+| +++|+|||||||||||++|.++..+
T Consensus 45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~ 123 (415)
T 4aby_A 45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSS 123 (415)
T ss_dssp EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEET
T ss_pred hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEec
Confidence 45667899999999999 9999999999999999999776641
Q ss_pred CCceEEEECCEeCCcc---cc-cceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc-------------------CCC---
Q psy8250 51 DVDGQILLNGLEVEKN---LM-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-------------------NLH--- 104 (212)
Q Consensus 51 ~~~G~I~~~g~~~~~~---~~-~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-------------------~~~--- 104 (212)
..+|+++++|++++.. .+ ...+++++|++.++.. +..+...|........ ...
T Consensus 124 ~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~ 202 (415)
T 4aby_A 124 AGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASE 202 (415)
T ss_dssp TSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1378999999998642 22 2348999998766543 4444443322111000 000
Q ss_pred -----------------------------------HHHHHHHHHHHHHHcCCccc-----------------------cC
Q psy8250 105 -----------------------------------HVERARTVDALLKELGLLKC-----------------------KN 126 (212)
Q Consensus 105 -----------------------------------~~~~~~~~~~~l~~~gl~~~-----------------------~~ 126 (212)
.......+.+.++.+++... ..
T Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 282 (415)
T 4aby_A 203 SSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFS 282 (415)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEE
Confidence 00011234445566655320 00
Q ss_pred -------CCCCC-CChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250 127 -------SVLNV-LSGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV 191 (212)
Q Consensus 127 -------~~~~~-LSgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~ 191 (212)
+++.. ||||||||++||++|+.+| ++|||||||+ ||+..+..+.++|+++++.. +||+.+.+..+
T Consensus 283 ~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~ 362 (415)
T 4aby_A 283 ANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARA 362 (415)
T ss_dssp SSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTC
T ss_pred cCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhc
Confidence 22223 6999999999999999999 9999999999 99999999999999997322 38998776433
Q ss_pred H--HHH----HhcCeeec
Q psy8250 192 D--ALL----KELGLLKC 203 (212)
Q Consensus 192 ~--~~l----~~g~~~~~ 203 (212)
+ .+| ++|+++..
T Consensus 363 d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp SEEEEEEEEEETTEEEEE
T ss_pred CeEEEEEEeccCCceEEE
Confidence 3 356 67776544
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=1.8e-33 Score=226.32 Aligned_cols=145 Identities=15% Similarity=0.222 Sum_probs=100.8
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC--cccccceEEEEcCCCCCCC
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--KNLMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~--~~~~~~~i~~v~Q~~~~~~ 83 (212)
+.|+++.+|++| ++|++++|+||||||||||+++|+|+ .| ++|+|.. .++. ....++.+||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~--~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSR--IILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeee--EEecCCchhhhcceEEecCCH----
Confidence 467888899996 89999999999999999999999999 88 6999843 2221 123456799999986
Q ss_pred CCCHHHHH-HHHH----hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 84 TLTVHEHM-TLMA----RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 84 ~ltv~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
.||+ .+.. .... .. ....+.++++. ++ |||||++|||||+.+|++||||||
T Consensus 76 ----~enl~~~~~~~~~~~~~--~~----~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 ----NEKIDPYLRPLHDALRD--MV----EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp --------CTTTHHHHHHHTT--TS----CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred ----HHHHHHHHHHHHHHHHH--hc----cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCC
Confidence 3444 2211 1110 00 11245556654 43 999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhc----CcchHHHHHH
Q psy8250 159 LTVDTLTVHEHMTLMARLKMDR----NLHHVERART 190 (212)
Q Consensus 159 t~lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~ 190 (212)
|+- ++..++++|+++ .+. .+||++.+..
T Consensus 132 ts~---~~~~l~~~l~~l-~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 132 QNT---TPAQMKMFLTRL-GFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGC---CHHHHHHHHTTB-CTTCEEEEEEC------
T ss_pred ccc---cHHHHHHHHHHh-cCCCEEEEECCHHHHhC
Confidence 999 888999999888 433 3799887754
No 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=1.2e-30 Score=228.91 Aligned_cols=145 Identities=10% Similarity=0.122 Sum_probs=120.4
Q ss_pred cceeeeeEEEEcCCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccc
Q psy8250 11 TNYKESLSGIAESGS--------------------LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge--------------------~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~ 70 (212)
+.++++|||++++|+ ++||+||||||||||+|+|+|+..| ++|+|.++|.+++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~~~g~~~t~----- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE-EEGAAKTGVVEVTM----- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT-STTSCCCCC----C-----
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc-cCceEEECCeecce-----
Confidence 358999999999999 9999999999999999999999998 69999999977531
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChH--HHHHHHHHHHHhh
Q psy8250 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG--ERKRVALAVQTII 148 (212)
Q Consensus 71 ~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG--qrqRv~lA~al~~ 148 (212)
.++++|++ .++.+|++|++.++. . ...+.++++.+++.+.. ..+. ||+| |+||+.||+||+.
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~-----~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS-----T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG-----S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc-----h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 467788888764421 0 12467889999987653 3333 9999 9999999999999
Q ss_pred ----------CCCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250 149 ----------VQSGFVPQHDLT-VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 149 ----------~p~llilDEPt~-lD~~~~~~~~~~l~~l~ 177 (212)
+|+++++||||+ ||+.++.++++.|+++.
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999985
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=2e-28 Score=190.69 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=97.0
Q ss_pred eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC-CCCHHHHHHHH
Q psy8250 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD-TLTVHEHMTLM 94 (212)
Q Consensus 16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~-~ltv~e~l~~~ 94 (212)
+|||++++|++++|+||||||||||++++.+-. ..+++. . ..++++|++.... .-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~~d-----~---~~g~~~~~~~~~~~~~~~~~~~--- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVISSD-----F---CRGLMSDDENDQTVTGAAFDVL--- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEEHH-----H---HHHHHCSSTTCGGGHHHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEccH-----H---HHHHhcCcccchhhHHHHHHHH---
Confidence 689999999999999999999999999964311 112111 1 1267777653110 00111111
Q ss_pred HhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh---------
Q psy8250 95 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL--------- 164 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~--------- 164 (212)
.. ........|.....+. ....|+|||||++||||++.+|++|+|||||+ ||+.
T Consensus 63 --------------~~-~~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 63 --------------HY-IVSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp --------------HH-HHHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred --------------HH-HHHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 11 1122233455544443 34569999999999999999999999999999 9999
Q ss_pred -------hHHHHHHHHHHHHhhc-----CcchHHHHHH
Q psy8250 165 -------TVHEHMTLMARLKMDR-----NLHHVERART 190 (212)
Q Consensus 165 -------~~~~~~~~l~~l~~~~-----~~h~~~~~~~ 190 (212)
...+++++|+++++++ .+|+++++..
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 5588899988887664 3799998754
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.94 E-value=8.3e-32 Score=227.67 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=118.4
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.+
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~---------------~~v~q~~~l 164 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL---------------SFANHKSHF 164 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE---------------CGGGTTSGG
T ss_pred EEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE---------------EEecCcccc
Confidence 67888897 67999999999999999999999999999999999987 68873 567888877
Q ss_pred CCCCCHHH-HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 82 VDTLTVHE-HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 82 ~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
+.. |+++ |+.+.. .... .+.++++.+ +....+ +..|||||||| ||||+.+|++|| |+
T Consensus 165 f~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 165 WLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 764 7775 665421 1111 344556654 443334 78999999999 999999999999 88
Q ss_pred -CChhhHHHHHHHHHHHHhhcCcchHHHHH--HHHHHHHhcCeeecCCchhh
Q psy8250 161 -VDTLTVHEHMTLMARLKMDRNLHHVERAR--TVDALLKELGLLKCRPADEL 209 (212)
Q Consensus 161 -lD~~~~~~~~~~l~~l~~~~~~h~~~~~~--~~~~~l~~g~~~~~~~~~~~ 209 (212)
||+.+...+.. .+|+++.+. +.. +|++|++++.|+++++
T Consensus 223 ~LD~~~~~~i~~---------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 223 NIDVQAEDRYLY---------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp SSCSTTCGGGGG---------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred CCCHHHHHHHHH---------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999988863 266654332 235 8889999999998876
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=6.8e-27 Score=202.50 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHHHHHH-
Q psy8250 126 NSVLNVLSGGERKRVALAVQTI------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERARTVD- 192 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~al~------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~~~~~- 192 (212)
++++.+||||||||++||+||+ .+|++|||||||+ ||+.++..++++|++++.++ ++||++.+..++
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 5678899999999999999999 6999999999999 99999999999999997653 379998754333
Q ss_pred -HHHHhcCeee
Q psy8250 193 -ALLKELGLLK 202 (212)
Q Consensus 193 -~~l~~g~~~~ 202 (212)
.+|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 3567787654
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.93 E-value=1.1e-29 Score=215.82 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=98.8
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcc
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 100 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~ 100 (212)
+++|+++||+||||||||||+++|+|++.| ..|. +.+++++|++.+++. |+.+|+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 799999999999999999999999999988 4553 348999999988887 99999764221
Q ss_pred cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC
Q psy8250 101 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD 162 (212)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD 162 (212)
.+.+.......+.++++.++ ....+.++..||+||+||+++|+|++.+|++||+|||+. +|
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 11122223456778888887 555567788999999999999999999999999999999 76
No 72
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.92 E-value=1.3e-28 Score=205.17 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=88.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCH
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 105 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 105 (212)
.++|+||||||||||+|+|+|+..| ++|+|.++|.++.....++.++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH----
Confidence 4899999999999999999999998 69999999998865555678999999999999999999998865432111
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 106 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 106 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
..+.+.+++. ....+..+.+|||||+||+++|||++. ++++|||+. +|+.. .++++.++.
T Consensus 79 --~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 79 --CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp --CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred --HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1112223332 334556678999999999999999875 999999999 99887 344445543
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=6.9e-26 Score=192.91 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=54.7
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHh----hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHH
Q psy8250 124 CKNSVLNVLSGGERKRVALAVQTI----IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVER 187 (212)
Q Consensus 124 ~~~~~~~~LSgGqrqRv~lA~al~----~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~ 187 (212)
..+.++.+||+|||||++||+||+ .+|+++||||||+ ||+.....++++|+++.... ++|+.+.
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV 284 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 356678899999999999999998 5789999999999 99999999999999985322 3798653
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=9.2e-28 Score=203.04 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=114.0
Q ss_pred cccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc--cceEEEEc
Q psy8250 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM--VKVSGFVP 76 (212)
Q Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~--~~~i~~v~ 76 (212)
..++....++.+||++++|++++|+||||||||||+++|+|++.| .+|+|.+.|.++... .+ +..++|++
T Consensus 82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 334443344678999999999999999999999999999999998 699999999887532 12 23589999
Q ss_pred CCCC-CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eE
Q psy8250 77 QHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GF 153 (212)
Q Consensus 77 Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--ll 153 (212)
|++. +++.+++++++.++.... .. ..+++.+|+.+..++++.+|| |||++|||||+.+|+ +|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred ecCCccCHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE
Confidence 9988 888889999998753211 00 134566788777778888999 999999999999999 99
Q ss_pred EecCCCC-CChhhH
Q psy8250 154 VPQHDLT-VDTLTV 166 (212)
Q Consensus 154 ilDEPt~-lD~~~~ 166 (212)
+|| ||+ +|+..+
T Consensus 226 vLD-ptsglD~~~~ 238 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQ 238 (302)
T ss_dssp EEE-GGGGGGGHHH
T ss_pred EEe-CCCCcCHHHH
Confidence 999 999 998755
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=1e-28 Score=197.55 Aligned_cols=166 Identities=14% Similarity=0.068 Sum_probs=110.0
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
..+++| .++++|++++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...++.++|+||++..|+.+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCC
Confidence 346777 68999999999999999999999999998853 2332222111111 1224568999999877776666665
Q ss_pred HHHHHhhhc---ccCCCHHHHHHHHHHH------HHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 91 MTLMARLKM---DRNLHHVERARTVDAL------LKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 91 l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
+..+..... ..+.+..+..+++.+. ++.+|+....++++..|| ||+.+|++++||||++
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHT
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHh
Confidence 432111110 0122344455556665 667777777788888998 8999999999999999
Q ss_pred C----ChhhHHHHHHHHHHHHhhc------CcchHHHHHHH
Q psy8250 161 V----DTLTVHEHMTLMARLKMDR------NLHHVERARTV 191 (212)
Q Consensus 161 l----D~~~~~~~~~~l~~l~~~~------~~h~~~~~~~~ 191 (212)
+ |+..++++++++++++.+. ++||++++...
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~ 194 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAE 194 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHH
Confidence 7 6778999999999997542 37999988763
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.2e-26 Score=182.07 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=94.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN 102 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~---~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~ 102 (212)
+++|+||||||||||+++|+|++. |.++|..... ...++.+||++|++ ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence 689999999999999999999874 2244433211 12356789999975 222221 0 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHH-----HhhCCCeEEecC--CCC-CChhhHHHHHHHHH
Q psy8250 103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ-----TIIVQSGFVPQH--DLT-VDTLTVHEHMTLMA 174 (212)
Q Consensus 103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~a-----l~~~p~llilDE--Pt~-lD~~~~~~~~~~l~ 174 (212)
. .-.+..++++.+||||||||++||+| ++.+|+++|||| ||+ +|+..++.+.+++.
T Consensus 64 ~----------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 F----------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp C----------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred C----------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 00135678889999999999999996 999999999999 999 99999999999887
Q ss_pred HHHhh--cCc---chHHHHHHHHHHHHhcCeee
Q psy8250 175 RLKMD--RNL---HHVERARTVDALLKELGLLK 202 (212)
Q Consensus 175 ~l~~~--~~~---h~~~~~~~~~~~l~~g~~~~ 202 (212)
+.... ..+ |+.+.+..... -.+|+++.
T Consensus 128 ~~~~~~i~~~H~~h~~~~~~~i~~-r~~~~i~~ 159 (178)
T 1ye8_A 128 DPNVNVVATIPIRDVHPLVKEIRR-LPGAVLIE 159 (178)
T ss_dssp CTTSEEEEECCSSCCSHHHHHHHT-CTTCEEEE
T ss_pred cCCCeEEEEEccCCCchHHHHHHh-cCCcEEEE
Confidence 62110 013 57666643211 12466654
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=3.5e-29 Score=202.27 Aligned_cols=173 Identities=12% Similarity=0.031 Sum_probs=109.0
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc----cccceEEEEcCCCCCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTL 85 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~----~~~~~i~~v~Q~~~~~~~l 85 (212)
.+..|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+++.. ..++.++|+||++..|+.+
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 345799999999999999999999999999999999987 4 88999 7765322 1345689999987654432
Q ss_pred CH-HHHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHH-----HHHHhhCCCeEEecCC
Q psy8250 86 TV-HEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL-----AVQTIIVQSGFVPQHD 158 (212)
Q Consensus 86 tv-~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~l-----A~al~~~p~llilDEP 158 (212)
+. .+++.+. .+.. ..+.+ ...++++++...+. ..+ .+|||||+||++| |++|+..|++++||||
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 10 0111000 0000 00111 12355666654332 122 5789999999999 8999999999999999
Q ss_pred CC-CChhhHHHHHHHHHHHHhh------c------CcchHHHHHH-HHHHHH
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD------R------NLHHVERART-VDALLK 196 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~------~------~~h~~~~~~~-~~~~l~ 196 (212)
++ +|..+...+.+.+.++..+ . .+|+++++.. ...++.
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 99 9999988888888766432 1 2688887755 344544
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=1.8e-26 Score=204.02 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=139.9
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE---eCCc--------ccc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEK--------NLM 68 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~---~~~~--------~~~ 68 (212)
++++++.|+ +..+++++ |++.+|++++|+||||||||||+++|+|+..| ++|.|.++|+ ++.. ..+
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~~~~~~~~~~~l 211 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGREVKDFIENILGPDGR 211 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHHTTTHHHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEeceecHHHHHHHHhhcccccc
Confidence 368899997 67899999 99999999999999999999999999999998 6999999998 4432 124
Q ss_pred cceEEEEcCC-CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh
Q psy8250 69 VKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI 147 (212)
Q Consensus 69 ~~~i~~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~ 147 (212)
++.++|++|. ..+++.+++.+|+.+.+...... .. ......+ .+..||+|| ||++|| +
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld-~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMD-SLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEE-CHHHHHHHH-HHHHHH---T
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHH-hHHHHHHHH-HHHHHH---h
Confidence 5779999995 45567778888887755432100 00 0111122 256799999 999999 8
Q ss_pred hCCCeEEecCCCC-CChhhHHHHHHHHHHHHh---h-c----------CcchHH-HHHHHHHHHHhcCeeecCCchhhh
Q psy8250 148 IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM---D-R----------NLHHVE-RARTVDALLKELGLLKCRPADELN 210 (212)
Q Consensus 148 ~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~---~-~----------~~h~~~-~~~~~~~~l~~g~~~~~~~~~~~~ 210 (212)
.+|++ |+ +|+.....+.+++.++.. + + .+||++ .+++...+|.+|+++.+++++++.
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHcc
Confidence 88887 88 999999999999999865 2 2 159986 333455688899999999888765
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.91 E-value=2.5e-25 Score=190.23 Aligned_cols=126 Identities=14% Similarity=0.065 Sum_probs=97.4
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.+++++||.+++|++++|+||||||||||+++|+|+++| ++|.|.++|.+.... ..++.++++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC-------------
Confidence 378999999999999999999999999999999999998 699999998642111 12333444420
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM 170 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~ 170 (212)
|||+||++||+||..+|++||+|||++ .+++
T Consensus 225 -------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~------~e~~ 255 (330)
T 2pt7_A 225 -------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS------SEAY 255 (330)
T ss_dssp -------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS------THHH
T ss_pred -------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh------HHHH
Confidence 899999999999999999999999998 2356
Q ss_pred HHHHHHHhhcC-----cchHHHHHHH--HHHHHhcCe
Q psy8250 171 TLMARLKMDRN-----LHHVERARTV--DALLKELGL 200 (212)
Q Consensus 171 ~~l~~l~~~~~-----~h~~~~~~~~--~~~l~~g~~ 200 (212)
++|+.+...+. +|+.+....+ ...|.+|..
T Consensus 256 ~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 67777765442 5887633333 346777764
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=2.7e-26 Score=197.96 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=112.2
Q ss_pred eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc--cceEEEEcCCCC-CCCC
Q psy8250 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDT 84 (212)
Q Consensus 15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~--~~~i~~v~Q~~~-~~~~ 84 (212)
..+||++++|++++|+||||||||||++.|+|++.| .+|+|.+.|.++... .+ +..++|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 578999999999999999999999999999999988 699999999887532 11 346899999988 8888
Q ss_pred CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-C
Q psy8250 85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-V 161 (212)
Q Consensus 85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-l 161 (212)
+++++++.++.... .. ..+++.+|+.+..++++.+|| +||++|||||+.+|+ +|+|| ||+ +
T Consensus 227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 89999998753211 00 124556788777777888999 999999999999999 99999 999 9
Q ss_pred ChhhH
Q psy8250 162 DTLTV 166 (212)
Q Consensus 162 D~~~~ 166 (212)
|+.++
T Consensus 291 D~~~~ 295 (359)
T 2og2_A 291 NMLPQ 295 (359)
T ss_dssp GGHHH
T ss_pred CHHHH
Confidence 98765
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=5.1e-25 Score=180.45 Aligned_cols=140 Identities=14% Similarity=0.041 Sum_probs=91.0
Q ss_pred ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCC
Q psy8250 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLT 86 (212)
Q Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~lt 86 (212)
+-+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccC
Confidence 346678999999999999999999999999999999999965 333333 2456789999985 677889
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CCh
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDT 163 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~ 163 (212)
+.+++.+........ .+.......+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||.. .+.
T Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 75 AEQKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred HhHhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 999987643321110 01111123344555543 345567789999999999988 58889999999999998 665
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.87 E-value=1.3e-23 Score=180.64 Aligned_cols=181 Identities=17% Similarity=0.095 Sum_probs=128.1
Q ss_pred CcccccccC-CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc----------cccc
Q psy8250 1 METFHPLFG-DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----------NLMV 69 (212)
Q Consensus 1 ~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~----------~~~~ 69 (212)
.+++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+..| +.|.|.+.|++... ..+.
