RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8250
(212 letters)
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 73.9 bits (182), Expect = 1e-15
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
E G G ++ I+GP+G GKTT + ++ + +G++ + V+ +
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDL---------TVA-Y 421
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
PQ+ TV+E ++ + K++ N LLK LG++ + + LSG
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVEDLSG 474
Query: 135 GERKRVALAV 144
GE +RVA+A
Sbjct: 475 GELQRVAIAA 484
Score = 67.3 bits (165), Expect = 2e-13
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 18/147 (12%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLE 62
+G + I + G ++ I+GP+G GKTT + ++ ++ + ++
Sbjct: 101 YGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 63 ------VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 116
+ L V + + + + K+ L V+ + ++
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDEVGKFEEVV 213
Query: 117 KELGLLKCKNSVLNVLSGGERKRVALA 143
KEL L + L+ LSGGE +RVA+A
Sbjct: 214 KELELENVLDRELHQLSGGELQRVAIA 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 71.0 bits (175), Expect = 2e-15
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
E G+++ GP+G GKTTLL IS ++ G+I+ NG+ + K F+P+ +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITKVK--GKIFFLPEEIIV 89
Query: 82 VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 141
++V +++ +A L + + + L+ + +L K + LS G +RV
Sbjct: 90 PRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEVLDLKKKLGE-LSQGTIRRVQ 143
Query: 142 LAVQTII 148
LA T++
Sbjct: 144 LA-STLL 149
Score = 27.5 bits (62), Expect = 2.7
Identities = 6/49 (12%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
F+P+ + ++V +++ +A L + + + L+ + +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--IMDALESVEV 124
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 68.7 bits (169), Expect = 2e-14
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
G +LA++G +G GK+TLL + I + G+I EV +++ GFVPQ +
Sbjct: 29 NKGDILAVLGQNGCGKSTLLDLLL-GIHRPIQGKI-----EVYQSI-----GFVPQFFSS 77
Query: 82 VDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK 138
+V + + LM R + + L L L LSGG+R+
Sbjct: 78 PFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAKREFTSLSGGQRQ 135
Query: 139 RVALA 143
+ +A
Sbjct: 136 LILIA 140
Score = 29.8 bits (68), Expect = 0.54
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 121 LLKCKNSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMAR---LK 177
LL + + G ++ + Q+I GFVPQ + +V + + LM R +
Sbjct: 47 LLDLLLGIHRPIQG----KIEVY-QSI----GFVPQFFSSPFAYSVLD-IVLMGRSTHIN 96
Query: 178 MDRNLHHVERARTVDALLKELGL--LKCRPADEL 209
+ L L L L R L
Sbjct: 97 TFAKPKSHDYQV-AMQALDYLNLTHLAKREFTSL 129
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 68.3 bits (168), Expect = 3e-14
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKN- 66
G + +S E G + ++GP+GAGKTT L IS I+ G + + G V +
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEP 83
Query: 67 LMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
V+ ++P+ + E++ +A E V+ + GL +
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKI 140
Query: 126 NSVLNVLSGGERKRVALA 143
++ S G +++ +A
Sbjct: 141 KDRVSTYSKGMVRKLLIA 158
Score = 31.4 bits (72), Expect = 0.15
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 152 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 200
++P+ + E++ +A E V+ + GL
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGL 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 7e-14
Identities = 45/228 (19%), Positives = 84/228 (36%), Gaps = 55/228 (24%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTL--LACISQRIQGDVDGQIL-LN-G--------L 61
+++L + + I G G+GKT + C+S ++Q +D +I LN L
Sbjct: 141 RQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 62 EVEKNLMVKVSG-FVPQHDLTVDT-LTVHEHMTLMARLKMDRN-------LHHVERARTV 112
E+ + L+ ++ + + D + + L +H + RL + L +V+ A+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 113 DALLKELGLLKCK-------NSVLNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLT 165
+A L CK V + LS ++L D TLT
Sbjct: 260 NAF-----NLSCKILLTTRFKQVTDFLSAATTTHISL---------------DHHSMTLT 299
Query: 166 VHEHMTLMAR-LKMD-RNLHHVERARTVDALLKELGLLKCRPADELNR 211
E +L+ + L ++L T + L ++ D L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP--REVLTTNPRR--LSIIAESIRDGLAT 343
Score = 36.4 bits (83), Expect = 0.005
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 48/144 (33%)
Query: 104 HHVERARTVDAL---LKEL---------GLLKCKNSVL----------------NV--LS 133
++V R + L L EL G+L + + + L+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 134 GGERKR---VALAVQTIIVQ--SGFVPQHDLTVDT-LTVHEHMTLMARLKMDRN------ 181
V +Q ++ Q + + D + + L +H + RL +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 182 -LHHVERARTVDALLKELGLLKCR 204
L +V+ A+ +A L C+
Sbjct: 249 VLLNVQNAKAWNAF-----NLSCK 267
