RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8250
(212 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 158 bits (401), Expect = 2e-45
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQ--ILLNGLEVEKNLMVKVSG 73
++SG+A+ G LLA+MG SGAGKTTL+ ++ R V G +LLNG+ ++ M +S
Sbjct: 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV-- 131
+V Q DL + TLTV EH+ A L+M R + E+ VD +L+ LGL KC N+ + V
Sbjct: 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPG 162
Query: 132 ----LSGGERKRVALAVQTI 147
LSGGERKR+A A + +
Sbjct: 163 RVKGLSGGERKRLAFASELL 182
Score = 68.5 bits (168), Expect = 1e-13
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 151 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR 204
S +V Q DL + TLTV EH+ A L+M R + E+ VD +L+ LGL KC
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA 154
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 120 bits (304), Expect = 4e-34
Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 10/167 (5%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMVKVSGF 74
+S ESG ++AI+G SG+GKTTLL IS R++G GQIL NG + + K +
Sbjct: 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELGLLKCKNSVLNVLS 133
V Q D+ + LTV E +T A L++ R R R D LL++L L + +++ +S
Sbjct: 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGIS 145
Query: 134 GGERKRVALAVQTIIVQSGFV----PQHDLTVDTLTVHEHMTLMARL 176
GGER+RV++AVQ ++ + P L D+ T ++ +++L
Sbjct: 146 GGERRRVSIAVQ-LLWDPKVLILDEPTSGL--DSFTALNLVSTLSQL 189
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 151 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER-ARTVDALLKELGL 200
+V Q D+ + LTV E +T A L++ R R R D LL++L L
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL 133
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 105 bits (264), Expect = 2e-26
Identities = 53/138 (38%), Positives = 89/138 (64%), Gaps = 7/138 (5%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGFV 75
++G+A G +LA++GPSG+GK+TLL ++ RIQG+ G IL N + K ++ K +GFV
Sbjct: 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL-KRTGFV 145
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV---- 131
Q D+ LTV E + + L++ ++L E+ ++++ ELGL KC+N+++
Sbjct: 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIR 205
Query: 132 -LSGGERKRVALAVQTII 148
+SGGERKRV++A + +I
Sbjct: 206 GISGGERKRVSIAHEMLI 223
Score = 43.7 bits (103), Expect = 4e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 147 IIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 203
I+ ++GFV Q D+ LTV E + + L++ ++L E+ ++++ ELGL KC
Sbjct: 138 ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 99.5 bits (249), Expect = 3e-26
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 33/133 (24%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACIS-QRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
++SG A+ G L AIMGPSGAGK+TLL ++ +R V G++L+NG ++K K+ G+
Sbjct: 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGY 86
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
VPQ D+ TLTV E + A+L+ LSG
Sbjct: 87 VPQDDILHPTLTVRETLMFAAKLR--------------------------------GLSG 114
Query: 135 GERKRVALAVQTI 147
GERKRV++A++ +
Sbjct: 115 GERKRVSIALELV 127
Score = 36.4 bits (85), Expect = 0.005
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 16/66 (24%)
Query: 125 KNSVLNVLSGGERKRVALAVQ-TIIV------------QSGFVPQHDLTVDTLTVHEHMT 171
K+++LN L+G +R L V +++ G+VPQ D+ TLTV E +
Sbjct: 48 KSTLLNALAG---RRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLM 104
Query: 172 LMARLK 177
A+L+
Sbjct: 105 FAAKLR 110
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 98.1 bits (245), Expect = 9e-25
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
K +L G+ E G + ++GP+GAGKTTLL ++ ++ G+IL+ G +V K
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEPA 74
Query: 69 V--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ G+VPQ LTV E++ ARL ER ++ LL+ GL N
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKAN 131
Query: 127 SVLNVLSGGERKRVALAV 144
+ LSGG ++R+++A+
Sbjct: 132 KKVRTLSGGMKQRLSIAL 149
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
G+VPQ LTV E++ ARL ER ++ LL+ GL
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGL 126
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 92.2 bits (230), Expect = 3e-23
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQHDL 80
G + ++G +GAGKTT L ++ ++ G +NG + + G+ PQ D
Sbjct: 28 GEIFGLLGHNGAGKTTTLKMLTGELRPTS-GTAYINGYSIRTD-RKAARQSLGYCPQFDA 85
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
D LTV EH+ ARLK L E V+ LL+ LGL N LSGG ++++
Sbjct: 86 LFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142
Query: 141 ALAVQTI 147
+LA+ I
Sbjct: 143 SLAIALI 149
Score = 51.7 bits (125), Expect = 2e-08
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR 204
G+ PQ D D LTV EH+ ARLK L E V+ LL+ LGL
Sbjct: 78 GYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKA 127
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 84.0 bits (208), Expect = 6e-19
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV--DGQILLNGLEVEKNLMVKVSGFV 75
G + G+L A+MG SGAGKTTLL +++R+ V G L+NG ++ + + G+V
Sbjct: 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-RSIGYV 841
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV---- 131
Q DL + T TV E + A L+ +++ E+ V+ ++K L + ++V+ V
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG 901
Query: 132 LSGGERKRVALAVQ 145
L+ +RKR+ + V+
Sbjct: 902 LNVEQRKRLTIGVE 915
Score = 70.5 bits (173), Expect = 3e-14
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 8 FGDTNYKESLS---GIAESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGL 61
F DT + L G+ + G L ++G G+G +TLL I+ G V+G I +G+
Sbjct: 68 FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI 127
Query: 62 ---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN----LHHVERARTV-D 113
E++K+ V + + D+ LTV E + AR K +N + E A+ + D
Sbjct: 128 TPEEIKKHYRGDVV-YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD 186
Query: 114 ALLKELGLLKCKNSV-----LNVLSGGERKRVALA 143
+ GL +N+ + +SGGERKRV++A
Sbjct: 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221
Score = 36.2 bits (84), Expect = 0.011
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 103 LHHVE---RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQT---IIV------- 149
L++V+ + T+ AL+ G K ++LNVL+ RV V T +V
Sbjct: 779 LNNVDGWVKPGTLTALMGASG--AGKTTLLNVLAE----RVTTGVITGGDRLVNGRPLDS 832
Query: 150 ----QSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
G+V Q DL + T TV E + A L+ +++ E+ V+ ++K L +
Sbjct: 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 78.4 bits (194), Expect = 3e-18
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQR-IQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
SG + G+L A+MG SGAGKTTLL ++ R G + G+IL+NG ++KN + +G+V
Sbjct: 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ-RSTGYVE 85
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
Q D+ LTV E + A L R L +R R
Sbjct: 86 QQDVHSPNLTVREALRFSALL---RGLSVEQRKRL 117
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 76.8 bits (190), Expect = 4e-17
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KN 66
K L + G + I+GP+G+GK+TLL C++ + G++LL+G ++ K
Sbjct: 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKE 73
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKEL 119
L K+ +VPQ LTV+E + L+ R H E V+ L+ L
Sbjct: 74 LAKKL-AYVPQSPSAPFGLTVYE-LVLLGRYP-----HLGLFGRPSKEDEEIVEEALELL 126
Query: 120 GLLKCKNSVLNVLSGGERKRVALAV 144
GL + ++ LSGGER+RV +A
Sbjct: 127 GLEHLADRPVDELSGGERQRVLIAR 151
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 75.6 bits (187), Expect = 6e-17
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 17/144 (11%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--- 65
E+L + E+G +AI+GPSG+GK+TLL + + G++L+NG ++ K
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSE 74
Query: 66 NLMVKVS----GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
+ K+ GFV Q +L + LTV E++ L + A + LL+ LG
Sbjct: 75 KELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAGRRKRAA---EELLEVLG 130
Query: 121 LLKCKNSVL-NVLSGGERKRVALA 143
L + LSGG+++RVA+A
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIA 154
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 76.1 bits (188), Expect = 7e-17
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
+ L I E G + A++GP+GAGK+TLL I ++ G+I + G V K
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRK 73
Query: 69 VKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
G+VPQ +VD +TV + + + R L+ ++ + VD L+ +G+
Sbjct: 74 RLRIGYVPQK-SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMED 131
Query: 124 CKNSVLNVLSGGERKRVALA 143
++ + LSGG+++RV LA
Sbjct: 132 LRDRQIGELSGGQKQRVLLA 151
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 74.1 bits (183), Expect = 2e-16
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEKNLMVKV 71
E +S + G LAI+GP+GAGK+TLL I G + G I + G +EK K
Sbjct: 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKA----ILGLLKPTSGSIRVFGKPLEK--ERKR 69
Query: 72 SGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
G+VPQ ++D ++V + M L + R L ++A+ VD L+ +GL + +
Sbjct: 70 IGYVPQR-RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELAD 127
Query: 127 SVLNVLSGGERKRVALA 143
+ LSGG+++RV LA
Sbjct: 128 RQIGELSGGQQQRVLLA 144
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 74.3 bits (183), Expect = 2e-16
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGF 74
G +AI+GPSGAGK+TLL CI+ R+ G ILL G ++ + + + G
Sbjct: 25 INPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 75 VPQHDLTVDTLTVHEHMTLMARL-------KMDRNLHHVERARTVDALLKELGLLKCKNS 127
+ QH ++ LTV E++ L RL + ++ R + A L+ +GL
Sbjct: 84 IFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKERALSA-LERVGLADKAYQ 141
Query: 128 VLNVLSGGERKRVALAVQTIIVQSGFVPQHDL--------TVDTLTVHEHMTLMARLKMD 179
+ LSGG+++RVA+A Q DL ++D T + M + R+ +
Sbjct: 142 RADQLSGGQQQRVAIA-------RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194
Query: 180 R------NLHHVERAR 189
NLH V+ A+
Sbjct: 195 DGITVIINLHQVDLAK 210
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 73.3 bits (181), Expect = 4e-16
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
+ G + I+GP+G+GK+TLL ++ + G G++L++G ++ K + ++ G V Q+
Sbjct: 25 KKGEFVLIVGPNGSGKSTLLRLLN-GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83
Query: 79 DLTVDTLTVHEHMTLMARLKMD-----RNLH--HVERARTVDALLKELGLLKCKNSVLNV 131
+ ++ + NL E V+ L+ +GL ++
Sbjct: 84 P---------DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134
Query: 132 LSGGERKRVALA 143
LSGG+++RVA+A
Sbjct: 135 LSGGQKQRVAIA 146
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 71.5 bits (176), Expect = 2e-15
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV--KVSG 73
+S G + ++GP+GAGKTTL+ ++ + G I ++G +V K + G
Sbjct: 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPSSGTIRIDGQDVLKQPQKLRRRIG 75
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++PQ TV E + +A LK + E VD +L+ + L + LS
Sbjct: 76 YLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLS 132
Query: 134 GGERKRVALA 143
GG R+RV +A
Sbjct: 133 GGMRRRVGIA 142
Score = 29.1 bits (66), Expect = 1.4
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 201
G++PQ TV E + +A LK + E VD +L+ + L
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLG 121
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 71.4 bits (175), Expect = 3e-15
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-N 66
FG + ++ +GSL+A++GPSG+GK+TLL I+ Q D G+I LNG + + +
Sbjct: 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVH 68
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ GFV QH LTV +++ L++ ++ +AR V+ LL+ + L +
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAF--GLEIRKHPKAKIKAR-VEELLELVQLEGLGD 125
Query: 127 SVLNVLSGGERKRVALA 143
N LSGG+R+RVALA
Sbjct: 126 RYPNQLSGGQRQRVALA 142
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 70.4 bits (173), Expect = 7e-15
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKN 66
FGD + +S SG L+A++GPSG+GKTTLL I+ + D G IL G + +
Sbjct: 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVP 70
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCK 125
+ + GFV QH +TV +++ R+K E V LLK + L
Sbjct: 71 VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 126 NSVLNVLSGGERKRVALA 143
+ LSGG+R+RVALA
Sbjct: 131 DRYPAQLSGGQRQRVALA 148
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 68.3 bits (168), Expect = 3e-14
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV----KVSG 73
E G +AI+GPSG+GK+TLL + + G++ ++G ++ EK L + G
Sbjct: 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKELAAFRRRHI-G 85
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
FV Q + LT E++ L L ERA LL+ +GL N + LS
Sbjct: 86 FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE---ELLERVGLGDRLNHYPSELS 142
Query: 134 GGERKRVALA 143
GG+++RVA+A
Sbjct: 143 GGQQQRVAIA 152
Score = 26.7 bits (60), Expect = 9.6
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 130 NVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 189
++ E++ A + I GFV Q + LT E++ L L ERA
Sbjct: 67 DISKLSEKELAAFRRRHI----GFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122
Query: 190 TVDALLKELGL 200
LL+ +GL
Sbjct: 123 ---ELLERVGL 130
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 67.6 bits (166), Expect = 7e-14
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
SG ++ ++GP+GAGKTT I ++ D G+ILL+ ++ K M K + G++PQ
Sbjct: 28 NSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDITKLPMHKRARLGIGYLPQ 86
Query: 78 HDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
LTV ++ +MA L++ +++L ER +DALL+E + ++S LSGGE
Sbjct: 87 EASIFRKLTVEDN--IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGE 144
Query: 137 RKRVALA 143
R+RV +A
Sbjct: 145 RRRVEIA 151
Score = 27.6 bits (62), Expect = 4.6
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCR 204
G++PQ LTV ++ +MA L++ +++L ER +DALL+E + R
Sbjct: 82 GYLPQEASIFRKLTVEDN--IMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 66.8 bits (164), Expect = 2e-13
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLM 68
N K++L + G +A++GPSGAGK+TLL C++ ++ G +L++G ++ K
Sbjct: 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKG 70
Query: 69 VKV------SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL----------HHVERARTV 112
+ G + Q ++ L+V E++ L RL R+ +RA
Sbjct: 71 KALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLG-RRSTWRSLFGLFPKEEKQRAL-- 126
Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV----PQHDLTVDTLTVHE 168
A L+ +GLL + LSGG+++RVA+A + ++ Q + P L D + +
Sbjct: 127 -AALERVGLLDKAYQRADQLSGGQQQRVAIA-RALMQQPKLILADEPVASL--DPASSRQ 182
Query: 169 HMTLMARLKMDR------NLHHVERAR 189
M L+ R+ + +LH V+ AR
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDLAR 209
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 66.0 bits (162), Expect = 2e-13
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
+G + LS E G LA++GPSG GKTTLL I+ + D G+IL++G +V
Sbjct: 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVP 68
Query: 64 --EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELG 120
+N+ G V Q LTV E++ + + + E V LL+ +G
Sbjct: 69 PERRNI-----GMVFQDYALFPHLTVAENIAFGLKLRGVPKA----EIRARVRELLELVG 119
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
L N + LSGG+++RVALA
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALA 142
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 66.0 bits (162), Expect = 2e-13
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 22/148 (14%)
Query: 8 FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
FGD L GI + G ++ I+GPSG+GK+TLL CI+ + G I+++GL+
Sbjct: 10 FGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLK 63
Query: 63 VEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDAL 115
+ N + + G V Q LTV E++TL + M + ERA L
Sbjct: 64 LTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-EAEERAL---EL 119
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L+++GL ++ LSGG+++RVA+A
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIA 147
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 66.7 bits (164), Expect = 2e-13
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVK 70
L + G ++AI+GP+GAGK+TLL +S + D G++ LNG + + +
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAELAR 76
Query: 71 VSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
+PQH L+ TV E + M R L E V A L ++ L
Sbjct: 77 RRAVLPQHSSLSFP-FTVEE-VVAMGR--APHGLSRAEDDALVAAALAQVDLAHLAGRDY 132
Query: 130 NVLSGGERKRVALA 143
LSGGE++RV LA
Sbjct: 133 PQLSGGEQQRVQLA 146
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 67.9 bits (166), Expect = 2e-13
Identities = 40/138 (28%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEVEKNLMVKVSGF 74
++G G L A+MG SGAGKTTL+ ++ R G ++G I ++G ++ ++SG+
Sbjct: 898 EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGY 957
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
Q+D+ +TV E + A L++ + + E+ VD +++ + L K++++ +
Sbjct: 958 CEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017
Query: 132 --LSGGERKRVALAVQTI 147
LS +RKR+ +AV+ +
Sbjct: 1018 TGLSTEQRKRLTIAVELV 1035
Score = 57.5 bits (139), Expect = 8e-10
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 38/161 (23%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVDGQILLNGLEVEKNLMVKVSGFV 75
SGI + + ++GP +GKTTLL ++ ++ V G+I NG + + + K S ++
Sbjct: 185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYI 244
Query: 76 PQHDLTVDTLTVHEHM----------------TLMARLKMDRNLH--------------- 104
Q+D+ V +TV E + + +AR + D +
Sbjct: 245 SQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAME 304
Query: 105 HVERARTVDALLKELGLLKCKNSV-----LNVLSGGERKRV 140
V+ + D LK LGL CK+++ + +SGG++KRV
Sbjct: 305 GVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRV 345
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 66.0 bits (162), Expect = 3e-13
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQH 78
G ++ ++GP+GAGKTT I ++ D G+ILL+G ++ K M K + G++PQ
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHKRARLGIGYLPQE 83
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
LTV E+ ++A L++ R L ER ++ LL+E + + S + LSGGER+
Sbjct: 84 ASIFRKLTVEEN--ILAVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERR 140
Query: 139 RVALA 143
RV +A
Sbjct: 141 RVEIA 145
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 64.9 bits (159), Expect = 4e-13
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FGD + L+ E G + AI+G SG+GK+TLL I ++ GQ+ LNG E
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDSGQVYLNGQETPPLN 66
Query: 68 MVKVS-------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
K S G++ Q+ ++ TV E++ L + K L E+ L+++G
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVG 123
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
L + LSGGE++RVALA
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALA 146
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 65.4 bits (160), Expect = 5e-13
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFVPQ 77
G ++AI+GPSGAGK+TLL ++ + G+IL NG+++ E + + G + Q
Sbjct: 30 GEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 78 HDLTVDTLTVHEHMTL-----MARLKMDRNL-HHVERARTVDALLKELGLLKCKNSVLNV 131
V L+V E++ L + + L ++A+ +DA L+ +G+L +
Sbjct: 89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-LERVGILDKAYQRAST 147
Query: 132 LSGGERKRVALAVQTIIVQSGFVPQHDLTV---DTLTVHEHMTLMARLKMDR------NL 182
LSGG+++RVA+A +VQ + D V D + + M ++ + + NL
Sbjct: 148 LSGGQQQRVAIA--RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL 205
Query: 183 HHVERAR 189
H V+ A+
Sbjct: 206 HQVDLAK 212
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 65.7 bits (161), Expect = 8e-13
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 23/132 (17%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFV 75
E G + ++GPSG GK+TLL I+ + G+IL++G +V ++ + V
Sbjct: 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTDLPPEKRGI-----AMV 80
Query: 76 PQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL---LKCKNSVLNV 131
Q+ +TV+E++ +L + + E + V + K LGL L K
Sbjct: 81 FQNYALYPHMTVYENIAFGLKLRGVPKA----EIDKRVKEVAKLLGLEHLLNRK---PLQ 133
Query: 132 LSGGERKRVALA 143
LSGG+R+RVALA
Sbjct: 134 LSGGQRQRVALA 145
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 65.1 bits (159), Expect = 1e-12
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
+SG L+A++GPSGAGK+TLL I+ D G+I LNG + + V GFV Q
Sbjct: 26 KSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
H +TV +++ +++ +R E V+ LL+ + L + LSGG+R
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQR 143
Query: 138 KRVALA 143
+RVALA
Sbjct: 144 QRVALA 149
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 62.7 bits (153), Expect = 4e-12
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS----GFV 75
+ + I G SGAGK+TLL CI+ + D G I+LNG + K + + G V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
Q L V E++ + K +R E +VD LL LGL N LSGG
Sbjct: 81 FQQYALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLLGLDHLLNRYPAQLSGG 135
Query: 136 ERKRVALA 143
E++RVALA
Sbjct: 136 EKQRVALA 143
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 62.5 bits (153), Expect = 4e-12
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSGFVPQHDL 80
E G +A++GPSG GK+TLL I+ + G++L++G V G+V Q D
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTGPGPDR---GYVFQQDA 83
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
+ LTV +++ L L + + E + LL+ +GL +N+ + LSGG R+RV
Sbjct: 84 LLPWLTVLDNVALGLEL---QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140
Query: 141 ALA 143
ALA
Sbjct: 141 ALA 143
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 62.2 bits (152), Expect = 9e-12
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 20/148 (13%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
FGD + + G +LAI+G SG+GK+TLL I ++ D G+IL++G ++
Sbjct: 18 FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLS 76
Query: 64 --EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLKEL 119
E + K G + Q +LTV E++ R K+ +L V L+ +
Sbjct: 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR----ELVLMKLELV 132
Query: 120 GLLKCKNSVLNV----LSGGERKRVALA 143
GL + + ++ LSGG RKRVALA
Sbjct: 133 GL---RGAAADLYPSELSGGMRKRVALA 157
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 61.1 bits (149), Expect = 1e-11
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 32/133 (24%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD--VDGQILLNGLEVEKNLMV--KVS 72
SG+ + G ++ ++G G+G +TLL ++ R +G+ V+G I NG+ ++
Sbjct: 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI 85
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NSVLNV 131
+V + D+ TLTV E T+D L+CK N +
Sbjct: 86 IYVSEEDVHFPTLTVRE---------------------TLDF------ALRCKGNEFVRG 118
Query: 132 LSGGERKRVALAV 144
+SGGERKRV++A
Sbjct: 119 ISGGERKRVSIAE 131
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 61.0 bits (149), Expect = 1e-11
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFVPQ 77
G +LAI+GPSG+GK+TLL I ++ D G++L++G ++ E + + G + Q
Sbjct: 26 GEILAIIGPSGSGKSTLLRLIVGLLRPDS-GEVLIDGEDISGLSEAELYRLRRRMGMLFQ 84
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
D+LTV E++ L+ L E V L+ +GL ++ LSGG +
Sbjct: 85 SGALFDSLTVFENVAFP--LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMK 142
Query: 138 KRVALA 143
KRVALA
Sbjct: 143 KRVALA 148
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 61.0 bits (149), Expect = 2e-11
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
E G +AI+GPSG GK+TLL I+ ++ G++LL+G V G+V Q D
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIA-GLEKPTSGEVLLDGRPV--TGPGPDIGYVFQEDAL 83
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
+ LTV +++ L L+ E LL+ +GL ++ + LSGG R+RVA
Sbjct: 84 LPWLTVLDNVALGLELRGKSK---AEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVA 140
Query: 142 LA 143
+A
Sbjct: 141 IA 142
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 60.6 bits (148), Expect = 2e-11
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 21/147 (14%)
Query: 8 FGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
FGD KE L GI+ E G ++ I+GPSG+GK+TLL C++ + G I ++G +
Sbjct: 12 FGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGED 65
Query: 63 V----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDALL 116
V + + + G V Q LTV E++TL + K+ + E+A LL
Sbjct: 66 VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKAL---ELL 121
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
+++GL ++ LSGG+++RVA+A
Sbjct: 122 EKVGLADKADAYPAQLSGGQQQRVAIA 148
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 58.2 bits (142), Expect = 8e-11
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 44/136 (32%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70
+ L + E+G ++ I+GP+GAGK+TLL ++ + G+ILL+G ++
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLKPSSGEILLDGKDLAS----- 65
Query: 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL---LKELGLLKCKNS 127
L E AR + + L+ LGL +
Sbjct: 66 --------------------------------LSPKELARKIAYVPQALELLGLAHLADR 93
Query: 128 VLNVLSGGERKRVALA 143
N LSGGER+RV LA
Sbjct: 94 PFNELSGGERQRVLLA 109
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid
transport, and lantibiotic immunity. In bacteria and
archaea, these transporters usually include an
ATP-binding protein and one or two integral membrane
proteins. Eukaryotic systems of the ABCA subfamily
display ABC domains that are quite similar to this
family. The ATP-binding domain shows the highest
similarity between all members of the ABC transporter
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 57.8 bits (141), Expect = 1e-10
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHD 79
E G + ++GP+GAGKTTL+ I ++ D G+I + G +++K + + G++P+
Sbjct: 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEP 82
Query: 80 LTVDTLTVHEHMTL 93
+ LTV E++ L
Sbjct: 83 SLYENLTVRENLKL 96
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 60.0 bits (145), Expect = 1e-10
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL-MVKVS-GFVPQHDLTVD 83
+ A +G +GAGKTT L+ ++ + G +L+ G ++E NL V+ S G PQH++
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
LTV EH+ A+LK E ++A+L++ GL +N LSGG ++++++A
Sbjct: 1017 HLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073
Query: 144 V 144
+
Sbjct: 1074 I 1074
Score = 50.8 bits (121), Expect = 2e-07
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 24 GSLLAIMGPSGAGKTT---LLACISQRIQGD--VDGQ-ILLNGLEVEKNLMVKVSGFVPQ 77
G ++G +GAGKTT +L + GD V G+ IL N +V +N+ G+ PQ
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-----GYCPQ 2019
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
D D LT EH+ L ARL R + E + + ++ LGL + + SGG +
Sbjct: 2020 FDAIDDLLTGREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNK 2076
Query: 138 KRVALAVQTI 147
++++ A+ I
Sbjct: 2077 RKLSTAIALI 2086
Score = 32.3 bits (73), Expect = 0.20
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 131 VLSGGERKRVALAVQTIIVQS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 189
VL GG+ L + QS G PQH++ LTV EH+ A+LK E
Sbjct: 987 VLVGGKDIETNLDA---VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQL 1040
Query: 190 TVDALLKELGL 200
++A+L++ GL
Sbjct: 1041 EMEAMLEDTGL 1051
Score = 30.8 bits (69), Expect = 0.65
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
G+ PQ D D LT EH+ L ARL R + E + + ++ LGL
Sbjct: 2015 GYCPQFDAIDDLLTGREHLYLYARL---RGVPAEEIEKVANWSIQSLGL 2060
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 58.5 bits (142), Expect = 2e-10