T Consensus 48 ~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~~i~~~~~~~~~ 125 (347)
T 2obl_A 48 RQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNEFLALLPQSTLS 125 (347)
T ss_dssp CCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHTTSCHHHHT
T ss_pred ecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHHHHHhhhhhhhh
Confidence 367899997 77899999 99999999999999999999999999999998 69999998865211 1133
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHHHHhh
Q psy8250 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQTII 148 (212)
Q Consensus 70 ~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~al~~ 148 (212)
+.+.+++|.+. +..+.+..... ...+.+.+...+..- ..-..+..||+|| ||+++| +.
T Consensus 126 ~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~ 184 (347)
T 2obl_A 126 KCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SG 184 (347)
T ss_dssp TEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TT
T ss_pred ceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cC
Confidence 45778877432 23333221110 001111111111110 0114577899999 899999 57
Q ss_pred CCCeEEecCCCC-CChhhHHHHHHHHHHHHh-h-c----------CcchHH-HHHHHHHHHHhcCeeecCCchhhh
Q psy8250 149 VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM-D-R----------NLHHVE-RARTVDALLKELGLLKCRPADELN 210 (212)
Q Consensus 149 ~p~llilDEPt~-lD~~~~~~~~~~l~~l~~-~-~----------~~h~~~-~~~~~~~~l~~g~~~~~~~~~~~~ 210 (212)
+|++ |+ +|+.....+.+++.++.. + + .+||++ .+++...++.+|+++.++++++++
T Consensus 185 ~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 185 EPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp CCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcC
Confidence 7776 77 999999999999999864 2 2 159886 334556789999999999888764
No 83
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.85 E-value=7.1e-25 Score=185.21 Aligned_cols=157 Identities=14% Similarity=0.076 Sum_probs=80.5
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC-CCCCCceEEEECCEeCCcccccceEEEEcCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~-~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~ 80 (212)
.+|++.|+++.++++++|+| +|+||||||||||+++|+|. ..| .+| |.++|.++......+.+++++|.+.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~-~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP-ERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC-CCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 47899999999999999998 99999999999999999997 677 588 8888877643222345789999888
Q ss_pred CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC
Q psy8250 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT 160 (212)
Q Consensus 81 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~ 160 (212)
....++++|+..++..... .......+..+ .+..+.++.++|||||||+.+|||++ ++++||||+
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINC-----RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp CCEEEEEEEEC----------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred cccCcchhhhhhhhhhcCc-----HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 7788899988776533210 00000111111 22345677899999999999999986 999999986
Q ss_pred --CChhhHHHHHHHHHHHHhhc------CcchH
Q psy8250 161 --VDTLTVHEHMTLMARLKMDR------NLHHV 185 (212)
Q Consensus 161 --lD~~~~~~~~~~l~~l~~~~------~~h~~ 185 (212)
+|+... ++++++.... +.||+
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 899763 5666665431 26886
No 84
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=2.1e-22 Score=173.78 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=66.0
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------hCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc--CcchHHHHHHHH
Q psy8250 126 NSVLN-VLSGGERKRVALAVQTI---------IVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR--NLHHVERARTVD 192 (212)
Q Consensus 126 ~~~~~-~LSgGqrqRv~lA~al~---------~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~--~~h~~~~~~~~~ 192 (212)
++++. .||+|||||++||++|+ .+|++|||||||+ ||+..+..+++++.++...- .+|. +..+...
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i 337 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALT 337 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEE
Confidence 44556 79999999999999999 7999999999999 99999999999998875211 2563 3311112
Q ss_pred HHHHhcCeeecCCchhh
Q psy8250 193 ALLKELGLLKCRPADEL 209 (212)
Q Consensus 193 ~~l~~g~~~~~~~~~~~ 209 (212)
.++++|+++..|+++++
T Consensus 338 ~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 338 LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEETTEEEECCCTTTS
T ss_pred EEEECCEEEecCCHHHH
Confidence 35779999999999876
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=2.6e-22 Score=192.58 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=104.4
Q ss_pred ccccc-CCcceeeeeEEEEcC-------CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEE-E
Q psy8250 4 FHPLF-GDTNYKESLSGIAES-------GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-F 74 (212)
Q Consensus 4 l~~~~-~~~~~l~~vs~~i~~-------Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~-~ 74 (212)
+++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+ ..++| |
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~ 821 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCY 821 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCC
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEE
Confidence 67778 667899999999987 999999999999999999999 88753 11244 8
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 75 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
|||++. .+++.+++. ..+|+.+......+.+|+++++ +++|++++.+|+++|
T Consensus 822 Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 822 VPAEVC---RLTPIDRVF------------------------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp EESSEE---EECCCSBEE------------------------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred eccCcC---CCCHHHHHH------------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 998753 345544331 0122222233345678888775 999999999999999
Q ss_pred ecCCCC-CChhhH-HHHHHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCee
Q psy8250 155 PQHDLT-VDTLTV-HEHMTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLL 201 (212)
Q Consensus 155 lDEPt~-lD~~~~-~~~~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~ 201 (212)
||||++ +|+... ..++.+|.+++++ + .||+.+.+.... ..+.+|++.
T Consensus 874 LDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~ 930 (1022)
T 2o8b_B 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMA 930 (1022)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEE
Confidence 999999 999885 5578999998765 3 289999886532 123367665
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.83 E-value=1.8e-21 Score=161.20 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=76.4
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-ceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.+|+++| +++|++++|+||||||||||+++|+|++.| . +|+|.++|.++ +|++|.+..+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-~~~G~I~~~g~~i---------~~~~~~~~~~-------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIEDPI---------EYVFKHKKSI-------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-HCCCEEEEEESSC---------CSCCCCSSSE--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC-CCCCEEEEcCCcc---------eeecCCccee--------
Confidence 5899999 999999999999999999999999999887 5 89999988765 2333322100
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM 170 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~ 170 (212)
.. . ..+|+.. ..| |++||+||..+|++|++|||+ |+.+...++
T Consensus 75 ------v~--q---------------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~--D~~~~~~~l 117 (261)
T 2eyu_A 75 ------VN--Q---------------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR--DLETVETAL 117 (261)
T ss_dssp ------EE--E---------------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC--SHHHHHHHH
T ss_pred ------ee--H---------------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC--CHHHHHHHH
Confidence 00 0 0223321 122 899999999999999999999 887765443
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=1.1e-21 Score=164.46 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=99.1
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
..+|+++++.+++|++++|+||||||||||++.|+|...| .+| .|.+.+.+.....+.+.+.++++... +++.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 4589999999999999999999999999999999999887 467 67554444433223333333333321 12333
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHH-HHHHHHHHHHhhCCCeEEecCCCC-CC-----
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE-RKRVALAVQTIIVQSGFVPQHDLT-VD----- 162 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq-rqRv~lA~al~~~p~llilDEPt~-lD----- 162 (212)
++.... + ...+..+.+.++++..++. ....+..+|.++ +||+. |+++..+|+++|+|||++ ++
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 443321 1 1112223344444433331 233346789998 66666 999999999999999999 53
Q ss_pred -h-hhHHHHHHHHHHHHhh
Q psy8250 163 -T-LTVHEHMTLMARLKMD 179 (212)
Q Consensus 163 -~-~~~~~~~~~l~~l~~~ 179 (212)
. ....++++.|++++++
T Consensus 167 d~~~~~~~i~~~L~~la~~ 185 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKS 185 (296)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3 4557788888888765
No 88
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=5.8e-23 Score=163.00 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=101.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC-----CCCCceEEEECCEeCCcccccceEEEE
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI-----QGDVDGQILLNGLEVEKNLMVKVSGFV 75 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G~I~~~g~~~~~~~~~~~i~~v 75 (212)
++++++.|+. .++++ |.+.+|..++|+|+||||||||++.|+|.. .| +.|.+.+.+.-. ....+- +
T Consensus 6 ~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-~~G~~~~~~~~~----~~~~~~-l 76 (210)
T 1pui_A 6 YQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFE----VADGKR-L 76 (210)
T ss_dssp -----CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEE----EETTEE-E
T ss_pred hhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC-CCccceeeEEEE----ecCCEE-E
Confidence 4688999974 67777 889999999999999999999999999987 55 577665422100 000011 1
Q ss_pred cCCCCCC----CCCC---HHHHHHHHHhh-hc--------ccCCCHHHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHH
Q psy8250 76 PQHDLTV----DTLT---VHEHMTLMARL-KM--------DRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERK 138 (212)
Q Consensus 76 ~Q~~~~~----~~lt---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrq 138 (212)
.+.|... +... ....+...... .. ............+.+++...++... ...++..+|+||+|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 1112111 0000 11112121110 00 0000001122345566777787653 36678899999999
Q ss_pred H-HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250 139 R-VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 139 R-v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~ 179 (212)
| +..+++++.+|.++++|||+| +|..+..++++.|.++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9 899999999999999999999 9999999999999887654
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.81 E-value=5.8e-22 Score=167.57 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=101.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------c--cceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------M--VKVSGFVPQHDLTVDTLTVHEHMTL 93 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~--~~~i~~v~Q~~~~~~~ltv~e~l~~ 93 (212)
+|++++|+||||||||||+++|+|++.| .+|+|.+.|.++.... + +..++|++|++..++..++++|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999998 6999999999874321 1 2458999999988888899999876
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHH
Q psy8250 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLM 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l 173 (212)
..... .. ..+++..|..+..... ++..++||++||||++.+|+.++| .||+.+...+++.+
T Consensus 180 ~~~~~--~d----------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lL----vLDa~t~~~~~~~~ 240 (304)
T 1rj9_A 180 MKARG--YD----------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWL----VLDAVTGQNGLEQA 240 (304)
T ss_dssp HHHHT--CS----------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEE----EEETTBCTHHHHHH
T ss_pred HHhCC--CC----------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEE----EEcHHHHHHHHHHH
Confidence 43210 00 0122223433222223 344558999999999999994444 45555555666667
Q ss_pred HHHHhhc------CcchHHH
Q psy8250 174 ARLKMDR------NLHHVER 187 (212)
Q Consensus 174 ~~l~~~~------~~h~~~~ 187 (212)
+++++.. .||+.+.
T Consensus 241 ~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHcCCcEEEEECCccc
Confidence 7765542 2687544
No 90
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=3.2e-19 Score=152.72 Aligned_cols=62 Identities=27% Similarity=0.277 Sum_probs=53.3
Q ss_pred cCCCCCCCChHHHH------HHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250 125 KNSVLNVLSGGERK------RVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE 186 (212)
Q Consensus 125 ~~~~~~~LSgGqrq------Rv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~ 186 (212)
.++++.+||||||| |+++|+||+.+|++|||||||+ ||+..+..++++|.++..+. .+||.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~ 315 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence 45678999999999 6677788888999999999999 99999999999999986543 379854
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=3.7e-21 Score=182.38 Aligned_cols=155 Identities=20% Similarity=0.247 Sum_probs=114.4
Q ss_pred HHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC-CC----HHHHHHHHH
Q psy8250 39 TLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LH----HVERARTVD 113 (212)
Q Consensus 39 TLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~----~~~~~~~~~ 113 (212)
|+..|..+.+.| ..++|.++|+++.. +..+++.+++.|......... .. .........
T Consensus 383 ~C~~C~g~rl~~-~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNR-EALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCT-TGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCCh-HhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 344556666777 68999999988632 223466666665432211000 00 011123345
Q ss_pred HHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cch
Q psy8250 114 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHH 184 (212)
Q Consensus 114 ~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~ 184 (212)
++|..+|+... .++++.+|||||+|||+|||||+.+|+ +|||||||+ ||+....+++++|+++++++. +||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67888999764 689999999999999999999999887 999999999 999999999999999986543 799
Q ss_pred HHHHHHHH--HHH------HhcCeeecCCchhhh
Q psy8250 185 VERARTVD--ALL------KELGLLKCRPADELN 210 (212)
Q Consensus 185 ~~~~~~~~--~~l------~~g~~~~~~~~~~~~ 210 (212)
++.+..++ ..| ++|++++.|+++++.
T Consensus 526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp HHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 98876544 356 899999999999874
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.81 E-value=1.4e-22 Score=161.72 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=102.2
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC--CCCCHHHHHHHHHhhh
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLK 98 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~--~~ltv~e~l~~~~~~~ 98 (212)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+++.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997643 378999988765 56788887654211
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHH----HHHHHHHHHhhCCCeEEecCCCC--------CChhhH
Q psy8250 99 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER----KRVALAVQTIIVQSGFVPQHDLT--------VDTLTV 166 (212)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqr----qRv~lA~al~~~p~llilDEPt~--------lD~~~~ 166 (212)
. +.......+.++++.+++.+..+.++.++|+||+ ||+++|++++.+|+++++|||++ +|+...
T Consensus 61 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 61 H----PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp S----GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred C----hhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 0 1111234566778888887777778889999974 78899999999999999999987 588888
Q ss_pred HHHHHHHHHHH
Q psy8250 167 HEHMTLMARLK 177 (212)
Q Consensus 167 ~~~~~~l~~l~ 177 (212)
.++.+.+.+..
T Consensus 137 ~~~~r~l~r~~ 147 (211)
T 3asz_A 137 ERFIRRLKRDV 147 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88988887753
No 93
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=9.7e-20 Score=164.06 Aligned_cols=65 Identities=26% Similarity=0.246 Sum_probs=57.2
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHHHHH
Q psy8250 127 SVLNVL-SGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERARTV 191 (212)
Q Consensus 127 ~~~~~L-SgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~~~~ 191 (212)
+++..| ||||+|||+||+||+.+| ++|||||||+ ||+.+...+.++|++++... +||+++.+..+
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARA 464 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHS
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence 356677 999999999999999999 9999999999 99999999999999997632 38998877543
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.81 E-value=5.8e-21 Score=178.58 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=94.6
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv 87 (212)
++..+++|+||+ |++++|+||||||||||||+|+|+.. + ..|.+. . ..+..+++++| +++.+++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCcee------e--hhccceeeHHH---hhccCCH
Confidence 445689999998 99999999999999999999999864 5 467642 1 12334677766 4555566
Q ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCC---CC-C
Q psy8250 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHD---LT-V 161 (212)
Q Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEP---t~-l 161 (212)
.||+.. .+|+|+++++.+|+++ +.+|+++||||| |+ +
T Consensus 629 ~d~l~~-------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 629 SDDLAG-------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp -------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred HHHHHh-------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 554321 3589999999999999 999999999999 99 9
Q ss_pred ChhhH-HHHHHHHHHHHhhc---CcchHHHHH
Q psy8250 162 DTLTV-HEHMTLMARLKMDR---NLHHVERAR 189 (212)
Q Consensus 162 D~~~~-~~~~~~l~~l~~~~---~~h~~~~~~ 189 (212)
|+.+. ..+++.|.+ .... .||+.+.+.
T Consensus 672 D~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 672 DGVAIATAVAEALHE-RRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEECCCHHHHT
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 99876 567887766 2111 389987753
No 95
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.80 E-value=1.6e-20 Score=178.18 Aligned_cols=135 Identities=13% Similarity=0.045 Sum_probs=90.3
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHH
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHE 89 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e 89 (212)
+..+++||||++++|++++|+||||||||||||+|+++......|. .+... ...++++ ..++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~--~~~i~~~---d~i~~------ 721 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE--EATIGIV---DGIFT------ 721 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS--EEEEECC---SEEEE------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch--hhhhhHH---HHHHH------
Confidence 4678999999999999999999999999999999986432111121 00000 0011111 01111
Q ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHH
Q psy8250 90 HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHE 168 (212)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~ 168 (212)
.+|+.+......+.+|+||+|++.|+++ +.+|+++|||||++ +|+.....
T Consensus 722 ----------------------------~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 722 ----------------------------RMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp ----------------------------EC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred ----------------------------hCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 1222223334557889999999999998 89999999999999 99999988
Q ss_pred HH-HHHHHHHhh-c-----CcchHHHHHH
Q psy8250 169 HM-TLMARLKMD-R-----NLHHVERART 190 (212)
Q Consensus 169 ~~-~~l~~l~~~-~-----~~h~~~~~~~ 190 (212)
+. .++..++.+ + .||+.+.+..
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHHHH
Confidence 86 778888653 2 3799876643
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=5.9e-24 Score=191.89 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=108.1
Q ss_pred ccccccCCcceeeeeEE-EEcCCcEEEEECCCCccHHHHHHH--HHcCCCCCCceEEEECCEeCCcc--cccceEEEEcC
Q psy8250 3 TFHPLFGDTNYKESLSG-IAESGSLLAIMGPSGAGKTTLLAC--ISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQ 77 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~--i~g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q 77 (212)
++.+.+++..+|++|+| .+++|++++|+||||||||||+++ ++|+.+| .+|.|+++|.+.... ..++.+||++|
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 45555667889999999 999999999999999999999999 7899887 599999999874221 23456799999
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecC
Q psy8250 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQH 157 (212)
Q Consensus 78 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDE 157 (212)
++.... ++.+ ... .. . ....++++.+++.+..++.+..||+| +|+++++||
T Consensus 96 ~~~~~~------~l~~---~~~-~~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 96 KLVDEG------KLFI---LDA-SP-D-----PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp HHHHTT------SEEE---EEC-CC-C-----SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEEC
T ss_pred HhhccC------cEEE---Eec-Cc-c-----cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECC
Confidence 753211 1100 000 00 0 00112233334444444555556665 588999999
Q ss_pred CCC-C-----ChhhHHHHHHHHHHHHhhcC-----cchHHHH
Q psy8250 158 DLT-V-----DTLTVHEHMTLMARLKMDRN-----LHHVERA 188 (212)
Q Consensus 158 Pt~-l-----D~~~~~~~~~~l~~l~~~~~-----~h~~~~~ 188 (212)
||+ + |+..++.++++++++++.+. +|+++.+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 997 4 77889999999999987542 6988764
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=7.5e-20 Score=165.08 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=100.7
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 97 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~ 97 (212)
++.+.+|++++|+||||||||||+++++|...+ .|. +.+.|++|++. .++.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~--------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA--NKE--------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTC--------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCC--------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 458999999999999999999999999998766 343 11456677641 1222221 111
Q ss_pred hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChh-----hHHHHHH
Q psy8250 98 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTL-----TVHEHMT 171 (212)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~-----~~~~~~~ 171 (212)
+.. +.+ +...|+....+.++.+||+||+||+++|+++..+|+++|+| ||+ +|.. .+..+.+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 121 112 33567777788889999999999999999999999999999 999 9999 8999999
Q ss_pred HHHHHHhhcC-----cchH
Q psy8250 172 LMARLKMDRN-----LHHV 185 (212)
Q Consensus 172 ~l~~l~~~~~-----~h~~ 185 (212)
+++.+++.+. +|+.
T Consensus 399 ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHhCCCEEEEEECcc
Confidence 9999886542 5876
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=2.6e-21 Score=183.99 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=98.5
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHH--------HcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI--------SQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i--------~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+..+++|++|++++|++++|+||||||||||||+| .|.+.| ..+.. ++++. .+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp-a~~~~---------------~~~~d---~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP-CESAE---------------VSIVD---CI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS-EEEEE---------------EECCS---EE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc-ccccc---------------chHHH---HH
Confidence 45688999999999999999999999999999999 555444 22211 11100 00
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH--hhCCCeEEecCCC
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT--IIVQSGFVPQHDL 159 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al--~~~p~llilDEPt 159 (212)
+..+|+. +.....+|+|++++..+|+++ +.+|+++|||||+
T Consensus 709 ----------------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~ 751 (934)
T 3thx_A 709 ----------------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELG 751 (934)
T ss_dssp ----------------------------------EEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCS
T ss_pred ----------------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 0011111 112345788888888888888 8999999999999
Q ss_pred C-CChhhHHHH-HHHHHHHHhh-c-----CcchHHHHHHHH--HHHHhcCeeecCCchhh
Q psy8250 160 T-VDTLTVHEH-MTLMARLKMD-R-----NLHHVERARTVD--ALLKELGLLKCRPADEL 209 (212)
Q Consensus 160 ~-lD~~~~~~~-~~~l~~l~~~-~-----~~h~~~~~~~~~--~~l~~g~~~~~~~~~~~ 209 (212)
+ +|+.....+ +.++..++.+ + .||+.+.+...+ ..+++|++.+.++++++
T Consensus 752 ~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 752 RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 9 999998888 7778888763 2 379977654333 35778888877766654
No 99
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.79 E-value=1e-21 Score=151.18 Aligned_cols=87 Identities=24% Similarity=0.202 Sum_probs=74.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~ 81 (212)
+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ | .+|+|.++|.++....... .+++|++.+
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~--~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIA--GKMIYHFDL 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEET--TEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCC--Ccceecccc
Confidence 35678898888999999999999999999999999999999999999 8 6999999998774321111 278999888
Q ss_pred CCCCCHHHHHHH
Q psy8250 82 VDTLTVHEHMTL 93 (212)
Q Consensus 82 ~~~ltv~e~l~~ 93 (212)
+ .+|+.||+.+
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 8 8999999865
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.77 E-value=2.1e-21 Score=177.98 Aligned_cols=145 Identities=10% Similarity=0.091 Sum_probs=91.2
Q ss_pred CcccccccCCc--ceeeee----------EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC----
Q psy8250 1 METFHPLFGDT--NYKESL----------SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---- 64 (212)
Q Consensus 1 ~~~l~~~~~~~--~~l~~v----------s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~---- 64 (212)
+++++..|+.. .+++.+ +++++. +||+||||||||||+++|+|+..|..+|.|+++|.++.