Score = 30.2 bits (67), Expect = 0.52
Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 56/164 (34%)
Query: 88 HEHM-TLMARLKMDRN--LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 144
H HM + L E DA + ++ ++LS E +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFE-----DAFVDNFDCKDVQDMPKSILSKEE-------I 51
Query: 145 QTIIVQSGFVPQHDLTVDTL------TVHEHMT---------LMARLKMD---------- 179
II+ V TL V + + LM+ +K +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 180 ----RNL----------HHVERARTVDALLKELGLLKCRPADEL 209
R+ ++V R + L + LL+ RPA +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNV 153
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 65.7 bits (161), Expect = 2e-13
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKV 71
LSG +G +L ++GP+GAGK+TLLA ++ G G I G +E +
Sbjct: 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALH 74
Query: 72 SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
++ Q V + L + ++ ++ + L L N
Sbjct: 75 RAYLSQQQTPPFATPVWHY------LTLHQHDKTRTEL--LNDVAGALALDDKLGRSTNQ 126
Query: 132 LSGGERKRVALA 143
LSGGE +RV LA
Sbjct: 127 LSGGEWQRVRLA 138
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 65.4 bits (160), Expect = 1e-12
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
E G + G ++ I+GP+G GKTT + ++ + +G+I + V+ +
Sbjct: 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWDL---------TVA-Y 351
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
PQ+ TV+E L + + LLK LG++ + +N LSG
Sbjct: 352 KPQYIKADYEGTVYE-------LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSG 404
Query: 135 GERKRVALAV 144
GE +RVA+A
Sbjct: 405 GELQRVAIAA 414
Score = 60.0 bits (146), Expect = 6e-11
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 26/151 (17%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ-----GDVDGQILLNGLE 62
+G + + + G ++ I+GP+G GK+T + ++ ++ + ++
Sbjct: 31 YGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFR 90
Query: 63 VE--KNLMVKVSG----FVPQHDLTVDTLTVHEHMT----LMARLKMDRNLHHVERARTV 112
+N K+ V + + K+ L + +
Sbjct: 91 GNELQNYFEKLKNGEIRPVVK-----------PQYVDLIPKAVKGKVIELLKKADETGKL 139
Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+ ++K L L + LSGGE +RVA+A
Sbjct: 140 EEVVKALELENVLEREIQHLSGGELQRVAIA 170
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 65.1 bits (159), Expect = 1e-12
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77
G +L +MG +G GKTTL+ ++ ++ D +GQ + VS PQ
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKL---------NVS-MKPQ 420
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
TV + L + + ++K L + + + LSGGE
Sbjct: 421 KIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGEL 473
Query: 138 KRVALA 143
+RVA+
Sbjct: 474 QRVAIV 479
Score = 61.2 bits (149), Expect = 2e-11
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQ-------RIQGDVDGQILLNG 60
+ ++K G +L ++G +G GK+T L ++ R + Q ++
Sbjct: 87 YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 61 LEVEK--NLMVKV------SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 112
+ N K+ + PQ+ + + LK+ + V
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDV 202
Query: 113 DALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+K L L + LSGGE +R A+
Sbjct: 203 KRYIKILQLENVLKRDIEKLSGGELQRFAIG 233
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 64.3 bits (157), Expect = 2e-12
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQ 77
+G A+ G ++ I+GP+G GKTT + I D +G + + + PQ
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQIL---------SYKPQ 337
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER 137
TV +++ ++ + + E + K L L + S +N LSGGE
Sbjct: 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEE------VTKRLNLHRLLESNVNDLSGGEL 391
Query: 138 KRVALAV 144
+++ +A
Sbjct: 392 QKLYIAA 398
Score = 63.9 bits (156), Expect = 3e-12
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQRIQ---GDVDGQILLNGLEVEKNLMVKVSGFVP 76
++ ++L ++G +G GKTT+L ++ I GD + ++ + EV K K
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD--EVLKRFRGKEIYNYF 78
Query: 77 QHDLTVDTLTVH-----EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
+ + + VH E+ + + ++ L ++ D + + L + N N+
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 132 LSGGERKRVALA 143
LSGG +R+ +A
Sbjct: 139 LSGGGLQRLLVA 150
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 61.6 bits (150), Expect = 9e-12
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK-NLMVKVSGFVPQHDLTV 82
G + I+GP+G+GKTTLL IS + G I +NG+EV K ++ S +P+
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI- 86
Query: 83 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVA 141
+T+ + + L ++R +LK L L + L LS G+ V
Sbjct: 87 -------GVTVNDIVYLYEELKGLDRDL-FLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 142 LA 143
+
Sbjct: 139 TS 140
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 61.5 bits (150), Expect = 1e-11