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
+G LS +G + A++GP+G GK+TLL C + R+ G + L +
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLS 70
Query: 64 EKNLMVKVSGFVPQHDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDAL 115
+ L +++ +PQH LT + +TV E ++L RL + V +A
Sbjct: 71 SRQLARRLA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQA------ 122
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
+++ + + L LSGG+R+R LA
Sbjct: 123 MEQTRINHLADRRLTDLSGGQRQRAFLA 150
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 59.2 bits (144), Expect = 2e-10
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 30/150 (20%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-----LE 62
FGD + +S + G + ++GPSG GKTTLL I+ Q G+ILL+G +
Sbjct: 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVP 73
Query: 63 VEK-NLMVKVSGFVPQHDLTVDTLTVHEHMT--------LMARLKMDRNLHHVERARTVD 113
EK + G V Q + HMT L R K+ + E V+
Sbjct: 74 PEKRPI-----GMVFQS------YALFPHMTVEENVAFGLKVRKKLKKA----EIKARVE 118
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALA 143
L+ +GL + + LSGG+++RVALA
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALA 148
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 57.6 bits (140), Expect = 2e-10
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----- 65
+E+L ++ G + + GPSGAGK+TLL I + G+IL+NG ++ +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKGRE 73
Query: 66 -NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ + G V Q + TV+E++ L R+ E R V +L +GL
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV---IGKPPREIRRRVSEVLDLVGLKHK 130
Query: 125 KNSVLNVLSGGERKRVALA 143
++ + LSGGE++RVA+A
Sbjct: 131 ARALPSQLSGGEQQRVAIA 149
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 57.7 bits (140), Expect = 2e-10
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-----EKNLMVKVSGFV 75
E G I+GP+G+GK+ LL I+ I+ D G+ILLNG ++ EK + +V
Sbjct: 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRDI----SYV 76
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
PQ+ +TV++++ + + E R V + + LG+ N LSGG
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDK---KEIERKVLEIAEMLGIDHLLNRKPETLSGG 133
Query: 136 ERKRVALAVQTII 148
E++RVA+A ++
Sbjct: 134 EQQRVAIARALVV 146
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 57.4 bits (139), Expect = 3e-10
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--EK 65
+GD +S G + ++GP+GAGKTT + ++ ++ G+ + G +V E
Sbjct: 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREP 68
Query: 66 NLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ + G V Q DL+VD LT E++ + ARL + ER +D LL +GLL+
Sbjct: 69 REVRRRIGIVFQ-DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEA 124
Query: 125 KNSVLNVLSGGERKRVALA 143
+ ++ SGG R+R+ +A
Sbjct: 125 ADRLVKTYSGGMRRRLEIA 143
Score = 30.0 bits (68), Expect = 0.70
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 152 GFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCR 204
G V Q DL+VD LT E++ + ARL + ER +D LL +GLL+
Sbjct: 76 GIVFQ-DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAA 125
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 57.3 bits (139), Expect = 3e-10
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
+G ++A+ G +GAGKTTL ++ + + G ILLNG ++ K G+V Q
Sbjct: 23 LYAGEIIALTGKNGAGKTTLAKILAG-LIKESSGSILLNGKPIKAKERRKSIGYVMQD-- 79
Query: 81 TVD----TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
VD T +V E + L + N E+A TV LK+L L K LSGG+
Sbjct: 80 -VDYQLFTDSVREELLLGLKELDAGN----EQAETV---LKDLDLYALKERHPLSLSGGQ 131
Query: 137 RKRVALAVQ 145
++R+A+A
Sbjct: 132 KQRLAIAAA 140
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 56.9 bits (138), Expect = 5e-10
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQ 77
E G L I+G SG+GK+TL ++ + G ILL+G + K V Q
Sbjct: 31 ERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAFYRPVQMVFQ 89
Query: 78 HDLTVDTLTVHEHMTLMARLKMD--RNLHHVERARTVDALLKELGLLKCKNSVL----NV 131
+++ T + R+ + R + + + LL ++GL S L +
Sbjct: 90 D----PYSSLNPRRT-VGRILSEPLRPHGLSKSQQRIAELLDQVGL---PPSFLDRRPHE 141
Query: 132 LSGGERKRVALA 143
LSGG+R+R+A+A
Sbjct: 142 LSGGQRQRIAIA 153
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 57.0 bits (138), Expect = 6e-10
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 8 FGD-TNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN 66
+G +S AE G + ++G +GAGKTTLL I+ + D G++ ++G++ ++
Sbjct: 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRD 69
Query: 67 LM--VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ G + LT E++ ARL L E + L K L LL+
Sbjct: 70 PSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEY 126
Query: 125 KNSVLNVLSGGERKRVALA 143
+ + S G +++VA+A
Sbjct: 127 LDRRVGEFSTGMKQKVAIA 145
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 54.6 bits (132), Expect = 6e-10
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 38 TTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTL 93
+TLL I+ +Q G ILL+G + K+ G V Q LTV E L
Sbjct: 1 STLLKLITGLLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE--NL 57
Query: 94 MARLKMDRNLHHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALA 143
L+ E + L+ +GL + + LSGG+++RVA+A
Sbjct: 58 FFGLRDK------EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 56.4 bits (136), Expect = 7e-10
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVD--GQILLNGLEVEKNLMVKVS----GFVPQ 77
G ++ +MGPSG GK+TLL+ + + G G++ LN ++ M+ + G + Q
Sbjct: 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD---MLPAAQRQIGILFQ 84
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
L L+V +++ + L R +A L+ GL + LSGG+R
Sbjct: 85 DALLFPHLSVGQNLL----FALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQR 140
Query: 138 KRVAL 142
RVAL
Sbjct: 141 ARVAL 145
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 55.5 bits (135), Expect = 8e-10
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 48/140 (34%)
Query: 10 DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK- 65
K L + + G +AI+GPSG+GK+TLL + + G+IL++G+++
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDL 69
Query: 66 --NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
+ K +VPQ T+ E
Sbjct: 70 DLESLRKNIAYVPQDPFLFSG-TIRE---------------------------------- 94
Query: 124 CKNSVLNVLSGGERKRVALA 143
N+LSGG+R+R+A+A
Sbjct: 95 ------NILSGGQRQRIAIA 108
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 55.9 bits (135), Expect = 1e-09
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL-------EVEKNLMVKVS 72
+ + G +A++G SG+GK+TLLA ++ G G++ L G E L K
Sbjct: 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
GFV Q + + TL E++ L A L+ + + A+ ALL++LGL K + + L
Sbjct: 91 GFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQLGLGKRLDHLPAQL 147
Query: 133 SGGERKRVALA 143
SGGE++RVALA
Sbjct: 148 SGGEQQRVALA 158
Score = 30.1 bits (68), Expect = 0.67
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 29/116 (25%)
Query: 106 VERARTVDALLKELGLLKCKNSVLNVLSG-------------------GERKRVALAVQT 146
V+R T+ AL+ E G K+++L +L+G E R L +
Sbjct: 33 VKRGETI-ALIGESG--SGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKH 89
Query: 147 IIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 202
+ GFV Q + + TL E++ L A L+ + + A+ ALL++LGL K
Sbjct: 90 V----GFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQLGLGK 138
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 56.3 bits (136), Expect = 1e-09
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
SG L+ ++GPSG GKTTLL I+ G I LNG +E + G V Q++
Sbjct: 29 ASGELVVVLGPSGCGKTTLLNLIAG-FVTPSRGSIQLNGRRIEGPGAER--GVVFQNEAL 85
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
+ L V +++ +L R + +R +L +GL ++ + LSGG R+RV
Sbjct: 86 LPWLNVIDNVAFGLQL---RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVG 142
Query: 142 LA 143
+A
Sbjct: 143 IA 144
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 55.4 bits (134), Expect = 1e-09
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--- 64
FG + +S E G + ++GP+GAGKTT + I I D G++L +G ++
Sbjct: 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDIAA 68
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+N + G++P+ + V + + +A+LK L E R +D L+ L L +
Sbjct: 69 RNRI----GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEY 121
Query: 125 KNSVLNVLSGGERKRVALAVQTII 148
N + LS G +++V +I
Sbjct: 122 ANKRVEELSKGNQQKVQFIA-AVI 144
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 55.3 bits (133), Expect = 2e-09
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQGDV---DGQILLNGLEVEKNLM 68
E +S SG ++ ++GP+GAGKTT ++ I R G++ D I L L
Sbjct: 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79
Query: 69 VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 128
+ G++PQ L+V+++ LMA L++ +L +R + L++E + ++S+
Sbjct: 80 I---GYLPQEASIFRRLSVYDN--LMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM 134
Query: 129 LNVLSGGERKRVALA 143
LSGGER+RV +A
Sbjct: 135 GQSLSGGERRRVEIA 149
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 55.1 bits (134), Expect = 2e-09
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF------- 74
G + ++GP+GAGKTTL IS ++ G +L +G ++ +++
Sbjct: 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEIARLGIGRTFQ 82
Query: 75 VPQ--HDLTV-DTLTVHEHMTLMARLKMDRNLHHVERAR-TVDALLKELGLLKCKNSVLN 130
+P+ +LTV + + V + L + R AR + LL+ +GL +
Sbjct: 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142
Query: 131 VLSGGERKRVALA 143
LS G+++R+ +A
Sbjct: 143 ELSYGQQRRLEIA 155
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 54.7 bits (132), Expect = 3e-09
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 16 SLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK------N 66
+L GI +G + ++GPSGAGK+TLL I + + G I +NG +V
Sbjct: 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIY-KEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ + G V Q + V+E++ + + E + V A L+ +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHR 131
Query: 127 SVLNVLSGGERKRVALA 143
++ LSGGE++RVA+A
Sbjct: 132 ALPAELSGGEQQRVAIA 148
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 54.3 bits (131), Expect = 4e-09
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQHD 79
+G ++AI+GPSGAGK+TLL I+ G+IL+NG++ + + VS +++
Sbjct: 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENN 81
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
L LTV +++ L L L+ +R + V+A ++GL + LSGG+R+R
Sbjct: 82 LFAH-LTVAQNIGL--GLSPGLKLNAEQREK-VEAAAAQVGLAGFLKRLPGELSGGQRQR 137
Query: 140 VALA 143
VALA
Sbjct: 138 VALA 141
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 54.2 bits (131), Expect = 5e-09
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL----MVKVSGFVP 76
E G + ++GP+G+GK+TLL ++ ++ G++L++GL+ + + G V
Sbjct: 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85
Query: 77 QH-DLTVDTLTVHEHMTLMAR-LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
Q+ D + TV + + L + R E V L+ +GL + + LSG
Sbjct: 86 QNPDDQLFGPTVEDEVAFGLENLGLPRE----EIEERVAEALELVGLEELLDRPPFNLSG 141
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 142 GQKQRVAIA 150
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 53.7 bits (129), Expect = 6e-09
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ-HD 79
A+ G LL ++GP+GAGKTTLL I I G + + G K + G+VPQ H+
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGKGW--RHIGYVPQRHE 59
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERA--RTVDALLKELGLLKCKNSVLNVLSGGER 137
D H + R L A V L+ +GL + + + LSGG+R
Sbjct: 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQR 119
Query: 138 KRVALA 143
+RV +A
Sbjct: 120 QRVLVA 125
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 53.9 bits (130), Expect = 7e-09
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN- 66
+GD + ++ G + +GP+GAGKTT + ++ ++ G + G +V +
Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREP 61
Query: 67 -LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
+ + G VPQ+ + LT E++ +M RL L E + LL+ L +
Sbjct: 62 RKVRRSIGIVPQYASVDEDLTGRENLEMMGRL---YGLPKDEAEERAEELLELFELGEAA 118
Query: 126 NSVLNVLSGGERKRVALAVQTI 147
+ + SGG R+R+ +A I
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLI 140
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 53.5 bits (129), Expect = 8e-09
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQ 77
G +LAI+GP+GAGK+TLL +S + D G++ LNG+ + + +PQ
Sbjct: 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQ 82
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
+ TV E + M R+ E R L L LSGGE+
Sbjct: 83 NSSLAFPFTVQE-VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQ 141
Query: 138 KRVALA 143
+RV LA
Sbjct: 142 QRVQLA 147
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 53.2 bits (128), Expect = 8e-09
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
+ G +AI+GPSG+GK+TLLA ++ G++ L G + K L + GF
Sbjct: 34 KRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDARAALRARHVGF 92
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
V Q + LT E++ L L+ + + A+ ALL+ +GL K LSG
Sbjct: 93 VFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQLSG 149
Query: 135 GERKRVALA 143
GE++RVALA
Sbjct: 150 GEQQRVALA 158
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 53.3 bits (129), Expect = 9e-09
Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGLEVEKNLMVK 70
+ +S G + A++GPSG GK+TLL +++ +G++LL+G ++ +
Sbjct: 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76
Query: 71 VS-----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
+ G V Q ++++++ RL + E V+ L++ L
Sbjct: 77 LELRRRVGMVFQK-PNPFPGSIYDNVAYGLRLHGIKL--KEELDERVEEALRKAALWDEV 133
Query: 126 NSVLNV--LSGGERKRVALAVQTIIVQ 150
L+ LSGG+++R+ LA + + +
Sbjct: 134 KDRLHALGLSGGQQQRLCLA-RALANE 159
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 53.5 bits (129), Expect = 1e-08
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQ 77
G + +I+GP+GAGK+TLL+ +S+ ++ D G+I ++GLE+ K L K+S + Q
Sbjct: 25 PKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSKELAKKLS-ILKQ 82
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
+ LTV + + R + E R ++ ++ L L + L+ LSGG+R
Sbjct: 83 ENHINSRLTVRD-LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQR 141
Query: 138 KRVALAVQTIIVQS 151
+R +A+ ++ Q
Sbjct: 142 QRAFIAM--VLAQD 153
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 54.2 bits (131), Expect = 1e-08
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
LS + G +AI+GP+GAGK+TLL ++ + + +++ G+
Sbjct: 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKI---------GYFD 391
Query: 77 QH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK--NSVLNVLS 133
QH D TV E ++ D + V A L G + + VLS
Sbjct: 392 QHRDELDPDKTVLEELS---EGFPDGDEQEVR------AYLGRFG-FTGEDQEKPVGVLS 441
Query: 134 GGERKRVALA 143
GGE+ R+ LA
Sbjct: 442 GGEKARLLLA 451
Score = 41.9 bits (99), Expect = 1e-04
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQI-LLNGLEVE---------KNLMVK---VSGF 74
++G +GAGK+TLL ++ ++ D G++ GL V V + GF
Sbjct: 33 GLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91
Query: 75 VPQHDLTVD-----TLTVHEHMTLMARL--KMDRNLHHVERARTVDALLKELGLLKCKNS 127
+L + L L+A L ++ AR + L LG ++
Sbjct: 92 GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR-AEEALLGLGFPD-EDR 149
Query: 128 VLNVLSGGERKRVALA 143
++ LSGG R+RVALA
Sbjct: 150 PVSSLSGGWRRRVALA 165
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 53.8 bits (130), Expect = 1e-08
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKV 71
+S G +A++GPSGAGK+TLL + + +G I +NG+ + + ++
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRDQI 398
Query: 72 SGFVPQHDLTVDTLTVHEHMTL----MARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
+VPQH T+ E++ L + ++ L V AL + L +
Sbjct: 399 -AWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG 456
Query: 128 VLNVLSGGERKRVALA 143
LSGG+ +R+ALA
Sbjct: 457 --AGLSGGQAQRLALA 470
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 53.2 bits (128), Expect = 1e-08
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN 66
L+G N + +S A+ G ++ +GP+GAGK+T + I+ + D G + + G +V +N
Sbjct: 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQN 69
Query: 67 LMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLL 122
+V G++P+H+ + V E++ +A + M L + V+ +++ +GL
Sbjct: 70 PK-EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL----LKQRVEEMIELVGLR 124
Query: 123 KCKNSVLNVLSGGERKRVALAVQTII 148
++ + LS G R+RV LA Q +I
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLA-QALI 149
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 53.4 bits (129), Expect = 1e-08
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFV 75
G + I+G SGAGK+TLL I+ ++ G + ++G ++ E L + G +
Sbjct: 30 PKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMI 88
Query: 76 PQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
QH + + TV E++ L + + E + V LL+ +GL + LSG
Sbjct: 89 FQHFNLLSSRTVFENVAFPLELAGVPKA----EIKQRVAELLELVGLSDKADRYPAQLSG 144
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 145 GQKQRVAIA 153
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 52.6 bits (127), Expect = 1e-08
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
G L + GPSGAGKTTLL + + GQ+ + G +V + L ++ G
Sbjct: 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQLPLLRRRI-GV 83
Query: 75 VPQHDLTVDTLTVHEH--MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
V Q + TV+E+ + L R K +R + R V A L+++GL ++ L
Sbjct: 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-----RRVGAALRQVGLEHKADAFPEQL 138
Query: 133 SGGERKRVALA 143
SGGE++RVA+A
Sbjct: 139 SGGEQQRVAIA 149
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 52.5 bits (126), Expect = 2e-08
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 20/147 (13%)
Query: 8 FGDTNY----KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
F + +Y KE L I+ E G++ I+GPSGAGK+TL+ I++ I +G IL++G
Sbjct: 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDG 64
Query: 61 LEVEKNLMV----KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
+++ K + V + G V Q + TV +++ LK ++N+ VE ++ L
Sbjct: 65 VDI-KTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNV-DVEYYLSIVGLN 121
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
KE KN LSGGE +RV++A
Sbjct: 122 KEYATRDVKN-----LSGGEAQRVSIA 143
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 52.5 bits (127), Expect = 2e-08
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACI---SQRIQGDV--DGQILLNGLEVEKNLMVKVSGFVPQH 78
G L ++G SG+GK+TL I + G + DG+ LL + + K V Q
Sbjct: 31 GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90
Query: 79 DLTV--DTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
++ +T+ E + L K+ + R V LL +GL + VLN
Sbjct: 91 PMSSLNPRMTIGEQIAEPLRIHGKLSK---KEARKEAVLLLLVGVGLPE---EVLNRYPH 144
Query: 132 -LSGGERKRVALA 143
LSGG+R+RVA+A
Sbjct: 145 ELSGGQRQRVAIA 157
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 53.1 bits (128), Expect = 2e-08
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--GFVPQHDLT 81
G + ++GPSG GKTTLL I+ + G I G ++ L + G V Q
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA-GTIYQGGRDI-TRLPPQKRDYGIVFQSYAL 87
Query: 82 VDTLTVHEHMT--LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
LTV +++ L R M R E A V LL +GL + LSGG+++R
Sbjct: 88 FPNLTVADNIAYGLKNR-GMGRA----EVAERVAELLDLVGLPGSERKYPGQLSGGQQQR 142
Query: 140 VALA 143
VALA
Sbjct: 143 VALA 146
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 52.2 bits (126), Expect = 2e-08
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
+ G ++GPSG GKTTLL I+ G+ILL+G ++ +P H
Sbjct: 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITN---------LPPHKRP 73
Query: 82 VDT----------LTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
V+T LTV E++ RLK + + E V L + L N +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKA----EIKERVAEALDLVQLEGYANRKPS 129
Query: 131 VLSGGERKRVALA 143
LSGG+++RVA+A
Sbjct: 130 QLSGGQQQRVAIA 142
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 53.0 bits (128), Expect = 2e-08
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--- 67
K +LS + ++G L A++G SGAGK+TLL + + G+I +NG+++ +L
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLR-DLSPE 391
Query: 68 -MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
K +V Q+ + T+ E++ L + D + + A LL+ + +
Sbjct: 392 AWRKQISWVSQNPY-LFAGTIRENILL---ARPDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 127 SVL----NVLSGGERKRVALA 143
+V+ LSGG+ +R+ALA
Sbjct: 448 TVIGEGGAGLSGGQAQRLALA 468
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 52.4 bits (126), Expect = 2e-08
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 15 ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMV 69
E+L GI AE G ++A++GP+GAGK+TL + ++ G++L+ G ++ +K ++
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLL 74
Query: 70 KVS---GFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
+V G V Q+ D + TV E +A ++ L E + V LK +G+ +
Sbjct: 75 EVRKTVGIVFQNPDDQLFAPTVEED---VAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE 131
Query: 126 NSVLNVLSGGERKRVALA 143
N + LSGG++KRVA+A
Sbjct: 132 NKPPHHLSGGQKKRVAIA 149
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 52.2 bits (126), Expect = 3e-08
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--GFV---- 75
G ++ ++GP+GAGKTTL I+ + G ++ G ++ +++ G
Sbjct: 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIARTFQ 86
Query: 76 ---PQHDLTV-DTLTV--HEHMTLMARLKMDRNLHHVERART-VDALLKELGLLKCKNSV 128
LTV + + V H + L L R AR LL+ +GL + +
Sbjct: 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP 146
Query: 129 LNVLSGGERKRVALA 143
LS G+++R+ +A
Sbjct: 147 AGNLSYGQQRRLEIA 161
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 52.3 bits (126), Expect = 3e-08
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
E G L ++GPSG+GKTT L I++ I+ G+IL++G ++ V++ G+V Q
Sbjct: 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDISDLDPVELRRKIGYVIQQ 83
Query: 79 DLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL--LKCKNSVLNVLSGG 135
LTV E++ + +L D+ + D LL +GL + + + LSGG
Sbjct: 84 IGLFPHLTVAENIATVPKLLGWDKE----RIKKRADELLDLVGLDPSEYADRYPHELSGG 139
Query: 136 ERKRVALA 143
+++RV +A
Sbjct: 140 QQQRVGVA 147
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 51.4 bits (123), Expect = 3e-08
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQHD 79
G ++AIMGPSGAGK+TLL I+ I+ G I +N + VS +++
Sbjct: 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
L LTV +++ L L L+ ++ + VDA +++G+ + + LSGG+R+R
Sbjct: 81 L-FAHLTVRQNIGL--GLHPGLKLNAEQQEKVVDA-AQQVGIADYLDRLPEQLSGGQRQR 136
Query: 140 VALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL------HHVERAR 189
VALA + + + +D L E + L+ +L +R HH+ AR
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 51.3 bits (124), Expect = 4e-08
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 10 DTNYKES--LSGI---AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLE 62
+ Y +S L G+ G ++A++G +GAGKTTLL I + G I +G +
Sbjct: 7 NAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRD 63
Query: 63 VEK---NLMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE 118
+ + + G+VP+ LTV E++ L A + +R ++ + +
Sbjct: 64 ITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYEL 118
Query: 119 LGLLKCKNSVL-NVLSGGERKRVALA 143
LK + L LSGGE++ +A+A
Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIA 144
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 51.8 bits (125), Expect = 5e-08
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGD---VDGQILLNGLEV-------EKNLMVKV 71
E G +L I+G SG+GK+TL + + G+++L+G ++ + L K
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 72 SGFVPQHDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL--KCKNS 127
+ Q +T +T+ + + RL E + LL+++GL + ++
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDR 150
Query: 128 VLNVLSGGERKRVALAVQTI 147
+ LSGG R+RV +A+
Sbjct: 151 YPHQLSGGMRQRVMIAMALA 170
Score = 49.1 bits (118), Expect = 4e-07
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG-----FVPQH 78
G L ++G SG+GK+TL ++ + G I+ +G +++ V Q
Sbjct: 317 GETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Query: 79 DLTVDTLTVHEHMT----LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
+L MT L L++ ER V LL+ +GL L+
Sbjct: 376 --PYSSLNP--RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL---PPEFLDRYPH 428
Query: 132 -LSGGERKRVALA 143
LSGG+R+RVA+A
Sbjct: 429 ELSGGQRQRVAIA 441
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 51.6 bits (124), Expect = 6e-08
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS----GFVPQHDL 80
A+ GPSG+GKT+L+ I+ + D G+I LNG ++ EK + + G+V Q
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
TV ++ M + ++ LL LSGGE++RV
Sbjct: 87 LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRV 137
Query: 141 ALA 143
A+
Sbjct: 138 AIG 140
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 51.1 bits (122), Expect = 7e-08
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
+G E+L+ G AI+GP+G GK+TLL +S R+ G + L+G ++
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYA 75
Query: 68 MVKVS---GFVPQHDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDALL 116
+V+ G + Q+ T +TV E H L R + E V +
Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEAVTKAM 128
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARL 176
+ G+ + ++ LSGG+R+R +A+ ++ Q + D L + + L+ L
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAM--VLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 177 -KMDRNLHHVERARTVDALLKELGLLKCRPADEL 209
+++R E+ T+ A+L +L CR A L
Sbjct: 187 SELNR-----EKGYTLAAVLHDLN-QACRYASHL 214
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 50.6 bits (121), Expect = 8e-08
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
G + AI+GPSG+GK+TLL I+ G++L+NG++V P D
Sbjct: 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDV---------TAAPPADRP 71
Query: 82 VDTL----TVHEHMTLMARLKMDRN----LHHVERARTVDALLKELGLLKCKNSVLNVLS 133
V L + H+T+ + + + L +R ++ L +GL + + LS
Sbjct: 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQA-IEVALARVGLAGLEKRLPGELS 130
Query: 134 GGERKRVALA 143
GGER+RVALA
Sbjct: 131 GGERQRVALA 140
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 50.3 bits (121), Expect = 8e-08
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
FG+ + L+ G + ++GPSG GKTT L I+ + G+I + G +V
Sbjct: 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLP 68
Query: 64 --EKNL-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
++++ MV + + H +TV++++ +L+ ER R V LL+
Sbjct: 69 PKDRDIAMVFQNYALYPH------MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH 122
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
LL K LSGG+R+RVAL
Sbjct: 123 LLDRKPK---QLSGGQRQRVALG 142
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 50.5 bits (121), Expect = 9e-08
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 35/150 (23%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACI-------SQRIQ-GDV--DGQILLNGLEV 63
L GI + G ++AI+GPSG+GKTTLL CI + I+ GD+ D L+
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ--- 75
Query: 64 EKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-------KMDRNLHHVERARTVD 113
+K L+ ++ GFV Q + H T++ + K + RAR
Sbjct: 76 QKGLIRQLRQHVGFVFQ------NFNLFPHRTVLENIIEGPVIVKGEPKEEATARAR--- 126
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALA 143
LL ++GL + S LSGG+++RVA+A
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 50.2 bits (121), Expect = 1e-07
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVEKNLMVKVS------ 72
E G ++A++G +GAGKTTLL I R + G+I+ +G ++ +
Sbjct: 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITG---LPPHERARLG 79