T Consensus 13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~ 89 (608)
T 3szr_A 13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL 89 (608)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence 35677777642 344444 355554 99999999999999999999987734999999998862
Q ss_pred --cccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHH
Q psy8250 65 --KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142 (212)
Q Consensus 65 --~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~l 142 (212)
...+++.++|+||++.+++.+||.+|+.+......... .++. ++++.+
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s--------------~~~i~l 139 (608)
T 3szr_A 90 VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS--------------HELITL 139 (608)
T ss_dssp SSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC--------------SCCEEE
T ss_pred CccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc--------------hHHHHH
Confidence 12456789999999999999999999987543221100 0111 011222
Q ss_pred HHHHhhCCCeEEecCC------CC-CChhhHHHHHHHHHHHHh
Q psy8250 143 AVQTIIVQSGFVPQHD------LT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 143 A~al~~~p~llilDEP------t~-lD~~~~~~~~~~l~~l~~ 178 (212)
+.+....|+++|+||| |+ +|+..+.++.+++.++..
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 2233458999999999 99 999999999999999743
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.4e-20 Score=165.33 Aligned_cols=138 Identities=11% Similarity=0.023 Sum_probs=85.7
Q ss_pred CcccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc--ccccceEEEEcCC
Q psy8250 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVSGFVPQH 78 (212)
Q Consensus 1 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~--~~~~~~i~~v~Q~ 78 (212)
++++++.|+++.+++++||+| +|+||||||||||+++|+|...+ ..| .+|..+.. ....+.+++++|.
T Consensus 14 ~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~-~~~---~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 14 FANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY-SPE---YPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC-CCC---CCSCC-----CCEEEEEECC---
T ss_pred EEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC-CCC---CCCcccCCccceeeeeEEEEEec
Confidence 468999999999999999998 99999999999999999998875 244 12222211 1123457899998
Q ss_pred CCCCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC---eEEe
Q psy8250 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS---GFVP 155 (212)
Q Consensus 79 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~---llil 155 (212)
+.+++.+|++|++.++..... ......+.+.++ ..++.+++||++||||++.+|+ ++++
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp ---CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred CCcccceeeeechhhhhhccc------hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 888888899999877543210 001111222221 1345677889999999999999 9999
Q ss_pred cCCC-C-CChhhH
Q psy8250 156 QHDL-T-VDTLTV 166 (212)
Q Consensus 156 DEPt-~-lD~~~~ 166 (212)
|||| . +|+...
T Consensus 146 dePt~~~L~~~d~ 158 (418)
T 2qag_C 146 IAPSGHGLKPLDI 158 (418)
T ss_dssp CCC-CCSCCHHHH
T ss_pred ecCcccCCCHHHH
Confidence 9999 5 888763
No 102
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=9.3e-19 Score=165.65 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHhhhcccCCCH----------HHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC-
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHH----------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ- 150 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p- 150 (212)
..+||.|++.|...+. ++. .+...++ ++|..+||... +++.+.+|||||+|||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~----l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE----LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp HTSBHHHHHHHHHHCC----CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred hhCCHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCC
Confidence 3579999999965542 222 2334455 46899999864 79999999999999999999999985
Q ss_pred -CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHHH--HH------HhcCeeecCCchhhhc
Q psy8250 151 -SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVDA--LL------KELGLLKCRPADELNR 211 (212)
Q Consensus 151 -~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~~--~l------~~g~~~~~~~~~~~~~ 211 (212)
++|||||||+ ||+...+.++++|+++++.++ +|+++++..++. .| ++|++++.|+++++.+
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9999999999 999999999999999987643 699988754442 45 7999999999988753
No 103
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=3.9e-20 Score=162.38 Aligned_cols=167 Identities=11% Similarity=0.107 Sum_probs=105.2
Q ss_pred cccccccCCcceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD 79 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~ 79 (212)
.+ ++.|++.. ++++||++++|++ ++|+||||||||||+++|+|+.. .|.-.. .......++.++|++|++
T Consensus 20 ~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~~---~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 20 AG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPAT---HTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp CC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC-
T ss_pred ee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcCC---CCCccceEeeEEEEeecC
Confidence 45 78898877 9999999999999 99999999999999999999742 222110 011112345689999998
Q ss_pred CCCCCCCHHHHHHHHHhhhcccCCC--HHHHHHHHHHHHHHc-CCcc----ccCCCC-----------CCCChHHHHHHH
Q psy8250 80 LTVDTLTVHEHMTLMARLKMDRNLH--HVERARTVDALLKEL-GLLK----CKNSVL-----------NVLSGGERKRVA 141 (212)
Q Consensus 80 ~~~~~ltv~e~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~-gl~~----~~~~~~-----------~~LSgGqrqRv~ 141 (212)
.+++.+|+.||+.++........+. .......+.+++... ++.. ..+.++ ..|+-.. +.
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ie 168 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LV 168 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HH
T ss_pred ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HH
Confidence 8888889998876643211000000 011233455566655 4431 112221 2466555 78
Q ss_pred HHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHH-HHhh
Q psy8250 142 LAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMAR-LKMD 179 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~-l~~~ 179 (212)
++++|..++++|++|||+. +.+.....+.+.+++ +...
T Consensus 169 ilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~ 208 (427)
T 2qag_B 169 TMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSN 208 (427)
T ss_dssp HHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999 988888888888876 6544
No 104
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.75 E-value=7e-22 Score=169.33 Aligned_cols=171 Identities=7% Similarity=0.005 Sum_probs=117.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEE
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGF 74 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~ 74 (212)
+++++.|+...+++++||++.+|++++|+||||||||||+++|+|++.| .+|+|.+.|.++... ..++.+++
T Consensus 33 ~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~ 111 (337)
T 2qm8_A 33 RRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSSTRTGGSILGDKTRMAR 111 (337)
T ss_dssp SSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGGGSSCCCSSCCGGGSTT
T ss_pred CCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcccccccchHHHhhhhee
Confidence 5678888878899999999999999999999999999999999999988 699999999887431 23556899
Q ss_pred EcCCCCCCCCCC------------HHHHHHHHHh-------------------hhcc-------cCCC-HHHHH---HHH
Q psy8250 75 VPQHDLTVDTLT------------VHEHMTLMAR-------------------LKMD-------RNLH-HVERA---RTV 112 (212)
Q Consensus 75 v~Q~~~~~~~lt------------v~e~l~~~~~-------------------~~~~-------~~~~-~~~~~---~~~ 112 (212)
++|++.++...+ +.|.+..... .... .... ..... ..+
T Consensus 112 v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i 191 (337)
T 2qm8_A 112 LAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGI 191 (337)
T ss_dssp GGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTH
T ss_pred eccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHH
Confidence 999987765321 2232211100 0000 0000 00000 001
Q ss_pred HHHHHHcCCccccCC-CCCCCChHHHHHHHHHHHHhh------CCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 113 DALLKELGLLKCKNS-VLNVLSGGERKRVALAVQTII------VQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 113 ~~~l~~~gl~~~~~~-~~~~LSgGqrqRv~lA~al~~------~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
.+....+.+ +..|. ....+|+|++|++..|++++. .|++++ +| +|.....++++.|.++..
T Consensus 192 ~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 192 FELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111111222 33442 235689999999999999987 688876 88 999999999999988654
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=2.9e-21 Score=152.77 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=86.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN 102 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~ 102 (212)
|++++|+||||||||||+++|+|++. . +| |.++|...... .+++.+||++|+.. .. .+++. ++.. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~-~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l~---~~~~--~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S-SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPLS---RVGL--E 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H-TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEEE---ECCC--C
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c-CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehhh---cccc--c
Confidence 78999999999999999999999886 4 89 99998877432 35677899999751 11 01110 0000 0
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHH-HHHH---HHhhCCCeEEecC--CCC-CChhhHHHHHHHHHH
Q psy8250 103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV-ALAV---QTIIVQSGFVPQH--DLT-VDTLTVHEHMTLMAR 175 (212)
Q Consensus 103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv-~lA~---al~~~p~llilDE--Pt~-lD~~~~~~~~~~l~~ 175 (212)
.+ ...-.+...++...+|+|||+++ ++++ |++.+|+++|+|| |+. +|....+.+.+++..
T Consensus 68 ~~-------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 68 PP-------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp CC-------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred CC-------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 00 00001234555667999999988 4454 6899999999999 787 788766666666653
No 106
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.75 E-value=1.8e-21 Score=159.22 Aligned_cols=145 Identities=15% Similarity=0.082 Sum_probs=101.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHH---cCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh--
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACIS---QRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-- 97 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~---g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~-- 97 (212)
++++++|+||||||||||+++|+ |+..+ +.|+|.++|.+... .....+++++|++.+++..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~-~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL-SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE-EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe-cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 99888 68998887654321 1223345667777778888999998764321
Q ss_pred h---cccCCCHHHHHHHHHHHH--HHcC------------CccccCCCCCCCChHHHHHHHHHHHH-hhCCCeEEec---
Q psy8250 98 K---MDRNLHHVERARTVDALL--KELG------------LLKCKNSVLNVLSGGERKRVALAVQT-IIVQSGFVPQ--- 156 (212)
Q Consensus 98 ~---~~~~~~~~~~~~~~~~~l--~~~g------------l~~~~~~~~~~LSgGqrqRv~lA~al-~~~p~llilD--- 156 (212)
. ...+.+... ..+..+. ..++ +....++++..||| |+ +|+ +.+|+++++|
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 001111111 1122222 1223 23345777889999 66 778 9999999999
Q ss_pred -CCCC-CChhhHHHHHHHHHHHHh
Q psy8250 157 -HDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 157 -EPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
|||+ +|+.+...+.+.+..+.+
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHH
Confidence 9999 999999999999888764
No 107
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.75 E-value=2.5e-19 Score=154.18 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=90.6
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC-CCCceEEEEC-CEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-GDVDGQILLN-GLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~-p~~~G~I~~~-g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.++++++. .+|++++|+||||||||||+|+|+|... | .+|+|.++ |..... .....+++++|++.+++.++++++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI-LTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC-CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc-ccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHh
Confidence 35566664 5899999999999999999999999998 8 69999987 765422 235568999999888888888874
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
. + ...+..+....+.++++.+++..+.+..+.+|| ||+||++||+++
T Consensus 282 ~-----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h-----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 1 123445556678889999999999999999999 999999999875
No 108
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=2.4e-18 Score=151.63 Aligned_cols=61 Identities=23% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCCCChHHHHHHHHHHHHhh----CCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHHHH
Q psy8250 128 VLNVLSGGERKRVALAVQTII----VQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVERA 188 (212)
Q Consensus 128 ~~~~LSgGqrqRv~lA~al~~----~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~~~ 188 (212)
++..||||||||++||++|+. +|+++|||||++ ||+..+..+.++|.++..+. ++|+.+..
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 345699999999999999994 799999999999 99999999999999886422 37986543
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.74 E-value=1.1e-21 Score=172.32 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=103.3
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cccceEEE
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LMVKVSGF 74 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~~~~i~~ 74 (212)
+++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|++.| .+|.|.+.+.++... .+...+++
T Consensus 147 ~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~ 223 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVDM 223 (418)
T ss_dssp GGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGTB
T ss_pred HHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccCc
Confidence 5677777777788888 5 389999999999999999999999999988 599999988776321 12334455
Q ss_pred Ec---------CCCCCC--CC----CCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHH
Q psy8250 75 VP---------QHDLTV--DT----LTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138 (212)
Q Consensus 75 v~---------Q~~~~~--~~----ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrq 138 (212)
.| |+|..+ .+ .|+.+++.+...-+.. ........ ..+...|..+++.+.. .+..|||||+|
T Consensus 224 ~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~~~~LSgg~~Q 300 (418)
T 1p9r_A 224 TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--ISSSLLGVLAQ 300 (418)
T ss_dssp CHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--HHHHEEEEEEE
T ss_pred CHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--HHHHHHHHHHH
Confidence 44 888652 33 5888888775421100 00000001 1223356778887653 67899999999
Q ss_pred HHHHHHHHhhCCCeEEe
Q psy8250 139 RVALAVQTIIVQSGFVP 155 (212)
Q Consensus 139 Rv~lA~al~~~p~llil 155 (212)
| |||+|+.+|++..-
T Consensus 301 R--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 301 R--LVRTLCPDCKEPYE 315 (418)
T ss_dssp E--EEEEECTTTCEEEE
T ss_pred H--hhhhhcCCCCccCC
Confidence 9 99999999998763
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=3.9e-20 Score=150.28 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=85.1
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHH--cCCCCCCceEEEECCEeCCcc--cccceEEEEcCCCCCCCCCCHHHHHHHHH
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMA 95 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~--g~~~p~~~G~I~~~g~~~~~~--~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~ 95 (212)
.|++|++++|+||||||||||+++|+ |+..+ ..|.+++++...... ...+.++|++|+...++.+++.++.....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 68999999999999999999999999 65345 367777776543211 12234566666543333333333221110
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CC-----hhhHHHH
Q psy8250 96 RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VD-----TLTVHEH 169 (212)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD-----~~~~~~~ 169 (212)
.. .... ........+.++......+..-..+|+++++|||++ +| +..++.+
T Consensus 105 ~~----------~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l 161 (251)
T 2ehv_A 105 GL----------PSEE-------------KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVL 161 (251)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHH
T ss_pred cc----------cccc-------------ceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHH
Confidence 00 0000 000112234455555555545568999999999999 86 5666668
Q ss_pred HHHHHHHHhhcC-----cchHHHH
Q psy8250 170 MTLMARLKMDRN-----LHHVERA 188 (212)
Q Consensus 170 ~~~l~~l~~~~~-----~h~~~~~ 188 (212)
.++++.+++.+. +|+.+.+
T Consensus 162 ~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 162 LKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHHHHHHCCEEEEEECCC---
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 999999876642 6988776
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.74 E-value=1.1e-20 Score=148.19 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=92.5
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~ 98 (212)
.+++|++++|+||||||||||+++|+|. + ..|.|.++|.++... ...+.++|++|.+. +..++.+++.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~-~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P-GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S-SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c-CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999997 5 589999998765321 11233567777543 3567888877644321
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCcccc--CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHH
Q psy8250 99 MDRNLHHVERARTVDALLKELGLLKCK--NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARL 176 (212)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l 176 (212)
...+.. ..++.++..+++.... +.++..+|+|++|+++++|++..+|+++ +|+...+.+++.+..+
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-------CCHHHHHHHHHHTTCC
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-------CCHHHHHHHHHHHhcc
Confidence 100000 0001111112222222 4456789999999999999999998765 5777777777777655
Q ss_pred H
Q psy8250 177 K 177 (212)
Q Consensus 177 ~ 177 (212)
.
T Consensus 148 ~ 148 (191)
T 1zp6_A 148 G 148 (191)
T ss_dssp G
T ss_pred C
Confidence 3
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=1.5e-18 Score=164.63 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHHhhhcccCCCH----------HHHHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhC-
Q psy8250 82 VDTLTVHEHMTLMARLKMDRNLHH----------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIV- 149 (212)
Q Consensus 82 ~~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~- 149 (212)
+..+||.|.+.|...+. ++. .+...++ ++|..+|+... +++.+.+|||||+|||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 34578888888743332 222 2334444 46888999865 7999999999999999999999999
Q ss_pred -CCeEEecCCCC-CChhhHHHHHHHHHHHHhhcC-----cchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 150 -QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-----LHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 150 -p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-----~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
|++|||||||+ ||+...+.++++|+++++.++ +|+++.+..++ ..| ++|++++.|+++++.+
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 59999999999 999999999999999987653 69998775443 245 7899999999988753
No 113
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.73 E-value=5e-19 Score=166.32 Aligned_cols=149 Identities=12% Similarity=0.014 Sum_probs=94.9
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHH
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVH 88 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~ 88 (212)
++..+++|++|+ ++|++++|+||||||||||||+|+|+..+...|. .+.. ....+++++| ++..+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS--SEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch--hcccceeHHH---HHhhCCHH
Confidence 456789999999 9999999999999999999999999753212331 1211 1223555544 44444555
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHH
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVH 167 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~ 167 (212)
+++.. ..+.+|+++++ ++.+...+.+|+++|||||++ +|+....
T Consensus 661 d~l~~----------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~ 705 (800)
T 1wb9_A 661 DDLAS----------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGL 705 (800)
T ss_dssp -------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHH
T ss_pred HHHHh----------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHH
Confidence 54321 11235666664 444456789999999999999 8888777
Q ss_pred HH-HHHHHHHHhh-c-----CcchHHHHHHHHH--HHHhcCeeecC
Q psy8250 168 EH-MTLMARLKMD-R-----NLHHVERARTVDA--LLKELGLLKCR 204 (212)
Q Consensus 168 ~~-~~~l~~l~~~-~-----~~h~~~~~~~~~~--~l~~g~~~~~~ 204 (212)
.+ +.++..++++ + .||+.+.+...+. .+.++++..+.
T Consensus 706 ~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 706 SLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 65 7888888763 3 3799876543332 34566554433
No 114
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.9e-20 Score=145.90 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=87.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCC---ceEEEECCEeCCc------cccc-ceEE----EEcCCCCCCCCCCHHHH
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEVEK------NLMV-KVSG----FVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p~~---~G~I~~~g~~~~~------~~~~-~~i~----~v~Q~~~~~~~ltv~e~ 90 (212)
++++|+||||||||||+++|+|++.| . .|.|.++|.++.. ..++ +.++ +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-RGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-TTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-cCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec-
Confidence 58999999999999999999999987 5 7999999987421 1233 3466 7888765541 00
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHH-c-CCccccCCCCCCCChHHHHHHHHHHHHhhCCCeE-------EecCCC--
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKE-L-GLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGF-------VPQHDL-- 159 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~ll-------ilDEPt-- 159 (212)
. .. +....+.++++. + |++.... ..|||||+||++||||++.+|++. +-|.|.
T Consensus 77 -----------~-~~-~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 77 -----------V-SE-EEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp -----------C-CH-HHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred -----------C-Ch-hhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0 00 001134455554 4 4443332 249999999999999999999874 335553
Q ss_pred -C-CChhhHHHHHHHHHHHHhhcCcch
Q psy8250 160 -T-VDTLTVHEHMTLMARLKMDRNLHH 184 (212)
Q Consensus 160 -~-lD~~~~~~~~~~l~~l~~~~~~h~ 184 (212)
. +|......+.+++.+...+.++||
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~~~~~ 167 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREGGSHH 167 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC-----
T ss_pred CcccCcccHHHHHHHHHHHHhccCccc
Confidence 3 566677888888877666666554
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.71 E-value=4.2e-17 Score=135.58 Aligned_cols=147 Identities=17% Similarity=0.126 Sum_probs=96.6
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhc
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 99 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~ 99 (212)
-+++|++++|+||||||||||++.+++... .|.++ .|.+... ...+.|+..+. +..+.......+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~------~~~~~~~r~~~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAED------PPTAIHHRLHALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSS------CHHHHHHHHHHHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCC------CHHHHHHHHHHHH-
Confidence 478999999999999999999999998553 46553 3543311 23466765543 2211111111111
Q ss_pred ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC---CChhhH---HHHHHHH
Q psy8250 100 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT---VDTLTV---HEHMTLM 173 (212)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~---lD~~~~---~~~~~~l 173 (212)
.... .....++++.+++.+..++.+..||+||+|++ ++++.+|+++|+|||++ +|+... .++++.|
T Consensus 92 -~~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 -AHLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp -TTSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred -hhcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 1111 12345678888888888889999999998765 68889999999999999 476444 7788888
Q ss_pred HHHHhh-cC-----cchHHHH
Q psy8250 174 ARLKMD-RN-----LHHVERA 188 (212)
Q Consensus 174 ~~l~~~-~~-----~h~~~~~ 188 (212)
.++.++ +. +|+...+
T Consensus 164 ~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHcCCEEEEEecCCCcc
Confidence 888644 22 4666544
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.71 E-value=1.6e-19 Score=145.88 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=90.5
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCH----HHHHHH
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV----HEHMTL 93 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv----~e~l~~ 93 (212)
-..++|++++|+||||||||||+++|+|+++| ...|.|.+.+.+... ..++.++|+||++..|+.+++ .||+.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 34789999999999999999999999999875 258999888766532 224557899997654433333 122111
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHH
Q psy8250 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLM 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l 173 (212)
... +.|-.+++ +..++..++++||| +|+.+..++++.+
T Consensus 90 ~~~-----------------------------------~yg~~~~~---v~~~l~~G~illLD----LD~~~~~~i~~~l 127 (219)
T 1s96_A 90 FGN-----------------------------------YYGTSREA---IEQVLATGVDVFLD----IDWQGAQQIRQKM 127 (219)
T ss_dssp TTE-----------------------------------EEEEEHHH---HHHHHTTTCEEEEE----CCHHHHHHHHHHC
T ss_pred Hhc-----------------------------------cCCCCHHH---HHHHHhcCCeEEEE----ECHHHHHHHHHHc
Confidence 000 00000111 23444558999999 9999999999987
Q ss_pred HHHHhhc----CcchHHHHHHHHHHHHhcCeeecCCchhhh
Q psy8250 174 ARLKMDR----NLHHVERARTVDALLKELGLLKCRPADELN 210 (212)
Q Consensus 174 ~~l~~~~----~~h~~~~~~~~~~~l~~g~~~~~~~~~~~~ 210 (212)
. ... .+|+++.+.. .++.+| .++++++.