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRI---QGDVD------GQILLNGLEVEKNLMVKVS 72
G + G +GAGKTTLL ++ G V+ G++ + V +++
Sbjct: 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI----- 99
Query: 73 GFVPQ--HDLTVDTLTVHE--HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 128
GFV + + V + + + +++ R LLK +G+
Sbjct: 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQY 158
Query: 129 LNVLSGGERKRVALA 143
+ LS GE++RV +A
Sbjct: 159 IGYLSTGEKQRVMIA 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 58.7 bits (143), Expect = 6e-11
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 32/148 (21%)
Query: 15 ESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQRIQGDVD----GQILLNGLEVEK-- 65
E L GI+ + G ++I+G SG+GK+TLL I G +D G++ L G EV+
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLL-----YILGLLDAPTEGKVFLEGKEVDYTN 72
Query: 66 --------NLMVKVSGFVPQ-HDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDAL 115
N + GFV Q H L + LT E++ + M ++ + E + L
Sbjct: 73 EKELSLLRNRKL---GFVFQFHYL-IPELTALENVIVPMLKMGKPKK----EAKERGEYL 124
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L ELGL + LSGGE++RVA+A
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIA 152
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 57.6 bits (140), Expect = 2e-10
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 22 ESGSLLAIMGPSGAGKTTL---LACISQRIQGDV--DGQILLNGLEVEK-------NLMV 69
+ G ++IMGPSG+GK+T+ + C+ D +G++ ++ ++ +
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNIIGCL------DKPTEGEVYIDNIKTNDLDDDELTKIRR 82
Query: 70 KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSV 128
GFV Q + LT E++ L K + ER + LK L + N
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142
Query: 129 LNVLSGGERKRVALA 143
N LSGG+++RVA+A
Sbjct: 143 PNQLSGGQQQRVAIA 157
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 53.3 bits (129), Expect = 6e-09
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
G+ ++GP+GAGK+ L I+ ++ D G++ LNG ++
Sbjct: 11 LGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITP-- 64
Query: 68 MVKVSGFVPQHDLTVDT----------LTVHEHMT--LMARLKMDRNLHHVERARTVDAL 115
+P + L+V+ ++ L RN+ VER R V +
Sbjct: 65 -------LPPERRGIGFVPQDYALFPHLSVYRNIAYGL-------RNVERVERDRRVREM 110
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
++LG+ + LSGGER+RVALA
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALA 138
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 53.0 bits (128), Expect = 1e-08
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV------EKNLMVKVSGFV 75
G ++ ++GPSG+GKTT+L I+ + G + + G V ++N+ G V
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV-----GLV 92
Query: 76 PQHDLTVDTLTVHEHMTLMAR----LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 131
Q+ + +HMT+ L+ + + E V LL+ + L N +
Sbjct: 93 FQN------YALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFPHE 145
Query: 132 LSGGERKRVALA 143
LSGG+++RVALA
Sbjct: 146 LSGGQQQRVALA 157
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 51.4 bits (124), Expect = 4e-08
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
ESG I+GP+GAGKT L I+ D G+ILL+G +V +
Sbjct: 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTD---------LSPEKHD 73
Query: 82 VDT----------LTVHEHMTLMA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 130
+ + V ++ + ++M + ++ + V ++L + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKN---LEFGMRMKK----IKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 131 VLSGGERKRVALA 143
LSGGE++RVALA
Sbjct: 127 TLSGGEQQRVALA 139
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 51.2 bits (122), Expect = 7e-08
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 22/137 (16%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNL 67
+G + I GP+G GK+TL+ I+ G VDG
Sbjct: 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA---NGQVDGFPTQEECRT---- 497
Query: 68 MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK-N 126
+V D H +++ + V + L E G
Sbjct: 498 -----VYVEH-----DIDGTHSDTSVLDFVFES----GVGTKEAIKDKLIEFGFTDEMIA 543
Query: 127 SVLNVLSGGERKRVALA 143
++ LSGG + ++ALA
Sbjct: 544 MPISALSGGWKMKLALA 560
Score = 34.6 bits (79), Expect = 0.020
Identities = 27/184 (14%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 15 ESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGF 74
++ S +A++GP+GAGK+TL+ ++ G++L EV + ++ +
Sbjct: 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLT--------GELLPTSGEVYTHENCRI-AY 740
Query: 75 VPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
+ QH H+ + E T+D +++ +
Sbjct: 741 IKQHAFAHI----ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796
Query: 135 GERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 194
G +R+A ++ +++ + + M + + R V++
Sbjct: 797 GTPRRIAGIHSRRKFKN--TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESH 854
Query: 195 LKEL 198
K +
Sbjct: 855 SKMV 858
Score = 32.7 bits (74), Expect = 0.090