Query: 73 -GFVPQHDLTVDTLTVHEH--MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
+VP+ LTV E+ + AR + +E + LKE +N
Sbjct: 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER-----RNQRA 134
Query: 130 NVLSGGERKRVALA 143
LSGGE++ +A+A
Sbjct: 135 GTLSGGEQQMLAIA 148
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 50.3 bits (121), Expect = 1e-07
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 8 FGDTNYK-ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
FGDT K +L ++ G + I+G SGAGK+TL+ CI+ + G +L++G ++
Sbjct: 11 FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDL 69
Query: 64 ----EKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDAL 115
K L K G + QH + + TV E++ L + + + E V L
Sbjct: 70 TLLSGKEL-RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA----EIEERVLEL 124
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L+ +GL ++ LSGG+++RV +A
Sbjct: 125 LELVGLEDKADAYPAQLSGGQKQRVGIA 152
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 49.9 bits (120), Expect = 1e-07
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVP 76
LS +G L + GP+G+GKTTLL I+ + G I L+G +++ + + ++
Sbjct: 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIA-GLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
+ LTV E++ A L + A L+ +GL + LS G+
Sbjct: 80 HRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLAHLPFGYLSAGQ 132
Query: 137 RKRVALA 143
++RVALA
Sbjct: 133 KRRVALA 139
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 50.7 bits (121), Expect = 1e-07
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQ 77
A++G +AI+GP+GAGKTTL+ + QR+ GQIL++G++ V + + K V Q
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHH-VERARTVDALLKEL-GLLKCKNSVLNVLSGG 135
D + ++ E++ L D ++ + A D +LK G N LSGG
Sbjct: 417 -DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475
Query: 136 ERKRVALA 143
ER+R+A+A
Sbjct: 476 ERQRLAIA 483
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 49.7 bits (119), Expect = 2e-07
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN-LMVKVS- 72
+ +S + G + ++GP+GAGKTT L ++ ++ D G ++G +V K +
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRL 80
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR---TVDALLKELGLLKCKNSVL 129
GFV D LT E++ A L+ ++ ++ L LG+ + + +
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAG------LYGLKGDELTARLEELADRLGMEELLDRRV 134
Query: 130 NVLSGGERKRVALA 143
S G R++VA+A
Sbjct: 135 GGFSTGMRQKVAIA 148
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 50.3 bits (121), Expect = 2e-07
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 27/148 (18%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
F +L +G L ++GPSG GKTT+L I+ D G+I+L+G ++
Sbjct: 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITH-- 80
Query: 68 MVKVSGFVPQHDLTVDTL----TVHEHMTLMAR----LKMDRNLHHVERARTVDAL---- 115
VP + V+T+ + HMT+ L+M + R ++AL
Sbjct: 81 -------VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ 133
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L+E K LSGG+++RVA+A
Sbjct: 134 LEEFAQRKPHQ-----LSGGQQQRVAIA 156
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 50.2 bits (120), Expect = 2e-07
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FGDT + + GSL+ ++GP+GAGKTTLL I+ + G +L+ G +VE
Sbjct: 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVEALS 71
Query: 68 MVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH------HVERART-VDALLK 117
S VPQ DT ++ + ++M R H E R V+ ++
Sbjct: 72 ARAASRRVASVPQ-----DT-SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME 125
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
G+ + + + LSGGER+RV LA
Sbjct: 126 RTGVAQFADRPVTSLSGGERQRVLLA 151
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 48.7 bits (117), Expect = 2e-07
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 43/127 (33%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV-----KVSGFVP 76
E+G ++A++GPSG+GK+TLL CI+ + D G IL++G ++ + G V
Sbjct: 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
Q LTV E++ L LSGG+
Sbjct: 83 QDFALFPHLTVLENIAL-------------------------------------GLSGGQ 105
Query: 137 RKRVALA 143
++RVALA
Sbjct: 106 QQRVALA 112
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 49.2 bits (118), Expect = 2e-07
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVE---KNLMVKVS---G 73
G ++ + GPSG+GKTTLL I + +Q +G + + G E+ + +V++ G
Sbjct: 29 NPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIG 85
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ Q + LT +++ + L+ NL + E A+L+ +GL + + LS
Sbjct: 86 YIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLS 143
Query: 134 GGERKRVALA 143
GG+++RVA+A
Sbjct: 144 GGQKQRVAIA 153
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 49.8 bits (119), Expect = 2e-07
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Query: 5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
+ G +++ IA S +A++GP+GAGK+TL + I G +L+ G +
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPTSGSVLIRGEPIT 69
Query: 65 KNLMVKVSGFV----PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
K + +V FV D + + TV + + A ++ L A V + L LG
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDI---AFGPINLGLDEETVAHRVSSALHMLG 126
Query: 121 LLKCKNSVLNVLSGGERKRVALA 143
L + ++ V + LSGGE+KRVA+A
Sbjct: 127 LEELRDRVPHHLSGGEKKRVAIA 149
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 49.7 bits (119), Expect = 2e-07
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--- 64
FG T +S SG ++A++GPSG+GKTTLL I+ ++ G I +G +V
Sbjct: 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLH 70
Query: 65 -KNLMVKVSGFVPQHDLTVDTLTVHEH----MTLMARLKMDRNLHHVERARTVDALLKEL 119
++ V GFV QH +TV ++ +T++ R + R +A+ V LL+ +
Sbjct: 71 ARDRKV---GFVFQHYALFRHMTVFDNIAFGLTVLPRRE--RPNAAAIKAK-VTQLLEMV 124
Query: 120 GLLKCKNSVLNVLSGGERKRVALA 143
L + LSGG+++RVALA
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALA 148
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 49.7 bits (119), Expect = 2e-07
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FGD +++S G + ++GP+GAGKTT I ++ +G+I NG + + +
Sbjct: 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQEI 70
Query: 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKN 126
++ G++P+ +TV + + +A LK M + E + + A L+ L ++ K
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGMPKA----EIQKKLQAWLERLEIVGKKT 125
Query: 127 SVLNVLSGGERKRVAL 142
+ LS G ++++
Sbjct: 126 KKIKELSKGNQQKIQF 141
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 157
Score = 48.0 bits (115), Expect = 3e-07
Identities = 20/59 (33%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQ 77
++G ++A++GP+G+GK+TLL I+ + G+IL++G ++ K + ++ G+VPQ
Sbjct: 23 KAGEIVALVGPNGSGKSTLLRAIA-GLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
Score = 28.4 bits (64), Expect = 1.8
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 132 LSGGERKRVALA 143
LSGG+R+RVALA
Sbjct: 81 LSGGQRQRVALA 92
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 49.2 bits (117), Expect = 4e-07
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-VDGQILLNGLEV------EKNL 67
+ LS E+G LLA++G SG GKTTLL I+ ++ + G+I + ++ ++ L
Sbjct: 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81
Query: 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
+ Q+ L V +++ R + + + A V LK +GL
Sbjct: 82 -----ALLFQNYALFPHLKVEDNVAFGLRA---QKMPKADIAERVADALKLVGLGDAAAH 133
Query: 128 VLNVLSGGERKRVALA 143
+ LSGG ++R+A+A
Sbjct: 134 LPAQLSGGMQQRIAIA 149
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 48.6 bits (116), Expect = 6e-07
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL--- 85
++GPSG GKTTLL ++ Q D G I+L+G +V VP H ++ +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTN---------VPPHLRHINMVFQS 50
Query: 86 -TVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 140
+ HMT+ LKM R + E V L+ + L + + + LSGG+++RV
Sbjct: 51 YALFPHMTVEENVAFGLKM-RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109
Query: 141 ALA 143
ALA
Sbjct: 110 ALA 112
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 48.0 bits (115), Expect = 6e-07
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQ 77
+ G +AI+GP+GAGKTTL+ + R GQIL++G++ + + + + G V Q
Sbjct: 26 IKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG-------LLKCKNSVLN 130
T+M +++ R E V KE G L ++VL
Sbjct: 85 DTFLFSG-------TIMENIRLGRPNATDEE---VIEAAKEAGAHDFIMKLPNGYDTVLG 134
Query: 131 ----VLSGGERKRVALA 143
LS GER+ +A+A
Sbjct: 135 ENGGNLSQGERQLLAIA 151
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 48.9 bits (117), Expect = 6e-07
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSG 73
+S G +AI+GPSG+GK+TLLA + + + G++ L+G+ ++++ + +
Sbjct: 354 VSLDLPPGERVAILGPSGSGKSTLLATL-AGLLDPLQGEVTLDGVPVSSLDQDEVRRRVS 412
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-ERARTVDALLKEL--GLLKCKNSVLN 130
Q DT TV E++ L D L ER D L+ L GL ++VL
Sbjct: 413 VCAQDAHLFDT-TVRENLRLARPDATDEELWAALERVGLAD-WLRALPDGL----DTVLG 466
Query: 131 ----VLSGGERKRVALA 143
LSGGER+R+ALA
Sbjct: 467 EGGARLSGGERQRLALA 483
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 48.6 bits (116), Expect = 6e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVSGFVPQHDLTVDT 84
AI G SG+GKTTL+ I+ + D G+I+LNG + K + F+P +
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDE-GEIVLNGRTLFDSRKGI------FLPPEKRRIG- 78
Query: 85 LTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKELGLLKCKNSVLNVLSGGER 137
V + L L + NL + ER + + +++ LG+ + LSGGE+
Sbjct: 79 -YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEK 137
Query: 138 KRVALA 143
+RVA+
Sbjct: 138 QRVAIG 143
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 48.0 bits (115), Expect = 7e-07
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK--VSGFVPQH 78
E G +AI+GPSGAGK+TLL I+ + G + LNG + + VS ++
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
+L LTV +++ L L L+ +R + A+ +++G+ + LSGG+R+
Sbjct: 81 NL-FSHLTVAQNIGL--GLNPGLKLNAAQR-EKLHAIARQMGIEDLLARLPGQLSGGQRQ 136
Query: 139 RVALA 143
RVALA
Sbjct: 137 RVALA 141
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 48.1 bits (115), Expect = 7e-07
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 31/192 (16%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVEK-------NLMV 69
IAE G + ++G +GAGK+TLL I+ GD+ GQIL++G++V K NL+
Sbjct: 29 IAE-GDFVTVIGSNGAGKSTLLNAIA----GDLKPTSGQILIDGVDVTKKSVAKRANLLA 83
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD---ALLKEL--GLLKC 124
+V F T LT+ E++ L R L R L L GL
Sbjct: 84 RV--FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR 141
Query: 125 KNSVLNVLSGGERKRVALAVQTIIVQSG--FVPQHDLTVDTLTVHEHMTLMARLKMDRNL 182
+ + +LSGG+R+ ++L + T + + +H +D T M L A++ + L
Sbjct: 142 LSDRIGLLSGGQRQALSLLMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 183 ------HHVERA 188
H++E A
Sbjct: 201 TTLMVTHNMEDA 212
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 47.8 bits (114), Expect = 8e-07
Identities = 56/164 (34%), Positives = 73/164 (44%), Gaps = 37/164 (22%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-----------LEVEKNL-MVKV 71
G + AIMGPSG GKTTLL I +I D G+IL +G V K + M+
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRLYTVRKRMSMLFQ 91
Query: 72 SG--FVPQHDLTV-DTLT--VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
SG F D+ V D + + EH L A L LH TV L+ +GL
Sbjct: 92 SGALFT---DMNVFDNVAYPLREHTQLPAPL-----LH-----STVMMKLEAVGLRGAAK 138
Query: 127 SVLNVLSGGERKRVALA------VQTIIVQSGFVPQHDLTVDTL 164
+ + LSGG +R ALA I+ FV Q +T+ L
Sbjct: 139 LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.4 bits (113), Expect = 1e-06
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
ESG LL ++GPSG GKTTLL I+ + G I L+G VE + G V Q++
Sbjct: 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAER--GVVFQNEGL 81
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
+ V +++ +L + ++R +LK++GL + + LSGG+R+RV
Sbjct: 82 LPWRNVQDNVAFGLQL---AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG 138
Query: 142 LA 143
+A
Sbjct: 139 IA 140
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 47.1 bits (112), Expect = 1e-06
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--- 72
LSG +G +L ++GP+GAGK+TLLA ++ G G I G +E +++
Sbjct: 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELARHR 74
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
++ Q + V ++TL + R ++ + L L N L
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTL--------HQPDKTRTELLNDVAGALALDDKLGRSTNQL 126
Query: 133 SGGERKRVALA 143
SGGE +RV LA
Sbjct: 127 SGGEWQRVRLA 137
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 47.4 bits (113), Expect = 1e-06
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 20/147 (13%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS--QRIQGD---VDGQILLNGLE 62
FG T ++ + G ++ I+GPSG+GK+TLL CI+ + I VDG + +N +
Sbjct: 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPK 69
Query: 63 VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA------LL 116
V++ L+ + +G V Q LT E++ V A +A LL
Sbjct: 70 VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL--------RVRGASKEEAEKQARELL 121
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
++GL + + + LSGG+++RVA+A
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIA 148
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 47.5 bits (114), Expect = 1e-06
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS--------GFV 75
G + A++G +GAGK+TL+ + Q D G+I ++G EV +K G V
Sbjct: 30 GEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVR----IKSPRDAIRLGIGMV 84
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
QH + V TLTV E++ L + + + L + GL ++ + LS G
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVG 144
Query: 136 ERKRV 140
E++RV
Sbjct: 145 EQQRV 149
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 47.0 bits (112), Expect = 2e-06
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 35/166 (21%)
Query: 2 ETFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61
E H +G+ + +S A +G +++I+G SG+GK+T L CI+ ++ G I +NG
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGE 68
Query: 62 EV----------------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR--------L 97
E+ + + G V QH + HMT++ L
Sbjct: 69 EIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH------FNLWSHMTVLENVIEAPVHVL 122
Query: 98 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+ + +ERA L ++G+ + ++ LSGG+++RVA+A
Sbjct: 123 GVSKA-EAIERAE---KYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 46.6 bits (111), Expect = 2e-06
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-------NLMVKVS 72
G ++AI+G SG+GK+TLL + G +D G++L NG + K L K
Sbjct: 31 GEIVAIVGSSGSGKSTLL-----HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKL 85
Query: 73 GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
GF+ Q H L D T E++ + + ERA +L+++GL N +
Sbjct: 86 GFIYQFHHLLPD-FTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGLEHRINHRPSE 141
Query: 132 LSGGERKRVALA 143
LSGGER+RVA+A
Sbjct: 142 LSGGERQRVAIA 153
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 46.3 bits (111), Expect = 2e-06
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
LF LS +G L+ I GP+GAGKT+LL ++ + D G++L G +
Sbjct: 14 RILF------SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIR 66
Query: 65 KNLMVKVSGFVPQHDLTV--------DTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
+ DL LT E++ RL + +AL
Sbjct: 67 RQ------RDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH-----GPGDDEALWEALA 115
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
+ +GL ++ + LS G+++RVALA
Sbjct: 116 Q-VGLAGFEDVPVRQLSAGQQRRVALA 141
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 47.4 bits (113), Expect = 2e-06
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 18/139 (12%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKV 71
S+S + E G +A++G SG+GK+TL+ I + + D GQILL+G ++ +L +V
Sbjct: 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYTLASLRRQV 408
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-------VDALLKELGLLKC 124
+ V Q + + T+ ++ + DR +ERA VD L L
Sbjct: 409 A-LVSQDVVLFND-TIANNIAYGRTEQADR--AEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 125 KNSVLNVLSGGERKRVALA 143
+N VL LSGG+R+R+A+A
Sbjct: 465 ENGVL--LSGGQRQRLAIA 481
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 46.5 bits (111), Expect = 2e-06
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
G + IMG SG+GK+TLL CI++ I+ G++L++G ++ L K
Sbjct: 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISM 106
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
V Q + TV E++ + + + ER L+ +GL ++ + LSG
Sbjct: 107 VFQSFALLPHRTVLENVAFGLEV---QGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 135 GERKRVALA 143
G ++RV LA
Sbjct: 164 GMQQRVGLA 172
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 45.7 bits (109), Expect = 3e-06
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 45/125 (36%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQH 78
E G LAI+GPSG+GK+TL I ++ G++ L+G ++ + N + G++PQ
Sbjct: 26 EPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQD 84
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
D ++ E N+LSGG+R+
Sbjct: 85 DELFSG-SIAE----------------------------------------NILSGGQRQ 103
Query: 139 RVALA 143
R+ LA
Sbjct: 104 RLGLA 108
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 46.1 bits (110), Expect = 3e-06
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG---LEVEKNLMVKVS 72
LS +G +L ++GP+GAGK+TLLA ++ + G G I G + +
Sbjct: 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHR 71
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
++ Q + V +++T L A ++ + + LGL +N L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQL 127
Query: 133 SGGERKRVALA 143
SGGE +RV LA
Sbjct: 128 SGGEWQRVRLA 138
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 46.4 bits (110), Expect = 3e-06
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFVPQ 77
G + ++G SGAGK+TL+ C++ ++ G ++++G ++ L + G + Q
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNL-LERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
H + + TV ++ L L N E R V LL +GL +S + LSGG++
Sbjct: 90 HFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQK 146
Query: 138 KRVALA 143
+RVA+A
Sbjct: 147 QRVAIA 152
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 45.8 bits (109), Expect = 3e-06
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--NLMVKVS 72
E LS +G L + GP+G GKTTLL ++ + G++ NG + + + +
Sbjct: 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPDSGEVRWNGTALAEQRDEPHRNI 75
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
++ L+ E++ A + H RT++ L +GL ++ L
Sbjct: 76 LYLGHLPGLKPELSALENLHFWAAI-------HGGAQRTIEDALAAVGLTGFEDLPAAQL 128
Query: 133 SGGERKRVALA 143
S G+++R+ALA
Sbjct: 129 SAGQQRRLALA 139
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 45.7 bits (109), Expect = 4e-06
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL--- 67
K L I+ + G + +GP+GAGKTT + I I+ D G+I +G +KN+
Sbjct: 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITFDGKSYQKNIEAL 71
Query: 68 -----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 122
+++ GF P LT E++ L+ARL R + +D +L +GL
Sbjct: 72 RRIGALIEAPGFYPN-------LTARENLRLLARLLGIRK-------KRIDEVLDVVGLK 117
Query: 123 KCKNSVLNVLSGGERKRVALA 143
+ S G ++R+ +A
Sbjct: 118 DSAKKKVKGFSLGMKQRLGIA 138
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 46.0 bits (110), Expect = 4e-06
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG---LEVEKN 66
KE L G+ + G + AIMGP+G+GK+TL I + +V +G+IL +G LE+ +
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76
Query: 67 LMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKC 124
+ F+ Q+ + + +T + + + E + + + LGL +
Sbjct: 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 125 KNSVLNV-LSGGERKRVALA 143
+N SGGE+KR +
Sbjct: 137 LERYVNEGFSGGEKKRNEIL 156
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 45.8 bits (109), Expect = 4e-06
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQH 78
G L ++GPSG+GKTT + I++ I+ G+I ++G ++ + V++ G+V Q
Sbjct: 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPT-SGEIFIDGEDIREQDPVELRRKIGYVIQQ 83
Query: 79 DLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGL--LKCKNSVLNVLSGG 135
+TV E++ L+ +L K + + D LL +GL + + + LSGG
Sbjct: 84 IGLFPHMTVEENIALVPKLLKWPKE----KIRERADELLALVGLDPAEFADRYPHELSGG 139
Query: 136 ERKRVALA 143
+++RV +A
Sbjct: 140 QQQRVGVA 147
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 46.2 bits (110), Expect = 4e-06
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-------NLMVKVSGF 74
E G + IMG SG+GK+TL+ ++ R+ G+IL++G ++ K L K
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLLN-RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
V Q + TV E++ + + + ER L+ +GL + N LSG
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEV---QGVPKAEREERALEALELVGLEGYADKYPNELSG 167
Query: 135 GERKRVALA 143
G ++RV LA
Sbjct: 168 GMQQRVGLA 176
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 45.6 bits (109), Expect = 4e-06
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVS-GFVP 76
G + ++G +G GKTTLL + + G I L+G ++ K + + +VP
Sbjct: 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVP 81
Query: 77 QHDLTVDTLTVHEH-MTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLS 133
Q LTV E+ +T +A L R+R + + EL L + LS
Sbjct: 82 QGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEMLGRRGGDLS 133
Query: 134 GGERKRVALA 143
GG+++++A+A
Sbjct: 134 GGQQQQLAIA 143
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 45.5 bits (108), Expect = 6e-06
Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FG ++L+ + G+++ ++GPSG GKTT+L ++ ++ +GQI ++G +V
Sbjct: 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRS 74
Query: 68 MVKVSGFVPQHDLTV--DTLTVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGL 121
+ Q D+ + + + HM+L LKM + ER + V L+ + L
Sbjct: 75 -------IQQRDICMVFQSYALFPHMSLGENVGYGLKM-LGVPKEERKQRVKEALELVDL 126
Query: 122 LKCKNSVLNVLSGGERKRVALA 143
++ ++ +SGG+++RVALA
Sbjct: 127 AGFEDRYVDQISGGQQQRVALA 148
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 44.9 bits (106), Expect = 8e-06
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQHD 79
G +AI GPSG GK+TLL ++ I G +L G +V + +VS
Sbjct: 29 GEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-LKCKNSVLNVLSGGERK 138
L D TV +++ +++ R +RA +D LL L + LSGGE++
Sbjct: 88 LFGD--TVEDNLIFPWQIRNRR----PDRAAALD-LLARFALPDSILTKNITELSGGEKQ 140
Query: 139 RVALAVQ 145
R+AL
Sbjct: 141 RIALIRN 147
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 45.4 bits (107), Expect = 8e-06
Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH-DL 80
E G + IMG SG+GK+T++ +++ I+ GQ+L++G+++ K ++ + +
Sbjct: 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHV----ERARTVDALLKELGLLKCKNSVLNVLSGGE 136
+ + HMT++ L + R + +DA L+++GL +S + LSGG
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDA-LRQVGLENYAHSYPDELSGGM 169
Query: 137 RKRVALA 143
R+RV LA
Sbjct: 170 RQRVGLA 176
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 45.5 bits (108), Expect = 9e-06
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 34/148 (22%)
Query: 16 SLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMV 69
+L G+ G +A++GPSGAGK+TL + R G+ILL+G+ +++ +
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLL-LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA--------------RTVDAL 115
VPQ D + +V E++ + D VE A D
Sbjct: 414 ARMALVPQ-DPVLFAASVMENIRYG---RPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L E G+ LSGG+R+R+A+A
Sbjct: 470 LGERGV---------TLSGGQRQRIAIA 488
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 44.8 bits (106), Expect = 1e-05
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-------GF 74
G + IMG SG+GK+T + +++ I+ GQI ++G + K V++ G
Sbjct: 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
V Q +T+ ++ +L L E+A LLK +GL + ++ + LSG
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALE---LLKLVGLEEYEHRYPDELSG 132
Query: 135 GERKRVALA 143
G ++RV LA
Sbjct: 133 GMQQRVGLA 141
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 44.0 bits (104), Expect = 1e-05
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 15 ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---KNLM 68
E L G+ AE G +LA++G +GAGK+TLL ++ ++ G +L++G ++ K L+
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLL 64
Query: 69 ---VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
+V D + V + + + L E R V L +G +
Sbjct: 65 ERRQRVGLVFQDPDDQLFAADVDQDVAFGPL---NLGLSEAEVERRVREALTAVGASGLR 121
Query: 126 NSVLNVLSGGERKRVALA 143
+ LSGGE+KRVA+A
Sbjct: 122 ERPTHCLSGGEKKRVAIA 139
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 44.8 bits (106), Expect = 1e-05
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK--------NLMVKVSGFV 75
G + A++G SG GK+TLL ++ + GQI+L+G+++ N+M +
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALF 103
Query: 76 PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGG 135
P +TV +++ LK D+ L E A V+ +L + + + + LSGG
Sbjct: 104 PH-------MTVEQNIAF--GLKQDK-LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGG 153
Query: 136 ERKRVALA 143
+R+RVALA
Sbjct: 154 QRQRVALA 161
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 44.2 bits (105), Expect = 1e-05
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 2 ETFHPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACI--------SQRIQG 50
E + +G+ KE+L I + A++GPSG GK+TLL + RI+G
Sbjct: 5 ENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 51 DV--DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 108
V DGQ + + +++ + + G V Q +++++++ RL ++ ++
Sbjct: 62 KVLFDGQDIYDK-KIDVVELRRRVGMVFQK-PNPFPMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 109 ARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 143
V+ LK+ L L+ LSGG+++R+ +A
Sbjct: 120 I--VEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 44.4 bits (106), Expect = 2e-05
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-----GFVP 76
G + A++G +GAGK+TL+ +S D G+IL++G V + + V
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVA-FSSPRDALAAGIATVH 89
Query: 77 QHDLTVDTLTVHEHMTLMARLK-----MDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
Q V L+V E++ L +DR RAR LL LGL ++++
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR-RRAR---ELLARLGLDIDPDTLVGD 145
Query: 132 LSGGERKRVALA 143
LS +R+ V +A
Sbjct: 146 LSIAQRQMVEIA 157
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 43.9 bits (103), Expect = 2e-05
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLEVEKNLMVKVS---GF 74
+ S+ IMGPSG+GK+TLL +++ I+ VDG++L G ++ + +K+ G
Sbjct: 35 NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
V Q L++++++ LK E + V+ L+++GL K LN
Sbjct: 95 VFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152
Query: 132 -LSGGERKRVALA 143
LSGG+++R+ +A
Sbjct: 153 QLSGGQQQRLTIA 165
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 44.1 bits (104), Expect = 2e-05
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 15 ESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---KNLM 68
+L GI + G + AI+G +GAGK+TL ++ I G+IL +G ++ K LM
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKPSSGRILFDGKPIDYSRKGLM 78
Query: 69 --VKVSGFV---PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
+ G V P + L + +V++ ++ A ++ L E + VD LK G+
Sbjct: 79 KLRESVGMVFQDPDNQLF--SASVYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEH 133
Query: 124 CKNSVLNVLSGGERKRVALA 143
K+ + LS G++KRVA+A
Sbjct: 134 LKDKPTHCLSFGQKKRVAIA 153