T Consensus 128 ~---~~~tI~i~th~~~~l~~--Rl~~rG----~~~~e~i~ 159 (219)
T 1s96_A 128 P---HARSIFILPPSKIELDR--RLRGRG----QDSEEVIA 159 (219)
T ss_dssp T---TCEEEEEECSSHHHHHH--HHHTTS----CSCHHHHH
T ss_pred c---CCEEEEEECCCHHHHHH--HHHHcC----CCCHHHHH
Confidence 6 211 3799988765 346666 45666664
No 117
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=1.2e-19 Score=156.11 Aligned_cols=154 Identities=15% Similarity=0.082 Sum_probs=95.7
Q ss_pred eeeee-EEEEcCCcEEEEECCCCccHHHHHHHHHcCC--CCCCc----eE-EEECCEeCCcccccceEEEEcCCCCCCCC
Q psy8250 13 YKESL-SGIAESGSLLAIMGPSGAGKTTLLACISQRI--QGDVD----GQ-ILLNGLEVEKNLMVKVSGFVPQHDLTVDT 84 (212)
Q Consensus 13 ~l~~v-s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~--~p~~~----G~-I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ 84 (212)
.|+.+ ++.+++|++++|+||||||||||++.+++.. +| .+ |. |++++.+.. .++.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 45554 5789999999999999999999999999987 44 34 67 888876541 23346667776554432
Q ss_pred CCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh-------hCCCeEEecC
Q psy8250 85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI-------IVQSGFVPQH 157 (212)
Q Consensus 85 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~-------~~p~llilDE 157 (212)
++.+|+.+.. . .-|.+++|++.++++++ .+|+++|+||
T Consensus 195 -~v~~ni~~~~------~----------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 195 -EVLKHIYVAR------A----------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp -HHGGGEEEEE------C----------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred -HHhhCEEEEe------c----------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 3433332110 0 01456777777777777 6899999999
Q ss_pred CCC-CChhh------------HHHHHHHHHHHHhhcC------cchHHHHHH---HHHHHHhcCeeecCC
Q psy8250 158 DLT-VDTLT------------VHEHMTLMARLKMDRN------LHHVERART---VDALLKELGLLKCRP 205 (212)
Q Consensus 158 Pt~-lD~~~------------~~~~~~~l~~l~~~~~------~h~~~~~~~---~~~~l~~g~~~~~~~ 205 (212)
||+ +|+.. ..+++..|.++.++.+ +|....... .......|+++++++
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999 88752 3555666666655432 365443321 112344677666654
No 118
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=8e-19 Score=140.80 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=73.2
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCC------CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHH
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGD------VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 93 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~------~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~ 93 (212)
-+++|++++|+||||||||||+++|+|...++ ..|.+++++.+.. ..+.+++++|...+++. ++.+|+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 58999999999999999999999999965541 2336666554321 01123344444333322 33333221
Q ss_pred HHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChH-HHHHHHHHHHHhh-------CCCeEEecCCCC-CChh
Q psy8250 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG-ERKRVALAVQTII-------VQSGFVPQHDLT-VDTL 164 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG-qrqRv~lA~al~~-------~p~llilDEPt~-lD~~ 164 (212)
....+.+ +++.+..+++++. +|+++++|||++ +|+.
T Consensus 97 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 97 -----------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp -----------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred -----------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 0112223 2333555555555 899999999999 8873
Q ss_pred -------h-----HHHHHHHHHHHHhh
Q psy8250 165 -------T-----VHEHMTLMARLKMD 179 (212)
Q Consensus 165 -------~-----~~~~~~~l~~l~~~ 179 (212)
. ..++++.|.++.++
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~ 168 (231)
T 4a74_A 142 YIGRGALAERQQKLAKHLADLHRLANL 168 (231)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 2 23677777776554
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.69 E-value=1.3e-20 Score=162.85 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=97.6
Q ss_pred eeeeeEEEEcC--CcEEEEECCCCccHHHHHHHHHcCCCCCCc----eEEEEC----CEeCCcccccceEEEEcCCCCCC
Q psy8250 13 YKESLSGIAES--GSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLN----GLEVEKNLMVKVSGFVPQHDLTV 82 (212)
Q Consensus 13 ~l~~vs~~i~~--Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~----G~I~~~----g~~~~~~~~~~~i~~v~Q~~~~~ 82 (212)
+.+.|+++|.+ |+.++|+||||||||||+++|+|++.| .+ |+|+++ |.++ .+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~-~~~~e~G~i~i~~~~~~~~~-----------------~~ 218 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT-TSAWEYGREFVFEKLGGDEQ-----------------AM 218 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC-EEECCTTHHHHHHSSSSCTT-----------------SS
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC-CcchhhHHHHHHhhcCCCcc-----------------cC
Confidence 35679999999 999999999999999999999999988 57 776653 2211 00
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcC--CccccCCCCCCCChHHHHHHHHHHHHh-hCCCeEEecC--
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG--LLKCKNSVLNVLSGGERKRVALAVQTI-IVQSGFVPQH-- 157 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~LSgGqrqRv~lA~al~-~~p~llilDE-- 157 (212)
..... +++.+..... ........+.+- -.+..+..+..+|+|++|+..+++++. .+|+++||||
T Consensus 219 ~~~~~-~~I~~~~q~~----------~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 219 QYSDY-PQMALGHQRY----------IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp CTTTH-HHHHHHHHHH----------HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred ChhHH-HHHHHHHHHH----------HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 11112 2233211100 000000000000 011112223345677788888887774 5899999999
Q ss_pred -CC------C-CChhhHHHHHHHHHHHHhh-cC-----cch--HHHHHHHHHHHHhcCeeecCCchhhhc
Q psy8250 158 -DL------T-VDTLTVHEHMTLMARLKMD-RN-----LHH--VERARTVDALLKELGLLKCRPADELNR 211 (212)
Q Consensus 158 -Pt------~-lD~~~~~~~~~~l~~l~~~-~~-----~h~--~~~~~~~~~~l~~g~~~~~~~~~~~~~ 211 (212)
|+ . +|+..+..+.+.|.++..+ .. +|. .+.......++++ ++..++++++.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 64 4 7999999999999887542 21 342 2333333445544 556767777654
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=9e-18 Score=144.72 Aligned_cols=116 Identities=24% Similarity=0.230 Sum_probs=74.3
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhc
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 99 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~ 99 (212)
.+.+|++++|+||||||||||+++|+|++.|..+|.|...+.++.. ......++++|........+..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH----------
Confidence 5678899999999999999999999999887325666554433321 12223345555432111111110
Q ss_pred ccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHhh
Q psy8250 100 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~~ 179 (212)
+||+||.++|++|++|||+ |.... +.+.+++..
T Consensus 188 -----------------------------------------~La~aL~~~PdvillDEp~--d~e~~----~~~~~~~~~ 220 (356)
T 3jvv_A 188 -----------------------------------------ALRSALREDPDIILVGEMR--DLETI----RLALTAAET 220 (356)
T ss_dssp -----------------------------------------HHHHHTTSCCSEEEESCCC--SHHHH----HHHHHHHHT
T ss_pred -----------------------------------------HHHHHhhhCcCEEecCCCC--CHHHH----HHHHHHHhc
Confidence 9999999999999999999 54443 333333433
Q ss_pred c-----CcchHHHHHHHHH
Q psy8250 180 R-----NLHHVERARTVDA 193 (212)
Q Consensus 180 ~-----~~h~~~~~~~~~~ 193 (212)
+ ++|+.+.+..++.
T Consensus 221 G~~vl~t~H~~~~~~~~dR 239 (356)
T 3jvv_A 221 GHLVFGTLHTTSAAKTIDR 239 (356)
T ss_dssp TCEEEEEESCSSHHHHHHH
T ss_pred CCEEEEEEccChHHHHHHH
Confidence 2 2688776644443
No 121
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.68 E-value=7.3e-19 Score=148.37 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=86.0
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCccc--cc-ceEEEEcCCCCCC-----CCCCHH
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKNL--MV-KVSGFVPQHDLTV-----DTLTVH 88 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~~--~~-~~i~~v~Q~~~~~-----~~ltv~ 88 (212)
++.+|++++|+||||||||||+|+|+ +..| .+|+|.+ +|++++... .+ +.+||++|+|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34679999999999999999999999 8888 6999999 898875421 12 3579999998653 67899
Q ss_pred HHH--HHHH----hhhcccCCCHHHHHHHHHHHHHHcCCcc-ccCCCCCCCChHHHHHHHHHH
Q psy8250 89 EHM--TLMA----RLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV 144 (212)
Q Consensus 89 e~l--~~~~----~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqrqRv~lA~ 144 (212)
+++ .|+. ..+.....+..+....+.++++.+++.+ ..++++..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887 4431 0011110111233456889999999986 788899999998899999986
No 122
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.68 E-value=3.2e-17 Score=154.39 Aligned_cols=103 Identities=23% Similarity=0.260 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCccc-cCCCCCCCChHHHHHHHHHHHHhhCC--CeEEecCCCC-CChhhHHHHHHHHHHHHhhcC--
Q psy8250 108 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQTIIVQ--SGFVPQHDLT-VDTLTVHEHMTLMARLKMDRN-- 181 (212)
Q Consensus 108 ~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqrqRv~lA~al~~~p--~llilDEPt~-lD~~~~~~~~~~l~~l~~~~~-- 181 (212)
...++. .+..+|+... .++++.+|||||+|||+||++|+.+| .+|||||||+ ||+...+.++++|++++..++
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344454 6889999865 79999999999999999999999999 5999999999 999999999999999987643
Q ss_pred ---cchHHHHHHHH--HHH------HhcCeeecCCchhhhc
Q psy8250 182 ---LHHVERARTVD--ALL------KELGLLKCRPADELNR 211 (212)
Q Consensus 182 ---~h~~~~~~~~~--~~l------~~g~~~~~~~~~~~~~ 211 (212)
+|+++.+..++ ..| ++|++++.|+++++.+
T Consensus 435 IvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 435 FVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred EEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 69998664433 255 7899999999998754
No 123
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.66 E-value=4.3e-19 Score=139.13 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=100.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 103 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 103 (212)
|++++|+||||||||||+++|++ + .+|.++++|.++... ...++++|....++..++++++.+..........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~-~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q-LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H-SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c-cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999997 4 478999988665221 1245666654333445677776654332110000
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCCCC--ChHHHHHHHHHH------HHhhCCCeEEecCCCCCChhhHHHHHHHHHH
Q psy8250 104 HHVERARTVDALLKELGLLKCKNSVLNVL--SGGERKRVALAV------QTIIVQSGFVPQHDLTVDTLTVHEHMTLMAR 175 (212)
Q Consensus 104 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~L--SgGqrqRv~lA~------al~~~p~llilDEPt~lD~~~~~~~~~~l~~ 175 (212)
..+++.+. .....+....+ |+||+|++.++. +++.+|+...+|+ .+|+..... ++.+..
T Consensus 75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~--~ld~~~~~~-~~~~~~ 141 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE--QMGERCLEL-VEEFES 141 (189)
T ss_dssp ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHH-HHHHHH
T ss_pred ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc--cCCHHHHHH-HHHHhh
Confidence 00000000 00000111233 888888888888 9999999988883 488888887 888877
Q ss_pred HHhhc-----Ccch-HHHHHH-HHHHHHhcCeeecCCchhh
Q psy8250 176 LKMDR-----NLHH-VERART-VDALLKELGLLKCRPADEL 209 (212)
Q Consensus 176 l~~~~-----~~h~-~~~~~~-~~~~l~~g~~~~~~~~~~~ 209 (212)
+.... ++|. ++.+.. ++.++++|+++++|+++-+
T Consensus 142 ~~~~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 142 KGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp TTCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred cCCCccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 64332 3676 666655 3456699999999988754
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.66 E-value=4.7e-17 Score=140.50 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=80.3
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC-CcccccceEEEEc-CCCCCCCCCCHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSGFVP-QHDLTVDTLTVHEHM 91 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~-~~~~~~~~i~~v~-Q~~~~~~~ltv~e~l 91 (212)
++++||.+++|++++|+||||||||||+++|+|+++| .+|.|.++|..- .....++.++|++ |++..
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence 3999999999999999999999999999999999998 699999987432 1122456788988 54321
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT 171 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~ 171 (212)
.++++..++-.|+.++..+|+.+++|||.. .++.+
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------~~~~~ 268 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------GEAYD 268 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS------THHHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH------HHHHH
Confidence 012333467788888888999999999986 23455
Q ss_pred HHHHHHhh
Q psy8250 172 LMARLKMD 179 (212)
Q Consensus 172 ~l~~l~~~ 179 (212)
++..+...
T Consensus 269 ~l~~l~~g 276 (361)
T 2gza_A 269 FINVAASG 276 (361)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 66666543
No 125
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.62 E-value=3.3e-16 Score=125.33 Aligned_cols=145 Identities=13% Similarity=0.048 Sum_probs=92.3
Q ss_pred cceeeeeEE-EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccccc---ceEEEEcCCCCCCCCCC
Q psy8250 11 TNYKESLSG-IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV---KVSGFVPQHDLTVDTLT 86 (212)
Q Consensus 11 ~~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~---~~i~~v~Q~~~~~~~lt 86 (212)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+....... ..+++.+|..... .+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 456788886 7999999999999999999999999987766 467776654433211111 1112222211000 000
Q ss_pred HHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCC--eEEecCCCC-C--
Q psy8250 87 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQS--GFVPQHDLT-V-- 161 (212)
Q Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~--llilDEPt~-l-- 161 (212)
...... ..++ ... .....|.++.++...+.+...+|+ ++|+|||++ +
T Consensus 87 ------------~~~~~~------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 87 ------------IIDALM------------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp ------------EEECCC-----------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred ------------EEeccc------------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence 000000 0001 011 123449999999888888888999 999999998 7
Q ss_pred ChhhHHHHHHHHHHHHhhc------CcchH
Q psy8250 162 DTLTVHEHMTLMARLKMDR------NLHHV 185 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~~~~------~~h~~ 185 (212)
|+....++++.|+++..+. .+|+.
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 9999999999999986553 25876
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=2.2e-18 Score=147.10 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=110.0
Q ss_pred cccccccCCcceeeeeEEEEcCC-------cEEEEECCCCccHHHHHHHHHcCC----CCCCceEEEECCEeCCc---cc
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESG-------SLLAIMGPSGAGKTTLLACISQRI----QGDVDGQILLNGLEVEK---NL 67 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~G-------e~~~iiGpnGaGKSTLl~~i~g~~----~p~~~G~I~~~g~~~~~---~~ 67 (212)
++++..||...+++++++.+.+| +.++|+||||+|||||+++|++.+ .+ .+|.+..++.++.. ..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~-~sg~~~~~~~~l~~~~~~~ 100 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV-TSGPVLVKQGDMAAILTSL 100 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE-EETTTCCSHHHHHHHHHHC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-EechHhcCHHHHHHHHHHc
Confidence 56788888888999999999887 899999999999999999999987 44 46766655544321 11
Q ss_pred ccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC-CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHH
Q psy8250 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT 146 (212)
Q Consensus 68 ~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al 146 (212)
.+..+.|+.|...+.+ ++.|++..........- .........+...+..+++.. ..+++..||+|++||+.++
T Consensus 101 ~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~--- 174 (334)
T 1in4_A 101 ERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII--- 174 (334)
T ss_dssp CTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE---
T ss_pred cCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce---
Confidence 2346899999776654 78887754332211000 001122234455566666654 6677889999999998655
Q ss_pred hhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-cCcchHHH
Q psy8250 147 IIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-RNLHHVER 187 (212)
Q Consensus 147 ~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-~~~h~~~~ 187 (212)
. +|+.+..++.++|++.... ...|+.+.
T Consensus 175 -------------~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~ 204 (334)
T 1in4_A 175 -------------LELDFYTVKELKEIIKRAASLMDVEIEDAA 204 (334)
T ss_dssp -------------EECCCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred -------------eeCCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence 5 8888999999999887653 23455443
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.61 E-value=3.7e-20 Score=157.36 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=89.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC--------CCCCceEEEECCEeCCcc------------------cccceEEEE---
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI--------QGDVDGQILLNGLEVEKN------------------LMVKVSGFV--- 75 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~--------~p~~~G~I~~~g~~~~~~------------------~~~~~i~~v--- 75 (212)
++++|+|+||||||||+|.|.|.. .| +.|+|.++|.++... .+.+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~-d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN-EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS-SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe-cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 589999999999999999999986 56 699999999887432 122345666
Q ss_pred cCCCCCCCCCCHHHHHHHHH--hhh-cccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCe
Q psy8250 76 PQHDLTVDTLTVHEHMTLMA--RLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSG 152 (212)
Q Consensus 76 ~Q~~~~~~~ltv~e~l~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~l 152 (212)
+|++.++++.++.|+..++. .+. .....+.......+..++..+++.+..++.. ++|+||+||+..+++++.+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 57666566667777654321 000 0000000000011122233334444333333 7999999999888888888887
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHH
Q psy8250 153 FVPQHDLTVDTLTVHEHMTLMARLK 177 (212)
Q Consensus 153 lilDEPt~lD~~~~~~~~~~l~~l~ 177 (212)
+ ||| .++.+.+++++
T Consensus 163 ~--de~--------~~l~~~l~~l~ 177 (318)
T 1nij_A 163 A--GEA--------EKLHERLARIN 177 (318)
T ss_dssp C--SCT--------HHHHHHHHHHC
T ss_pred C--CHH--------HHHHHHHHHhC
Confidence 6 777 67777777765
No 128
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.61 E-value=5.1e-16 Score=118.00 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=55.0
Q ss_pred cCCCCCCCChHHHHHHHHH------HHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhhc-----CcchHH
Q psy8250 125 KNSVLNVLSGGERKRVALA------VQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR-----NLHHVE 186 (212)
Q Consensus 125 ~~~~~~~LSgGqrqRv~lA------~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~-----~~h~~~ 186 (212)
.++++.+||||||||++|| |||+.+|+++||||||+ ||+.++..+.++|.+++.+. .+|+.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 4678899999999999876 89999999999999999 99999999999999986543 379874
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.60 E-value=9.4e-18 Score=149.33 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=69.2
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------c--ccceEEEEcCCCCCCCC
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------L--MVKVSGFVPQHDLTVDT 84 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~--~~~~i~~v~Q~~~~~~~ 84 (212)
-+++||++.+|++++|+||||||||||+++|+|++.+ .+|+|.+.|.+.... . .++.++|++|++.+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 4689999999999999999999999999999999988 699999987776431 1 24568999999888888
Q ss_pred CCHHHHHHHHH
Q psy8250 85 LTVHEHMTLMA 95 (212)
Q Consensus 85 ltv~e~l~~~~ 95 (212)
+++++|+.++.
T Consensus 362 ~tV~e~l~~a~ 372 (503)
T 2yhs_A 362 SVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999998764
No 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.60 E-value=2.8e-16 Score=136.20 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=73.3
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCC-ceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~-~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
+|++++ +++|++++|+||||||||||+++|+|++.| . +|.|.+.+.++. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-HSCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-CCCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 456655 789999999999999999999999999887 5 799977765553 12344567787731
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHH
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVH 167 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~ 167 (212)
+|+. +..+ +.+|+++|..+|++|++|||+ |+....