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL 85
+ I T C + + N + V H V +
Sbjct: 802 IAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEV 861
Query: 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALA 143
+ E + R L + ++ LGL +S + LSGG++ ++ LA
Sbjct: 862 DMKEAL----ASGQFRPL----TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLA 913
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 50.3 bits (121), Expect = 1e-07
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 37/155 (23%)
Query: 8 FGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQG--DVD-GQILLNGLEV- 63
F +T +S + G +L I+G SG GKTTLL C++ G D G+I L+G +
Sbjct: 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA----GFEQPDSGEISLSGKTIF 69
Query: 64 EKNLMVKVS----GFVPQ------HDLTVDTLTVHEHMTLMAR-----LKMDRNLHHVER 108
KN + V G++ Q H LTV R L +
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPH-LTV------------YRNIAYGLGN-GKGRTAQE 115
Query: 109 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 143
+ ++A+L+ G+ + + LSGG+++R ALA
Sbjct: 116 RQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 49.5 bits (119), Expect = 1e-07
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 46/166 (27%)
Query: 8 FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLE 62
+G E L G+ A +G +++I+G SG+GK+T L CI+ + G I++NG
Sbjct: 16 YGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNGQN 69
Query: 63 VEKNLMVKVS----------------GFVPQ------HDLTVDTLTVHEHMTL--MARLK 98
+ V Q H +TV E++ + L
Sbjct: 70 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH------MTVLENVMEAPIQVLG 123
Query: 99 MDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALA 143
+ ++ ERA L ++G+ + + LSGG+++RV++A
Sbjct: 124 LSKH-DARERAL---KYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 49.1 bits (118), Expect = 2e-07
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 8 FGDTNYKESLSGIA---ESGSLLAIMGPSGAGKTTLLACISQ--RIQGDVDGQILLNGLE 62
FG E L GI G ++ ++GPSG+GK+T L C++ G+I+++G+
Sbjct: 34 FGSL---EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGIN 87
Query: 63 VEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHHVERARTVDAL 115
++ N + + G V Q +TV ++TL M K R +A L
Sbjct: 88 LKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE-KAEAKAM---EL 143
Query: 116 LKELGLLKCKNSVLNVLSGGERKRVALA 143
L ++GL ++ + LSGG+ +RVA+A
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIA 171
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 49.2 bits (118), Expect = 2e-07
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV----EKNLMV--KVSGFV 75
+G + ++G SGAGK+TL+ C++ ++ +G +L++G E+ E L + G +
Sbjct: 52 PAGQIYGVIGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMI 110
Query: 76 PQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
QH + + TV ++ L + ++ E R V LL +GL +S + LSG
Sbjct: 111 FQHFNLLSSRTVFGNVALPLELDNTPKD----EVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 135 GERKRVALA 143
G+++RVA+A
Sbjct: 167 GQKQRVAIA 175
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 46.7 bits (112), Expect = 1e-06
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 33/145 (22%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT 81
G + I+GP+G+GK+TL+ I+ ++ D +G++ ++ +L
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITN---------KEPAELY 80
Query: 82 -------------VDTLTVHEHMTLMARLKMDRNL--------HHVERA--RTVDALLKE 118
+ +TV E++ + + L E +L+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 119 LGLLKCKNSVLNVLSGGERKRVALA 143
L L + LSGG+ K V +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIG 165
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 46.8 bits (112), Expect = 1e-06
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV---EKNLMV---KVSGFV 75
+ G + AI+G +G GK+TL + ++ G+IL + + K +M + G V
Sbjct: 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMKLRESI-GIV 89
Query: 76 ---PQHDLTVDTLTVHEHMTLMARLKMD-----RNLH--HVERARTVDALLKELGLLKCK 125
P + L +V++ D N+ E + VD LK G+ K
Sbjct: 90 FQDPDNQL-FSA-SVYQ----------DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK 137
Query: 126 NSVLNVLSGGERKRVALA 143
+ + LS G++KRVA+A
Sbjct: 138 DKPTHCLSFGQKKRVAIA 155
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEV----EK 65
LSG+ + GSL+A++G +G+GK+TL+ I R+ D + G++ ++ L+V K
Sbjct: 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLI-DPERGRVEVDELDVRTVKLK 413
Query: 66 NLMVKVSGFVPQ 77
+L + VPQ
Sbjct: 414 DLRGHI-SAVPQ 424
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 43.8 bits (104), Expect = 2e-05
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEVEKNLMVKVS------G 73
E+G I+GPSGAGKTT + I+ G++ + V N + V G
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 74 FVPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 127
V Q + LT E++ L + E + V+ + K L + N
Sbjct: 86 MVFQTWALYPN------LTAFENIAF--PLTN-MKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 128 VLNVLSGGERKRVALA 143