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 44.3 bits (105), Expect = 2e-05
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQHDL 80
G LAI+GPSG+GK+TL I I G + L+G + ++ K G++PQ D+
Sbjct: 344 GEALAIIGPSGSGKSTLARLIVG-IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DV 401
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHH---VERARTVDALLKELGLLKCKNSVLNV----LS 133
+ TV E+ +AR N +E A+ L L ++V+ LS
Sbjct: 402 ELFPGTVAEN---IAR--FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456
Query: 134 GGERKRVALA 143
GG+R+R+ALA
Sbjct: 457 GGQRQRIALA 466
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 43.8 bits (103), Expect = 2e-05
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDG----QILLNGLEVEKNLMVKV------ 71
G ++A++GPSG+GK+TLL +S I GD ++L ++ E L +
Sbjct: 28 HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMD------RNLHHVERARTVDALLKELGLLKCK 125
+G++ Q V+ L+V E++ + A ++ R + AL + +G++
Sbjct: 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR-VGMVHFA 146
Query: 126 NSVLNVLSGGERKRVALA 143
+ ++ LSGG+++RVA+A
Sbjct: 147 HQRVSTLSGGQQQRVAIA 164
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.7 bits (103), Expect = 2e-05
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD--- 79
GS+ A++G +G+GK+TL + ++ G+I + G + L + +VPQ +
Sbjct: 32 GGSIAALVGVNGSGKSTLFKALMGFVRL-ASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 80 -----LTVDTLTV--HEHMTLMARLKM-DRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
L D + + + HM + R K DR + V A L + +++ ++ +
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI--------VTAALARVDMVEFRHRQIGE 142
Query: 132 LSGGERKRVALAVQTIIVQSGFV 154
LSGG++KRV LA I Q G V
Sbjct: 143 LSGGQKKRVFLA--RAIAQQGQV 163
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 43.9 bits (104), Expect = 2e-05
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEV----EKNLMVKVSGF 74
G +AI+G SG+GK+TLL Q + G D G I LNG+E+ E+ L +S
Sbjct: 362 AQGEKVAILGRSGSGKSTLL----QLLAGAWDPQQGSITLNGVEIASLDEQALRETIS-V 416
Query: 75 VPQHDLTVDTLTVHEHMTL---------MARLKMDRNLHHVERARTVDALLKELGLLKCK 125
+ Q T+ +++ L + L + + D L LG +
Sbjct: 417 LTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAP-DGLNTWLGEGGRR 474
Query: 126 NSVLNVLSGGERKRVALA 143
LSGGER+R+ALA
Sbjct: 475 ------LSGGERRRLALA 486
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 43.7 bits (104), Expect = 3e-05
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNG---LEVEKNLMVKVSG- 73
+ G +L I+G SG+GK+ L I + V G+IL +G L + + + K+ G
Sbjct: 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGK 88
Query: 74 ---FVPQHDLTV--DTLTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ Q +T +T+ + + L K ERA LL+ +G +
Sbjct: 89 EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELVG-IPDPE 144
Query: 127 SVLNV----LSGGERKRVALA 143
L LSGG R+RV +A
Sbjct: 145 RRLKSYPHELSGGMRQRVMIA 165
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.7 bits (100), Expect = 4e-05
Identities = 43/164 (26%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR----IQGDVDGQI 56
+E + FG + + +S S+ AI+GPSG GK+T+L I++ V G+I
Sbjct: 7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66
Query: 57 LLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
LL+ ++ + VS G V Q ++++++ ++A K++ ++ E
Sbjct: 67 LLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDN--VIAGYKLNGRVNRSEADEI 124
Query: 112 VDALLKELGLL-----KCKNSVLNVLSGGERKRVALAVQTIIVQ 150
V++ LK + L + K++ + LSGG+++R+ +A +TI V+
Sbjct: 125 VESSLKRVALWDEVKDRLKSNAME-LSGGQQQRLCIA-RTIAVK 166
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 42.5 bits (101), Expect = 5e-05
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 21/135 (15%)
Query: 28 AIMGPSGAGKTTLLACI--------SQRIQGDV--DGQILLNGLEVEKNLMVKVSGFVPQ 77
A++GPSG GK+TLL C+ R++G+V DG+ + + +V+ + + G V Q
Sbjct: 37 ALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP-KVDVVELRRRVGMVFQ 95
Query: 78 HDLTVDTLTVHEHMTLMARL--KMDRNLHH-VERARTVDALLKELGLLKCKNSVLNVLSG 134
+++++++ RL D+ L VE + AL E+ + S L LSG
Sbjct: 96 K-PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-DRLHKSALG-LSG 152
Query: 135 GERKRV----ALAVQ 145
G+++R+ ALAV+
Sbjct: 153 GQQQRLCIARALAVK 167
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.6 bits (100), Expect = 5e-05
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDGQI 56
+E F +G+ ++++ + AI+GPSG GKTTLL I++ I G V+G+I
Sbjct: 6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65
Query: 57 LLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 111
G ++ K G V Q +++++++ R+ ++ H ++ R
Sbjct: 66 YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLD--RI 122
Query: 112 VDALLKELGLLKCKNSVLN----VLSGGERKRVALA 143
V+ LK+ L S LN LSGG+++R+ +A
Sbjct: 123 VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 42.5 bits (100), Expect = 5e-05
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQ 77
A GSL ++GP+G+GK+TLL ++ ++ D G + L G+++ + + V Q
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARARRVALVEQ 82
Query: 78 HDLTVDTLTVHE--------HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
T LTV + H +L A A VD L L + +
Sbjct: 83 DSDTAVPLTVRDVVALGRIPHRSLWA-------GDSPHDAAVVDRALARTELSHLADRDM 135
Query: 130 NVLSGGERKRVALA 143
+ LSGGER+RV +A
Sbjct: 136 STLSGGERQRVHVA 149
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 42.8 bits (101), Expect = 7e-05
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 5 HPLFGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61
+ F K L I E G +AI+GPSG+GK+TL+ + + G+IL++G+
Sbjct: 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGI 391
Query: 62 EVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
++ +L ++ G V Q L T+ E++ L D + + +A
Sbjct: 392 DIRDISLDSLRKRI-GIVSQDPLLFSG-TIRENIALGRPDATDEEIEEA--LKLANAHEF 447
Query: 118 ELGLLKCKNSVLNV----LSGGERKRVALA 143
L ++++ LSGG+R+R+A+A
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 41.7 bits (98), Expect = 8e-05
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG- 73
LS +G L + GP+G+GKTTLL ++ G++LLNG ++ G
Sbjct: 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQRDSIARGL 75
Query: 74 -FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
++ TL+V E++ D V+ L +GL ++ + L
Sbjct: 76 LYLGHAPGIKTTLSVLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQL 126
Query: 133 SGGERKRVALA 143
S G+++RVALA
Sbjct: 127 SAGQQRRVALA 137
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 41.8 bits (99), Expect = 1e-04
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQH 78
G +AI+G SG+GK+TLL + + G+ILL+G+ +++ + + G+V Q
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLL-LGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL--GLLKCKNSVLNVLSGGE 136
++ E++ L D + + ++ L G LSGG+
Sbjct: 556 PFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614
Query: 137 RKRVALA 143
R+R+ALA
Sbjct: 615 RQRLALA 621
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 40.4 bits (94), Expect = 1e-04
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
G ++ I+GP G+GKTTL +++ + G I ++G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 41.7 bits (99), Expect = 2e-04
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 37/130 (28%)
Query: 24 GSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ--- 77
G ++ I+GP+G GKTT LLA + + +G+VD + +K+S + PQ
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS-YKPQYIK 410
Query: 78 --HDLTVDTLTVHEHMTLM-ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
+D TV+ L L + + + E ++K L L + + + LSG
Sbjct: 411 PDYDGTVEDL-------LRSITDDLGSSYYKSE-------IIKPLQLERLLDKNVKDLSG 456
Query: 135 GERKRVALAV 144
GE +RVA+A
Sbjct: 457 GELQRVAIAA 466
Score = 35.2 bits (82), Expect = 0.022
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 38/146 (26%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVD-------------GQILLNGLEV 63
I + G + I+GP+G GKTT + +S + GD + G L N +
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154
Query: 64 EKNLMVKVSGFVPQHDLTVDTL------TVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
N +KV PQ+ VD + V E + K+D ER + +D +++
Sbjct: 155 LYNGEIKVV-HKPQY---VDLIPKVFKGKVRELLK-----KVD------ERGK-LDEVVE 198
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
LGL + ++ LSGGE +RVA+A
Sbjct: 199 RLGLENILDRDISELSGGELQRVAIA 224
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 41.1 bits (96), Expect = 2e-04
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
+GD LS G ++GP+GAGK+T+ + I D +L +
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRAR 73
Query: 68 MVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ +V+ G VPQ D TV E++ + R + E + +LL+ L +
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRY---FGMSTREIEAVIPSLLEFARLESKAD 130
Query: 127 SVLNVLSGGERKRVALAVQTI 147
+ +LSGG ++R+ LA I
Sbjct: 131 VRVALLSGGMKRRLTLARALI 151
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 40.9 bits (96), Expect = 2e-04
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQHD 79
G + ++G +G+GK+TLL + R Q +G+ILL+ +E K KV+ ++PQ
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFARKVA-YLPQQ- 93
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHH-------VERARTVDALLKELGLLKCKNSVLNVL 132
L E MT+ + + R H V+ + +GL + +++ L
Sbjct: 94 -----LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148
Query: 133 SGGERKRVALAV 144
SGGER+R +A+
Sbjct: 149 SGGERQRAWIAM 160
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 40.7 bits (96), Expect = 2e-04
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 45/126 (35%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
+ G L ++G SG GK+TL I ++ G+IL G ++
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEGKDI------------------ 77
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGER 137
K+ + ER V LL+++GL L LSGG+R
Sbjct: 78 ---------------TKLSKE----ERRERVLELLEKVGL---PEEFLYRYPHELSGGQR 115
Query: 138 KRVALA 143
+R+ +A
Sbjct: 116 QRIGIA 121
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.0 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
PLF ++L+ + E+G LAI+G +G GKTTLL + ++ D
Sbjct: 333 PLF------KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD 372
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 2 ETFHPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDG 54
+ H +G KE++ GI E + A++GPSG+GK+T L +++ I V G
Sbjct: 24 KDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80
Query: 55 QILLNGLEVEKN 66
QIL G+++ +
Sbjct: 81 QILYRGIDINRK 92
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 40.7 bits (96), Expect = 2e-04
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG--LEVEKNLMVKVSGFVPQHD 79
G +A++GP+GAGK+TL + +++ +GQI + G L + G V Q
Sbjct: 25 RPGRFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALARLGVVFQQP 83
Query: 80 LTVDT-LTVHEHMTLMARLKMDRNLHHVERART---VDALLKELGLLKCKNSVLNVLSGG 135
T+D L+V +++ A LH + RA + LL LGL + + + L+GG
Sbjct: 84 -TLDLDLSVRQNLRYHA------ALHGLSRAEARARIAELLARLGLAERADDKVRELNGG 136
Query: 136 ERKRVALA 143
R+RV +A
Sbjct: 137 HRRRVEIA 144
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 41.1 bits (97), Expect = 2e-04
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 35/148 (23%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
E +S A+ G +AI+GP+GAGK+TL+ + QR+ G+IL++G ++
Sbjct: 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-QRVFDPQSGRILIDGTDIR---------- 400
Query: 75 VPQHDLTVDTL-----TVHEHMTLMARLKMDRNLH-------------HVERARTVDALL 116
+T +L V + L R D N+ ERA+ D +
Sbjct: 401 ----TVTRASLRRNIAVVFQDAGLFNRSIED-NIRVGRPDATDEEMRAAAERAQAHDFIE 455
Query: 117 -KELGLLKCKNSVLNVLSGGERKRVALA 143
K G LSGGER+R+A+A
Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIA 483
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 40.5 bits (95), Expect = 2e-04
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQI--LLNGLEVEKNLMVKVS- 72
G +L I+G SG+GKTTLL CIS R+ G V DGQ L E E+ +++
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 73 GFVPQH 78
GFV Q+
Sbjct: 92 GFVHQN 97
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 40.5 bits (95), Expect = 2e-04
Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE---VEKNLMVKVSGFVPQH 78
+ G ++ I+G SG+GK+TL I QR +G++L++G + + + + G V Q
Sbjct: 26 KPGEVVGIVGRSGSGKSTLTKLI-QRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQE 84
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSG 134
++ + ++ +++ L A M +E A+ A L + ++++ LSG
Sbjct: 85 NVLFNR-SIRDNIAL-ADPGMSME-RVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG 141
Query: 135 GERKRVALA 143
G+R+R+A+A
Sbjct: 142 GQRQRIAIA 150
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 40.0 bits (94), Expect = 3e-04
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 47/127 (37%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD---GQILLNGLEVE--KNLMVKVSGFVP 76
+ G +A++G SG+GK+TLL Q + GD+ G+I L+G+ V + + + +
Sbjct: 26 KQGEKIALLGRSGSGKSTLL----QLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
Q DT TL N++ SGGE
Sbjct: 82 QRPYLFDT-------TLR-------------------------------NNLGRRFSGGE 103
Query: 137 RKRVALA 143
R+R+ALA
Sbjct: 104 RQRLALA 110
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 39.9 bits (93), Expect = 4e-04
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLEV 63
FG + ++ ++ A+MGPSG+GK+TLL ++ I+ V G++ L+G ++
Sbjct: 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72
Query: 64 EKNLMVKVSGFVP---QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG 120
K ++++ V Q + L++ E++ L +L + R AL K
Sbjct: 73 FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 121 LLKCKNSV---LNVLSGGERKRVALA 143
+ K+ + LSGG+++R+ +A
Sbjct: 133 WDEVKDRLDAPAGKLSGGQQQRLCIA 158
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 39.8 bits (93), Expect = 4e-04
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVSGFVPQHDL 80
G ++++G SG GK+TLL IS Q G ++L G ++ + + MV V Q+
Sbjct: 11 GEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMV-----VFQNYS 64
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHV---ERARTVDALLKELGLLKCKNSVLNVLSGGER 137
+ LTV E++ L +DR L + ER V+ + +GL + + LSGG +
Sbjct: 65 LLPWLTVRENIA----LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 138 KRVALA 143
+RVA+A
Sbjct: 121 QRVAIA 126
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 39.7 bits (93), Expect = 5e-04
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 15 ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNL 67
++L G++ GS A++GP+GAGK+TLL ++ I G++ + G EV EK +
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWV 77
Query: 68 MVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
KV G V Q D V + TV + + + L E R V+ LK + + ++
Sbjct: 78 RSKV-GLVFQDPDDQVFSSTVWDDVAFGPV---NMGLDKDEVERRVEEALKAVRMWDFRD 133
Query: 127 SVLNVLSGGERKRVALA 143
LS G++KRVA+A
Sbjct: 134 KPPYHLSYGQKKRVAIA 150
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1
and is thought to have a role in resistance to
oxidative stress. Interestingly, subfamily B is more
closely related to the carboxyl-terminal component of
subfamily C than the two halves of ABCC molecules are
with one another.
Length = 238
Score = 39.4 bits (93), Expect = 6e-04
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
LS G +A++G SG GK+T+++ + +R G+ILL+G+++
Sbjct: 22 LSLTIPPGKTVALVGSSGCGKSTVVSLL-ERFYDPTSGEILLDGVDI 67
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 39.1 bits (92), Expect = 7e-04
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 11/66 (16%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQIL-LNGL-EVEKNLMVKVS- 72
G +L I+G SG+GKTTLL +S R+ G+V DGQ+ L L E E+ +++
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 73 GFVPQH 78
GFV QH
Sbjct: 92 GFVHQH 97
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 39.0 bits (91), Expect = 7e-04
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-------NLMVK 70
G ++AI+G SG+GK+TLL + G +D G ++ NG + K L +
Sbjct: 33 GEGEMMAIVGSSGSGKSTLL-----HLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87
Query: 71 VSGFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
GF+ Q H L D T E++ + + + RA +L +GL N
Sbjct: 88 KLGFIYQFHHLLPD-FTALENVAMPLLIGKKKPAEINSRALE---MLAAVGLEHRANHRP 143
Query: 130 NVLSGGERKRVALA 143
+ LSGGER+RVA+A
Sbjct: 144 SELSGGERQRVAIA 157
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.2 bits (91), Expect = 7e-04
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLE- 62
+GD ++++ + G++ A++GPSG GKTT L I++ V G+ILL+G +
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 63 ----VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV----ERARTVDA 114
V+ M + G V Q T++V +++ +L R+ H+ ER+ A
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 115 LLKELGLLKCKNSVLNVLSGGERKRVALA 143
L E+ + LSGG+++R+ +A
Sbjct: 134 LWDEVK--DRLKTPATGLSGGQQQRLCIA 160
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 39.1 bits (92), Expect = 7e-04
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 37/140 (26%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQHDL 80
G +AI+GPSG+GK+T+L + R G IL++G EV + + + G VPQ
Sbjct: 27 GKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ--- 82
Query: 81 TVDTLTVHEHMTLMARLK---MDRNLHHVERARTV--------------DALLKELGLLK 123
DT+ ++ T+ ++ D V A D ++ E GL
Sbjct: 83 --DTVLFND--TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK- 137
Query: 124 CKNSVLNVLSGGERKRVALA 143
LSGGE++RVA+A
Sbjct: 138 --------LSGGEKQRVAIA 149
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 38.9 bits (91), Expect = 7e-04
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
S+ ++GP+GAGK+TLL I+ ++ G+I+ +G + + K+
Sbjct: 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPWTRKDLHKIGSL------- 75
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
+++ ++E++T LK+ L + +R +D +L + L S G ++R+
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSR-IDEVLNIVDLTNTGKKKAKQFSLGMKQRLG 134
Query: 142 LAVQTI 147
+A+ +
Sbjct: 135 IAIALL 140
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 39.3 bits (92), Expect = 8e-04
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 60/164 (36%)
Query: 13 YKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKN 66
+ L+GI G +AI+G SGAGK+T+L + + + G I ++G +V +
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQQ 333
Query: 67 LMVKVSGFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV------------- 112
+ + G VPQ L DT+ ++++ R
Sbjct: 334 SLRRAIGIVPQDTVLFNDTI-----------------AYNIKYGRPDATAEEVGAAAEAA 376
Query: 113 -------------DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
D + E GL LSGGE++RVA+A
Sbjct: 377 QIHDFIQSLPEGYDTGVGERGLK---------LSGGEKQRVAIA 411
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 38.9 bits (91), Expect = 9e-04
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
++ I+GP+G GKTT + ++ ++ D +G I + + VS + PQ+
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEI--------ELDTVS-YKPQYIKADY 74
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
TV + ++ + + E + K L + + + + LSGGE +RVA+A
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTE-------IAKPLQIEQILDREVPELSGGELQRVAIA 127
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 38.8 bits (91), Expect = 9e-04
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 33/140 (23%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVE----KNLMVKVSGFVP 76
+G +A++GPSG+GK+TL+ I + DVD G+IL++G +V +L ++ G V
Sbjct: 26 PAGETVALVGPSGSGKSTLVNLIPRFY--DVDSGRILIDGHDVRDYTLASLRRQI-GLVS 82
Query: 77 QHDLTVDTL----TVHEHMTLMARLKMDRNLHHVERA-RTVDA--LLKEL--GLLKCKNS 127
Q D TV E++ VE A R +A + EL G ++
Sbjct: 83 Q-----DVFLFNDTVAENIAYGRP---GATREEVEEAARAANAHEFIMELPEGY----DT 130
Query: 128 VLNV----LSGGERKRVALA 143
V+ LSGG+R+R+A+A
Sbjct: 131 VIGERGVKLSGGQRQRIAIA 150
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 38.7 bits (90), Expect = 0.001
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---- 63
FG + L+ +G +A++GPSG+GK+T+L I ++ +GQI + G ++
Sbjct: 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILR-ILMTLEPIDEGQIQVEGEQLYHMP 68
Query: 64 ----------EKNL--MVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERA 109
EK+L M G V Q TV +++T + L M R
Sbjct: 69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARA---EAEK 125
Query: 110 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
R ++ LL +GL + + LSGG+++RVA+A
Sbjct: 126 RAME-LLDMVGLADKADHMPAQLSGGQQQRVAIA 158
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 38.4 bits (90), Expect = 0.001
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 31/134 (23%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82
+G L I GP+GAGKTTLL ++ ++ D G++ G +
Sbjct: 27 AGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQG-----------------EPIQN 68
Query: 83 DTLTVHEH-------------MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
+ H+ +T + L + H A T+ L ++GL ++ +
Sbjct: 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPV 128
Query: 130 NVLSGGERKRVALA 143
LS G+++RVALA
Sbjct: 129 GQLSAGQQRRVALA 142
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 39.0 bits (91), Expect = 0.001
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--EK 65
+GD LS SG ++GP+GAGK+T+ I D G+I + G+ V
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA-GKITVLGVPVPARA 109
Query: 66 NLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDRNLHHVERARTVDAL---LKELGL 121
L G VPQ D TV E++ + R M R ++A+ L E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM--------STREIEAVIPSLLEFAR 161
Query: 122 LKCK-NSVLNVLSGGERKRVALA 143
L+ K ++ ++ LSGG ++R+ LA
Sbjct: 162 LESKADARVSDLSGGMKRRLTLA 184
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 39.2 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
G ++ I+GP+G GKTT + ++ G I + E +KVS + PQ+
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLA--------GVIKPDEGSEED---LKVS-YKPQYISPDY 414
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
TV + + R + E ++K L L ++ LSGGE +RVA+A
Sbjct: 415 DGTVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERPVDELSGGELQRVAIA 467
Query: 144 V 144
Sbjct: 468 A 468
Score = 32.3 bits (74), Expect = 0.15
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 42/148 (28%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVD-------------GQILLNGLE- 62
G ++ I+GP+G GK+T L ++ ++ G + G L N +
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155
Query: 63 -VEKNLMVKVSGFVPQHDLTVDTL------TVHEHMTLMARLKMDRNLHHVERARTVDAL 115
E L PQ+ VD + V E + K+D ER + D +
Sbjct: 156 LYEGELRAVHK---PQY---VDLIPKVVKGKVGELLK-----KVD------ERGK-FDEV 197
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
++ LGL + ++ LSGGE +RVA+A
Sbjct: 198 VERLGLENVLDRDVSELSGGELQRVAIA 225
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.4 bits (89), Expect = 0.001
Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 39/191 (20%)
Query: 28 AIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEV-EKNLMV----KVSGFVPQH 78
A++GPSG GK+T L C+++ I ++G++LL+G + +K++ V K G V Q
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQK 93
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL----LKELGLL-----KCKNSVL 129
+++++++ R +H ++ + +D + LK+ L K S L
Sbjct: 94 PNPF-PMSIYDNVAYGPR------IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146
Query: 130 NVLSGGERKRVALAVQTIIVQSGFVPQHDLT-----VDTLTVHEHMTLMARLKMDRNL-- 182
LSGG+++R+ +A +TI V+ + + T + TL + + LM LK + +
Sbjct: 147 K-LSGGQQQRLCIA-RTIAVKPDVILMDEPTSALDPISTLKIED---LMVELKKEYTIVI 201
Query: 183 --HHVERARTV 191
H++++A V
Sbjct: 202 VTHNMQQASRV 212
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 39.0 bits (91), Expect = 0.001
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACI---------SQRIQGDVDGQILLNGLEVE--KNLMVK 70
E G + +MG SG+GK+TLL + S ++ D DG + + + + L
Sbjct: 48 EEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVK-DGDGSVDVANCDAATLRRLRTH 106
Query: 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
V Q + TV E++ ++ + ER + VD L+ +GL + +
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRKPG 163
Query: 131 VLSGGERKRVALA 143
LSGG ++RV LA
Sbjct: 164 ELSGGMQQRVGLA 176
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 38.4 bits (89), Expect = 0.001
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 4 FHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
H +G+ + +S A +G +++I+G SG+GK+T L CI+ ++ +G I++NG +
Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTI 69
Query: 64 ----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-----------HHVER 108
+K+ +KV+ L V +H L + + + N+ R
Sbjct: 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129
Query: 109 ARTVDALLKELGLLKCKNSVLNV-LSGGERKRVALA 143
R V L K +G+ + V LSGG+++RV++A
Sbjct: 130 ERAVKYLAK-VGIDERAQGKYPVHLSGGQQQRVSIA 164
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 38.3 bits (90), Expect = 0.001
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 34/145 (23%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75
LS + G L I+GP+GAGKTT++ I+ + + D +G +L G ++ +
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTG---------L 69
Query: 76 PQHDL------------TV-DTLTVHEHMTLMARLKMDRN--------LHHVERARTVDA 114
P+H + TV + LTV E++ L L D++ L E+ R ++
Sbjct: 70 PEHQIARAGIGRKFQKPTVFENLTVFENLELA--LPRDKSVFASLFFRLSAEEKDR-IEE 126
Query: 115 LLKELGLLKCKNSVLNVLSGGERKR 139
+L+ +GL + + +LS G+++
Sbjct: 127 VLETIGLADEADRLAGLLSHGQKQW 151
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 38.8 bits (91), Expect = 0.001
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 44/165 (26%)
Query: 14 KESLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK 70
KE L I+ S G+ + ++G +GAGK+TLL RI VD + NG E +K
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLL-----RIMAGVDKEF--NG-EARPAPGIK 69
Query: 71 VSGFVPQHDLTVDTLTVHEH-MTLMARLK--MDR----NLHHVERARTVDALLKELG--- 120
V G++PQ T TV E+ +A +K +DR + E +DALL E
Sbjct: 70 V-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 121 --------------------LLKC--KNSVLNVLSGGERKRVALA 143
L+C ++ + LSGGER+RVAL
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC 173
Score = 37.2 bits (87), Expect = 0.005
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL--------- 58
FGD + LS G ++ ++GP+GAGK+TL I+ + Q D G I +
Sbjct: 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYV 390
Query: 59 ----NGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERARTVD 113
+ L+ K + ++SG +D + + + + +R + R N ++ + V
Sbjct: 391 DQSRDALDPNKTVWEEISG-------GLDIIQLGKR-EVPSRAYVGRFNFKGSDQQKKVG 442
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFV-----PQHDLTVDTL 164
L SGGER RV LA + G V P +DL V+TL
Sbjct: 443 QL-----------------SGGERNRVHLA--KTLKSGGNVLLLDEPTNDLDVETL 479
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 38.5 bits (90), Expect = 0.001
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 16 SLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD-----VDGQILLNGLEVEKNLMVK 70
LS + G L ++GP+GAGKTTL+ I+ + + DG L L +
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
Query: 71 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-------HHVERARTVDALLKELGLLK 123
+ G Q + LTV E+ L L D+++ E R +D LL +GL
Sbjct: 83 I-GRKFQKPTVFENLTVREN--LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 124 CKNSVLNVLSGGERKRVALAVQTIIVQS 151
++ + +LS G+++ L + ++ Q
Sbjct: 140 ERDRLAALLSHGQKQW--LEIGMLLAQD 165
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein
PhnK. Members of this family are the PhnK protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and
the adjacent-encoded PhnL resemble transporter
ATP-binding proteins but are suggested, based on
mutatgenesis studies, to be part of this complex rather
than part of a transporter per se [Central intermediary
metabolism, Phosphorus compounds].