T Consensus 191 ---------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~--d~e~~~ 225 (372)
T 2ewv_A 191 ---------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR--DLETVE 225 (372)
T ss_dssp ---------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC--SHHHHH
T ss_pred ---------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC--CHHHHH
Confidence 1221 1233 469999999999999999999 555433
No 131
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.59 E-value=1.7e-17 Score=139.87 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=74.3
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCccc---ccceEEEEcCCCC------------
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKNL---MVKVSGFVPQHDL------------ 80 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~~---~~~~i~~v~Q~~~------------ 80 (212)
|++.+|++++|+||||||||||+|+|+|+..| ++|+|.+ +|++++... ..+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc-cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 34568999999999999999999999999999 6999999 898875421 1235799999985
Q ss_pred ----CCCCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCc-cccCCCCCCCCh
Q psy8250 81 ----TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSG 134 (212)
Q Consensus 81 ----~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSg 134 (212)
+++++|+ +|+.|....+ ..+...++.++|+.++|. +..++++..||.
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4788888 8887642111 112345688999999995 677888888885
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.58 E-value=3e-17 Score=137.78 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=86.5
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHh---hh
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR---LK 98 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~---~~ 98 (212)
.++.++||.||+|||||||.+.|.+++.+ .|. . ++.+.+|+|++.+++. +..+|+.+... ..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g~-----------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KYG-----------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HHG-----------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cCC-----------C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 56889999999999999999999998865 330 0 2335566999877765 88888876521 01
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCc--------cccCCCCCCCChHHHHHHHHH--HHHhhCCCeEEecCCCC-CChh
Q psy8250 99 MDRNLHHVERARTVDALLKELGLL--------KCKNSVLNVLSGGERKRVALA--VQTIIVQSGFVPQHDLT-VDTL 164 (212)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gl~--------~~~~~~~~~LSgGqrqRv~lA--~al~~~p~llilDEPt~-lD~~ 164 (212)
...+.+.......+.+.++.+.-. .....+...+||||+||+.+| +++ +|+|+|+|||++ +|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 001111111233455666666322 123455678999999999997 555 999999999999 9985
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.57 E-value=6.3e-17 Score=137.99 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=88.9
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc-------ccc--eEEEEcCCCCCCCCCCHHHHH
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-------MVK--VSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~-------~~~--~i~~v~Q~~~~~~~ltv~e~l 91 (212)
.++|++++|+||||||||||+++|+|++.| .+|+|.+.|.++.... +.+ .+.+++|...++|.+++++|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 368999999999999999999999999998 6999999999875321 122 245999999888999999999
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT 171 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~ 171 (212)
.++..... .. -+++..|..+.....+.+|| .+++++..++.++++|.++ ...+.+
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t------~~~~~~ 259 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA------GNAIVE 259 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG------TTHHHH
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH------HHHHHH
Confidence 87532110 00 01122233322223333333 4888887666666666444 445666
Q ss_pred HHHHHHhh
Q psy8250 172 LMARLKMD 179 (212)
Q Consensus 172 ~l~~l~~~ 179 (212)
.++.+++.
T Consensus 260 ~~~~~~~~ 267 (328)
T 3e70_C 260 QARQFNEA 267 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666644
No 134
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.56 E-value=9.5e-17 Score=135.61 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=70.9
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE---CCEeCCcc-cccce-EEEEcCCCCCCC----CCCHHH
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL---NGLEVEKN-LMVKV-SGFVPQHDLTVD----TLTVHE 89 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~---~g~~~~~~-~~~~~-i~~v~Q~~~~~~----~ltv~e 89 (212)
+++.+|++++|+||||||||||+|+|+|...| .+|+|.+ +|+.++.. .+.+. ++|++|+|.+.. .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL-RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc-cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 56789999999999999999999999999988 6999998 88776542 22222 699999997765 6789 8
Q ss_pred HHH--HHHh--h----hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHH
Q psy8250 90 HMT--LMAR--L----KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139 (212)
Q Consensus 90 ~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqR 139 (212)
++. |... + +........+....+.++++.+++.+...+....++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 883 3311 1 000001111233568899999999876555566777788773
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=1.6e-16 Score=139.47 Aligned_cols=133 Identities=19% Similarity=0.124 Sum_probs=82.7
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEE----------cCCCCCCC
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV----------PQHDLTVD 83 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v----------~Q~~~~~~ 83 (212)
-++++|+++.|+.++|+|+|||||||||++|++..+ .+.+.+.+. ....++++ .+.|.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ftT--l~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFTT--LSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTCS--SCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccce--ecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999732 122222211 11123333 33333322
Q ss_pred CCCHHHHHHHHHhhhcccCCCHHH--HHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-
Q psy8250 84 TLTVHEHMTLMARLKMDRNLHHVE--RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT- 160 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~- 160 (212)
... ++ ..+.... ..++++.++..+++. +.++.+||+|++|++.+|++|+.+|.++++ +
T Consensus 218 ~a~--~~----------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 218 GAS--EG----------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp CGG--GS----------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred chh--hh----------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 100 00 0111100 011122233333443 566788999999999999999999999999 7
Q ss_pred CChhhHHHHHHHHHH
Q psy8250 161 VDTLTVHEHMTLMAR 175 (212)
Q Consensus 161 lD~~~~~~~~~~l~~ 175 (212)
+|+... ..++.+.+
T Consensus 279 lDl~~~-~~~~~l~~ 292 (416)
T 1udx_A 279 VDLLEE-EAVKALAD 292 (416)
T ss_dssp CTTSCH-HHHHHHHH
T ss_pred CChhhH-HHHHHHHH
Confidence 999877 44444433
No 136
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.55 E-value=2.2e-17 Score=131.68 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=78.2
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~ 98 (212)
.++|++++|+||||||||||+++|+|++.|. ..|.|.++|..+.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCC
Confidence 5789999999999999999999999998751 24555544443321 1111110000000
Q ss_pred cccCCCHHHHHHHHHHHHHHc--C--CccccCCCCCCCChHHHHHHHHH-HHHhhCCCeEEecCCC-----------C-C
Q psy8250 99 MDRNLHHVERARTVDALLKEL--G--LLKCKNSVLNVLSGGERKRVALA-VQTIIVQSGFVPQHDL-----------T-V 161 (212)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~--g--l~~~~~~~~~~LSgGqrqRv~lA-~al~~~p~llilDEPt-----------~-l 161 (212)
...... ...+.+.+..+ + +..........+|+||+||+++| ++++.++.++++|||. . +
T Consensus 79 ~~~~~~----~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 79 APETFD----FEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp SGGGBC----HHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred CCchhh----HHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 000001 11112222222 1 11111222345799999999998 9999999999999985 3 5
Q ss_pred ChhhHHHHHHHHHHHH
Q psy8250 162 DTLTVHEHMTLMARLK 177 (212)
Q Consensus 162 D~~~~~~~~~~l~~l~ 177 (212)
|......+..++++..
T Consensus 155 d~~~~~~~~R~~~R~~ 170 (208)
T 3c8u_A 155 EVPMADLEARLVQRWL 170 (208)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHH
Confidence 6666666677776653
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.5e-19 Score=149.27 Aligned_cols=145 Identities=13% Similarity=0.167 Sum_probs=99.5
Q ss_pred ccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCCC-CCC
Q psy8250 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQHD-LTV 82 (212)
Q Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~~-~~~ 82 (212)
.|++..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++... ...+.++++||.. ...
T Consensus 29 ~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSA 103 (274)
T ss_dssp HHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC
T ss_pred HhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 355667899999999999 999999999999999999997753 6899999876432 1234567777764 334
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCC---
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDL--- 159 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt--- 159 (212)
+.+++.|++......+ . .. .. . ......++.+.+|||||+||+.+++|+..+|++| |||+
T Consensus 104 p~i~~~Deid~~~~~r---~----~~--~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~ 166 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRR---S----DR--ET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRP 166 (274)
T ss_dssp SEEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred CCeEeeehhhhhhccc---C----CC--cc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence 4455555554321100 0 00 00 0 1223345567789999999999999999999975 9985
Q ss_pred ---------C-CChhhHHHHHHHH
Q psy8250 160 ---------T-VDTLTVHEHMTLM 173 (212)
Q Consensus 160 ---------~-lD~~~~~~~~~~l 173 (212)
. -|...+.++++.+
T Consensus 167 gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 167 GRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCeEEEeCCcCHHHHHHHHHHH
Confidence 2 3666777776654
No 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.49 E-value=5e-16 Score=131.23 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=75.0
Q ss_pred cccccccCCcceeeeeEEEE-------------------cCCcEEEEECCCCccHHHHHHHHHcCCC--CCCceEEEE--
Q psy8250 2 ETFHPLFGDTNYKESLSGIA-------------------ESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILL-- 58 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i-------------------~~Ge~~~iiGpnGaGKSTLl~~i~g~~~--p~~~G~I~~-- 58 (212)
+++++.|+ .+++++++.+ .+|+++||+||||||||||+++|+|++. | ++|+|.+
T Consensus 41 ~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~ 117 (308)
T 1sq5_A 41 EEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP-EHRRVELIT 117 (308)
T ss_dssp HHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-TCCCEEEEE
T ss_pred HhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEe
Confidence 56778884 6889999988 8999999999999999999999999887 8 6999999
Q ss_pred -CCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhh
Q psy8250 59 -NGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 98 (212)
Q Consensus 59 -~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~ 98 (212)
+|..... ..++.++++ |...+++.+++.+++.+...+.
T Consensus 118 ~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 118 TDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp GGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred cCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 8876532 223456888 8777778889999988765543
No 139
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.49 E-value=3.1e-14 Score=110.79 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=54.0
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhhC----CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHHHH
Q psy8250 125 KNSVLNVLSGGERKRVALAVQTIIV----QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVERA 188 (212)
Q Consensus 125 ~~~~~~~LSgGqrqRv~lA~al~~~----p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~~~ 188 (212)
..+++..||||||||++||++|+.+ |+++||||||+ ||+.+...+.++|+++.... .+|+....
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~ 130 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM 130 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 3456789999999999999999854 59999999999 99999999999999986543 26876543
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.47 E-value=3.5e-14 Score=119.92 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHH
Q psy8250 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA 95 (212)
Q Consensus 16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~ 95 (212)
.+++...+|++++|+|||||||||+++.|++.+.+ ..|+|.+.+.+.... ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccH-------------------HHHH------
Confidence 45666789999999999999999999999999887 578888765543110 0011
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHH---HHHHHHhhCCCeEEecCCCCCChhhHHHHHHH
Q psy8250 96 RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV---ALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTL 172 (212)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv---~lA~al~~~p~llilDEPt~lD~~~~~~~~~~ 172 (212)
.+..+++.+++.. +...|+|+.+++ ++++|+..+|+++|+|||..+ .....+++.
T Consensus 150 ---------------qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~--~~~~~l~~e 207 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRL--HTKKNLMEE 207 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCC--SCHHHHHHH
T ss_pred ---------------HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCch--hhHHHHHHH
Confidence 1223445566653 235689999999 999999999999999999862 334445544
Q ss_pred HHHHH
Q psy8250 173 MARLK 177 (212)
Q Consensus 173 l~~l~ 177 (212)
|.+++
T Consensus 208 L~~l~ 212 (306)
T 1vma_A 208 LRKVH 212 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=3.5e-14 Score=107.78 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=61.5
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
+++++ +|+.++|+||||||||||+++|++.+.+ +| .+++++.++. ..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~------------------~~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMP------------------LT------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSC------------------CC------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhh------------------HH------
Confidence 45555 8999999999999999999999998765 45 3333332210 00
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM 170 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~ 170 (212)
+++.+|++|++|||+++++..++.++
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~~~~~~~~~l~ 104 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEKLGNEEQALLF 104 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTCCCSHHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccccChHHHHHHH
Confidence 23568999999999997666688899
Q ss_pred HHHHHHHhh
Q psy8250 171 TLMARLKMD 179 (212)
Q Consensus 171 ~~l~~l~~~ 179 (212)
+++.++.++
T Consensus 105 ~li~~~~~~ 113 (149)
T 2kjq_A 105 SIFNRFRNS 113 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999887664
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.46 E-value=3.1e-14 Score=113.20 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=74.0
Q ss_pred ceeeeeEE-EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 12 NYKESLSG-IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 12 ~~l~~vs~-~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
..|+.+.. -+++|++++|+||||||||||++.+++ .+ ..+.++++. +..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~~-----------------~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVDT-----------------EGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEES-----------------SCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEEC-----------------CCCC----CHH-H
Confidence 34555553 689999999999999999999999998 32 233333322 1111 111 1
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHH--HHHHHHHHHHhhC-CCeEEecCCCC-CChhhH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE--RKRVALAVQTIIV-QSGFVPQHDLT-VDTLTV 166 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq--rqRv~lA~al~~~-p~llilDEPt~-lD~~~~ 166 (212)
+.-.... ..... +++++.+. +...|+++ +|++..+++++.+ |+++|+|||++ +|+...
T Consensus 62 ~~~~~~~---~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~ 123 (220)
T 2cvh_A 62 LVQMAET---RGLNP-------EEALSRFI--------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEEN 123 (220)
T ss_dssp HHHHHHT---TTCCH-------HHHHHHEE--------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGG
T ss_pred HHHHHHh---cCCCh-------HHHhhcEE--------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCc
Confidence 1110110 01111 12233221 23345553 5788888999986 99999999999 887432
Q ss_pred --------HHHHHHHHHHHhh
Q psy8250 167 --------HEHMTLMARLKMD 179 (212)
Q Consensus 167 --------~~~~~~l~~l~~~ 179 (212)
.++++.|+++.++
T Consensus 124 ~~~~~~~~~~~~~~L~~l~~~ 144 (220)
T 2cvh_A 124 RSGLIAELSRQLQVLLWIARK 144 (220)
T ss_dssp SSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666554
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.44 E-value=1.9e-13 Score=114.82 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=88.8
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCC
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~ 82 (212)
++++.|+... ++++|+ +|++++++|+||+||||++..|++.+.+ ..|+|.+.+.++.....
T Consensus 81 ~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~-------------- 141 (295)
T 1ls1_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAA-------------- 141 (295)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHH--------------
T ss_pred HHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhH--------------
Confidence 4666776543 788888 9999999999999999999999999887 58888887655421100
Q ss_pred CCCCHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC-CC-
Q psy8250 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD-LT- 160 (212)
Q Consensus 83 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP-t~- 160 (212)
. +.+ ..+.+..++.-..... ..+..+.+|.+|+.+...+++++|+||| +.
T Consensus 142 ----~-~ql---------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 142 ----R-EQL---------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQ 193 (295)
T ss_dssp ----H-HHH---------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred ----H-HHH---------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 0 000 0112334554321111 1234456789999988899999999999 66
Q ss_pred CChhhHHHHHHHHHHHH
Q psy8250 161 VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 161 lD~~~~~~~~~~l~~l~ 177 (212)
+|.....++.++...+.
T Consensus 194 ~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 194 IDEPLMGELARLKEVLG 210 (295)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHhhhcC
Confidence 89888888877766654
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=2.9e-15 Score=130.45 Aligned_cols=160 Identities=12% Similarity=0.118 Sum_probs=106.3
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHc------------CCCCCCceEEEECCEeCCcc----cccceE---EEEcCCCC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQ------------RIQGDVDGQILLNGLEVEKN----LMVKVS---GFVPQHDL 80 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g------------~~~p~~~G~I~~~g~~~~~~----~~~~~i---~~v~Q~~~ 80 (212)
.+.+|..+||+|+||||||||+++|+| ...| ..|.+.+.|..+... ..++.+ .++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p-~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP-EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT-TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc-eeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 467899999999999999999999999 4456 699999988543210 112222 47778888
Q ss_pred CCCCCCHHHHH--HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCC--CeEEec
Q psy8250 81 TVDTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQ--SGFVPQ 156 (212)
Q Consensus 81 ~~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p--~llilD 156 (212)
++...+..+++ .|...++. ++.++..++.. .+..+..+|++. +| ++.++|
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhch
Confidence 88777765544 33222211 01111111111 134444566653 89 999999
Q ss_pred CCCC-CChhhHHHHHHHHHHH-HhhcC---cchHHHHHHH---H-HHHHhc-CeeecCCc
Q psy8250 157 HDLT-VDTLTVHEHMTLMARL-KMDRN---LHHVERARTV---D-ALLKEL-GLLKCRPA 206 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l-~~~~~---~h~~~~~~~~---~-~~l~~g-~~~~~~~~ 206 (212)
||+. +|+...+..++.+.++ ..... +|.++.+... . ..|.+| +.+..++.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999 8999999999988887 44321 6877665442 2 378899 88877753
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.41 E-value=2.7e-17 Score=130.52 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=29.9
Q ss_pred HHH-HHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHh
Q psy8250 142 LAV-QTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 142 lA~-al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~ 178 (212)
.|+ +++.+|++++||||++ +|..+.+.+.+.|.+...
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455 6788888999999999 999888888887777643
No 146
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.41 E-value=1.5e-17 Score=138.23 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=91.9
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~ 78 (212)
+++.+.|++..+++++++.+++| ++|+||||||||||+++|++... .|.|.+++.++... ...+.+++++|.
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 35566777777899999999999 89999999999999999999763 68899988665221 122345677776
Q ss_pred CC-CCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 79 DL-TVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 79 ~~-~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
.. ..+.+++.|++......... ......+....+..+ ..+|||||+||+.+++|+..+|++ +|
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 43 45566777777543221100 000011222223333 245899999999999999999987 56
Q ss_pred CC
Q psy8250 157 HD 158 (212)
Q Consensus 157 EP 158 (212)
++
T Consensus 193 ~~ 194 (278)
T 1iy2_A 193 PA 194 (278)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.40 E-value=4.1e-14 Score=125.96 Aligned_cols=54 Identities=15% Similarity=-0.009 Sum_probs=49.9
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~ 64 (212)
.+..+|+++||+|++ ++++|+||||||||||+++|+|++.| ++|+|.++|+++.
T Consensus 15 ~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~~~ 68 (483)
T 3euj_A 15 INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-DLTLLNFRNTTEA 68 (483)
T ss_dssp EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-CTTTCCCCCTTSC
T ss_pred eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEEcc
Confidence 446789999999999 99999999999999999999999998 6999999998764
No 148
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=2.5e-13 Score=115.69 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=64.3
Q ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCCceEEEECCEeCCcc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQ-RIQGDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 103 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g-~~~p~~~G~I~~~g~~~~~~-~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 103 (212)
.+.|.||||+|||||+++|++ ++.| ..|.+.++|.+.... .....+++++|.+.+....+-. . ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~ 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP-GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------G---NN 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT-TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-CCCeEEecceeecccccccceeeeecccceEEecHhhc---------C---Cc
Confidence 389999999999999999999 6777 699999998776432 2244577888765432111100 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHHHHh
Q psy8250 104 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKM 178 (212)
Q Consensus 104 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~l~~ 178 (212)
... .+.+.++.+......+... .||| +..+|+++|+|||+++|+.++..+++.|.+...
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred chH----HHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 110 1223333322111111111 5666 788999999999999999999999999987643
No 149
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.39 E-value=1.7e-17 Score=135.81 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=91.2
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQH 78 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~ 78 (212)
+++.+.|++..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.++... ...+.+++++|.
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 34566677777899999999999 89999999999999999999763 68899888665221 122345677776
Q ss_pred CC-CCCCCCHHHHHHHHHhhhccc-CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec
Q psy8250 79 DL-TVDTLTVHEHMTLMARLKMDR-NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ 156 (212)
Q Consensus 79 ~~-~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD 156 (212)
.. ..+.+++.|++.......... .....+....+..++ ..|||||+||+.+++|+..+|++ +|
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CC
Confidence 42 445566777774432211100 001112222233333 35789999999999999999987 56
Q ss_pred CCC
Q psy8250 157 HDL 159 (212)
Q Consensus 157 EPt 159 (212)
++.