LSG +++RVALA
Sbjct: 137 FPRELSGAQQQRVALA 152
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 42.6 bits (101), Expect = 3e-05
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 9 GDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
G K++L + G L + G +G+GK+TLL ++ I+ G +L +G +
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKG 73
Query: 66 NLMVKVSGFV---PQHDLTVDTLTVHEHMTLMARLKMD-----RNLH-HVERARTVDALL 116
+ + G P+ + V + + +N + + V +
Sbjct: 74 YEIRRNIGIAFQYPEDQFFAE--RVFD----------EVAFAVKNFYPDRDPVPLVKKAM 121
Query: 117 KELGL--LKCKNSVLNVLSGGERKRVALA 143
+ +GL K+ V LSGGE++RVA+A
Sbjct: 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 42.4 bits (101), Expect = 3e-05
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK---NLMVKVS-GFVPQ 77
G ++ ++G +GAGKTT L+ I+ + G+I+ NG ++ +++ ++ VP+
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPE 88
Query: 78 HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL------LKELGLLKCKNSVLNV 131
LTV+E++ + A + D+ R ++ + LKE +
Sbjct: 89 GRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKER-----LKQLGGT 139
Query: 132 LSGGERKRVALA 143
LSGGE++ +A+
Sbjct: 140 LSGGEQQMLAIG 151
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 41.4 bits (98), Expect = 7e-05
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS- 72
L I SG+ A++G +G+GK+T+ + R D +G I + G V K +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL-YRFY-DAEGDIKIGGKNVNK---YNRNS 90
Query: 73 -----GFVPQ 77
G VPQ
Sbjct: 91 IRSIIGIVPQ 100
Score = 27.5 bits (62), Expect = 3.4
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 132 LSGGERKRVALA 143
LSGGER+R+A+A
Sbjct: 156 LSGGERQRIAIA 167
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 40.2 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMV 69
++ L I A+ S++A GPSG GK+T+ + + +R G+I ++G ++ +
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-ERFY-QPTAGEITIDGQPIDN---I 69
Query: 70 KVS------GFVPQ 77
+ GFV Q
Sbjct: 70 SLENWRSQIGFVSQ 83
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 39.5 bits (93), Expect = 4e-04
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVS 72
L I +G +A++G SG+GK+T+ + I R D+D G IL++G ++ + ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI-TRFY-DIDEGHILMDGHDLRE---YTLA 413
Query: 73 ------GFVPQH 78
V Q+
Sbjct: 414 SLRNQVALVSQN 425
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 39.5 bits (93), Expect = 5e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK----VSGFVPQ 77
SGS+ A++GPSG+GK+T+L+ + R+ G I L+G ++ + L G V Q
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDI-RQLNPVWLRSKIGTVSQ 425
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 38.7 bits (91), Expect = 5e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 10 DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
+ L I E G LLA+ G +GAGKT+LL I ++ +G+I +G
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG 69
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 39.5 bits (93), Expect = 5e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 10 DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEK 65
K +LS + G +A++G SG+GK+T+ + R DVD G I L+G +V
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFY-DVDSGSICLDGHDVRD 409
Query: 66 NLMVKVS------GFVPQH 78
K++ V Q+
Sbjct: 410 ---YKLTNLRRHFALVSQN 425
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 9 GDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACIS---QRIQGDVD 53
L I E G LLA+ G +GAGKT+LL I + +G +
Sbjct: 46 FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 38.3 bits (90), Expect = 0.001
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 17 LSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEVEKNLMVKVS 72
L I E G +A +G SG GK+TL+ I R DV GQIL++G ++
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFY-DVTSGQILIDGHNIKD---FLTG 411
Query: 73 ------GFVPQ 77
G V Q
Sbjct: 412 SLRNQIGLVQQ 422
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 37.8 bits (89), Expect = 0.001
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVS------GFV 75
+ G ++ I+G SG+GK+TL I QR +GQ+L++G ++ + G V
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI-QRFYIPENGQVLIDGHDLAL---ADPNWLRRQVGVV 88
Query: 76 PQ 77
Q
Sbjct: 89 LQ 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 37.5 bits (88), Expect = 0.001
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 10 DTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACIS---QRIQGDVD 53
+ +L+GI G+L+A++G G GK++LL+ + +++G V
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 37.5 bits (88), Expect = 0.001
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG-----LEVE 64
+ L G+ G + A+MGP+GAGK+TL ++ + V G+ILL+G L +
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD 75
Query: 65 K 65
+
Sbjct: 76 E 76
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
+ G LA++G SG GK+T++ + +R + G + L+G E+++