Length = 253
Score = 38.3 bits (89), Expect = 0.002
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRI---QGDV-----DGQI--LLNGLEVEKNLMVKVS- 72
G +L I+G SG+GK+TLL C++ R+ G G L E E+ +++
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 73 GFVPQH 78
GFV Q+
Sbjct: 89 GFVHQN 94
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNGL 61
+ G +L I GP+G+GK+TLL+ I QR DV +G I + +
Sbjct: 339 KPGQMLGICGPTGSGKSTLLSLI-QR-HFDVSEGDIRFHDI 377
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 37.9 bits (88), Expect = 0.002
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ---RIQG-DVDGQILLNGLEV 63
+GD + + +S S+ A++GPSG GK+T L C+++ RI+ +DG + L+G ++
Sbjct: 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 37.0 bits (87), Expect = 0.002
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
G + A++G +GAGK+TL+ +S + D G+IL++G EV
Sbjct: 24 RRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVS 65
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 38.2 bits (90), Expect = 0.002
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 61/156 (39%)
Query: 29 IMGPSGAGKTTLL---ACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL 85
++G +GAGK+TLL A + + +G+ G++V G++PQ
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA---RPAPGIKV---------GYLPQEPQLDPEK 85
Query: 86 TVHEH--------------------------------MTLMARL--KMD-RNLHHVERA- 109
TV E+ L +D + ++
Sbjct: 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQL 145
Query: 110 -RTVDALLKELGLLKC--KNSVLNVLSGGERKRVAL 142
+DAL +C ++ + LSGGER+RVAL
Sbjct: 146 EIAMDAL-------RCPPWDAKVTKLSGGERRRVAL 174
Score = 32.8 bits (76), Expect = 0.13
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 131 VLSGGERKRVALAVQTIIVQSGFV-----PQHDLTVDTL 164
VLSGGER R+ LA +T+ Q G V P +DL V+TL
Sbjct: 445 VLSGGERNRLHLA-KTLK-QGGNVLLLDEPTNDLDVETL 481
Score = 30.5 bits (70), Expect = 0.66
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
FGD + LS G ++ I+GP+GAGK+TL I+ + Q D
Sbjct: 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 38.2 bits (89), Expect = 0.002
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 15 ESLSGIA---ESGSLLAIMGPSGAGKTTL---LACISQRIQGD--VDGQIL--LNGLEVE 64
E L GI+ +G ++AI+G SG+GK+TL L C+ + G V GQ + L+ +
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ L + GF+ Q + LT +++ + A + RA+ LL+ LGL
Sbjct: 82 Q-LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ---ELLQRLGLEDR 137
Query: 125 KNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 184
+ LSGG+++RV++A ++ G V D L H +MA L R+ H
Sbjct: 138 VEYQPSQLSGGQQQRVSIA--RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVD 53
G L+ ++GPSGAGK TLL R+ GD
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPR 30
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 37.9 bits (88), Expect = 0.003
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 8 FGDTNYK------ESLSGIAESGSLLAIMGPSGAGKTTLLACI--SQRIQGDVDGQILLN 59
FG +L+ + G ++A++G SGAGKTTLL I +Q+ +G+ +
Sbjct: 387 FGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG 446
Query: 60 GLEVEKNLMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE 118
+EV KN VS +P +++ +T+ EH + D N +L
Sbjct: 447 KVEVPKN---TVSALIPGEYEPEFGEVTILEH---LRSKTGDLNA--------AVEILNR 492
Query: 119 LGLLKC--KNSVLNVLSGGERKRVALA 143
GL + LS G+++R LA
Sbjct: 493 AGLSDAVLYRRKFSELSTGQKERAKLA 519
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 37.3 bits (86), Expect = 0.003
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 38/233 (16%)
Query: 5 HPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-----GQI 56
H +G+ E+L GI+ E L A++GPSG GK+T L C++ R+ D++ G+I
Sbjct: 11 HLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEI 66
Query: 57 LLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMTLMARLK--MDRNL--HHVE 107
G + + M V G V Q T +V++++ ++ D+ L VE
Sbjct: 67 KFEGQNIYGSKMDLVELRKEVGMVFQQP-TPFPFSVYDNVAYGLKIAGVKDKELIDQRVE 125
Query: 108 RARTVDALLKELGLLKCKNSVLNVLSGGERKRV----ALAVQTIIVQSGFVPQHDLTVDT 163
+ A+ KE +N+ SGG+++R+ ALAV+ +V + + +D
Sbjct: 126 ESLKQAAIWKETKDNLDRNA--QAFSGGQQQRICIARALAVRPKVV---LLDEPTSALDP 180
Query: 164 LTVHEHMTLMARLKMD-------RNLHHVERARTVDALLKELGLLKCRPADEL 209
++ E + LK NL R A L L++ P +E+
Sbjct: 181 ISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 36.8 bits (86), Expect = 0.003
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDT 84
AI+G G+GK+TLL ++ + G +LL+G ++ + + G+VPQ D+T+
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFY 91
Query: 85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV------LSGGERK 138
T+ +++TL A L D + V + + L + LSGG+R+
Sbjct: 92 GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP----NGLDLQIGERGRGLSGGQRQ 147
Query: 139 RVALA 143
VALA
Sbjct: 148 AVALA 152
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 37.8 bits (88), Expect = 0.003
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 25/142 (17%)
Query: 11 TNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
+ +LS I GSL+AI+G +G GKT+L++ + + D +++ G
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------- 679
Query: 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
V+ +VPQ + TV +++ + +R ERA V AL +L LL +
Sbjct: 680 --TVA-YVPQVSWIFNA-TVRDNILFGSPFDPER----YERAIDVTALQHDLDLLPGGDL 731
Query: 128 V------LNVLSGGERKRVALA 143
+N+ SGG+++RV++A
Sbjct: 732 TEIGERGVNI-SGGQKQRVSMA 752
Score = 28.9 bits (65), Expect = 2.4
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLM--VKVSGFVPQ 77
+ I+G +GAGK+++L + RI G+IL++G ++ K LM KV G +PQ
Sbjct: 1268 VGIVGRTGAGKSSMLNALF-RIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVD-----GQILLNGLEV 63
A +GPSG GK+TLL C + R+ VD G+I L+G +
Sbjct: 55 AFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNI 94
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 37.6 bits (88), Expect = 0.003
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 26/138 (18%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN----------LMV---- 69
G +L I G GAG+T L+ C+ G +G+I ++G V+ MV
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
K G VP + V +++TL A L ++ A + +L+ + LK K +
Sbjct: 348 KRDGIVPV-------MGVGKNITL-AALDRFTGGSRIDDAAELKTILESIQRLKVKTASP 399
Query: 130 NV----LSGGERKRVALA 143
+ LSGG +++ LA
Sbjct: 400 ELAIARLSGGNQQKAVLA 417
Score = 26.8 bits (60), Expect = 9.1
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRI-QGDVDGQILLNGLEVE 64
+G ++++ G +GAGK+TL+ +S G +G+I+ G E++
Sbjct: 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 36.9 bits (85), Expect = 0.004
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQ--GDVDGQILLNGLEVEKNLMV---KVSGFVP 76
E + A++G SG GK+T L C ++ +DG + + G +V+ +V K G V
Sbjct: 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85
Query: 77 QHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLL-----KCKNSVLN 130
Q V +++E+++ +L M +N E A VD L+++GL K K + L
Sbjct: 86 QQP-NVFVKSIYENISYAPKLHGMIKNKDE-EEALVVDC-LQKVGLFEEVKDKLKQNAL- 141
Query: 131 VLSGGERKRVALA 143
LSGG+++R+ +A
Sbjct: 142 ALSGGQQQRLCIA 154
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 36.8 bits (85), Expect = 0.004
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 33/148 (22%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
P+FG ++ ++G L + G +GAGKTTLL ++ + + GQI ++G
Sbjct: 25 PVFGPLDFH------VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDG----- 72
Query: 66 NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD----RNLH-----HVERA-RTVDAL 115
+ D ++ + LK D NLH H RA + +
Sbjct: 73 -----------KTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSA 121
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L +GL +++++ LS G++KR+ALA
Sbjct: 122 LAIVGLAGYEDTLVRQLSAGQKKRLALA 149
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 37.4 bits (87), Expect = 0.004
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKVSGFVPQHDL 80
S I+G SG+GK+TL + Q G+ILLNG +++++ + + ++PQ
Sbjct: 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPY 558
Query: 81 TVDTLTVHEHMTLMAR--LKMDRNLHHVERARTVDALLK-ELGLLKCKNSVLNVLSGGER 137
++ E++ L A+ + D E A D + LG + + +SGG++
Sbjct: 559 IFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617
Query: 138 KRVALA 143
+R+ALA
Sbjct: 618 QRIALA 623
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 36.7 bits (85), Expect = 0.005
Identities = 52/206 (25%), Positives = 104/206 (50%), Gaps = 28/206 (13%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--------RIQGDV--DGQI 56
+G+ +S++ + + A++GPSG GK+TLL C+++ +I G + DG+
Sbjct: 12 FYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED 71
Query: 57 LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH----VERARTV 112
+ ++V +L +KV G V Q ++++E++ R + ++ VER+
Sbjct: 72 IYGNIDV-ADLRIKV-GMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG 128
Query: 113 DALLKELGLLKCK-NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT--VDTLTVHEH 169
AL E +K + S LSGG+++R+ +A +TI ++ + + T +D + H+
Sbjct: 129 AALWDE---VKDRLKSHAFGLSGGQQQRLCIA-RTIAMEPDVILMDEPTSALDPIATHKI 184
Query: 170 MTLMARLKMDRNL----HHVERARTV 191
LM LK + + H +++AR +
Sbjct: 185 EELMEELKKNYTIVIVTHSMQQARRI 210
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 36.5 bits (85), Expect = 0.005
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 4 FHPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
F + + E+L GI+ E G ++ +GP+GAGKTT L +S +Q G++ + G
Sbjct: 27 FKRKYRE---VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAG 82
Query: 61 L---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
L + K + ++ Q L V + L+A + +L + +D L +
Sbjct: 83 LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI---YDLPPARFKKRLDELSE 139
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
L L + ++ + LS G+R R +A
Sbjct: 140 LLDLEELLDTPVRQLSLGQRMRAEIA 165
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays
the role of a scaffold protein for assembly of
iron-sulfur clusters and delivery to target proteins;
SufS is a cysteine desulfurase which mobilizes the
sulfur atom from cysteine and provides it to the
cluster; SufE has no associated function yet.
Length = 200
Score = 36.4 bits (85), Expect = 0.005
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACI----SQRIQGDVDGQILLNG 60
KE L G+ + G + A+MGP+G+GK+TL I + +G+IL G
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKG 63
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 36.0 bits (84), Expect = 0.005
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49
G L+ + GPSG GK+TL+ + + +
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLEDDK 29
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 36.6 bits (85), Expect = 0.006
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 23/139 (16%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
FG +S + G +L ++GP+GAGK+TL+ + + D +G I + L
Sbjct: 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVI-----KRNGKL 67
Query: 68 MVKVSGFVPQHDLTVDT---LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
+ G+VPQ L +DT LTV+ + L K + L ++R + +
Sbjct: 68 RI---GYVPQK-LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI--------- 114
Query: 125 KNSVLNVLSGGERKRVALA 143
++ + LSGGE +RV LA
Sbjct: 115 -DAPMQKLSGGETQRVLLA 132
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 36.7 bits (86), Expect = 0.006
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV---KVSGF 74
+G + ++G SGAGK+TL+ CI+ ++ G++L++G ++ EK L ++ G
Sbjct: 29 PAGEIFGVIGASGAGKSTLIRCIN-LLERPTSGRVLVDGQDLTALSEKELRKARRQI-GM 86
Query: 75 VPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
+ QH + + TV +++ L L + E V LL+ +GL + LS
Sbjct: 87 IFQHFNLLSSRTVFDNVALPLELAGTPKA----EIKARVTELLELVGLSDKADRYPAQLS 142
Query: 134 GGERKRVALA 143
GG+++RVA+A
Sbjct: 143 GGQKQRVAIA 152
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 36.7 bits (86), Expect = 0.006
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 30/138 (21%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEV----EKNLMVKVSGFVP 76
++G +A++G +G GK+TLL +++ D G+ILLNG + E L +S V
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTR--AWDPQQGEILLNGQPIADYSEAALRQAIS-VVS 420
Query: 77 QH-DLTVDTLTVHEHMTLMARLKMDRNLHHV----------ERARTVDALLKELGLLKCK 125
Q L TL +++ L A D L V E + ++A L E G
Sbjct: 421 QRVHLFSATL--RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ--- 475
Query: 126 NSVLNVLSGGERKRVALA 143
LSGGE++R+ +A
Sbjct: 476 ------LSGGEQRRLGIA 487
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 36.6 bits (85), Expect = 0.006
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE 64
S+ A+MG +GAGK+TLL C+ Q D G IL G E++
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEID 63
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 36.3 bits (84), Expect = 0.007
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
+GD + LS + G ++GP+GAGKTT L + D G I L G V
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA-GSISLCGEPVPSRA 75
Query: 68 MVKVS--GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
G VPQ D TV E++ + R L V LL+ L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRY---FGLSAAAARALVPPLLEFAKLENKA 132
Query: 126 NSVLNVLSGGERKRVALA 143
++ + LSGG ++R+ LA
Sbjct: 133 DAKVGELSGGMKRRLTLA 150
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 36.1 bits (84), Expect = 0.007
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG---LEVEKNLMVKVSGFV-PQ 77
G + AIMGP+G+GK+TL I+ +V G IL G LE+E + + F+ Q
Sbjct: 25 KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQ 84
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV------ 131
+ + ++ E L+ N R LL L LLK K ++L +
Sbjct: 85 YPEEIPGVSNLEF------LRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN 138
Query: 132 ------LSGGERKR 139
SGGE+KR
Sbjct: 139 RSVNEGFSGGEKKR 152
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 36.1 bits (83), Expect = 0.007
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEV--- 63
E+L GI + A++GPSG GK+T L +++ I G + G + L G +
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77
Query: 64 -EKNLMV-KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 121
E + + K G V Q +++E++ RL ++ ++ A V+ LK+ +
Sbjct: 78 NEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEA--VETSLKQAAI 134
Query: 122 L-----KCKNSVLNVLSGGERKRVALA 143
S L+ LSGG+++RV +A
Sbjct: 135 WDEVKDHLHESALS-LSGGQQQRVCIA 160
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 36.0 bits (84), Expect = 0.008
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 29/136 (21%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-------G 73
G + ++G +GAGK+TLL ++ D G + + G +VS G
Sbjct: 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRG---------RVSSLLGLGGG 94
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
F P+ LT E++ L RL + R + ++ ELG + +
Sbjct: 95 FNPE-------LTGRENIYLNGRLLGLSRKEIDEKIDEIIE--FSELG--DFIDLPVKTY 143
Query: 133 SGGERKRVALAVQTII 148
S G + R+A A+ T +
Sbjct: 144 SSGMKARLAFAIATAL 159
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 36.4 bits (85), Expect = 0.008
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL--------EVEKNLMVKVSG 73
G +AI+G G+GK+TLL + + +G +LL+G+ ++ +N+ G
Sbjct: 489 RPGEKVAIIGRIGSGKSTLLKLLL-GLYQPTEGSVLLDGVDIRQIDPADLRRNI-----G 542
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK-----------ELGLL 122
+VPQ D + T+ +++ L A D + V ++ E G
Sbjct: 543 YVPQ-DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601
Query: 123 KCKNSVLNVLSGGERKRVALA 143
LSGG+R+ VALA
Sbjct: 602 ---------LSGGQRQAVALA 613
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 36.0 bits (83), Expect = 0.008
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLEVEKNLMVKVS-----GFVP 76
+ A+MGPSG GK+TLL ++ ++ V+G++ L G + + + G V
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVF 91
Query: 77 QHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERARTVDALLKELGLLKCKNSVLN----V 131
Q+ LT+++++ + +L + ++ ++ V+ LK+ L LN
Sbjct: 92 QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD--ERVEWALKKAALWDEVKDRLNDYPSN 149
Query: 132 LSGGERKRVALA 143
LSGG+R+R+ +A
Sbjct: 150 LSGGQRQRLVIA 161
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.8 bits (82), Expect = 0.008
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQR---IQGD-VDGQILLNGLE- 62
+GD + + +S E S++A +GPSG GK+T L ++ I ++G+I ++G
Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72
Query: 63 ----VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE 118
V+ + + K G V Q ++ E++ R+ ++ + + V+ LK
Sbjct: 73 YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIR--QRVEETLKG 129
Query: 119 LGLL-----KCKNSVLNVLSGGERKRVALA 143
L K K S LSGG+++R+ +A
Sbjct: 130 AALWDEVKDKLKESAF-ALSGGQQQRLCIA 158
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 35.3 bits (82), Expect = 0.010
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQ-GDVD-GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT 84
+ I+GP GAGK+TL +++++ +D G IL + L ++ ++ + +L D
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE 62
Query: 85 LT 86
+
Sbjct: 63 IV 64
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 35.6 bits (82), Expect = 0.010
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 23/144 (15%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------E 64
+++L G+ G + + G SGAGK+TLL I I+ G+I +G ++ E
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG-IERPSAGKIWFSGHDITRLKNRE 73
Query: 65 KNLMVKVSGFVPQ-HDLTVDTLTVHEHMTL---MARLKMDRNLHHVERARTVDALLKELG 120
+ + G + Q H L +D TV++++ + +A D + R V A L ++G
Sbjct: 74 VPFLRRQIGMIFQDHHLLMDR-TVYDNVAIPLIIAGASGD------DIRRRVSAALDKVG 126
Query: 121 LL-KCKNSVLNVLSGGERKRVALA 143
LL K KN + LSGGE++RV +A
Sbjct: 127 LLDKAKNFPIQ-LSGGEQQRVGIA 149
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 35.6 bits (82), Expect = 0.010
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE---KNLMVKV 71
+ +S G LAI+G +G+GK+TL ++ I+ G+IL+N + + K
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLHFGDYSFRSKR 88
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLN 130
+ Q T + L L+++ +L +R + + L+ +GLL N +
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH 148
Query: 131 VLSGGERKRVALAVQTII 148
+L+ G+++RVALA I+
Sbjct: 149 MLAPGQKQRVALARALIL 166
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 35.8 bits (83), Expect = 0.011
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 28/135 (20%)
Query: 28 AIMGPSGAGKTTLLACIS--------QRIQGDV--DGQ-ILLNGLEVEKNLMVKVSGFVP 76
A +GPSG GK+TLL + QR +G++ DG+ IL ++ L+ G V
Sbjct: 43 AFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI--ALLRAKVGMVF 100
Query: 77 QHDLTVDTLTVHEHMTLMARL-------KMDRNLHHVERARTVDALLKELGLLKCK-NSV 128
Q T +++++++ RL +MD VE A T AL E +K K +
Sbjct: 101 QKP-TPFPMSIYDNIAFGVRLFEKLSRAEMD---ERVEWALTKAALWNE---VKDKLHQS 153
Query: 129 LNVLSGGERKRVALA 143
LSGG+++R+ +A
Sbjct: 154 GYSLSGGQQQRLCIA 168
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 35.1 bits (82), Expect = 0.011
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 24 GSLLAIMGPSGAGKTTLLACI 44
G L+AI+GP G+GK++LL+ +
Sbjct: 31 GELVAIVGPVGSGKSSLLSAL 51
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 35.0 bits (81), Expect = 0.014
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVD 53
G L+A++GPSGAGK TLL R+ G
Sbjct: 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPR 34
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 35.2 bits (81), Expect = 0.014
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--------RIQGDV 52
+GD + +S + A++GPSG GK+T L CI++ R++G++
Sbjct: 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 35.3 bits (81), Expect = 0.015
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV------DG 54
+E + F D + ++++ S+ A++GPSG GK+T + +++ D+ +G
Sbjct: 6 VENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR--MNDLIPGFRHEG 63
Query: 55 QILLNGLEVEKNLM 68
I L+G+++ +
Sbjct: 64 HIYLDGVDIYDPAV 77
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 35.6 bits (82), Expect = 0.015
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 26/138 (18%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----------KNLMV---- 69
G +L + G GAG+T L+ + G +G + +NG V+ MV
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS-- 127
K G VP L V +++TL + LK ++ A + + + LK K +
Sbjct: 346 KRHGIVPI-------LGVGKNITL-SVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397
Query: 128 --VLNVLSGGERKRVALA 143
+ LSGG +++ LA
Sbjct: 398 FLPIGRLSGGNQQKAVLA 415
Score = 29.8 bits (67), Expect = 1.1
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ-RIQGDVDGQILLNGLEVEKN 66
FG + + G + + G +GAGK+TL+ +S G DG+I +G ++ +
Sbjct: 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS 70
Query: 67 LM--VKVSGFVPQH-DLT-VDTLTVHEHMTLMARLKMDRNL-HHVERARTVDALLKELGL 121
+ + +G V H +LT V L+V E++ L + + + LL+EL L
Sbjct: 71 NIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
Query: 122 LKCKNS-VLNVLSGGERKRVALA 143
+ + GG+++ V +A
Sbjct: 131 DADNVTRPVGDYGGGQQQLVEIA 153
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 35.5 bits (82), Expect = 0.016
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQHDL 80
G + I+GPSG+GK+TL + QR+ GQ+L++G+++ + + + G V Q ++
Sbjct: 483 GEFIGIVGPSGSGKSTLTKLL-QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGE 136
++ +++ L H + A+ A L + N+ + LSGG+
Sbjct: 542 LFSR-SIRDNIAL-CNPGAPFE-HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598
Query: 137 RKRVALA 143
R+R+A+A
Sbjct: 599 RQRIAIA 605
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.1 bits (81), Expect = 0.016
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 14 KESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQR---IQGD-VDGQILLNGLEV 63
++L I+ E + A++GPSG GK+T L C+++ I G V+G+ILL+G +
Sbjct: 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 34.7 bits (80), Expect = 0.018
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACI 44
+G +A+ GPSGAGK+TLL +
Sbjct: 31 VNAGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 35.3 bits (82), Expect = 0.018
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
L I +G + A+MG +GAGK+TLL +S Q D G IL++G E+
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA-GSILIDGQEM 68
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 35.0 bits (81), Expect = 0.020
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS--QRI-QGDVD-GQILLNGLEVEKNLMVKVSGFVPQ 77
G + +GPSG GK+TLL I+ + I GD+ G+ +N + + + G V Q
Sbjct: 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQ 82
Query: 78 HDLTVDTLTVHEHMTLMARL------KMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
L+V E+M+ +L ++++ ++ V + LL K K
Sbjct: 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR----KPKA----- 133
Query: 132 LSGGERKRVAL 142
LSGG+R+RVA+
Sbjct: 134 LSGGQRQRVAI 144
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 253
Score = 34.8 bits (80), Expect = 0.020
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 12 NYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNG 60
K +L I + A++GPSG GK+TLL C ++ I G + G IL NG
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 35.0 bits (80), Expect = 0.021
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQR 47
E G ++A++GP+GAGKTT +A ++QR
Sbjct: 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 34.5 bits (80), Expect = 0.021
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
G + I+G +GAGK+TLL I+ + G++ + G
Sbjct: 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTG 88
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 34.0 bits (79), Expect = 0.021
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 5 HPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
L D + G + ++G +GAGK+TLL I+ +
Sbjct: 13 KLLLKDISL------TINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
Score = 27.8 bits (63), Expect = 2.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 132 LSGGERKRVALA 143
LSGGE+ R+ALA
Sbjct: 71 LSGGEKMRLALA 82
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 34.7 bits (80), Expect = 0.022
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEVEK-----NLMVKVS 72
E + A++GPSG GK+T L +++ I ++G++LL+G ++ K N + K
Sbjct: 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86
Query: 73 GFVPQHDLTVDTLTVHEHMTLMAR---LKMDRNLHH-VERARTVDALLKELGLLKCKNSV 128
G V Q +++++++ R +K + L VE++ AL E+ + K S
Sbjct: 87 GMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-DRLKKSA 144
Query: 129 LNVLSGGERKRV----ALAVQ 145
L LSGG+++R+ ALAV+
Sbjct: 145 LG-LSGGQQQRLCIARALAVE 164
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 34.6 bits (80), Expect = 0.024
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 37/146 (25%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE--KNLMVKVSGFVP--QH- 78
+++++GP+GAGKTT+ C++ + G ILL G +E + G V QH
Sbjct: 31 QEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHV 89
Query: 79 ----DLTV-DTLTVHEHMTLMARL----------------KMDRNLHHVERARTVDALLK 117
++TV + L V +H L L +DR +ER
Sbjct: 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER--------- 140
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
+GLL+ N L+ G+++R+ +A
Sbjct: 141 -VGLLEHANRQAGNLAYGQQRRLEIA 165
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 34.4 bits (79), Expect = 0.025
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 19/131 (14%)
Query: 28 AIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEVEKN------LMVKVSGFV-- 75
A +GPSG GK+T L C ++ + V G++ ++G++V L KV G V
Sbjct: 35 AFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKV-GMVFQ 93
Query: 76 ---PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
P D + + +A+ K + VE++ T L +ELG + K+S L
Sbjct: 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-EIVEKSLTSVGLWEELG-DRLKDSAFE-L 150
Query: 133 SGGERKRVALA 143
SGG+++R+ +A
Sbjct: 151 SGGQQQRLCIA 161
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 34.4 bits (79), Expect = 0.028
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG---LEVEKN 66
K L G+ G + AIMGP+G+GK+TL A ++ R +V G + G LE+
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73
Query: 67 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE---RARTVDALLKELGLLK 123
G V+ V L L R+ E R D + +++ LLK
Sbjct: 74 DRAG-EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 124 CKNSVL----NV-LSGGERKR 139
+L NV SGGE+KR
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKR 153
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 34.8 bits (80), Expect = 0.029
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 23 SGSLLAIMGPSGAGKTTLLACI 44
S L AI GP+GAGKTTLL I
Sbjct: 29 SNGLFAITGPTGAGKTTLLDAI 50
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 34.6 bits (80), Expect = 0.029
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF----VPQH 78
+G + A++G +GAGK+TL+ I+ + D G + + G + K VPQ
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAHQLGIYLVPQE 94
Query: 79 DLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELG 120
L L+V E++ + + + + LL LG
Sbjct: 95 PLLFPNLSVKENILFGLPK--------RQASMQKMKQLLAALG 129
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 33.3 bits (77), Expect = 0.030
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 26 LLAIMGPSGAGKTTLL 41
L+ + GPSG GK+TLL
Sbjct: 1 LIVLSGPSGVGKSTLL 16
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 33.9 bits (78), Expect = 0.031
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----KNLMVKVSGFVPQHDLTVDT 84
I GPSG GK+TLL ++ I G +L G ++ + +VS L D
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD- 95
Query: 85 LTVHEHMTLMARLKMDRNLHHVERARTVDALLK-ELGLLKCKNSVLNVLSGGERKRVAL 142
TV++++ +++ + A +D L + L ++ LSGGE++R++L
Sbjct: 96 -TVYDNLIFPWQIRNQ----QPDPAIFLDDLERFALPDTILTKNI-AELSGGEKQRISL 148
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 34.7 bits (80), Expect = 0.031
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
G ++A++GPSG+GK+T+ A + Q + GQ+LL+G+ + +
Sbjct: 505 HPGEVVALVGPSGSGKSTVAALL-QNLYQPTGGQVLLDGVPLVQ 547
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 34.3 bits (79), Expect = 0.031
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHD---- 79
G ++ +G +GAGK+T L +L GL + + V+V+G P
Sbjct: 50 GEIVGFLGANGAGKSTTLK--------------MLTGLLLPTSGKVRVNGKDPFRRREEY 95
Query: 80 -------LTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
+ + L + LK+ + E A +D L + L L +
Sbjct: 96 LRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVR 155
Query: 131 VLSGGERKRVALA 143
LS G+R R LA
Sbjct: 156 KLSLGQRMRAELA 168
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 34.0 bits (78), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
G L+ +MGPSG+GK +LLA + QR
Sbjct: 2 GKLIWLMGPSGSGKDSLLAALRQR 25
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 34.9 bits (80), Expect = 0.032
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 16 SLSGIAES---GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS 72
+L+GI S G+L+A++G G GK++LL+ + + V+G + + G
Sbjct: 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKG----------SV 701
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV---- 128
+VPQ + ++ E++ L +E ALL +L +L +
Sbjct: 702 AYVPQQAW-IQNDSLRENILFGKALNEKYYQQVLEAC----ALLPDLEILPSGDRTEIGE 756
Query: 129 --LNVLSGGERKRVALA 143
+N LSGG+++RV+LA
Sbjct: 757 KGVN-LSGGQKQRVSLA 772
Score = 33.4 bits (76), Expect = 0.076
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVPQ 77
G + I+G +GAGK++L + RI +G+I+++GL + K +L K++ +PQ
Sbjct: 1310 HGGEKVGIVGRTGAGKSSLTLGLF-RINESAEGEIIIDGLNIAKIGLHDLRFKIT-IIPQ 1367
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 33.8 bits (78), Expect = 0.034
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
L E+ + I G +G+GKTTLL + I
Sbjct: 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49
>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2;
Reviewed.