T Consensus 169 ~~l 171 (254)
T 1ixz_A 169 PAL 171 (254)
T ss_dssp GGG
T ss_pred HHH
Confidence 653
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.39 E-value=3.4e-13 Score=104.55 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=64.6
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhh
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 97 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~ 97 (212)
+|.+.+|+.++|+||||+|||||+++|++.+.| .+|.. +.| .++.+.+.....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~---------------~~~----------~~~~~~~~~~~~- 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIR---------------GYF----------FDTKDLIFRLKH- 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCC---------------CCE----------EEHHHHHHHHHH-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCe---------------EEE----------EEHHHHHHHHHH-
Confidence 456788999999999999999999999998865 34421 011 123332221110
Q ss_pred hcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC--CChhhHHHHHHHHHH
Q psy8250 98 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMAR 175 (212)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~--lD~~~~~~~~~~l~~ 175 (212)
....-. .. -+...+.+|++||+|||++ +|+..+..+.+++.+
T Consensus 85 -----------------~~~~~~-----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 85 -----------------LMDEGK-----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp -----------------HHHHTC-----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred -----------------HhcCch-----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 000000 00 1122345999999999995 899999999999988
Q ss_pred HHhh
Q psy8250 176 LKMD 179 (212)
Q Consensus 176 l~~~ 179 (212)
...+
T Consensus 129 ~~~~ 132 (180)
T 3ec2_A 129 RYNN 132 (180)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7654
No 151
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.35 E-value=4.8e-15 Score=135.73 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=105.7
Q ss_pred cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC
Q psy8250 4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83 (212)
Q Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~ 83 (212)
++..||...+++++++.+.+|+.++|+||||+|||||+++|++++.+...|.+.+++.+... ....++++|+...-
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~-- 115 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE--NMPRIKTVPACQGR-- 115 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT--TSCEEEEEETTHHH--
T ss_pred cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc--cCCcEEEEecchHH--
Confidence 44557778899999999999999999999999999999999999987434888888776543 23457888774310
Q ss_pred CCCHHHHHHHHHhhhccc-CC---------------------CHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250 84 TLTVHEHMTLMARLKMDR-NL---------------------HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 84 ~ltv~e~l~~~~~~~~~~-~~---------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~ 141 (212)
.+.+............ .. .............+.+|..+......+.+|+|++|++.
T Consensus 116 --~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 116 --RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVE 193 (604)
T ss_dssp --HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEE
T ss_pred --HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccccccc
Confidence 0111111100000000 00 00000000001122233222222333679999999999
Q ss_pred HHHHHhhCCCeEEecCCCCCChhhHHHHHHHHHH
Q psy8250 142 LAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMAR 175 (212)
Q Consensus 142 lA~al~~~p~llilDEPt~lD~~~~~~~~~~l~~ 175 (212)
.++....++.+|++||...+++..+..+++.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhhCCHHHHHHHHHHHHc
Confidence 9999999999999999999999888888888864
No 152
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=9e-13 Score=106.20 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHc--CCCC----CCceEEEECCEe
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQ--RIQG----DVDGQILLNGLE 62 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g--~~~p----~~~G~I~~~g~~ 62 (212)
-+++|++++|+||||||||||++.|++ ...| ...|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 4443 125666666543
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.30 E-value=9.4e-14 Score=109.43 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=47.9
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc---cccceEEEEcCCCCCCCCCCHHHH
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~---~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+..++.. ..+..++|+||++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 5778899999999999999999999999985 3 366777665432 124457899998766555554443
No 154
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.28 E-value=6e-14 Score=113.68 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=41.9
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCc-----------ccccceEEEEcCC
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-----------NLMVKVSGFVPQH 78 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~-----------~~~~~~i~~v~Q~ 78 (212)
++++.+ ++++|+||||||||||+++|+|++.| ++|+|.++|.++.. ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc-CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566776 89999999999999999999999999 69999999987721 1134568999874
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.18 E-value=1.2e-11 Score=96.62 Aligned_cols=36 Identities=8% Similarity=-0.071 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHH
Q psy8250 138 KRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMAR 175 (212)
Q Consensus 138 qRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~ 175 (212)
+.+.+|++++.+|+++++| +| +|..+..++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 88 999999999988865
No 156
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=2.4e-11 Score=104.90 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=51.0
Q ss_pred CCCCCCChHHHHHH------HHHHHHhhC-CCeEEecCCCC-CChhhHHHHHHHHHHHHhhc----CcchHH
Q psy8250 127 SVLNVLSGGERKRV------ALAVQTIIV-QSGFVPQHDLT-VDTLTVHEHMTLMARLKMDR----NLHHVE 186 (212)
Q Consensus 127 ~~~~~LSgGqrqRv------~lA~al~~~-p~llilDEPt~-lD~~~~~~~~~~l~~l~~~~----~~h~~~ 186 (212)
.++..|||||+||+ ++|++|+.+ |+++||||||+ ||+..+..+.+.|.++.... +||+.+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 45678999999988 567888999 99999999999 99999999999998874322 378865
No 157
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.16 E-value=6.9e-11 Score=103.13 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=31.9
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHH--HcCCCCCCc-----eEEEECCEe
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACI--SQRIQGDVD-----GQILLNGLE 62 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i--~g~~~p~~~-----G~I~~~g~~ 62 (212)
-|++|++++|+||||||||||++.+ .+..++ .. +.+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~-~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPL-DIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc-ccCCCCCcEEEEeCCC
Confidence 4789999999999999999999944 555544 23 366666543
No 158
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.13 E-value=1.9e-11 Score=109.83 Aligned_cols=164 Identities=14% Similarity=0.112 Sum_probs=97.1
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe-CCcccccceEEEEcCCCC----------
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE-VEKNLMVKVSGFVPQHDL---------- 80 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~-~~~~~~~~~i~~v~Q~~~---------- 80 (212)
.+++++++.+++|++++|+||||||||||+++|+|+++| .+|.|.+.|.. +.. .....++++.|...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHHH
Confidence 467889999999999999999999999999999999988 69999998864 221 11223444444322
Q ss_pred ------------CCCCCCHHHHHHHHHhhh-cccCCCHHHHHHHHHHHHHHcCC-----cc----ccC---CCCCCCChH
Q psy8250 81 ------------TVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGL-----LK----CKN---SVLNVLSGG 135 (212)
Q Consensus 81 ------------~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl-----~~----~~~---~~~~~LSgG 135 (212)
++.+++..|++.+..... ....+.. .....+.++++++.. .. ..+ .....+|+|
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 123455555544432221 1000000 000112333444322 11 112 233468999
Q ss_pred HHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHHhh-------cCcchHHHHHH
Q psy8250 136 ERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMD-------RNLHHVERART 190 (212)
Q Consensus 136 qrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~~~-------~~~h~~~~~~~ 190 (212)
|+||.++|.+ | ++ +|+.....+++.+.++..+ ..+|++++++.
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999877521 6 66 8887766666555555332 13688887654
No 159
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.12 E-value=1.2e-11 Score=99.61 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=23.3
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH-cCCCC
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRIQG 50 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~-g~~~p 50 (212)
+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 98743
No 160
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.09 E-value=4.8e-14 Score=122.22 Aligned_cols=138 Identities=11% Similarity=0.012 Sum_probs=82.2
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCC-CCCCCCHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEH 90 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~-~~~~ltv~e~ 90 (212)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+..-. .........++++||... ++.+.+....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~--~~~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVN--LPLDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCS--SCTTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEe--ccchhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 588999999999999999999999999999999984 367765511 111111223566676643 2222222111
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHH---HcCCc-------------cccCCCCCCCChHHHHHHHHHHHHhhCCCeEE
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLK---ELGLL-------------KCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~-------------~~~~~~~~~LSgGqrqRv~lA~al~~~p~lli 154 (212)
+ .+.............+...+. .+.++ ...+.....+++|+++|+..+++++..|++++
T Consensus 231 ~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli 305 (377)
T 1svm_A 231 E-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH 305 (377)
T ss_dssp T-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH
T ss_pred H-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE
Confidence 0 000000000000112223332 00011 12345567799999999999888888898888
Q ss_pred -ecCCCC
Q psy8250 155 -PQHDLT 160 (212)
Q Consensus 155 -lDEPt~ 160 (212)
||+|+.
T Consensus 306 yLd~~~~ 312 (377)
T 1svm_A 306 CLERSEF 312 (377)
T ss_dssp HHHTCTH
T ss_pred EEeCCHH
Confidence 898887
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.09 E-value=4.5e-10 Score=96.83 Aligned_cols=145 Identities=15% Similarity=0.201 Sum_probs=87.2
Q ss_pred CCcE-EEEECCCCccHHHHHHHHHcCCC-----------CCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 23 SGSL-LAIMGPSGAGKTTLLACISQRIQ-----------GDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 23 ~Ge~-~~iiGpnGaGKSTLl~~i~g~~~-----------p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.|-. ++|+|++|||||||++.|+|... + ..|.|.++|.++ .+....|++.+.|.. .+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~-~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lve~f 248 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP-KRYAIPINNRKI---MLVDTVGFIRGIPPQ----IVDAF 248 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCS-CEEEEEETTEEE---EEEECCCBCSSCCGG----GHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC-EEEEEEECCEEE---EEEeCCCchhcCCHH----HHHHH
Confidence 3444 99999999999999999999765 3 468888888654 223334555543211 12111
Q ss_pred HHHHHhhhc-------c--cCCC--HHHHHHHHHHHHHHcCCcccc----CCCCCCCChHHHHHHHHH----HHH-hhCC
Q psy8250 91 MTLMARLKM-------D--RNLH--HVERARTVDALLKELGLLKCK----NSVLNVLSGGERKRVALA----VQT-IIVQ 150 (212)
Q Consensus 91 l~~~~~~~~-------~--~~~~--~~~~~~~~~~~l~~~gl~~~~----~~~~~~LSgGqrqRv~lA----~al-~~~p 150 (212)
-.....+.. . .... ..+....+.++++.+++.+.. ..++..+|+++++++.++ +++ ..+|
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 000011100 0 0111 122233456778887765432 345677898898988887 454 3334
Q ss_pred CeEEecCCCC-CChhhHHHHHHHHHHHHhh
Q psy8250 151 SGFVPQHDLT-VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 151 ~llilDEPt~-lD~~~~~~~~~~l~~l~~~ 179 (212)
++ +|+| +|..+...+++.|.++...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 44 8999 9999999999998886544
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.05 E-value=7.3e-12 Score=98.24 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250 140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 140 v~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~~l~ 177 (212)
...|++++.+|.+.++| +| +|..+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 88 99999999998876643
No 163
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.03 E-value=6.1e-12 Score=99.27 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=47.2
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc--ccceEEEEcCCCCCCCCCCHHHH
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~--~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
+.-.-.+..++|++++|+||||||||||+++|++.+ |.+.+++.++.... .+..+++++|++..++.+++.++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 343444667889999999999999999999999854 77889887764321 12235778876544444455555
Q ss_pred HHH
Q psy8250 91 MTL 93 (212)
Q Consensus 91 l~~ 93 (212)
+..
T Consensus 93 ~~~ 95 (200)
T 4eun_A 93 WMD 95 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 164
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.03 E-value=9.7e-11 Score=90.57 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=68.9
Q ss_pred Cccee--eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCE--eC-C------cccccceEEEEcCC
Q psy8250 10 DTNYK--ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL--EV-E------KNLMVKVSGFVPQH 78 (212)
Q Consensus 10 ~~~~l--~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~--~~-~------~~~~~~~i~~v~Q~ 78 (212)
+...+ +++++++.+| +++|+||||||||||+++|.+++.+ ..|.....+. ++ . .......+.+++|+
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~ 88 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG-LSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNN 88 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC-CCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEEC
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC-CcccccccccchheeecccccCCCCceEEEEEEEeC
Confidence 33456 7899999999 9999999999999999999998876 3443222111 11 0 00123457888887
Q ss_pred CCCC--C---CCCHHHHHHHH-Hh-hhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHH
Q psy8250 79 DLTV--D---TLTVHEHMTLM-AR-LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141 (212)
Q Consensus 79 ~~~~--~---~ltv~e~l~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~ 141 (212)
+... + .+++...+.-. .. +..+ + .......+.++++.+++.+.. +.-++.|+.+++.
T Consensus 89 ~~~~~~~~~~~~~i~r~~~~~~~~~~~i~-g--~~~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~ 152 (182)
T 3kta_A 89 EDRGFPIDEDEVVIRRRVYPDGRSSYWLN-G--RRATRSEILDILTAAMISPDG---YNIVLQGDITKFI 152 (182)
T ss_dssp TTCCSSSSSSEEEEEEEECTTSCEEEEET-T--EEECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH
T ss_pred CCcccccCCcEEEEEEEEEeCCcEEEEEC-C--eEcCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH
Confidence 5321 1 12221111000 00 0000 0 011235677888889886531 2345666666553
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.01 E-value=4.9e-12 Score=113.38 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=88.7
Q ss_pred eeeEEEEcCCcEEEEECCCCccHHHHHHHHHc--CCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCC--CCCHHHH
Q psy8250 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD--TLTVHEH 90 (212)
Q Consensus 15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g--~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~--~ltv~e~ 90 (212)
+.+++++.++..+.|.|++||||||++++|.. +..+ ..|++.+.+.+.....+.. | ..-|.+.. .....+-
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~-~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA-QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC-CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 35788999999999999999999999999875 3444 3566766555543211110 0 00011110 0112221
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccC---CCCCCCChHHHHHH----------HHHHHHhhCCC-eEEec
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN---SVLNVLSGGERKRV----------ALAVQTIIVQS-GFVPQ 156 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~LSgGqrqRv----------~lA~al~~~p~-llilD 156 (212)
...... ...+..++ .+++..+|+.+... +....+|+||+|+. .+|+++...|. ++++|
T Consensus 233 ~~~L~~-------~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 233 ANALRW-------CVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH-------HHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH-------HHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 111111 12344555 37788888865422 22345788887752 35566777887 89999
Q ss_pred CCCC-CChhhHHHHHHHHHHHHhh
Q psy8250 157 HDLT-VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 157 EPt~-lD~~~~~~~~~~l~~l~~~ 179 (212)
|+.+ ++. ....+.++|.++.+.
T Consensus 305 E~~~ll~~-~~~~~~~~l~~Lar~ 327 (512)
T 2ius_A 305 EFADLMMT-VGKKVEELIARLAQK 327 (512)
T ss_dssp THHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHhh-hhHHHHHHHHHHHHH
Confidence 9999 763 345666777766543
No 166
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.00 E-value=1.5e-09 Score=91.04 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=65.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhccc
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR 101 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~ 101 (212)
.+|++++++|||||||||+++.|++.+.+ .+| +.+.++.+++. ..+..+.+.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTC---------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcC---------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 57999999999999999999999998876 467 12556666552 2345555543221
Q ss_pred CCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC-CChhhHHHHHHHHH
Q psy8250 102 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMA 174 (212)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~-lD~~~~~~~~~~l~ 174 (212)
..|+..... .+ +..-+.+++ .+.+|+++|+| |+ +|+.....+.++.+
T Consensus 159 ----------------~~gl~~~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 ----------------LLQAPLEVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTCCCCBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------hcCCCeEec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 123321110 12 233355555 45999999999 66 77766555554443
No 167
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.95 E-value=4.4e-11 Score=97.96 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=47.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHH---cCCCCCCceEEE--------ECCEeCCc----ccccceEEEEcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACIS---QRIQGDVDGQIL--------LNGLEVEK----NLMVKVSGFVPQH 78 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~---g~~~p~~~G~I~--------~~g~~~~~----~~~~~~i~~v~Q~ 78 (212)
.+|++++|+|||||||||++++|+ |+..+ ++|.|+ .+|.++.. ..+++.+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~-d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL-DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE-EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC-CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 789999999999999999999999 98888 699999 88887742 1345567888864
No 168
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.95 E-value=4.5e-13 Score=120.00 Aligned_cols=136 Identities=14% Similarity=0.159 Sum_probs=87.2
Q ss_pred cccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCccc---ccceEEEEcCCCC
Q psy8250 4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL---MVKVSGFVPQHDL 80 (212)
Q Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~---~~~~i~~v~Q~~~ 80 (212)
+...|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++.... ..+.+..+||...
T Consensus 46 lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~ 120 (499)
T 2dhr_A 46 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAK 120 (499)
T ss_dssp HHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS
T ss_pred HHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHH
Confidence 444555667888999999999 89999999999999999999763 678899887764321 1233556777653
Q ss_pred -CCCCCCHHHHHHHHHhhhcc-cCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCC
Q psy8250 81 -TVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHD 158 (212)
Q Consensus 81 -~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEP 158 (212)
..+...+.|++......... ......+....+..++. .||||++|+..+++|...+|++ ||||
T Consensus 121 ~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 33444555555321111000 00012233333444443 3678888888888888888876 7876
Q ss_pred C
Q psy8250 159 L 159 (212)
Q Consensus 159 t 159 (212)
.
T Consensus 186 L 186 (499)
T 2dhr_A 186 L 186 (499)
T ss_dssp T
T ss_pred c
Confidence 5
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.94 E-value=5.1e-11 Score=97.76 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=36.3
Q ss_pred Cccc-cccc-CCcceeeeeEEEEcC---CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 1 METF-HPLF-GDTNYKESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 1 ~~~l-~~~~-~~~~~l~~vs~~i~~---Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++++ ++.| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred EcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578 9999 778899999999999 9999999999999999999999854
No 170
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.94 E-value=2.1e-10 Score=90.08 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=29.3
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG 54 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G 54 (212)
+++.+|++++|+|||||||||++++|++.+.| ..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeE
Confidence 46889999999999999999999999998866 455
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.93 E-value=1.8e-10 Score=101.99 Aligned_cols=150 Identities=12% Similarity=0.041 Sum_probs=87.5
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEEECCEeCCcccccce-EEEEcCCCCCCCCCCHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QILLNGLEVEKNLMVKV-SGFVPQHDLTVDTLTVH 88 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~~~g~~~~~~~~~~~-i~~v~Q~~~~~~~ltv~ 88 (212)
...|+++..-+.+|+++.|.|++|+|||||+..+++...+ ..| .|.+.+.+.+...+..+ .+.... ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 3467888877999999999999999999999999986654 234 34443333221111110 000000 000
Q ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHh--hCCCeEEecCCCC-CChh-
Q psy8250 89 EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTI--IVQSGFVPQHDLT-VDTL- 164 (212)
Q Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~--~~p~llilDEPt~-lD~~- 164 (212)
+. +.. ..+. .+...++.++++.++..+..-.....+|.++.+ ..+++++ .+|+++++|+++. .+..
T Consensus 261 ~~------l~~-g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~ 330 (454)
T 2r6a_A 261 QN------LRT-GKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR 330 (454)
T ss_dssp HH------HHT-SCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred HH------Hhc-CCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence 00 000 0122 223345556666665444333335679999887 5667776 6799999999999 5321
Q ss_pred -------hHHHHHHHHHHHHhh
Q psy8250 165 -------TVHEHMTLMARLKMD 179 (212)
Q Consensus 165 -------~~~~~~~~l~~l~~~ 179 (212)
...++...|+.++++
T Consensus 331 ~~~~~~~~i~~i~~~Lk~lAke 352 (454)
T 2r6a_A 331 SKENRQQEVSEISRSLKALARE 352 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 224556666766655
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.90 E-value=5.2e-11 Score=93.87 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=47.0
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE--EECCEeCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI--LLNGLEVE 64 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I--~~~g~~~~ 64 (212)
++++..++.....+..++..++|++++|+|||||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhh
Confidence 467777788888888888889999999999999999999999999875 36877 88876653
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.86 E-value=4.1e-10 Score=87.77 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998864
No 174
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.86 E-value=3.9e-10 Score=95.61 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=61.9
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcc-------cc-----cceEEEE-cCCCC
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-------LM-----VKVSGFV-PQHDL 80 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~-------~~-----~~~i~~v-~Q~~~ 80 (212)
+++++|.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.++... .+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3689999999999999999999999999999999887 589999987776421 12 4468888 77655
Q ss_pred CCCCCCHHHHHHHH
Q psy8250 81 TVDTLTVHEHMTLM 94 (212)
Q Consensus 81 ~~~~ltv~e~l~~~ 94 (212)
..+..++++++...