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL-ERFYDPMAGSVFLDGKEIKQ 1099
Score = 36.2 bits (84), Expect = 0.006
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK 65
+SG +A++G SG GK+T + + QR+ +DG + ++G ++
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLM-QRLYDPLDGMVSIDGQDIRT 456
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 37.2 bits (87), Expect = 0.002
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 48/163 (29%)
Query: 8 FGDTNYKESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDVD-GQILLNGLEV 63
F + +E+L + G LA++GPSGAGK+T+L + R D+ G I ++G ++
Sbjct: 61 FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFY-DISSGCIRIDGQDI 118
Query: 64 EKNLMVKVS------GFVPQHDLTVDTLTVHEHMTLMARLKM------DRNLHHVERART 111
+ V + G VPQ DT+ ++ T+ ++ + + +A
Sbjct: 119 SQ---VTQASLRSHIGVVPQ-----DTVLFND--TIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 112 VDALLKEL-----------GLLKCKNSVLNVLSGGERKRVALA 143
+ + GL LSGGE++RVA+A
Sbjct: 169 IHDAIMAFPEGYRTQVGERGL---------KLSGGEKQRVAIA 202
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 37.1 bits (87), Expect = 0.002
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 14 KESLSGI---AESGSLLAIMGPSGAGKTTLLACISQRIQGDV-DGQILLNG-----LEVE 64
K L G+ G + AIMGP+G+GK+TL A ++ R +V G + G L E
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 36.7 bits (86), Expect = 0.002
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
+ + E G L+ + GPSG GK T+ + + +
Sbjct: 2 NAMTERGLLIVLSGPSGVGKGTVREAVFKDPETSF 36
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 36.7 bits (86), Expect = 0.003
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVK----VSGFVPQ 77
G + A++GP+G+GK+T+ A + Q + G++LL+G + V Q
Sbjct: 43 YPGKVTALVGPNGSGKSTVAALL-QNLYQPTGGKVLLDGEPL-VQYDHHYLHTQVAAVGQ 100
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 35.6 bits (83), Expect = 0.005
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
+ S + G +L + PSG GKTT+ + ++ + ++
Sbjct: 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 36.4 bits (85), Expect = 0.005
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQR---IQGDVDGQILLNGLEVEK 65
++ + G +A++GP+G+GKTT++ + R + GQIL++G+++ K
Sbjct: 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDR---GQILVDGIDIRK 421
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 35.8 bits (83), Expect = 0.006
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G + + L ++GS+ L GP G GKTT +++ + G+
Sbjct: 29 GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 34.8 bits (81), Expect = 0.009
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
+ + GPSGAGK+TLL + Q
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQE 27
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 34.8 bits (81), Expect = 0.009
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
+L I PSGAGKT+L+ + +
Sbjct: 7 ANLFIISAPSGAGKTSLVRALVKA 30
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 34.8 bits (81), Expect = 0.010
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
G+L + PSGAGK++L+ + +
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKT 39
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 34.8 bits (81), Expect = 0.010
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
E G L+ + GPSG GK T+ I +
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 35.0 bits (81), Expect = 0.012
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G + L G E ++ L GP G GKT +++ + G+
Sbjct: 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 34.5 bits (80), Expect = 0.012
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 20 IAESGSLLAIMGPSGAGKTTLLACISQR 47
A G ++ + GPS GK+T++ C+ +R
Sbjct: 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 34.5 bits (80), Expect = 0.012
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 19 GIAESGSLLAIMGPSGAGKTTLLACISQR 47
G + L I GPSG GK TL+ +
Sbjct: 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNE 46
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 34.3 bits (79), Expect = 0.014
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 25 SLLAIMGPSGAGKTTLLACISQR 47
+L+ + GP K+T+ A +S+
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKE 24
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 34.4 bits (80), Expect = 0.014
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQR 47
L + GPSG GK TL+ +
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSE 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 34.5 bits (80), Expect = 0.015
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G + L G E ++ L GP G GKT +++ + G+
Sbjct: 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 34.5 bits (80), Expect = 0.015
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 41/141 (29%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEV------EKNL-MVKVS 72
+ G +A++GPSG+GK+TLL I+ + G+I + +V ++N+ +V
Sbjct: 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDEKDVTELPPKDRNVGLV--- 80