Length = 337
Score = 34.2 bits (79), Expect = 0.038
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 15 ESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
E LS +S +L L + GP G+GKT + +++ + GD
Sbjct: 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 34.4 bits (80), Expect = 0.038
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 22 ESGSLLAIMGPSGAGKTTLL 41
+G +A++GPSGAGKT+LL
Sbjct: 374 PAGQRIALVGPSGAGKTSLL 393
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 33.9 bits (77), Expect = 0.038
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 34/196 (17%)
Query: 28 AIMGPSGAGKTTLLACISQ--------RIQGDVD--GQILLNGLEVEKNLMVKVSGFVPQ 77
AI+GPSG GK+T L C+++ R++G V+ Q + L +VS P+
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-----KCKNSVLNVL 132
+L ++V++++ ++ R +E V++ LK+ L K S L+ L
Sbjct: 97 PNLF--PMSVYDNVAYGVKIVGWRP--KLEIDDIVESALKDADLWDEIKHKIHKSALD-L 151
Query: 133 SGGERKRV----ALAVQTIIVQ-----SGFVPQHDLTVDTLTVHEHMTLMARLKM---DR 180
SGG+++R+ ALAV+ ++ G P + V++L + + L + L M
Sbjct: 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI--QSLRLRSELTMVIVSH 209
Query: 181 NLHHVERARTVDALLK 196
NLH V R A K
Sbjct: 210 NLHQVSRLSDFTAFFK 225
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 34.2 bits (79), Expect = 0.041
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMVKVSGFVPQHDL 80
G L I+GPSG+GK+TL + I G + L+G ++ ++ + + G++PQ D+
Sbjct: 362 GEALGIIGPSGSGKSTLARLLVG-IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DV 419
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGE 136
+ T+ E++ + +E AR L L + ++ + LSGG+
Sbjct: 420 ELFDGTIAENIARFGEEADPEKV--IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477
Query: 137 RKRVALA 143
R+R+ALA
Sbjct: 478 RQRIALA 484
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into
the lumen of the endoplasmic reticulum (ER), where
these peptides are loaded on major histocompatibility
complex (MHC) I molecules. Loaded MHC I leave the ER
and display their antigenic cargo on the cell surface
to cytotoxic T cells. Subsequently, virus-infected or
malignantly transformed cells can be eliminated. TAP
belongs to the large family of ATP-binding cassette
(ABC) transporters, which translocate a vast variety of
solutes across membranes.
Length = 226
Score = 33.6 bits (77), Expect = 0.049
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
DT + +S G + A++GPSG+GK+T++A + + GQ+LL+G
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVA-LLENFYQPQGGQVLLDG 75
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 33.3 bits (76), Expect = 0.050
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 28 AIMGPSGAGKTTLLACI 44
I GP+G+GKTT+L I
Sbjct: 23 LIYGPNGSGKTTILDAI 39
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The
CFTR subfamily domain 1. The cystic fibrosis
transmembrane regulator (CFTR), the product of the gene
mutated in patients with cystic fibrosis, has adapted
the ABC transporter structural motif to form a tightly
regulated anion channel at the apical surface of many
epithelia. Use of the term assembly of a functional ion
channel implies the coming together of subunits, or at
least smaller not-yet functional components of the
active whole. In fact, on the basis of current
knowledge only the CFTR polypeptide itself is required
to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2.
Length = 282
Score = 33.7 bits (77), Expect = 0.050
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
P+ + N K E G +LAI G +G+GKT+LL I
Sbjct: 51 PVLKNINLK------IEKGEMLAITGSTGSGKTSLLMLI 83
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 33.7 bits (77), Expect = 0.052
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 40/146 (27%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH-- 78
G L ++GPSGAGK++LL +LN LE+ ++ + ++G H
Sbjct: 25 CPEGETLVLLGPSGAGKSSLLR--------------VLNLLEMPRSGTLNIAG---NHFD 67
Query: 79 -----------DLTVDTLTVHEHMTLMARLKMDRNLHHV---------ERART-VDALLK 117
DL + V + L L + NL ++A + LLK
Sbjct: 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLK 127
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
L L + LSGG+++RVA+A
Sbjct: 128 RLRLKPYADRYPLHLSGGQQQRVAIA 153
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 33.6 bits (77), Expect = 0.052
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 35/144 (24%)
Query: 28 AIMGPSGAGKTTLLACISQ--------RIQGDV--------DGQILLNGLEVEKNL-MV- 69
A +GPSG GK+T+L C ++ R++G V + + +EV + + MV
Sbjct: 40 AFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV--DPVEVRRRIGMVF 97
Query: 70 -KVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHH-VERARTVDALLKELGLLKCKN 126
K + F P+ ++++++ AR+ ++ VER+ AL E+ K K
Sbjct: 98 QKPNPF-PK--------SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-DKLKQ 147
Query: 127 SVLNVLSGGERKRVALAVQTIIVQ 150
S L+ LSGG+++R+ +A + I VQ
Sbjct: 148 SGLS-LSGGQQQRLCIA-RAIAVQ 169
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 34.0 bits (78), Expect = 0.053
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 35/144 (24%)
Query: 24 GSLLAIMGPSGAGKTTLLACI--SQRIQGDVDGQILLNGLEVE--------KNLMVKVS- 72
G +L G G+G+T L+ C+ + G G+I LNG ++ K M ++
Sbjct: 289 GEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 73 -----GFVPQHDLTVDTLTVHEHMTLMARLKMDRN------LHHVERARTVDALLKELGL 121
GF P + ++M + LK H V+ RT + +EL
Sbjct: 346 SRRDNGFFPNFS-------IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELLA 397
Query: 122 LKCK--NSVLNVLSGGERKRVALA 143
LKC N + LSGG +++V ++
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLIS 421
Score = 29.4 bits (66), Expect = 1.5
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS-----GFVPQ 77
G + A++G +GAGK+TL+ +S I G I +N + K L K++ G + Q
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNK-LDHKLAAQLGIGIIYQ 87
Query: 78 HDLTVDTLTVHEHM 91
+D LTV E++
Sbjct: 88 ELSVIDELTVLENL 101
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 33.4 bits (77), Expect = 0.054
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 46/149 (30%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
G L ++GPSGAGK++LL R+ LN LE+ ++ + ++G D
Sbjct: 25 CPQGETLVLLGPSGAGKSSLL-----RV---------LNLLEMPRSGTLNIAGN--HFDF 68
Query: 81 --TVDTLTVHE----------------HMTLMARL--------KMDRNLHHVERARTVDA 114
T + E H+T+ L + ++ RA +
Sbjct: 69 SKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-ARA---EK 124
Query: 115 LLKELGLLKCKNSVLNVLSGGERKRVALA 143
LL+ L L + LSGG+++RVA+A
Sbjct: 125 LLERLRLKPYADRFPLHLSGGQQQRVAIA 153
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a
wide variety of presumed DNA repair proteins.
Length = 154
Score = 32.6 bits (75), Expect = 0.059
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
+ G+ G L + G G GK+TL ++ +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 33.2 bits (76), Expect = 0.064
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 12 NYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
N K++L+ ++ + A++GPSG+GK+TLL I++ D++ ++ + G
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR--MNDLNPEVTITG 65
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 33.5 bits (76), Expect = 0.064
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--------RIQGDVD--GQIL 57
+ + E +S + AI+GPSG GK+T + +++ +++G VD GQ +
Sbjct: 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76
Query: 58 LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLK 117
+ + N + + G V Q ++++E++ R+ L + V++ LK
Sbjct: 77 YDP-RININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISA--KLPQADLDEIVESALK 132
Query: 118 ELGLL-----KCKNSVLNVLSGGERKRVALA 143
L K S L LSGG+++R+ +A
Sbjct: 133 GAALWQEVKDKLNKSALG-LSGGQQQRLCIA 162
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.0 bits (75), Expect = 0.070
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82
+G LL + G +GAGKTTLL I+ + + G+IL ++K+L + Q
Sbjct: 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDL----CTYQKQLCFVG 80
Query: 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 142
++ ++TL D +H A + L + L + +LS G++++VAL
Sbjct: 81 HRSGINPYLTLRENCLYD--IHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVAL 138
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 33.2 bits (76), Expect = 0.071
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 37/151 (24%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGL----------EVEKNL 67
G + A++GPSG GK+T+L +++ I+G + G++L +G EV + +
Sbjct: 37 PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI 96
Query: 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-----MDRNLHHVERARTVDALLKELGLL 122
G V Q +++E++ AR+ MD VER+ A+ E
Sbjct: 97 -----GMVFQQPNPFPK-SIYENIAFGARINGYTGDMDE---LVERSLRKAAVWDE---- 143
Query: 123 KCK---NSVLNVLSGGERKRVALAVQTIIVQ 150
CK N LSGG+++R+ +A +TI ++
Sbjct: 144 -CKDKLNESGYSLSGGQQQRLCIA-RTIAIE 172
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 33.4 bits (76), Expect = 0.081
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 22/126 (17%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
GSL+AI+G +G GKT+L++ + + +++ G +VPQ +
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----------SVAYVPQVSWIFN 692
Query: 84 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV------LNVLSGGER 137
TV E++ + + +R RA V AL +L LL ++ +N+ SGG++
Sbjct: 693 A-TVRENILFGSDFESER----YWRAIDVTALQHDLDLLPGRDLTEIGERGVNI-SGGQK 746
Query: 138 KRVALA 143
+RV++A
Sbjct: 747 QRVSMA 752
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 32.2 bits (74), Expect = 0.082
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 30 MGPSGAGKTTLLACISQRIQG 50
+G SG GKTTL +Q + G
Sbjct: 7 IGRSGCGKTTL----TQALNG 23
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 33.4 bits (77), Expect = 0.086
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLL 41
+ +S E G +AI+GPSG+GK+TLL
Sbjct: 470 DDVSLQIEPGEFVAIVGPSGSGKSTLL 496
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 32.7 bits (75), Expect = 0.097
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 12 NYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG 60
N E L G+ G + AIMGP+G+GK+TL I+ + +G IL G
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 32.7 bits (75), Expect = 0.098
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 26/141 (18%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVD-------------GQILLNGLEV 63
+ G +L ++GP+G GK+T L ++ +++ G D G L N
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 64 EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
VKV PQ+ VD + + K+ L + +D L+ +L L
Sbjct: 82 LLEGDVKVI-VKPQY---VD------LIPKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 124 CKNSVLNVLSGGERKRVALAV 144
+ ++ LSGGE +RVA+A
Sbjct: 132 VLDRNIDQLSGGELQRVAIAA 152
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 32.1 bits (74), Expect = 0.098
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 9 GDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45
G K+ I LL I GPSG GK++L ++
Sbjct: 13 GRVLLKDLSFEIKPGDRLL-ITGPSGTGKSSLFRALA 48
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 32.4 bits (75), Expect = 0.11
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDV 52
+ I G SG GKT LL I++ + DV
Sbjct: 18 IGIFGGSGTGKTVLLGMIARNAKADV 43
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS 45
G L I G SGAGKT+LL ++
Sbjct: 417 RPGERLLITGESGAGKTSLLRALA 440
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 32.5 bits (74), Expect = 0.12
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG------DVDGQILLN 59
P D ++ GS A++G +G+GK+T IS+ I G + + +I ++
Sbjct: 21 PALNDISFS------IPRGSWTALIGHNGSGKST----ISKLINGLLLPDDNPNSKITVD 70
Query: 60 GLEVEKNLMVKVS---GFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 115
G+ + + + G V Q+ D TV + + +R + E + V +
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE---NRAVPRPEMIKIVRDV 127
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L ++G+L +S LSGG+++RVA+A
Sbjct: 128 LADVGMLDYIDSEPANLSGGQKQRVAIA 155
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 32.0 bits (74), Expect = 0.13
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 20 IAESGSLLAIMGPSGAGKTTL 40
+ G L+ + GPSGAGK+TL
Sbjct: 1 MMRRGLLIVLSGPSGAGKSTL 21
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 32.6 bits (75), Expect = 0.14
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 31/139 (22%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGL---EVEKNLMVKVSGFV 75
+ G +A++G SG+GK+T I++ + G G+IL +G+ E+ + ++ V
Sbjct: 503 QPGQRVALVGGSGSGKST----IAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMV 558
Query: 76 PQHDLTVDTLTVHEHMTL---------MARLKMDRNLHHVERART--VDALLKELGLLKC 124
Q D+ + TV +++TL + R D +H V +R DA L E G
Sbjct: 559 DQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG---- 613
Query: 125 KNSVLNVLSGGERKRVALA 143
N LSGG+R+R+ +A
Sbjct: 614 AN-----LSGGQRQRLEIA 627
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 32.2 bits (73), Expect = 0.14
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVPQ 77
G ++ ++G +GAGKTTLL + + G+I+ +G ++ +M + VP+
Sbjct: 29 NQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVPE 87
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
+TV E++ M +R+ ER + V L L + + + +SGGE+
Sbjct: 88 GRRVFSRMTVEENLA-MGGFFAERDQFQ-ERIKWVYELFPRLHERRIQRA--GTMSGGEQ 143
Query: 138 KRVAL 142
+ +A+
Sbjct: 144 QMLAI 148
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 32.0 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 28 AIMGPSGAGKTTLLACISQ---RIQG-DVDGQILLNGLEV 63
A +GPSG GK+T L C+++ I G V G+I L+G ++
Sbjct: 49 AFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 258
Score = 32.3 bits (73), Expect = 0.15
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ--------RIQGDV 52
+E + +G+ +++S S+ A++GPSG GK+T + C+++ RI+G V
Sbjct: 15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV 74
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 32.2 bits (74), Expect = 0.16
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
AI G SGAGKT+L+ IS + G+I+LNG
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQK-GRIVLNG 59
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 32.0 bits (73), Expect = 0.18
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS---GFVPQHDL 80
G +I+G +G+GK+T+ A + I+ G+I N + + K+ G V Q+
Sbjct: 35 GQWTSIVGHNGSGKSTI-AKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP- 92
Query: 81 TVDTLTVHEHMTLMARLKMD-------RNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
++ + + +K D + + E R V LK++ +L+ + N LS
Sbjct: 93 --------DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALS 144
Query: 134 GGERKRVALA 143
GG+++RVA+A
Sbjct: 145 GGQKQRVAIA 154
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 31.9 bits (73), Expect = 0.19
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 7 LFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
LF ++L G++ E G LA++G SG GK+T LA + I+ G++ G ++
Sbjct: 21 LFKPERLVKALDGVSFTLERGKTLAVVGESGCGKST-LARLLTMIETPTGGELYYQGQDL 79
Query: 64 -------EKNLMVKV--------SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 108
+K L K+ P+ V L L ++ +L ER
Sbjct: 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRK--KVGQ-------ILEEPLLINTSLSAAER 130
Query: 109 ARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALA 143
A++ ++GL + + ++ SGG+R+R+A+A
Sbjct: 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 32.1 bits (73), Expect = 0.19
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQR 47
G +LA++GP+G GKTT A ++ R
Sbjct: 183 AQGGVLALVGPTGVGKTTTTAKLAAR 208
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 29.5 bits (67), Expect = 0.20
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACIS 45
I G+LL GPSG+GK+TL+ I
Sbjct: 19 IDPKGTLLT--GPSGSGKSTLIDAIQ 42
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 32.0 bits (72), Expect = 0.21
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQR 47
+S + E G + A+MGP+G GKTT A ++ R
Sbjct: 128 DSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 31.6 bits (73), Expect = 0.21
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
G ++G SG GK+TLL
Sbjct: 84 KGKTSVLVGQSGVGKSTLL 102
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel [Central intermediary metabolism, Nitrogen
metabolism].
Length = 199
Score = 31.4 bits (71), Expect = 0.22
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDT 84
+ + GP G+GKT L+ +++ ++ ++ N + +++ +VK S P+ L V+T
Sbjct: 4 IGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVET 63
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 31.3 bits (72), Expect = 0.22
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
+ G + I+G +G+GK++LL + R+ G IL++G+++ K + HDL
Sbjct: 28 KPGEKVGIVGRTGSGKSSLLLAL-FRLVELSSGSILIDGVDISK---------IGLHDL 76
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 31.0 bits (71), Expect = 0.23
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
G + G SG GK+TLL
Sbjct: 34 KGKTSVLAGQSGVGKSTLL 52
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 32.0 bits (73), Expect = 0.24
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 28 AIMGPSGAGKTTLLA-CISQ 46
I+GP+GAGKT LL+ ++Q
Sbjct: 440 LIIGPTGAGKTVLLSFLLAQ 459
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 31.6 bits (72), Expect = 0.24
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNG 60
+G + E ++ E S+ A +GPSG GK+T+L +++ + V+G++LL+G
Sbjct: 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 31.4 bits (72), Expect = 0.24
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD 51
++ I GP GAGK+TL + +Q D
Sbjct: 35 IVGIAGPPGAGKSTLAEFLEALLQQD 60
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 29.6 bits (67), Expect = 0.25
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD----VDGQILLNGL 61
++AI G SG+GK+T+ +++++ G +D ++L GL
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEGL 40
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLA 42
+ I E ++A++GP+G GKTT LA
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTLA 221
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 31.3 bits (71), Expect = 0.31
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEVEKNLM-VKVSGFVPQHDL 80
++ IMG +G+GK+ L ++ R ++ D + +GL++ N + ++ VP H L
Sbjct: 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLL 103
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 31.8 bits (72), Expect = 0.32
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 6 PLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
P+ + ++K E G LLA+ G +G+GK++LL I
Sbjct: 440 PVLKNISFK------LEKGQLLAVAGSTGSGKSSLLMMI 472
Score = 30.3 bits (68), Expect = 0.94
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL---EVEKNLMVKV 71
+ LS E G + ++G +G+GK+TLL+ + + + +G+I ++G+ V K
Sbjct: 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL--STEGEIQIDGVSWNSVTLQTWRKA 1293
Query: 72 SGFVPQ 77
G +PQ
Sbjct: 1294 FGVIPQ 1299
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 31.1 bits (70), Expect = 0.32
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKVSGFVPQHD 79
G + I+G +G+GK+TL ++ ++ G++L++G++ + + K+ G V Q+
Sbjct: 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP 86
Query: 80 LT-VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
T TV E + + L +E + VD L E+GL K ++ LSGG+ +
Sbjct: 87 ETQFVGRTVEEDLAFGPE---NLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQ 143
Query: 139 RVALA 143
VALA
Sbjct: 144 CVALA 148
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.0 bits (67), Expect = 0.33
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 26 LLAIMGPSGAGKTTL 40
++ I GP G+GK+TL
Sbjct: 1 IILITGPPGSGKSTL 15
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 30.6 bits (69), Expect = 0.33
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 8 FGDTNYKESLSGIAESGSLLAIM--GPSGAGKTTLLACISQRI 48
G E+L E ++ GP G GKTTL I+ +
Sbjct: 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 30.8 bits (70), Expect = 0.38
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV 82
+G +A++G SG GK+TLL LL GLE + ++G P +
Sbjct: 37 AGQFVAVVGRSGCGKSTLLR--------------LLAGLE-TPSAGELLAGTAPLAEARE 81
Query: 83 DTLTVHEHMTLMARLKMDRN----LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
DT + + L+ K+ N L R + A L +GL N LSGG+++
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA-LAAVGLADRANEWPAALSGGQKQ 140
Query: 139 RVALA 143
RVALA
Sbjct: 141 RVALA 145
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 274
Score = 30.7 bits (69), Expect = 0.39
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 26 LLAIMGPSGAGKTTLLACISQ 46
++A +GPSG GK+TLL C ++
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNR 68
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 30.7 bits (70), Expect = 0.42
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45
++ F P + +G+ +G L I GP+GAGK+T+L I+
Sbjct: 8 LKNFGPFREEQVI--DFTGLDNNG-LFLICGPTGAGKSTILDAIT 49
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the
ABC transporter family include the Walker A and Walker
B motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known
as the ABC signature sequence.