T Consensus 174 ~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 174 ADPASVVFDAIKKA 187 (320)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555666776654
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.85 E-value=1.6e-09 Score=92.82 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=25.9
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888876443
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.71 E-value=4.2e-09 Score=81.56 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.9
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~ 58 (212)
.+|++++|+||||||||||+++|++.+++...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3689999999999999999999999875323555544
No 177
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.71 E-value=7.7e-10 Score=93.81 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=40.9
Q ss_pred cccccCCcceeeeeEEEEcCCc------EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 4 FHPLFGDTNYKESLSGIAESGS------LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 4 l~~~~~~~~~l~~vs~~i~~Ge------~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
++..|++...+++++..+..++ ++||+||||||||||+++|++++.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5667788888899998888877 999999999999999999999876
No 178
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=7.8e-09 Score=81.22 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=24.7
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
...+++||||++.+|++++|+||+||||||+.+.|+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345899999999999999999999999999999999755
No 179
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=2.4e-07 Score=74.14 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=32.3
Q ss_pred eeeee-EEEEcCCcEEEEECCCCccHHHHHHHH-HcCCCCCCceEEEECC
Q psy8250 13 YKESL-SGIAESGSLLAIMGPSGAGKTTLLACI-SQRIQGDVDGQILLNG 60 (212)
Q Consensus 13 ~l~~v-s~~i~~Ge~~~iiGpnGaGKSTLl~~i-~g~~~p~~~G~I~~~g 60 (212)
.|+.+ ..-+++|++++|.||||||||||+..+ .+.... ..+.++++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~ 59 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL 59 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 45555 556899999999999999999996554 443333 234444443
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.65 E-value=8.9e-09 Score=91.65 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=30.2
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+...++++++.+++| +.|+||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3334566677777777 7899999999999999999843
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.63 E-value=2.3e-07 Score=79.37 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=40.7
Q ss_pred CcccccccCC---cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC--CCCCCceEEEECCE
Q psy8250 1 METFHPLFGD---TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGL 61 (212)
Q Consensus 1 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~--~~p~~~G~I~~~g~ 61 (212)
|+++.+.|+. ..+|++++++++ .++|+|++|||||||++.|+|. +++ .+|.++....
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~-~~~~vT~~p~ 72 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPR-GSGIVTRRPL 72 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCC-CSSSCCCSCE
T ss_pred HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCC-CCCcccCcce
Confidence 4677777764 358999999998 8999999999999999999994 444 4666554443
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.60 E-value=1.1e-08 Score=82.31 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=35.0
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
+.+.++|++++|.|+||||||||+++|++. .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 344588999999999999999999999985 57788887764
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=4.2e-08 Score=77.65 Aligned_cols=29 Identities=34% Similarity=0.577 Sum_probs=27.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
++|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999998765
No 184
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.55 E-value=1e-08 Score=80.83 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=36.0
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
..+|++++|+|+||||||||+++|++.+.+ ..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCc
Confidence 578999999999999999999999998877 578887765543
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.54 E-value=7.3e-08 Score=82.18 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=75.8
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
..|+.+..-+.+|+++.|.|++|+|||||+..++..... ..+. +.|+. .+++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~----------------Vl~fS------lEms~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRG----------------VAVFS------LEMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCE----------------EEEEE------SSSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCe----------------EEEEe------CCCCHHHHH
Confidence 456666666899999999999999999999888764321 1112 23332 123443322
Q ss_pred HHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHHH
Q psy8250 92 TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMT 171 (212)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~~ 171 (212)
. ++......+.+....+ +.||.++.+|+..|...+.+++++|.|+|.. + ..++..
T Consensus 91 ~------------------Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~-s---i~~i~~ 145 (338)
T 4a1f_A 91 L------------------RALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYV-R---IEQIRL 145 (338)
T ss_dssp H------------------HHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTC-C---HHHHHH
T ss_pred H------------------HHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC-c---HHHHHH
Confidence 1 1111111122222211 4799999999999999999999999999865 1 225555
Q ss_pred HHHHHHhh
Q psy8250 172 LMARLKMD 179 (212)
Q Consensus 172 ~l~~l~~~ 179 (212)
.+++++.+
T Consensus 146 ~ir~l~~~ 153 (338)
T 4a1f_A 146 QLRKLKSQ 153 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666544
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=3e-08 Score=78.40 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.7
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999998764
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.53 E-value=3.1e-09 Score=90.66 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=48.2
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
+..+.|+...+++++++.+.+|.+++|+|++|||||||++.|++.+.+ ..|++.+-+.+
T Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d 93 (341)
T 2p67_A 35 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVD 93 (341)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence 445567777789999999999999999999999999999999988765 46666554443
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.49 E-value=3.3e-08 Score=75.69 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=31.5
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
.+|++++|+|||||||||++++|++.+ |.+++++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 569999999999999999999999853 6677877655
No 189
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.47 E-value=3.2e-08 Score=89.56 Aligned_cols=43 Identities=33% Similarity=0.460 Sum_probs=37.4
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce-EEE-ECCEeC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG-QIL-LNGLEV 63 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G-~I~-~~g~~~ 63 (212)
.+.+|++++|+|+||||||||+++|++.+.| .+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHH
Confidence 4789999999999999999999999999988 465 674 888654
No 190
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.46 E-value=1e-08 Score=92.69 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=47.3
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
++.+.|+...++.++++++ +|++++|+||||+|||||+++|++.+.+ ..|.|.+.|..
T Consensus 88 ~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~~~ 145 (543)
T 3m6a_A 88 KVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC--
T ss_pred HHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecccc
Confidence 4455566666788888888 8999999999999999999999999877 58888887743
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.42 E-value=1.5e-07 Score=88.42 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCC--CChhhHHHHHHHHHHHHhhc------CcchHHHH
Q psy8250 126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEHMTLMARLKMDR------NLHHVERA 188 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~--lD~~~~~~~~~~l~~l~~~~------~~h~~~~~ 188 (212)
+..+.-+|.|+.+|..++++++.+++++|+|||.. +|......++..+....... .||+.+..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l 255 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF 255 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence 34456789999999999999999999999999995 67666555555444433221 26765544
No 192
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.39 E-value=1.2e-07 Score=81.12 Aligned_cols=111 Identities=10% Similarity=0.001 Sum_probs=67.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhhhcccC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN 102 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~ 102 (212)
..-.++++|++|+|||||++.++|.. + ..| +.+.... ...++.+.+... .+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~-~~~-----~~~~~t~--~~~~~~~~~~~~---------------~~~---- 217 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-P-EIA-----SYPFTTR--GINVGQFEDGYF---------------RYQ---- 217 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-C-EEE-----CCTTCSS--CEEEEEEEETTE---------------EEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C-ccC-----CCCCeee--ceeEEEEEecCc---------------eEE----
Confidence 45579999999999999999999854 2 111 1111111 112333332210 000
Q ss_pred CCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEec-CCCC-CChhhHHHHHHHHHHHH
Q psy8250 103 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQ-HDLT-VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 103 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilD-EPt~-lD~~~~~~~~~~l~~l~ 177 (212)
.++.....+..+..+|++++|++. +.+...++-++++| +|.. +|......+++.+....
T Consensus 218 ---------------l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~ 278 (357)
T 2e87_A 218 ---------------IIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278 (357)
T ss_dssp ---------------EEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT
T ss_pred ---------------EEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc
Confidence 001111223456678999998876 55555677889999 9888 88888877777666543
No 193
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.37 E-value=2.2e-07 Score=69.96 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=26.1
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34556666665 899999999999999999873
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.35 E-value=1.6e-08 Score=80.41 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=41.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC---CCCCceEEEE--------CCEeCCc----ccccceEEEEcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI---QGDVDGQILL--------NGLEVEK----NLMVKVSGFVPQHD 79 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~---~p~~~G~I~~--------~g~~~~~----~~~~~~i~~v~Q~~ 79 (212)
.+.+++|+|||||||||+.++|++.+ .+ ++|.+.. +|.++.. ..+.+.+++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~-d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLL-DSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEE-EHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc-cCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35689999999999999999999865 45 5888876 6666542 12345577777753
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.34 E-value=1.8e-07 Score=71.19 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.33 E-value=7.4e-08 Score=82.69 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=49.3
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-EECCEeCCcccccceEEEEcCCCCCCCCCCHHHHH
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM 91 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~l 91 (212)
=+++|+++.|.||+|||||||+..++....+ ..|.+ ++++.......+.+.+++.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 3789999999999999999999999987765 46655 66665443333445567666665444444555443
No 197
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.28 E-value=3.9e-08 Score=84.55 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=35.9
Q ss_pred cccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN 59 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~ 59 (212)
.+++..|+.+.++++++|+| +|+|+||+|||||++.|.+...+ ..+.+...
T Consensus 21 ~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~-~~~~~~~~ 71 (361)
T 2qag_A 21 ANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERVIPGA 71 (361)
T ss_dssp CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC-CCCcccCC
Confidence 46677777778889999887 99999999999999999886544 34444333
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.28 E-value=1.3e-07 Score=83.08 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=47.0
Q ss_pred ccccccCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCC
Q psy8250 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64 (212)
Q Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~ 64 (212)
++++.|+... ++++|+ ++++++++|+|||||||++..|++.+.+ ..|+|.+.+.++.
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSS
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeecccc
Confidence 4566776554 678887 8999999999999999999999999987 5888888766653
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.25 E-value=1.7e-06 Score=73.63 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCc--EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 23 SGS--LLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 23 ~Ge--~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
.+. .+.|.||+|+|||||++.+++...+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456 8999999999999999999987765
No 200
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.25 E-value=1.3e-06 Score=76.72 Aligned_cols=146 Identities=13% Similarity=0.130 Sum_probs=71.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCCceEEEECCEeCC---cccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ------------GDVDGQILLNGLEVE---KNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~------------p~~~G~I~~~g~~~~---~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
.++|+|+||+|||||++.|+|... + ..|.+.++|.++. ....++..++.+|....+..++..++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~-~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP-VDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCc-eEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 799999999999999999999753 3 4789999998652 22233333444455444544444455
Q ss_pred HHHHHhh----hcccCCCHHHHHHHHHHHHHHcCCc-----cccCCCCC-CCChHHHHHHHHHHHHh--hCCCeEEecCC
Q psy8250 91 MTLMARL----KMDRNLHHVERARTVDALLKELGLL-----KCKNSVLN-VLSGGERKRVALAVQTI--IVQSGFVPQHD 158 (212)
Q Consensus 91 l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~-~LSgGqrqRv~lA~al~--~~p~llilDEP 158 (212)
+...... ........ ....+.+.+...+.. ...|..-. .-+.-+- .-.+++.+. ...+++ +
T Consensus 261 i~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred HhhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence 4432110 00011122 223455566665543 11221110 1111111 113334333 233443 3
Q ss_pred CC-CChhhHHHHHHHHHHHHhh
Q psy8250 159 LT-VDTLTVHEHMTLMARLKMD 179 (212)
Q Consensus 159 t~-lD~~~~~~~~~~l~~l~~~ 179 (212)
+| ..-....++++.+.+...+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 77 8888888888877665443
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.21 E-value=5.1e-07 Score=70.94 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=27.1
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
=++++|.+++|+|++||||||+.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 347889999999999999999999999865
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.19 E-value=3.5e-07 Score=78.26 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=33.6
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
.++.+++|+|++|||||||++.|+|.+.+ ..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecC
Confidence 35789999999999999999999998776 477777665543
No 203
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=1.2e-07 Score=79.42 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=45.0
Q ss_pred ccccccCCcceeee-eEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 3 TFHPLFGDTNYKES-LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 3 ~l~~~~~~~~~l~~-vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
++.+.|++.. ++ ++++.+ |++++++|+||+||||++..|++.+.+ ..++|.+.+.+.
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~ 136 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADV 136 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 4556676543 56 888876 999999999999999999999998876 477887765554
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.17 E-value=5.1e-06 Score=73.01 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g 60 (212)
++.+++++|||||||||++..|+..+.+ ..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 5889999999999999999999998876 466666543
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.15 E-value=4.6e-07 Score=69.58 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=31.6
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEV 63 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~ 63 (212)
.+|++++|+|++||||||+.+.|++.+.+ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHH
Confidence 47899999999999999999999997643 35 566665544
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.14 E-value=3.2e-06 Score=71.13 Aligned_cols=121 Identities=10% Similarity=0.057 Sum_probs=72.5
Q ss_pred cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeCCcccccceEEEEcCCCCCCCCCCHHHH
Q psy8250 11 TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEH 90 (212)
Q Consensus 11 ~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~~~~~~~~~i~~v~Q~~~~~~~ltv~e~ 90 (212)
...|+.+..-+.+|+++.|.|++|+|||||+..++..... .| . .+.|+.- +++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~--~g------~---------~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD--ND------D---------VVNLHSL------EMGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT--TT------C---------EEEEEES------SSCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cC------C---------eEEEEEC------CCCHHHH
Confidence 3456666666899999999999999999999888743221 22 1 1344422 2343332
Q ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEecCCCCCChhhHHHHH
Q psy8250 91 MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHM 170 (212)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llilDEPt~lD~~~~~~~~ 170 (212)
.. ++......+.+....+.. ..||.++++|+..|...+.++++++.|+|.. + ..++.
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~-~---~~~i~ 168 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQ-S---VNYIW 168 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCC-B---HHHHH
T ss_pred HH------------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCC-C---HHHHH
Confidence 21 111111111222222111 2389999999999999999999999999864 1 23344
Q ss_pred HHHHHHH
Q psy8250 171 TLMARLK 177 (212)
Q Consensus 171 ~~l~~l~ 177 (212)
..++++.
T Consensus 169 ~~i~~l~ 175 (315)
T 3bh0_A 169 SKTRQTK 175 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445544
No 207
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.14 E-value=1.4e-06 Score=68.83 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.4
Q ss_pred eeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45 (212)
Q Consensus 14 l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~ 45 (212)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556666665 99999999999999999985
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=4.4e-07 Score=76.88 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=43.1
Q ss_pred cccccccCCcceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy8250 2 ETFHPLFGDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
++++..+|...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3566677878899999999999998 999999999999999999998755
No 209
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.07 E-value=1.3e-06 Score=75.56 Aligned_cols=47 Identities=36% Similarity=0.444 Sum_probs=41.5
Q ss_pred cccccccCC-cceee--------------eeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 2 ETFHPLFGD-TNYKE--------------SLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 2 ~~l~~~~~~-~~~l~--------------~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++++.|.. +..++ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 137 e~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 137 ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 577888854 55788 899999999999999999999999999998864
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.07 E-value=1.4e-06 Score=70.16 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=30.1
Q ss_pred eeeeeEEEEc---CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEE
Q psy8250 13 YKESLSGIAE---SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58 (212)
Q Consensus 13 ~l~~vs~~i~---~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~ 58 (212)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+ .+.+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence 4677888876 8999999999999999999999987753 345543
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.07 E-value=7.3e-07 Score=70.44 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=36.6
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCce--EEEECCEeC
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG--QILLNGLEV 63 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G--~I~~~g~~~ 63 (212)
+.+.+|.+++|+|++||||||+.+.|++.+.| ..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECChHH
Confidence 34678999999999999999999999998876 477 788876443
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.00 E-value=3.1e-06 Score=66.26 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy8250 26 LLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g 46 (212)
+++|+|||||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 213
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.99 E-value=6.8e-06 Score=62.48 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 214
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.98 E-value=5.9e-06 Score=63.79 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=28.6
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CCC---CceEEEECCEeC
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QGD---VDGQILLNGLEV 63 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p~---~~G~I~~~g~~~ 63 (212)
.+++++++..++. .++++|++|+|||||++.+.+-. .|. ..+.+.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 4788999998877 67899999999999999999732 111 356777776443
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.95 E-value=8e-07 Score=82.17 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=33.7
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCC-CCceEEEECCEeC
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQG-DVDGQILLNGLEV 63 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p-~~~G~I~~~g~~~ 63 (212)
|+.++++..++|+|+||+|||||++.|++...+ ...|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 456789999999999999999999999975543 136777 566554
No 216
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.95 E-value=4.3e-06 Score=64.57 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=26.4
Q ss_pred eeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 16 ~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999864
No 217
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.94 E-value=2.4e-05 Score=64.49 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++..+.|.||+|+|||||.+++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999854
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.92 E-value=2.1e-06 Score=66.92 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=38.2
Q ss_pred ccCC-cceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC----CC---CCceEEEECCEe
Q psy8250 7 LFGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI----QG---DVDGQILLNGLE 62 (212)
Q Consensus 7 ~~~~-~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~----~p---~~~G~I~~~g~~ 62 (212)
.|++ ..+++++|+..++.+ ++++|++|+|||||++.+.+-. .| ...+.+.++|..
T Consensus 8 ~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -----CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 3444 358889998888875 7899999999999999998732 11 135677777644
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.92 E-value=4.8e-06 Score=65.29 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=25.6
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999998765
No 220
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.90 E-value=3.8e-06 Score=64.76 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=31.4
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEE-EECC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNG 60 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I-~~~g 60 (212)
..+|.+++|+|++||||||+.+.|+..+.+ ..+.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK-EGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEeeH
Confidence 467999999999999999999999987765 35555 4443
No 221
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.90 E-value=4.6e-06 Score=65.06 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy8250 26 LLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g 46 (212)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 222
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.86 E-value=2e-05 Score=59.25 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 223
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=1.4e-05 Score=61.03 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 224
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.83 E-value=9.5e-06 Score=69.69 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.2
Q ss_pred ceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~ 45 (212)
..+++..+++.+| +.+|+|||||||||++.+|.
T Consensus 14 r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 14 KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3457778888775 89999999999999999986
No 225
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.82 E-value=1.1e-05 Score=69.98 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=33.1
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcC-----------CCCCCceEEEECCE
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQR-----------IQGDVDGQILLNGL 61 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~-----------~~p~~~G~I~~~g~ 61 (212)
.+..|..++|+|+||+|||||++.|+|. ..| ..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p-~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP-NESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC-SEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc-eeEEEEECCc
Confidence 4678889999999999999999999997 445 4788877664
No 226
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.76 E-value=8.9e-06 Score=67.97 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHh--hCCCeEEecCCCC-CChhh-HHHHHHHHHHHHhh
Q psy8250 132 LSGGERKRVALAVQTI--IVQSGFVPQHDLT-VDTLT-VHEHMTLMARLKMD 179 (212)
Q Consensus 132 LSgGqrqRv~lA~al~--~~p~llilDEPt~-lD~~~-~~~~~~~l~~l~~~ 179 (212)
+|.|++ .+++++. ..|.++++ + +|... ...+.+.+.++++.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence 888886 4566666 67889988 7 88877 67777888887654
No 227
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.72 E-value=3.8e-06 Score=71.93 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=32.9
Q ss_pred ceeeeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCC
Q psy8250 12 NYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 12 ~~l~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+++.+++.+++|++ ++|+||+||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888999998 9999999999999999998854
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.72 E-value=8.8e-06 Score=65.90 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=31.3
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
.++++++.++.| +.|.||+|+|||||+++|++....+ -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHH
Confidence 345555555555 8899999999999999999876432 467776655
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.71 E-value=1.6e-05 Score=62.03 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.71 E-value=1.5e-05 Score=61.56 Aligned_cols=38 Identities=34% Similarity=0.340 Sum_probs=29.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC--CceEEEECCEe
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLE 62 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p~--~~G~I~~~g~~ 62 (212)
.+++|+|++|||||||++.|.+.+.+. ..|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999875431 24777776543
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.70 E-value=1.8e-05 Score=60.54 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=22.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
No 232
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.65 E-value=2.6e-05 Score=62.47 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.7
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=3.7e-05 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=4.7e-05 Score=57.80 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=22.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999765
No 235
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.56 E-value=2.9e-05 Score=63.01 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 567789999999999999999999998653 34567776544
No 236
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.55 E-value=3.9e-05 Score=58.66 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.51 E-value=5.9e-05 Score=57.65 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 238
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.49 E-value=7.4e-05 Score=59.74 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
.++|+|++|+|||||++.|+|...+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999997654
No 239
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.48 E-value=3.3e-05 Score=66.55 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEEC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN 59 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~ 59 (212)
.+..++|+||+||||||+++.+++...+ ..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEE
Confidence 5678999999999999999999987766 46777664
No 240
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=6.8e-05 Score=59.07 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHc
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.46 E-value=6.6e-05 Score=56.21 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHH
Q psy8250 26 LLAIMGPSGAGKTTLLACI 44 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i 44 (212)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.46 E-value=6.2e-05 Score=58.67 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.45 E-value=6.7e-05 Score=60.55 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999984
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.44 E-value=4.7e-05 Score=71.83 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
|.+.+|+.+.|+||||+|||||+++|++.+.. --+.+++.++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~l 274 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEI 274 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchHh
Confidence 35789999999999999999999999998754 2366665443
No 245
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.43 E-value=6.7e-05 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|+||||||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998744
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.43 E-value=6.4e-05 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
..+.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999863
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.41 E-value=8.4e-05 Score=57.38 Aligned_cols=23 Identities=48% Similarity=0.732 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999744
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.39 E-value=2.4e-05 Score=61.14 Aligned_cols=25 Identities=44% Similarity=0.627 Sum_probs=22.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
+++|.|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=8.1e-06 Score=67.62 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=36.5
Q ss_pred CCcceeeeeEEEEcCC-----------cEEEEECCCCccHHHHHHHHHcCCCCCCceE-EEEC
Q psy8250 9 GDTNYKESLSGIAESG-----------SLLAIMGPSGAGKTTLLACISQRIQGDVDGQ-ILLN 59 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~G-----------e~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~-I~~~ 59 (212)
|...+++.+...+..+ ..+.|.||+|+||||+.++|++.+.+ ..+. +.++
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~ 82 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRID 82 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEee
Confidence 5555666666665554 58999999999999999999998765 3553 3444
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.37 E-value=0.00012 Score=56.68 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.37 E-value=8.2e-05 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998644
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.37 E-value=0.00011 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.37 E-value=0.00048 Score=60.40 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=29.6
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.|+.+..-+.+|+++.|.|++|+|||||...++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455555458999999999999999999998887644
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=9.9e-05 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00012 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.32 E-value=0.00011 Score=60.86 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=28.9
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g 60 (212)
...+.++.|.||+||||||+.+.|+..+. .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 34578999999999999999999986442 35566765
No 257
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00031 Score=53.72 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=25.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC-----CCCCce----EEEECCEe
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI-----QGDVDG----QILLNGLE 62 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~-----~p~~~G----~I~~~g~~ 62 (212)
.++|+|++|+|||||++.+.+-. .| +.+ .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESP-EGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCT-TCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCC-CcceEEEEEEECCEE
Confidence 48999999999999997665532 33 345 55555544
No 258
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00014 Score=56.48 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
No 259
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.30 E-value=0.00021 Score=61.37 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC-----------CCCCceEEEECC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI-----------QGDVDGQILLNG 60 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~-----------~p~~~G~I~~~g 60 (212)
|-.++|+|.+|+|||||++.|++-. .| ..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p-~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP-NTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC-CSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc-eEEEEecCC
Confidence 3468999999999999999999832 34 467777765
No 260
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=56.36 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999874
No 261
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.28 E-value=0.00014 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 262
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.28 E-value=0.00012 Score=59.94 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999653
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.26 E-value=0.00015 Score=56.48 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
..|.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 264
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.25 E-value=0.00016 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988654
No 265
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00018 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.24 E-value=0.00016 Score=56.36 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.1
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+|.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.19 E-value=0.00017 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 268
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.19 E-value=0.0002 Score=55.55 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 269
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00022 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 270
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.17 E-value=0.00016 Score=57.85 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.1
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACIS 45 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~ 45 (212)
+.+|+.+++.||+||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999999999888765
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00022 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
-.++|+|++|+|||||++.+++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998653
No 272
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00022 Score=59.29 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=32.6
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEe
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~ 62 (212)
.+.++..+.|.||+|+|||||.++|++... .+-+.+++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~ 84 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPE 84 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHH
Confidence 467889999999999999999999998653 4567777544
No 273
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.14 E-value=0.00025 Score=59.63 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=32.1
Q ss_pred cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
+.....+++..+.+ .|.-++|.|+||+|||||...+.+
T Consensus 129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34456788888887 788999999999999999998876
No 274
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.12 E-value=0.00018 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=18.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00033 Score=55.19 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=22.8
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++|-+++|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.09 E-value=0.00027 Score=54.34 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.6
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+..+.+++|.|+.||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999999864
No 277
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.08 E-value=0.0003 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999954
No 278
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.07 E-value=0.00031 Score=51.93 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 279
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.00032 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998854
No 280
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00032 Score=54.93 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|.||.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 281
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.05 E-value=0.00034 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 282
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.05 E-value=0.00035 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.05 E-value=0.00032 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
No 284
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00038 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 285
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.04 E-value=0.00031 Score=55.65 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998533
No 286
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.03 E-value=0.00068 Score=53.40 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=28.5
Q ss_pred CcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 10 ~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
....+...-+.+ .|..+.|+||+|||||||...|+..