Query: 73 GFVPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKN 126
F Q H +TV++++ L++ R E + V + K L + +
Sbjct: 81 -F--QNWALYPH------MTVYKNIAF--PLEL-RKAPREEIDKKVREVAKMLHI----D 124
Query: 127 SVLN----VLSGGERKRVALA 143
+LN LSGG+++RVA+A
Sbjct: 125 KLLNRYPWQLSGGQQQRVAIA 145
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 34.3 bits (78), Expect = 0.017
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 10 DTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
YK + + + +MG SG+GK+++ I++
Sbjct: 4 SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEAC 42
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 34.1 bits (79), Expect = 0.020
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
G G L + GP +GKTTL V
Sbjct: 16 GF-APGVLTQVYGPYASGKTTLALQTGLLSGKKV 48
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.7 bits (75), Expect = 0.051
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD 51
+L I G S +GKTTL +SQ ++
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQ 49
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.0 bits (76), Expect = 0.053
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 39/140 (27%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACIS--QRIQGDVDGQILLNGLEV------EKNL-MVKVS 72
+ G +A++GPSG GKTT L ++ + G+I + + V + + MV
Sbjct: 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDDVLVNDIPPKYREVGMV--- 80
Query: 73 GFVPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELG---LLK 123
F Q H +TV E++ L+ R + E + V + ++L LL
Sbjct: 81 -F--QNYALYPH------MTVFENIAF--PLRA-RRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 124 CKNSVLNVLSGGERKRVALA 143
K + LSGG+++RVALA
Sbjct: 129 RKPT---QLSGGQQQRVALA 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 32.1 bits (74), Expect = 0.070
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 26 LLAIMGPSGAGKTTLLACISQR 47
+ I GPSG GK+TLL +
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAE 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 32.6 bits (75), Expect = 0.070
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 41/144 (28%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG--DV-DGQILLNGLEVEKNLMVKVSGFVPQ- 77
+ G + ++GPSG GKTT L I+ G + GQI + V K P+
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIA----GLEEPSRGQIYIGDKLV--ADPEKGIFVPPKD 80
Query: 78 --------------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK 123
H +TV++++ LK+ R + E + V + + LGL
Sbjct: 81 RDIAMVFQSYALYPH------MTVYDNIAF--PLKL-RKVPRQEIDQRVREVAELLGL-- 129
Query: 124 CKNSVLN----VLSGGERKRVALA 143
+LN LSGG+R+RVAL
Sbjct: 130 --TELLNRKPRELSGGQRQRVALG 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 32.0 bits (72), Expect = 0.084
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 19 GIAESGSLLAIMGPSGAGKTTLLACISQRI 48
G++L + G G+GK+T+ ++
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLP 33
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 31.9 bits (72), Expect = 0.10
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ I GP G GKT + +R+ G
Sbjct: 7 IIWINGPFGVGKTHTAHTLHERLPGSF 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 32.0 bits (73), Expect = 0.11
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 29/130 (22%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDT 84
++G +G+GK+TLL+ R+ + +G+I ++G+ + +PQ + + +
Sbjct: 52 LLGRTGSGKSTLLSAFL-RLL-NTEGEIQIDGVSWDSITLEQWRKAFG-VIPQ-KVFIFS 107
Query: 85 LTVHEHMTLMARLKMD-----------RNLHHVERARTVDALLKELGLLKCKNSVLNVLS 133
T R +D + V ++ +L + LS
Sbjct: 108 GTF--------RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKL-DFVLVDGGCV-LS 157
Query: 134 GGERKRVALA 143
G ++ + LA
Sbjct: 158 HGHKQLMCLA 167
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 31.3 bits (71), Expect = 0.14
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQIL 57
GP +GKTT L I ++ G+++
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMV 47
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.7 bits (72), Expect = 0.16
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
L E ++G + +GKTT L I I
Sbjct: 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 31.4 bits (71), Expect = 0.16
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
LL +MG +G GK+ L ++ +V
Sbjct: 42 LLVLMGATGTGKSRLSIDLAAHFPLEV 68
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.6 bits (71), Expect = 0.16
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNG 60
++++ G SGAG +T+ Q + + + + G
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.8 bits (72), Expect = 0.16
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 24 GSLLAIMGPSGAGKTTLLA 42
S++ G +G GKT L++
Sbjct: 281 DSIILATGATGTGKTLLVS 299
Score = 29.9 bits (67), Expect = 0.72
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 12/38 (31%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGL 61
G + G SG GKT Q L NG+