Length = 204
Score = 30.7 bits (70), Expect = 0.42
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 28 AIMGPSGAGKTTLLACIS 45
I+G +GAGKTT++ +
Sbjct: 26 LIVGQNGAGKTTIIEALK 43
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of
non-transporter proteins. ABC-type Class 2 contains
systems involved in cellular processes other than
transport. These families are characterized by the fact
that the ABC subunit is made up of duplicated, fused
ABC modules (ABC2). No known transmembrane proteins or
domains are associated with these proteins.
Length = 162
Score = 30.4 bits (69), Expect = 0.42
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 23 SGSLLAIMGPSGAGKTTLLACIS 45
GSL I GP+G+GK+T+L I
Sbjct: 20 EGSLTIITGPNGSGKSTILDAIG 42
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 31.2 bits (71), Expect = 0.43
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 29 IMGPSGAGKTTLLA 42
++GP G+GKTTLL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 30.2 bits (69), Expect = 0.46
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 26 LLAIMGPSGAGKTTLL 41
L+ I GPSGAGK+TL+
Sbjct: 2 LIVISGPSGAGKSTLV 17
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 31.1 bits (71), Expect = 0.47
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 44/146 (30%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVE----KNLMVKVSGFVP 76
+G +A++G SG+GK+T +A + R D+D G+ILL+G ++ +L +V+
Sbjct: 367 PAGKTVALVGRSGSGKST-IANLLTRFY-DIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 77 QHDLTVDTLT-----------VHEHMTLMARL--------KMDRNLHHVERARTVDALLK 117
L DT+ E + AR+ KMD L D ++
Sbjct: 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL---------DTVIG 475
Query: 118 ELGLLKCKNSVLNVLSGGERKRVALA 143
E G+L LSGG+R+R+A+A
Sbjct: 476 ENGVL---------LSGGQRQRIAIA 492
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 30.3 bits (69), Expect = 0.51
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQG 50
++ I G SG+GKTT+ +S+++
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGV 34
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 30.7 bits (70), Expect = 0.52
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 28 AIMGPSGAGKTTLL 41
I GP+G+GKTTLL
Sbjct: 438 LIFGPTGSGKTTLL 451
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.9 bits (70), Expect = 0.52
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 METFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45
++ F K SGI I+GP+GAGK+++L I+
Sbjct: 8 LKNFRSFKDIDIEKLFDSGIF------LIVGPNGAGKSSILDAIT 46
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 30.7 bits (69), Expect = 0.53
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI 56
N + I+GP+G+GKTT+L I + +D I
Sbjct: 11 FRCFLNLDITFG----ESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFI 56
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 30.4 bits (69), Expect = 0.55
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 26/137 (18%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG---DVDGQILLNGLEV-EKNLMV----KVSG 73
E G + ++G +G+GK+TL+ Q + G G+I+++G+++ +K + + K G
Sbjct: 31 EDGEFVGLIGHTGSGKSTLI----QHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 74 FV---PQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL----LKCKN 126
V P++ L +T+ +A ++ L E V + +GL K K+
Sbjct: 87 LVFQYPEYQLFEETIEKD-----IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 127 SVLNVLSGGERKRVALA 143
LSGG+++RVA+A
Sbjct: 142 PF--ELSGGQKRRVAIA 156
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 29.9 bits (67), Expect = 0.57
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+ + GPSG GKT+LL + + +
Sbjct: 23 GPPSVLLTGPSGTGKTSLLRELLEGLLVA 51
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 30.2 bits (69), Expect = 0.58
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACIS 45
E L G E G++ I GP G+GKT + C+
Sbjct: 13 DELLGGGFERGTITQIYGPPGSGKTNI--CLQ 42
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 30.1 bits (67), Expect = 0.63
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 26 LLAIMGPSGAGKTTLLACIS 45
L I+GP+G+GK+ LL ++
Sbjct: 1 LNVIIGPNGSGKSNLLKALA 20
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 30.7 bits (69), Expect = 0.64
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 23 SGSLLAIMGPSGAGKTTL--LACISQRIQGDVDGQILLNGLEV 63
G ++ I+G +G GK+TL L C Q +G+ILL+G V
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAV 406
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 30.4 bits (68), Expect = 0.66
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQ--------RIQGDVD--GQILLNGLEVEKNLMVKV 71
+ +GPSG GK+T+L +++ R +G V GQ + G V+ ++ +
Sbjct: 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY-GKGVDPVVVRRY 90
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKM------DRNLHHVERARTVDALLKELGLLKCK 125
G V Q ++++ +++ RL DR H ++ A D + +L K
Sbjct: 91 IGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL-----K 144
Query: 126 NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNL-- 182
S L+ LSGG+++R+ +A + + +D + LM LK D +
Sbjct: 145 VSGLS-LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203
Query: 183 --HHVERARTV 191
H++++A V
Sbjct: 204 VTHNMQQAIRV 214
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 30.0 bits (68), Expect = 0.67
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQ---RIQGDVD--GQILLNG---LEVEKNLMVKVSG 73
G AI+GP+GAGKTTLL+ ++ GDV G+ G E+ K + + VS
Sbjct: 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL-VSS 113
Query: 74 FVPQHDLTVDTLTVHE------HMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
+ + + TV + ++ + + + + A+ LL+ LG +
Sbjct: 114 ELHERFRVRE--TVRDVVLSGFFASIGIYQEDLTAE--DLAAAQW---LLELLGAKHLAD 166
Query: 127 SVLNVLSGGERKRVALA 143
LS GE++RV +A
Sbjct: 167 RPFGSLSQGEQRRVLIA 183
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 30.3 bits (69), Expect = 0.68
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 27 LAIMGPSGAGKTTLL 41
+A++G SG+GKTTL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 29.9 bits (68), Expect = 0.71
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQ 49
+ G GAGKTTL+ +++R++
Sbjct: 2 FIVFEGIDGAGKTTLIELLAERLE 25
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 29.9 bits (68), Expect = 0.75
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
L+ I GP+ +GKT L +++R+ G++
Sbjct: 5 LIVIAGPTASGKTALAIALAKRLGGEI 31
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 30.1 bits (68), Expect = 0.77
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 108 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
R R VD LK++G+ + + ++LSGG+++RVA+A
Sbjct: 122 RER-VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156
>gnl|CDD|213968 TIGR04355, HprK_rel_B, HprK-related kinase B. Members of this
protein family resemble (and often are misannotated as)
HprK, the serine kinase/phosphatase of the
phosphocarrier protein HPr. However, members do not
occur with an HPr homolog, but instead as part of a
distinctive gene cassette of unknown function.
Length = 351
Score = 30.0 bits (68), Expect = 0.80
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTL 40
+G+A +G LA+ G SG GK+TL
Sbjct: 150 AGVAHNGRGLALAGFSGMGKSTL 172
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 30.2 bits (68), Expect = 0.83
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 29/126 (23%)
Query: 25 SLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH----DL 80
S +A++GP+G GK+T+L IS +Q G + ++ V+++ F H DL
Sbjct: 536 SRIAMVGPNGIGKSTILKLISGELQ-PSSGTVF-------RSAKVRMAVFSQHHVDGLDL 587
Query: 81 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN---VLSGGER 137
+ + L L M R V + + A L G+ N L LSGG++
Sbjct: 588 SSNPL-----------LYMMRCFPGVPEQK-LRAHLGSFGV--TGNLALQPMYTLSGGQK 633
Query: 138 KRVALA 143
RVA A
Sbjct: 634 SRVAFA 639
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 29.9 bits (67), Expect = 0.85
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVD 53
+ ++G G GKTTLL + +
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGY 34
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 30.1 bits (68), Expect = 0.89
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 27/141 (19%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV--EKNLMVKVS 72
ESLS SG+ L I GP+G GK++L RI G++ + G K +
Sbjct: 469 ESLSFEVPSGNNLLICGPNGCGKSSL-----FRILGEL--WPVYGGRLTKPAKGKLF--- 518
Query: 73 GFVPQHD-LTVDTL--------TVHEHMTLMARLKM-DRNLHHVERARTVDALLKELGLL 122
+VPQ +T+ TL + + M R + D++L + + +L+ G
Sbjct: 519 -YVPQRPYMTLGTLRDQIIYPDSSED----MKRRGLSDKDLEQILDNVQLTHILEREGGW 573
Query: 123 KCKNSVLNVLSGGERKRVALA 143
++VLSGGE++R+A+A
Sbjct: 574 SAVQDWMDVLSGGEKQRIAMA 594
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 30.2 bits (68), Expect = 0.89
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQI 56
I GP+G+GK+TLLA I+ + + QI
Sbjct: 461 IFGPTGSGKSTLLALIAAQFRRYAGAQI 488
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 29.7 bits (66), Expect = 0.89
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTT---LLACISQRIQG--DVDGQILLNGLEVE 64
D N +S G ++I+G +G+GK+T L+ + + +G +DG++L E
Sbjct: 19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT--AENV 76
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 124
NL K+ D TV + + ++ + E + VD L + +L
Sbjct: 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDF 133
Query: 125 KNSVLNVLSGGERKRVALA 143
K LSGG+++RVA+A
Sbjct: 134 KTREPARLSGGQKQRVAVA 152
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 29.3 bits (66), Expect = 0.90
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 29 IMGPSGAGKTTL---LACI 44
I G SG+GKTTL LA
Sbjct: 20 IDGRSGSGKTTLAGALAAR 38
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.9 bits (67), Expect = 0.92
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47
I E G + A++GP+G GKTT A ++ R
Sbjct: 187 IIEQGGVYALIGPTGVGKTTTTAKLAAR 214
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 131 VLSGGERKRVALAVQTIIVQSGFVP 155
V SGGE R+ LA++ I+ + P
Sbjct: 431 VASGGELSRIMLALKVILSRKDDTP 455
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 30.1 bits (68), Expect = 1.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQG 50
G ++ + G SG GK+ L+ + + I
Sbjct: 24 GEVVLVAGESGIGKSALVNEVHKPITQ 50
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of
longer eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG 50
G ++ I G SG+GKTT+ I +++
Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 29.9 bits (68), Expect = 1.1
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 40/152 (26%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK---------VS 72
E + ++G +GAGK+TL+ ++ + D DG+I+ E++L+V V
Sbjct: 27 EDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIY-----EQDLIVARLQQDPPRNVE 80
Query: 73 GFVPQHDLTVDTL--------TVHEHMTLMARLKMDRNLHHVERARTV------------ 112
G V +D + + H+ L+ ++NL+ + + +
Sbjct: 81 GTV--YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR 138
Query: 113 -DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+ +L +LGL ++ L+ LSGG ++ AL
Sbjct: 139 INEVLAQLGL--DPDAALSSLSGGWLRKAALG 168
Score = 27.2 bits (61), Expect = 8.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 24 GSLLAIMGPSGAGKTTLL 41
G +A++GP+G GKTTLL
Sbjct: 345 GDKIALIGPNGCGKTTLL 362
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.5 bits (67), Expect = 1.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLA 42
+ + G + A+MGP+G GKTT A
Sbjct: 252 LLDRGGVFALMGPTGVGKTTTTA 274
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 126 NSVLNVLSGGERKRVALAVQTIIVQSGFVP 155
+ + SGGE R+ LA++ I+ + VP
Sbjct: 165 KPLAKIASGGELSRLMLALKAILARKDAVP 194
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV---DGQILLNGLEV 63
++ I GP+GAGK+ L +++R+ G++ D + GL+V
Sbjct: 23 VIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDV 63
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.6 bits (67), Expect = 1.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
+G + ++G SG GK+TL+
Sbjct: 163 AGKITVLLGQSGVGKSTLI 181
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 29.6 bits (67), Expect = 1.3
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 3 TFHPLFGDTNYKESLSGIAESGSLLAIMGPSGAGKT----TLLACISQRIQGDVDGQILL 58
FH G + +S E+G LA++G SG+GK+ ++L + G IL
Sbjct: 15 AFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF 74
Query: 59 NG---LEVEKNLMVKVSG----FVPQHDLT------------VDTLTVHEHMTLMARLKM 99
+G L + + V G + Q +T + L +H ++ A
Sbjct: 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAA---- 130
Query: 100 DRNLHHVERARTVDALLKELGLLKCK---NSVLNVLSGGERKRVALA 143
RAR ++ LL+ +G+ + + ++ + LSGG+R+RV +A
Sbjct: 131 -------ARARALE-LLELVGIPEPEKRLDAYPHELSGGQRQRVMIA 169
Score = 29.2 bits (66), Expect = 1.7
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 37/152 (24%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVE----------KNLMVKV-- 71
G L ++G SG+GK+TL + + I G+I +G +++ + M V
Sbjct: 313 GQTLGLVGESGSGKSTLGLALLRLI--PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQ 370
Query: 72 ---SGFVPQHDLTV-----DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL-L 122
P+ +TV + L VHE L ER + V L+E+GL
Sbjct: 371 DPYGSLSPR--MTVGQIIEEGLRVHE-----------PKLSAAERDQRVIEALEEVGLDP 417
Query: 123 KCKNSVLNVLSGGERKRVALAVQTIIVQSGFV 154
+N + SGG+R+R+A+A + +I++ +
Sbjct: 418 ATRNRYPHEFSGGQRQRIAIA-RALILKPELI 448
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58
+G + + GPSG+GK+TLL + D +GQIL+
Sbjct: 36 AGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILV 70
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD-VDG 54
++ +MG SG+GK+T+ +++R+ +DG
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDG 30
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 29.0 bits (65), Expect = 1.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 28 AIMGPSGAGKTTLL 41
++G G GK++LL
Sbjct: 1 VVVGRGGVGKSSLL 14
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 28.8 bits (65), Expect = 1.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 26 LLAIMGPSGAGKTTLL 41
++ +G SG+GKTTLL
Sbjct: 3 VIGFVGYSGSGKTTLL 18
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 29.4 bits (67), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
G + ++GPSG GK+TLL
Sbjct: 29 DGEFIVLVGPSGCGKSTLL 47
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 29 IMGPSGAGKTTLLACIS 45
I+GP+GAGK+TLL+ I+
Sbjct: 291 IVGPNGAGKSTLLSLIT 307
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 29.3 bits (66), Expect = 1.4
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVS--GFVPQH-D 79
G L+I+G +G+GK+T + I ++ + GQI+++G + E+N+ G V Q+ D
Sbjct: 33 GEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRHKIGMVFQNPD 91
Query: 80 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 139
TV + + ++ + H E V+ L+ +G+ K LSGG+++R
Sbjct: 92 NQFVGATVEDDVAFGLE---NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQR 148
Query: 140 VALA 143
VA+A
Sbjct: 149 VAIA 152
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases.
Length = 149
Score = 28.7 bits (65), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 29 IMGPSGAGKTTL-LACISQ 46
I GPSG GK+ L L I +
Sbjct: 19 ITGPSGIGKSELALELIKR 37
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 28 AIMGPSGAGKTTLLACI 44
I+ AGKTTL I
Sbjct: 14 GIVAHIDAGKTTLTERI 30
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).
Length = 515
Score = 29.5 bits (66), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+ + +G +L G SG GKTTL + + GD
Sbjct: 210 SANVGTNGDVLVFFGLSGTGKTTLSMDPKRELIGD 244
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQ 49
++ I GPSG+GKTT +S +++
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLR 24
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 29.6 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 13 YKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLN 59
YK+ L+ G A +G SG GK+T+L I +R+ +G I++N
Sbjct: 401 YKD-LNFTLTEGKTYAFVGESGCGKSTILKLI-ERLYDPTEGDIIIN 445
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 28.8 bits (64), Expect = 1.5
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 27 LAIMGPSGAGKTTLLACISQR--IQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDT 84
+ MGP GAGK T + +R I G IL ++ + + ++ ++ DL D+
Sbjct: 4 IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDS 63
Query: 85 LTVHEHMTLMARLK---------MDRNLHHVERARTVDALLKELGL 121
+ + + R++ +D VE+A +DALLK G
Sbjct: 64 VVIG---IIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGK 106
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQ 49
G + I G GAGKTT + +R++
Sbjct: 3 GMFIVIEGIDGAGKTTQAELLKERLE 28
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 28 AIMGPSGAGKTTLLACISQR 47
I G GKTTLL ++ R
Sbjct: 3 VITGGPSTGKTTLLEALAAR 22
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 29.1 bits (66), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTL 40
+ L+ G +A++G SG GK+TL
Sbjct: 186 DVLAAWLSGGKTVALLGSSGVGKSTL 211
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 29.0 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
E G + A++G +GAGK+TLL ++ GD+ G G V
Sbjct: 25 EPGRVTALLGRNGAGKSTLLKALA----GDLTGGGAPRGARV 62
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 29.1 bits (66), Expect = 1.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 27 LAIMGPSGAGKTTLL 41
+ I+ AGKTTL
Sbjct: 11 IGILAHIDAGKTTLT 25
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 28.9 bits (65), Expect = 1.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 26 LLAIMGPSGAGKTTLLA 42
LL ++G SG GKTTLL
Sbjct: 207 LLGVVGYSGTGKTTLLE 223
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 29.0 bits (65), Expect = 1.8
Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 34/157 (21%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV-EKNLMVKVSG 73
E L G GS++ I GP G GKT Q L G E L V
Sbjct: 14 EILGGGLPRGSVVLITGPPGTGKTIFAL------------QFLYEGAREGEPVLYVSTE- 60
Query: 74 FVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVL 132
+ + + D + +DA L E GL + V
Sbjct: 61 ---ESPEEL--------LENARSFGWDLEVYIEKGKLAILDAFLSEKGL-----VSIVVG 104
Query: 133 SGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEH 169
+ + + ++ I+ + +D++T
Sbjct: 105 DPLDLEELLDRIREIV---EKEGADRVVIDSITELTL 138
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether
UreG binds GTP or some other nucleotide. Both enzymes
are involved in nickel binding. HypB can store nickel
and is required for nickel dependent hydrogenase
expression. UreG is required for functional
incorporation of the urease nickel metallocenter. GTP
hydrolysis may required by these proteins for nickel
incorporation into other nickel proteins. This family
of domains also contains P47K, a Pseudomonas
chlororaphis protein needed for nitrile hydratase
expression, and the cobW gene product, which may be
involved in cobalamin biosynthesis in Pseudomonas
denitrificans.
Length = 178
Score = 28.4 bits (64), Expect = 1.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 29 IMGPSGAGKTTLL 41
+ G G+GKTTLL
Sbjct: 5 LTGFLGSGKTTLL 17
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 254
Score = 28.9 bits (64), Expect = 1.8
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 25 SLLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEVEKN 66
S+ A++GPSG GK+T L +++ ++G ++G ++ G + N
Sbjct: 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 26 LLAIMGPSGAGKTTLLACISQR 47
++A++GP G GK+TL+ + +R
Sbjct: 71 IVAVVGPPGTGKSTLIRSLVRR 92
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 26 LLAIMGPSGAGKTTLLACISQ 46
LL + G SG GKTT L ++
Sbjct: 10 LLGVAGDSGCGKTTFLRGLAD 30
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase,
contains alpha, beta, and gamma chains. In older
literature, the complex of alpha, beta, and gamma
chains was termed component C, while this single chain
protein was termed methyl coenzyme M reductase system
component A2 [Energy metabolism, Methanogenesis].
Length = 520
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLL 41
F +++S E G +L I+G SGAGK+ L+
Sbjct: 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM 43
Score = 27.1 bits (60), Expect = 7.2
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 31/145 (21%)
Query: 24 GSLLAIMGPSGAGKTTL---LACISQRIQGDV-----DGQILLNGLEV-EKNLMVKVSGF 74
G + I+G SGAGKTTL +A + + G+V D + + + + G
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 75 VPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-NS 127
+ Q H +D LT + L L + + LK +G + K
Sbjct: 370 LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI----------TLKMVGFDEEKAEE 419
Query: 128 VLN----VLSGGERKRVALAVQTII 148
+L+ LS GER RVALA Q +I
Sbjct: 420 ILDKYPDELSEGERHRVALA-QVLI 443
>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein
RadB. This family consists exclusively of archaeal
RadB protein, a homolog of bacterial RecA (TIGR02012),
eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and
archaeal RadA (TIGR02236).
Length = 209
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTL 40
E L G E G++ I GP G+GKT +
Sbjct: 2 DELLGGGVERGTITQIYGPPGSGKTNI 28
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 268
Score = 28.8 bits (64), Expect = 2.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ----GDVDGQILLNGLEV 63
+G+ +S E ++ A++GPSG GK+T L I++ +G+IL GL +
Sbjct: 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ 49
+ E+ +L I G S +GKTT +A + + ++
Sbjct: 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.0 bits (63), Expect = 2.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 21 AESGSLLAIMGPSGAGKTTLLA 42
+ + G SG+GKTTLL
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLR 22
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 28.5 bits (64), Expect = 2.2
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
++G + I+G +GAGK+TL+ + + ++ + +G+I ++G+++ +P DL
Sbjct: 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDIST---------IPLEDLR 81
Query: 82 VDTLTVHEHMTLMA---RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
+ + TL + R +D + + + G L+ LN LS G+R+
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDE--------EIYGALRVSEGGLN-LSQGQRQ 132
Query: 139 RVALA 143
+ LA
Sbjct: 133 LLCLA 137
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 27 LAIMGPSGAGKTTLLACISQ 46
+AI+G SG+GK+TL +SQ
Sbjct: 3 IAIIGYSGSGKSTLARKLSQ 22
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 28.8 bits (65), Expect = 2.2
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 23 SGSLLAIMGPSGAGKTTLLACI---SQRIQGDV--DGQILLN-----GLEVEKNLMVKVS 72
G +L + G GAG+T L+ + R G V DG ++ GL N +V +S
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL---ANGIVYIS 333
Query: 73 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK----NSV 128
+ D V ++V E+M+L A R ++ A A+ + L K
Sbjct: 334 E-DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392
Query: 129 LNVLSGGERKRVALA 143
+ +LSGG +++VA+A
Sbjct: 393 IGLLSGGNQQKVAIA 407
Score = 27.7 bits (62), Expect = 4.8
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 83
G ++A++G +GAGK+T++ ++ D G IL G E V +G P+
Sbjct: 30 GRVMALVGENGAGKSTMMKVLTGIYTRDA-GSILYLGKE------VTFNG--PKSSQEAG 80
Query: 84 TLTVHEHMTLMARLKMDRN-------------LHHVERARTVDALLKELGLLKCKNSVLN 130
+H+ + L+ +L + N + + D LL L L + ++
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG 140
Query: 131 VLSGGERKRVALA 143
LS GE++ V +A
Sbjct: 141 ELSIGEQQMVEIA 153
>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction
only].
Length = 187
Score = 28.2 bits (63), Expect = 2.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDG 54
+ ++GP GAGKTT + +S + +
Sbjct: 13 IVVIGPVGAGKTTFVRALSDKPLVITEA 40
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 26 LLAIMGPSGAGKTTLLA 42
+L I+GP +GKTTL+
Sbjct: 1 VLQIVGPKNSGKTTLIE 17
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 265
Score = 28.4 bits (63), Expect = 2.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 28 AIMGPSGAGKTTLLACISQ 46
A++GPSG GK+T L C ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNR 64
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 286
Score = 28.7 bits (64), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 28 AIMGPSGAGKTTLLACISQ 46
AI+GPSG GK+T L I++
Sbjct: 69 AIIGPSGCGKSTFLRAINR 87
>gnl|CDD|218024 pfam04317, DUF463, YcjX-like family, DUF463. These proteins
possess a P-loop motif.