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 344566655554 5788999999999999999998753
No 287
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.00044 Score=53.62 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+-+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
No 288
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.02 E-value=0.00034 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 289
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.02 E-value=0.00034 Score=51.79 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998865
No 290
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.02 E-value=0.00042 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
...+++|.|+.||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
No 291
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.02 E-value=0.00041 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998644
No 292
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.01 E-value=0.00031 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.01 E-value=0.00038 Score=54.52 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+||.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.01 E-value=0.00042 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 295
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.01 E-value=0.00038 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998543
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.01 E-value=0.00025 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.++|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 297
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.01 E-value=0.00027 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|++|+|||||++.+.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00041 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 299
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.00 E-value=0.00048 Score=51.54 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.00 E-value=0.00036 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.00 E-value=0.00036 Score=51.58 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 302
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.99 E-value=0.00033 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 303
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.99 E-value=0.00042 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988754
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.99 E-value=0.00038 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 305
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.98 E-value=0.00038 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 306
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.00034 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 307
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.97 E-value=0.00033 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.+.++.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999854
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.00046 Score=58.54 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.7
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 309
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.96 E-value=0.00048 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 310
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.95 E-value=0.00036 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 311
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.95 E-value=0.00054 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987654
No 312
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.95 E-value=0.00061 Score=57.21 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.4
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.95 E-value=0.00035 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00038 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.0004 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 316
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.94 E-value=0.00038 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999864
No 317
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.93 E-value=0.00045 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 318
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.93 E-value=0.00051 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.-+++|.|+.||||||+.+.++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999853
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.92 E-value=0.0005 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
No 320
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.91 E-value=0.0005 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
.++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
No 321
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.91 E-value=0.00039 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 322
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.91 E-value=0.00048 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 323
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.91 E-value=0.00047 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 324
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.91 E-value=0.00014 Score=56.83 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=26.5
Q ss_pred eeeeeEEEEcCCc---EEEEECCCCccHHHHHHHHHcCC
Q psy8250 13 YKESLSGIAESGS---LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 13 ~l~~vs~~i~~Ge---~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++.+.-.+..|. .+.|.||+|+|||||++.++..+
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333433344454 79999999999999999998754
No 325
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.90 E-value=0.00051 Score=57.25 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.+.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999853
No 326
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.90 E-value=0.00039 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
No 327
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.90 E-value=0.00055 Score=50.79 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-.++++|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 328
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.90 E-value=0.00056 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.693 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.90 E-value=0.00048 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 330
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.89 E-value=0.00046 Score=53.40 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999997654
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.88 E-value=0.00056 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.88 E-value=0.00063 Score=54.76 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++-+++|.||.||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 333
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.88 E-value=0.00046 Score=59.30 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
No 334
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0004 Score=58.55 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.7
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998664
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.87 E-value=0.00028 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999874
No 336
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.87 E-value=0.00055 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999763
No 337
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.87 E-value=0.0003 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++-++||.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 338
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00062 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 339
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.00021 Score=59.94 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCcceeeeeEEEEcCC--cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 9 GDTNYKESLSGIAESG--SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~G--e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
|...+++.+.-.+..| ..+.|.||+|+||||+++.+++.+
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444555555556666 448999999999999999998864
No 340
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.84 E-value=0.00057 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 341
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.84 E-value=0.00058 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 342
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.84 E-value=0.00063 Score=56.78 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|+|+.|+|||||++.+.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 343
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.83 E-value=0.00065 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 344
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.82 E-value=0.00068 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.82 E-value=0.00066 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.++|+|+.|+|||||++.+.+...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.81 E-value=0.00051 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 347
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.81 E-value=0.00065 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 348
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.80 E-value=0.0005 Score=56.22 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999987743
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.80 E-value=0.00059 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 350
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.79 E-value=0.00065 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.78 E-value=0.00064 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|||||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.78 E-value=0.00076 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.77 E-value=0.001 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 354
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.77 E-value=0.00071 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 355
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.76 E-value=0.00066 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.76 E-value=0.00056 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999753
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.76 E-value=0.00072 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 358
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.75 E-value=0.0006 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 359
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.74 E-value=0.0008 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+.-.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998744
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.74 E-value=0.00085 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 361
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.73 E-value=0.00079 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 362
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.72 E-value=0.00097 Score=52.83 Aligned_cols=28 Identities=32% Similarity=0.655 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
-+|.+++|.|+.||||||+.+.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.72 E-value=0.00078 Score=54.00 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=22.1
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
..+|.++.|.|++||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999987553
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00067 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 365
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.71 E-value=0.00089 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 366
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00075 Score=52.75 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 367
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0007 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 368
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.70 E-value=0.00086 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 369
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.70 E-value=0.00044 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|+|||||++.+.+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.70 E-value=0.00076 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.70 E-value=0.00088 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+|-.++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998643
No 372
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.70 E-value=0.00097 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 373
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.69 E-value=0.00094 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 374
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.69 E-value=0.0008 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 375
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.69 E-value=0.00096 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy8250 26 LLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.68 E-value=0.00094 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998754
No 377
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.00079 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 378
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.67 E-value=0.00089 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 379
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.67 E-value=0.00082 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 380
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.65 E-value=0.00079 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
=.++|+|+.|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 381
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.64 E-value=0.00099 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 382
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.64 E-value=0.00098 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 383
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.64 E-value=0.00098 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 384
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.64 E-value=0.00091 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.001 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.63 E-value=0.00092 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy8250 26 LLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.62 E-value=0.0009 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 388
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.0011 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 389
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.62 E-value=0.001 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.5
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
No 390
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.62 E-value=0.0011 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.62 E-value=0.0014 Score=52.18 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+..+.|+|+.||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
No 392
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.62 E-value=0.001 Score=51.18 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-=.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998754
No 393
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.001 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
No 394
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.61 E-value=0.0011 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.+|.+++|.|++||||||+.+.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999987654
No 395
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.00086 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
No 396
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.0009 Score=55.79 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+..+.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.00097 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 398
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.60 E-value=0.0014 Score=49.16 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
=.++++|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 399
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.60 E-value=0.001 Score=51.10 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998654
No 400
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.60 E-value=0.00088 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.60 E-value=0.0012 Score=51.41 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 402
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.59 E-value=0.0012 Score=53.76 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=24.9
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+.++..+.|.||+|+|||||.+.++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35677799999999999999999998653
No 403
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.59 E-value=0.00087 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 404
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.58 E-value=0.0012 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
-.++++|.+|+|||||++.+.|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 47999999999999999999986654
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.0015 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999644
No 406
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.58 E-value=0.0013 Score=58.12 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=26.7
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+.+-+|+..+|+||+|+|||||++.|+....
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4567899999999999999999999887543
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.58 E-value=0.00076 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
=.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 408
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0012 Score=57.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
-....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999875
No 409
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998643
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.57 E-value=0.0014 Score=55.19 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998643
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.56 E-value=0.0013 Score=52.17 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.56 E-value=0.00098 Score=50.40 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++++|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 413
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0013 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998755
No 414
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.54 E-value=0.0012 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998744
No 415
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.54 E-value=0.0014 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.53 E-value=0.0015 Score=49.88 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999998887643
No 417
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.53 E-value=0.0012 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 418
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0012 Score=51.12 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.51 E-value=0.0015 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 420
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.50 E-value=0.0013 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.50 E-value=0.0017 Score=51.86 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+|.+++|.|++||||||+.+.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998655
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.50 E-value=0.0012 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 423
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.49 E-value=0.0012 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 424
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.49 E-value=0.00083 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=9.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999987643
No 425
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.49 E-value=0.0013 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.48 E-value=0.0016 Score=51.82 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=25.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.+|.++.+-|+.||||||+.+.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999998665
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.45 E-value=0.0016 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=24.6
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0015 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.5
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998755
No 429
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.43 E-value=0.0013 Score=50.70 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 430
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.41 E-value=0.0012 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999753
No 431
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.002 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 432
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0015 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 433
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.39 E-value=0.0019 Score=51.36 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.0
Q ss_pred EEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 20 ~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.+.+..++.|+||.||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3466778999999999999999999854
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.38 E-value=0.0016 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|+.|+|||||++.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988654
No 435
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.38 E-value=0.00055 Score=64.54 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=34.1
Q ss_pred EEEEcCCcEEEEECCCCccHHHHHHHHHcCCCCCCceEEEECCEeC
Q psy8250 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63 (212)
Q Consensus 18 s~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~p~~~G~I~~~g~~~ 63 (212)
++.+.++..+.|.||+|+|||||.++|++.+. .+-+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHh
Confidence 55678899999999999999999999998764 23455665554
No 436
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.37 E-value=0.0015 Score=57.45 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999884
No 437
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.36 E-value=0.0016 Score=57.03 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999865
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.0012 Score=53.43 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.5
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..++.+++|.|+.||||||+.+.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999988654
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.0
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.002 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 441
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0029 Score=50.08 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHH
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACIS 45 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~ 45 (212)
+++|+++.|.|+.|+|||||.--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976543
No 442
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.32 E-value=0.0031 Score=48.59 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=24.5
Q ss_pred eeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 13 ~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.++..-.. -.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34333333 4588899999999999999887753
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.31 E-value=0.0025 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998643
No 444
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.00049 Score=55.64 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy8250 27 LAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 27 ~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+.|.||+|+|||||.++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999998743
No 445
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.30 E-value=0.00088 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 446
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.29 E-value=0.00082 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=4.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998654
No 448
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.25 E-value=0.0023 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
=.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998865
No 449
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.25 E-value=0.0052 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
..+.|.||+|+|||++.+.|+..+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47889999999999999999987643
No 450
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.23 E-value=0.0021 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
=.++++|+.|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999888753
No 451
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.21 E-value=0.0012 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.7
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g 46 (212)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999865
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.21 E-value=0.0027 Score=48.92 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCccHHHHH-HHHH
Q psy8250 23 SGSLLAIMGPSGAGKTTLL-ACIS 45 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl-~~i~ 45 (212)
+|.++.+.||.||||||++ +.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999997 5544
No 453
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.17 E-value=0.0035 Score=53.54 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.9
Q ss_pred EcCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 21 AESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 21 i~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+++|+++.|.||+|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877543
No 454
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0024 Score=56.08 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999876653
No 455
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.15 E-value=0.0034 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=23.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
|.+++|=|+-||||||+.+.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 456
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.14 E-value=0.0007 Score=59.57 Aligned_cols=36 Identities=36% Similarity=0.620 Sum_probs=27.8
Q ss_pred eeeEEEEcCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy8250 15 ESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQG 50 (212)
Q Consensus 15 ~~vs~~i~~Ge~--~~iiGpnGaGKSTLl~~i~g~~~p 50 (212)
+.+.-.+..|.+ +.|.||+|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344444556665 889999999999999999987643
No 457
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0023 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0033 Score=49.45 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++.|+||.||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
No 459
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.10 E-value=0.0034 Score=46.15 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4556688999999999999999987543
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.07 E-value=0.003 Score=54.85 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+++|.||+|||||||...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998643
No 461
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.06 E-value=0.0017 Score=56.83 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=25.5
Q ss_pred EEEcCC--cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 19 GIAESG--SLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 19 ~~i~~G--e~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
|.+.++ .+++++|++|+||||+...|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5899999999999999999998765
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0036 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998654
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.0028 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998755
No 464
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.97 E-value=0.0039 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
..-+++|+|+.|+|||||++.+++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 465
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.94 E-value=0.004 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
-.++++|.+|+|||||++.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998653
No 466
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.92 E-value=0.0037 Score=54.11 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCccccCCCCCCCChHHHHHHHHHHHHhhCCCeEEe
Q psy8250 111 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVP 155 (212)
Q Consensus 111 ~~~~~l~~~gl~~~~~~~~~~LSgGqrqRv~lA~al~~~p~llil 155 (212)
.+.++++.++.... ...+|..+..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45566666665432 347899998888777667779999998
No 467
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.89 E-value=0.0055 Score=50.91 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=21.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+-.++|+|+.|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998775
No 468
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.89 E-value=0.0046 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.6
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999887655
No 469
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.87 E-value=0.0037 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|++|+|||||++.++|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 470
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.85 E-value=0.0043 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 471
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.83 E-value=0.0015 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35899999999999999888753
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.80 E-value=0.0061 Score=50.80 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+..+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 473
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.80 E-value=0.0049 Score=52.31 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.3
Q ss_pred eeeEEEEcCCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 15 ~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
..+.++++.--.++|+|..+||||||++.+++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345556655556899999999999999999864
No 474
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.78 E-value=0.006 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.+||+||.||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999997533
No 475
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.78 E-value=0.0031 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 476
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.77 E-value=0.0031 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHH-HHcC
Q psy8250 26 LLAIMGPSGAGKTTLLAC-ISQR 47 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~-i~g~ 47 (212)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 5553
No 477
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.75 E-value=0.0057 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.5
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+...+.|.||.|+|||||.+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344568899999999999999998753
No 478
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.73 E-value=0.0079 Score=50.43 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=27.7
Q ss_pred cCCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHH
Q psy8250 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45 (212)
Q Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~ 45 (212)
|.....++..-..+ .|.-+.|.|+||+||||+...+.
T Consensus 132 la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 132 FATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp TCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred hhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44455667754444 57789999999999999987764
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.72 E-value=0.006 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.5
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999865
No 480
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.66 E-value=0.0063 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+..+.|.||.|+||||+.+.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999997653
No 481
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.66 E-value=0.0068 Score=51.15 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=24.9
Q ss_pred EEEcCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 19 GIAESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 19 ~~i~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
.-+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999874
No 482
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.66 E-value=0.0048 Score=55.63 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy8250 25 SLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 25 e~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-.++|+|..|+|||||++.|.|.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 483
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.66 E-value=0.012 Score=52.14 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=39.0
Q ss_pred CCCCCCCChHHHHHHHHHHH--HhhC---------------CCeEEecCCCC-CChhhHHHHHHHHHHHH
Q psy8250 126 NSVLNVLSGGERKRVALAVQ--TIIV---------------QSGFVPQHDLT-VDTLTVHEHMTLMARLK 177 (212)
Q Consensus 126 ~~~~~~LSgGqrqRv~lA~a--l~~~---------------p~llilDEPt~-lD~~~~~~~~~~l~~l~ 177 (212)
++..+.+||||+|-.-+|++ +++. -.+++|||+ + +|....+..+++++++-
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg 442 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD 442 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC
Confidence 34467899999996544443 3331 257999999 9 99999999999998874
No 484
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.65 E-value=0.00093 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.++|+|+.|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 485
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.64 E-value=0.0042 Score=54.83 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
+|=.++|+|+.|+|||||++.+++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4556999999999999999999884
No 486
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.61 E-value=0.0064 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
++..+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578899999999999999999865
No 487
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.59 E-value=0.0046 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQR 47 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~ 47 (212)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4677999999999999999999985
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.58 E-value=0.0067 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
+|..+.|.||.|+|||||.+.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999997664
No 489
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.57 E-value=0.0073 Score=55.31 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+|.++.|.|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998755
No 490
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.56 E-value=0.0074 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy8250 26 LLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 26 ~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.++++|+.|+|||||++.|+|...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 589999999999999999998543
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.0072 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5579999999999999999998654
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.55 E-value=0.0083 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+...+.|.||.|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346678999999999999999998754
No 493
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.53 E-value=0.0088 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+..-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999998754
No 494
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.51 E-value=0.0052 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
--+++|+|+.|+|||||++.|+|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3568999999999999999999864
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.48 E-value=0.0091 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.2
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHc
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQ 46 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g 46 (212)
..|..+.|.||.|+|||||++.+..
T Consensus 29 ~~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 29 ENYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCeEEEECCCcCCHHHHHHHHHH
Confidence 3468999999999999999999875
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.47 E-value=0.0084 Score=54.34 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 23 ~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
.|.++.|.|++||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999987553
No 497
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.47 E-value=0.0013 Score=54.84 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCcceeeeeEEEEcCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy8250 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ 49 (212)
Q Consensus 9 ~~~~~l~~vs~~i~~Ge~~~iiGpnGaGKSTLl~~i~g~~~ 49 (212)
|...+++.+...+..|.-+.|.||.|+|||||.+.++..+.
T Consensus 31 g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 31 GQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp SCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 33334444444445577899999999999999999998654
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.47 E-value=0.0079 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 24 GSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 24 Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
-..+.|.||.|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999755
No 499
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.46 E-value=0.0098 Score=47.41 Aligned_cols=27 Identities=37% Similarity=0.360 Sum_probs=21.3
Q ss_pred cCCcEEEEECCCCccHHHHHHHHHcCC
Q psy8250 22 ESGSLLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 22 ~~Ge~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
.+|.++.+.||.|+||||++.-++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999776555433
No 500
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.41 E-value=0.0021 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=22.7
Q ss_pred EcCCc---EEEEECCCCccHHHHHHHHHcCC
Q psy8250 21 AESGS---LLAIMGPSGAGKTTLLACISQRI 48 (212)
Q Consensus 21 i~~Ge---~~~iiGpnGaGKSTLl~~i~g~~ 48 (212)
+..|. .+.|.||.|+||||+++.++..+
T Consensus 32 l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44454 48899999999999999998654
Done!