Length = 443
Score = 28.7 bits (65), Expect = 2.4
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 27 LAIMGPSGAGKTTLL-ACISQRIQGDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTV 82
LA+ G S AGKT + + ++Q + G G+ L E + L VK VPQ D TV
Sbjct: 3 LAVTGLSRAGKTAFITSLVNQLLHGGNGGR--LPLFEAAREGRLLGVKR---VPQPDDTV 57
Query: 83 DTLTVHEHMTLMARLKMDR 101
H +A L D
Sbjct: 58 PRFDYEAH---LAALTGDP 73
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 28.1 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
+G ++ I G +G+GKTT+ + +R++ I L+G E
Sbjct: 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 29.0 bits (65), Expect = 2.5
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLL------ACISQRIQGDVDGQILLNG 60
D + L + + LL I+G G+GKTT L DV +LLN
Sbjct: 207 ADDQDALPGLEALEKYAKLL-ILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNA 264
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 27.8 bits (63), Expect = 2.5
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 28 AIMGPSGAGKTTLLACISQRI 48
AI GP+G+GK+T+ +++++
Sbjct: 3 AIDGPAGSGKSTVAKLLAKKL 23
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 28.2 bits (64), Expect = 2.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGD 51
G + I G GAGK+T + + + ++
Sbjct: 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion.
Length = 165
Score = 27.8 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQG 50
L+ + GP+G+GKTTL ++ I
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIAT 25
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 28.5 bits (64), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 22 ESGSLLAIMGPSGAGKTTLL 41
G +AI+G +G+GKTT +
Sbjct: 31 NQGEFIAIIGQTGSGKTTFI 50
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 28.6 bits (65), Expect = 2.7
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ I+GP+ +GKT L +++R+ G++
Sbjct: 6 VIVIVGPTASGKTALAIELAKRLNGEI 32
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 28.4 bits (64), Expect = 2.9
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 22 ESGSLLAIMGPSGAGKTTLL 41
SGS +AI+G +G+GK+TLL
Sbjct: 31 PSGSYVAIIGHTGSGKSTLL 50
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 27.9 bits (63), Expect = 3.0
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 14 KESLSGIAESGSLLAIM-GPSGAGKTTLLA 42
+E++ + SG +A++ GP+G GKTT L
Sbjct: 7 REAVRHVLTSGDRVAVVQGPAGTGKTTSLK 36
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 26.5 bits (59), Expect = 3.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACI 44
A SL + G G GKT A I
Sbjct: 6 AASGRSLFVVDGGPGTGKTATAAAI 30
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 28.2 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G+ + L IA G++ L + GP G GKTT + ++ + G
Sbjct: 17 GNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange.
Length = 202
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 22 ESGSLLAIMGPSGAGKTTLL 41
SG LL I GP+ GK+T L
Sbjct: 27 GSGRLLLITGPNMGGKSTYL 46
>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication,
recombination, and repair].
Length = 279
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTL 40
G E+L G G + I GP +GKTTL
Sbjct: 44 TGSLALDEALGGGLPRGRITEIYGPESSGKTTL 76
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 28.1 bits (63), Expect = 3.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 29 IMGPSGAGKTTLLA 42
++GPS +GKT L
Sbjct: 5 LLGPSDSGKTALFT 18
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family
for which functions are known are part of an
exonuclease complex with sbcD homologs. This complex is
involved in the initiation of recombination to regulate
the levels of palindromic sequences in DNA. This family
is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 1042
Score = 28.4 bits (63), Expect = 3.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDV 52
G + I G +GAGKTTLL I+ + G +
Sbjct: 26 GPIFLICGKTGAGKTTLLDAITYALYGKL 54
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 27.6 bits (62), Expect = 3.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGD 51
+ I GP G GKTTL+ + + ++ +
Sbjct: 2 IFITGPPGVGKTTLVKKVIELLKSE 26
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly
regulated anion channel at the apical surface of many
epithelia. Use of the term assembly of a functional ion
channel implies the coming together of subunits or at
least smaller not-yet functional components of the
active whole. In fact, on the basis of current
knowledge only the CFTR polypeptide itself is required
to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2.
Length = 275
Score = 28.3 bits (63), Expect = 3.1
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV---KV 71
E++S G + ++G +G+GK+TLL+ + + + +G I ++G+ + K
Sbjct: 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGDIQIDGVSWNSVPLQKWRKA 78
Query: 72 SGFVPQ 77
G +PQ
Sbjct: 79 FGVIPQ 84
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 25 SLLAIMGPSGAGKTTLL 41
SL+AI G SG+GKT+LL
Sbjct: 1517 SLVAISGVSGSGKTSLL 1533
Score = 28.3 bits (63), Expect = 4.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 114 ALLKELGL-LKCKNSVLNVLSGGERKRVALA 143
++L +LGL L LSGGE++R ALA
Sbjct: 458 SILIDLGLPYLTPERALATLSGGEQERTALA 488
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 28.1 bits (63), Expect = 3.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 26 LLAIMGPSGAGKTTLLACISQR 47
++ ++GP G GK+TL+ + +R
Sbjct: 41 VVVVVGPPGVGKSTLIRSLIKR 62
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport
and metabolism].
Length = 216
Score = 28.0 bits (63), Expect = 3.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDV 52
+ I G GAGK+TL +++ + V
Sbjct: 7 IVIEGMIGAGKSTLAQALAEHLGFKV 32
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex.
In the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 28.3 bits (63), Expect = 3.4
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 87 VHEH-MTLMARLKMDRNLHHVERARTVDAL-LKELGLLKCK-NSVLNVLSGGERKRVALA 143
V + + K + VD + L L + NS + + E++ +
Sbjct: 586 VTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQI 645
Query: 144 VQTIIVQSGFVPQHDLTVDTLTVH 167
++ + Q G + + ++TV TL
Sbjct: 646 IRNALKQEGQLSRQEVTVPTLKPV 669
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 27.7 bits (62), Expect = 3.5
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDT 84
+L I+G +GKTTL+ + ++++ G V VK + HD +D
Sbjct: 4 ILGIVGYKNSGKTTLIEKLVRKLKAR--------GYRV---ATVKHAH----HDFDLDK 47
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 27.7 bits (61), Expect = 3.7
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 28/137 (20%)
Query: 26 LLAIMGPSGAGKTTLLACISQR---IQG-DVDGQILLNGLEV-EKNLMV----KVSGFVP 76
+ AI+GPSG GK+TLL +++ + G ++G +LL+ + NL V K G V
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 77 QH-----DLTVDTLTVHEHM---TLMARLK--MDRNLHHVERARTVDALLKELGLLKCKN 126
Q D + M T +RL ++++L V L + GL
Sbjct: 92 QQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----- 146
Query: 127 SVLNVLSGGERKRVALA 143
LSGG+++R+ +A
Sbjct: 147 ----ALSGGQQQRLCIA 159
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 28.3 bits (64), Expect = 3.8
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 29 IMGPSGAGKTTLLA 42
++GP+GAGK+ LLA
Sbjct: 446 VVGPTGAGKSVLLA 459
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
+ +G G GKTTL +Q +QG
Sbjct: 3 IMFIGSVGCGKTTL----TQALQG 22
>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 27.8 bits (62), Expect = 3.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 27 LAIMGPSGAGKTTLLACISQRI 48
L ++GP G GKT L I +
Sbjct: 108 LVLLGPPGVGKTHLAIAIGNEL 129
>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain.
This domain contains a P-loop motif, also found in
several other families such as pfam00071, pfam00025 and
pfam00063. Elongation factor Tu consists of three
structural domains, this plus two C-terminal beta
barrel domains.
Length = 184
Score = 27.5 bits (62), Expect = 4.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 27 LAIMGPSGAGKTTLLACI 44
+ I+G GKTTL +
Sbjct: 6 IGIIGHVDHGKTTLTDAL 23
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 27.9 bits (63), Expect = 4.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLA 42
+ I + G ++A++GP+G GKTT LA
Sbjct: 211 PVRVEDILKQGGVVALVGPTGVGKTTTLA 239
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.9 bits (63), Expect = 4.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 29 IMGPSGAGKTTLL 41
+ G SG GK+TLL
Sbjct: 169 LAGQSGVGKSTLL 181
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.6 bits (62), Expect = 4.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 29 IMGPSGAGKTTLL 41
+ GP G+GKT L+
Sbjct: 18 VGGPPGSGKTALI 30
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 5 HPLFGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTL 40
LFG L+ ++ E G + ++G SG GK+TL
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTL 53
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 27.8 bits (62), Expect = 4.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 27 LAIMGPSGAGKTTLLACI 44
+ I+GPSG+GK+TLL +
Sbjct: 4 MLIVGPSGSGKSTLLKLL 21
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles
in homologous recombination, DNA repair, and the
induction of the SOS response. RecA couples ATP
hydrolysis to DNA strand exchange. While prokaryotes
have a single RecA protein, eukaryotes have multiple
RecA homologs such as Rad51, DMC1 and Rad55/57.
Archaea have the RecA-like homologs radA and radB.
Length = 226
Score = 27.5 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 19 GIAESGSLLAIMGPSGAGKTTL 40
GI +G + I G G+GKT L
Sbjct: 15 GI-PTGRITEIFGEFGSGKTQL 35
>gnl|CDD|236750 PRK10751, PRK10751, molybdopterin-guanine dinucleotide
biosynthesis protein B; Provisional.
Length = 173
Score = 27.3 bits (61), Expect = 4.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 26 LLAIMGPSGAGKTTLL 41
LLAI SG GKTTLL
Sbjct: 8 LLAIAAWSGTGKTTLL 23
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 27.7 bits (62), Expect = 4.5
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47
I E G ++A++GP+G GKTT LA ++ R
Sbjct: 191 ILERGGVIALVGPTGVGKTTTLAKLAAR 218
>gnl|CDD|224410 COG1493, HprK, Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction
mechanisms].
Length = 308
Score = 27.6 bits (62), Expect = 4.5
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 29 IMGPSGAGKTTL-LACISQ 46
I GPSGAGK+ L L I +
Sbjct: 150 ITGPSGAGKSELALELIKR 168
>gnl|CDD|234034 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 270
Score = 27.7 bits (62), Expect = 4.6
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDT 84
I+ P GKTTLL +++ + + Q+ L G +V E++ + VPQHD+ + T
Sbjct: 116 IISPPQCGKTTLLRDLARILSTGIS-QLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRT 174
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.8 bits (63), Expect = 4.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 30 MGPSGAGKTTLL 41
+G SGAGKTTL
Sbjct: 1 VGHSGAGKTTLT 12
>gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated.
Length = 183
Score = 27.3 bits (61), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 29 IMGPSGAGKTTLLACISQRIQ 49
I G SG+G TTL A +++R+
Sbjct: 6 ITGASGSGTTTLGAALAERLD 26
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a
wide variety of presumed phage proteins.
Length = 201
Score = 27.3 bits (61), Expect = 4.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 28 AIMGPSGAGKTTLLA 42
I GP G GKT+L
Sbjct: 7 LIYGPPGIGKTSLAK 21
>gnl|CDD|75717 PRK06731, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 270
Score = 27.4 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
+A++GP+G GKTT LA ++ + G
Sbjct: 78 IALIGPTGVGKTTTLAKMAWQFHG 101
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 276
Score = 27.8 bits (61), Expect = 4.9
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 25 SLLAIMGPSGAGKTTLLACISQ---RIQG-DVDGQILLNGLEV 63
++ ++MGP+G+GKTT L +++ ++ G G +LL G +
Sbjct: 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 27.3 bits (61), Expect = 4.9
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN-LMVKVSGFVPQH 78
G +LA++G SG+GK+ I + G+ILL+G + + + + Q+
Sbjct: 12 GEVLALVGESGSGKSLTCLAI-LGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70
Query: 79 DLTVDT--LTVHEHM--TLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--- 131
T T+ H TL + K+ + RA ++AL +GL + VL
Sbjct: 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQ----ARALILEALEA-VGLPDPE-EVLKKYPF 124
Query: 132 -LSGGERKRVALAV 144
LSGG +RV +A+
Sbjct: 125 QLSGGMLQRVMIAL 138
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 259
Score = 27.6 bits (61), Expect = 5.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 28 AIMGPSGAGKTTLLACISQRIQG----DVDGQILLNGLEVEKN 66
AI+GPSG GK+T + ++ IQ + G++ NG + K
Sbjct: 42 AIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.7 bits (62), Expect = 5.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 125 KNSVLNVLSGGERKRVALAV 144
KN L++LSGGE+ ALA+
Sbjct: 1083 KNQNLSLLSGGEKALTALAL 1102
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 27.5 bits (61), Expect = 5.8
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG-------LEVEKNLMVKVSGFVP 76
G L+ ++G +G+GK+TL ++ Q G+ILL+G LE + L V F
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLEDYRKLFSAV--FSD 405
Query: 77 QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGE 136
H L L + +++ L +E A LK LS G+
Sbjct: 406 YH-LFDQLLGPEGKASPQ---LIEKWLQRLELAHKTSLNDGRFSNLK--------LSTGQ 453
Query: 137 RKRVALAV 144
+KR+AL +
Sbjct: 454 KKRLALLL 461
>gnl|CDD|226648 COG4185, COG4185, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 27.0 bits (60), Expect = 5.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 25 SLLAIMGPSGAGKTTLLACISQRIQGDV 52
L + GP+G+GK+T+ A + +
Sbjct: 3 RLDIVAGPNGSGKSTVYASTLAPLLPGI 30
>gnl|CDD|183360 PRK11889, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 436
Score = 27.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
+A++GP+G GKTT LA ++ + G
Sbjct: 244 IALIGPTGVGKTTTLAKMAWQFHG 267
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 26.8 bits (60), Expect = 5.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVD 53
AI G GK++LL + + G V
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVS 26
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 27.4 bits (61), Expect = 6.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 28 AIMGPSGAGKTTLL 41
I+GP+GAGKT L+
Sbjct: 450 LIIGPTGAGKTVLM 463
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 27.5 bits (62), Expect = 6.1
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQ 49
++AI GP+GAGK+T+ +++++
Sbjct: 286 IIAIDGPAGAGKSTVTRAVAKKLG 309
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 27.6 bits (62), Expect = 6.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRI 48
GS++ I G G GK+TLL ++ R+
Sbjct: 93 GSVILIGGDPGIGKSTLLLQVAARL 117
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 27.2 bits (61), Expect = 6.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 24 GSLLAIMGPSGAGKTTLL 41
G L + G SG+GK++L+
Sbjct: 21 GVLTCVTGVSGSGKSSLI 38
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 27.0 bits (61), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGD 51
I G SG+GKTT+ + I + + +
Sbjct: 10 GIAGGSGSGKTTVASTIYEELGDE 33
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 27.0 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFV 75
E GS A +G +G+GK+T++ LLNGL V V+V +
Sbjct: 31 EDGSYTAFIGHTGSGKSTIMQ--------------LLNGLHVPTQGSVRVDDTL 70
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 27.1 bits (60), Expect = 6.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 22 ESGSLLAIMGPSGAGKTTLL 41
E GS +A++G +G+GK+TL+
Sbjct: 31 EEGSFVALVGHTGSGKSTLM 50
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 27.3 bits (61), Expect = 6.6
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACI--SQRIQGDVDGQILLNGLEVEKNLMVKV 71
E L ++++ ++ I+G G GKTTL I + G D V V
Sbjct: 9 IEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVA-----------WVVV 57
Query: 72 SGFVPQHDLTVDTLT 86
S + L D L
Sbjct: 58 SKTYTEFRLQKDILQ 72
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 27.5 bits (61), Expect = 6.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLA 42
E++ + SG + ++G +G GK+T+L
Sbjct: 358 YEAVRHVTGSGDIAVVVGRAGTGKSTMLK 386
>gnl|CDD|238688 cd01394, radB, RadB. The archaeal protein radB shares similarity
radA, the archaeal functional homologue to the
bacterial RecA. The precise function of radB is
unclear.
Length = 218
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTL 40
E L G E G++ + GP G GKT +
Sbjct: 10 ELLGGGVERGTVTQVYGPPGTGKTNI 35
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 27.1 bits (60), Expect = 6.8
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSG- 73
+ LS G LAI+G +G+GK+TL ++ I+ G++L++ + S
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQR 88
Query: 74 --FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL-N 130
+ Q T L L+++ +L +R + + L+++GLL S +
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148
Query: 131 VLSGGERKRVALAVQTIIVQ 150
+L+ G+++R+ LA + +I++
Sbjct: 149 MLAPGQKQRLGLA-RALILR 167
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 130 NVLSGGERKRVALAVQ 145
LSGGE +R+ LA Q
Sbjct: 487 GTLSGGEAQRIRLATQ 502
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine
tRNA modification enzyme. Catalyzes the first step in
the modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 27.0 bits (60), Expect = 6.9
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ +MGP+ +GK+ L ++Q++ ++
Sbjct: 1 VIFLMGPTASGKSQLSIQLAQKLNAEI 27
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 27.0 bits (60), Expect = 7.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQG 50
++ + G SGAGKTT+
Sbjct: 1 IIGVTGSSGAGKTTVARTFVSIFGR 25
>gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional.
Length = 561
Score = 27.3 bits (61), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQGD 51
+ + G + G SG GKTTL A ++++ GD
Sbjct: 252 VGKKGDVTLFFGLSGTGKTTLSADPNRKLIGD 283
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 27.4 bits (61), Expect = 7.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 20 IAESGS-LLAIMGPSGAGKTTLLACISQRI 48
IA+S L+ MG G GKTT+ A I+ R+
Sbjct: 316 IAKSEKGLIMTMGKGGVGKTTVAAAIAVRL 345
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 26.9 bits (60), Expect = 7.1
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 54/150 (36%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDL 80
G +AI+G +G+GK+TL LLNGL + + + V G V L
Sbjct: 30 VYEGEWVAIVGHNGSGKSTLAK--------------LLNGLLLPEAGTITVGGMV----L 71
Query: 81 TVDTL---------------------TVHEHMTL------MARLKMDRNLHHVERARTVD 113
+ +T+ TV + + + R +M VER VD
Sbjct: 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM------VER---VD 122
Query: 114 ALLKELGLLKCKNSVLNVLSGGERKRVALA 143
L+++G+ N + LSGG+++RVA+A
Sbjct: 123 QALRQVGMEDFLNREPHRLSGGQKQRVAIA 152
>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding
protein. Members of this family are found in a range
of archaea and eukaryotes and have hypothesised ATP
binding activity.
Length = 235
Score = 26.9 bits (60), Expect = 7.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 29 IMGPSGAGKTTLLACISQRIQ 49
++GP+G+GKTT + +S+ +
Sbjct: 1 VVGPAGSGKTTFVGALSEILP 21
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 26.8 bits (60), Expect = 7.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 27 LAIMGPSGAGKTTLLACISQR 47
+ + G GAGK+TL +++
Sbjct: 2 IVVEGNIGAGKSTLAKELAEH 22
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 27.3 bits (60), Expect = 7.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 18 SGIAESGS--LLAIMGPSGAGKTTLLACISQRIQGDVDGQIL-------LNGLEV 63
SGI +SGS +L I G G GKT + + Q +Q ++L +NG+ V
Sbjct: 773 SGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 27.0 bits (61), Expect = 7.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 28 AIMGPSGAGKTTL 40
AI GP+G+GK T+
Sbjct: 8 AIDGPAGSGKGTV 20
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 27.2 bits (61), Expect = 7.3
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 22 ESGSLLAIMGPSGAGKTT---LLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQH 78
+ G LL ++G +G+GK+T LL + Q G+ILL+G V +
Sbjct: 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ----PQSGEILLDGKPVTAEQPEDYR----KL 398
Query: 79 DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL---LKCK-NSVLNV-LS 133
V T H L +L + A V+ L+ L + L+ + + N+ LS
Sbjct: 399 FSAVFT-DFH----LFDQL-LGPEGKPANPAL-VEKWLERLKMAHKLELEDGRISNLKLS 451
Query: 134 GGERKRVAL 142
G++KR+AL
Sbjct: 452 KGQKKRLAL 460
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 27.1 bits (60), Expect = 7.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 28 AIMGPSGAGKTTLLACISQRIQ 49
AI+GPSG GK+T + +++ ++
Sbjct: 54 AIIGPSGCGKSTYIKTLNRMVE 75
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer
from ATP to uridine or cytidine to yield UMP or CMP. In
the primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as
5-flurrouridine and cyclopentenyl-cytidine.
Length = 198
Score = 26.7 bits (60), Expect = 7.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQG 50
++ I G SG+GKTT+ I +++
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGN 25
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 26.9 bits (60), Expect = 7.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
Y + + + L + G G GKT L ACI
Sbjct: 102 KYVKKFEEMKKENVGLLLWGSVGTGKTYLAACI 134
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 26.5 bits (59), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 25 SLLAIMGPSGAGKTTLLACISQ 46
+ + G +G+GKTTLL I+
Sbjct: 1 RTVILQGEAGSGKTTLLQKIAL 22
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 29 IMGPSGAGKTTLLACISQR 47
+ G GAGKTTLLA +++
Sbjct: 14 LTGGPGAGKTTLLAALARA 32
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional.
Length = 385
Score = 26.9 bits (60), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 175 RLK-MDRNLHHVERARTVDALLKELGLLKCRPADEL 209
RLK D LH+ +R R + + +ELGL D L
Sbjct: 210 RLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSL 245
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49
(TIP49) was originally identified as a TBP-binding
protein, and two related proteins are encoded by
individual genes, tip49a and b. Although the function
of this gene family has not been elucidated, they are
supposed to play a critical role in nuclear events
because they interact with various kinds of nuclear
factors and have DNA helicase activities.TIP49a has
been suggested to act as an autoantigen in some
patients with autoimmune diseases.
Length = 395
Score = 26.9 bits (60), Expect = 8.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
+G + I GP G GKT L IS+ + D
Sbjct: 49 AGRAVLIAGPPGTGKTALAIAISKELGEDT 78
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 26.7 bits (60), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 125 KNSVLNVLSGGERKRVALAV 144
K L++LSGGE+ ALA+
Sbjct: 107 KVQRLSLLSGGEKALTALAL 126
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 26.1 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 29 IMGPSGAGKTT-LLACISQRIQGDVDGQILL 58
+ P+G+GKT L I + + GQ+L+
Sbjct: 5 LAAPTGSGKTLAALLPILELLDSLKGGQVLV 35
>gnl|CDD|132514 TIGR03474, incFII_RepA, incFII family plasmid replication initiator
RepA. Members of this protein are the plasmid
replication initiator RepA of incFII (plasmid
incompatibility group F-II) plasmids. R1 and R100 are
plasmids in this group. Immediately upstream of repA is
found tap, a leader peptide of about 24 amino acids,
often not assigned as a gene in annotated plasmid
sequences. Note that other, non-homologous plasmid
replication proteins share the gene symbol (repA) and
similar names (plasmid replication protein RepA).
Length = 275
Score = 26.9 bits (59), Expect = 9.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 65 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL 119
+ LM K GF + D ++ H+ L + + + R R +DALL+ +
Sbjct: 24 RKLMAKAEGFTSRFDFSI-------HVAFARSLGLRHRMPPLLRRRAIDALLQGM 71
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 26.8 bits (60), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 131 VLSGGERKRVALAVQTIIVQ 150
V SGGE R+ALA+Q I +
Sbjct: 430 VASGGELSRIALAIQVITAR 449
>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1). Arl1 subfamily.
Arl1 (Arf-like 1) localizes to the Golgi complex, where
it is believed to recruit effector proteins to the
trans-Golgi network. Like most members of the Arf
family, Arl1 is myristoylated at its N-terminal helix
and mutation of the myristoylation site disrupts Golgi
targeting. In humans, the Golgi-localized proteins
golgin-97 and golgin-245 have been identified as Arl1
effectors. Golgins are large coiled-coil proteins found
in the Golgi, and these golgins contain a C-terminal
GRIP domain, which is the site of Arl1 binding.
Additional Arl1 effectors include the GARP
(Golgi-associated retrograde protein)/VFT (Vps53)
vesicle-tethering complex and Arfaptin 2. Arl1 is not
required for exocytosis, but appears necessary for
trafficking from the endosomes to the Golgi. In
Drosophila zygotes, mutation of Arl1 is lethal, and in
the host-bloodstream form of Trypanosoma brucei, Arl1
is essential for viability.
Length = 158
Score = 26.2 bits (58), Expect = 9.1
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 29 IMGPSGAGKTTLLACISQRIQ-GDVDGQILLNGLEVE----KNLMVKV 71
I+G GAGKTT+L R+Q G+V I G VE KNL +V
Sbjct: 4 ILGLDGAGKTTIL----YRLQVGEVVTTIPTIGFNVETVTYKNLKFQV 47
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 26.2 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 5/28 (17%)
Query: 29 IMGPSGAGKTTLLACISQR-----IQGD 51
+MG +G+GK+T+ + ++ R I+GD
Sbjct: 3 LMGVAGSGKSTIASALAHRLGAKFIEGD 30
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 26.7 bits (59), Expect = 9.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
G ++ + G SG+GK+T+ + ++++ +L+G V L
Sbjct: 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGL 61
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related
to the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 26.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 29 IMGPSGAGKTTLLACISQRIQGD 51
++GP+GAGKTT++ C+ GD
Sbjct: 33 LVGPNGAGKTTIIECLKYICTGD 55
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo
and salvage pathways of DTTP synthesis. Catalytic
activity: ATP + thymidine 5'-phosphate = ADP +
thymidine 5'-diphosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 26.6 bits (59), Expect = 9.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRIQ 49
G + I G GAGKTT + + +Q
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 25.8 bits (57), Expect = 9.6
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 26 LLAIMGPSGAGKTTLL 41
++ ++GP +GKTTL+
Sbjct: 2 IVLVVGPKDSGKTTLI 17
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 27.0 bits (60), Expect = 9.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 29 IMGPSGAGKTTLL 41
++GP G+GKTT L
Sbjct: 130 VIGPPGSGKTTAL 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.382
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,651,202
Number of extensions: 1000026
Number of successful extensions: 2324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 620
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.4 bits)