Sbjct: 39 GRSTLVSGTSGTGKTLFSI------------QFLYNGI 64
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.2 bits (70), Expect = 0.16
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
+S + +MG SG+GK+ + + ++ ++
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQL 32
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 31.1 bits (71), Expect = 0.18
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 24 GSLLAIMGPSGAGKTTLL 41
G +A+ G G GKT
Sbjct: 23 GFFIALTGEPGTGKTIFS 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 31.1 bits (70), Expect = 0.18
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 26 LLAIMGPSGAGKTTLLACISQRI 48
L+ + G GKTTL ++ +
Sbjct: 7 LIIVTGHPATGKTTLSQALATGL 29
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 31.2 bits (71), Expect = 0.18
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
+++ + G G GKT Q L NGL+
Sbjct: 23 RNVVLLSGGPGTGKTIFSQ------------QFLWNGLK 49
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.0 bits (71), Expect = 0.19
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLL 41
+ + + L ++G SG G++ +
Sbjct: 7 HSSGRENLYFQGRKTLVLIGASGVGRSHIK 36
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 30.9 bits (71), Expect = 0.20
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 21 AESGSLLAIMGPSGAGKTTLL 41
+ L ++G G G+ +
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIK 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 31.1 bits (71), Expect = 0.21
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 43/142 (30%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQG--DV-DGQILLNGLEV------EKNL-MVKV 71
+ G L ++GPSG GKTT L I+ G + +G+I +V ++N+ MV
Sbjct: 35 KDGEFLVLLGPSGCGKTTTLRMIA----GLEEPTEGRIYFGDRDVTYLPPKDRNISMV-- 88
Query: 72 SGFVPQ------HDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK 125
F Q H +TV+E++ LK+ + E + V + L +
Sbjct: 89 --F--QSYAVWPH------MTVYENIAF--PLKI-KKFPKDEIDKRVRWAAELLQI---- 131
Query: 126 NSVLN----VLSGGERKRVALA 143
+LN LSGG+R+RVA+A
Sbjct: 132 EELLNRYPAQLSGGQRQRVAVA 153
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 30.7 bits (70), Expect = 0.22
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ I G + +GKTTL +++ + V
Sbjct: 8 VIGIAGGTASGKTTLAQALARTLGERV 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.8 bits (70), Expect = 0.22
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 12 NYKESLSGIAESGSLLAIMGPSGAGKTTLLACI 44
+ + L + G G GKT LLA I
Sbjct: 43 RFVAEYEPGKKMKGLY-LHGSFGVGKTYLLAAI 74
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 31.2 bits (70), Expect = 0.23
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLL 41
+F L E+ L ++G GK++LL
Sbjct: 14 IFDREEESRKLEESLENYPLTLLLGIRRVGKSSLL 48
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 30.7 bits (70), Expect = 0.23
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVD 53
IMG G+GKT L+ +RI +V
Sbjct: 35 IMGAIGSGKTLLIERTIERIGNEVK 59
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.7 bits (69), Expect = 0.24
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 26 LLAIMGPSGAGKTT---LLA---CISQRIQGDVDGQILLNGLE 62
L I GP+G GK+T LA S I+GD+ +++ G
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYR 46
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.7 bits (70), Expect = 0.25
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVD 53
MG G+GKT L+ + ++
Sbjct: 43 FMGAIGSGKTLLIEKLIDNLKDKYK 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.0 bits (70), Expect = 0.25
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
+ + GP+GAGK++L
Sbjct: 22 QSGITVVEGPNGAGKSSLF 40
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 30.6 bits (69), Expect = 0.26
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMV 69
L+ + G G GK+T +++ + + I+L + ++ V
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV 49
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.9 bits (70), Expect = 0.26
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD 51
L+ + G + +GK+T+ I + + +
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQN 52
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 0.27
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 26 LLAIMGPSGAGKTTLL 41
+ ++G +GKTTL+
Sbjct: 6 VWQVVGYKHSGKTTLM 21
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.28
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDG 54
+ I G G GKTTL+ I +R+ G
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIG 30
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 30.5 bits (69), Expect = 0.30
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 29 IMGPSGAGKTTLL 41
I GP +GKT+LL
Sbjct: 17 IAGPQNSGKTSLL 29
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.5 bits (69), Expect = 0.30
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 29 IMGPSGAGKTTLL 41
I GP +GKT+LL
Sbjct: 53 IAGPQNSGKTSLL 65
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.3 bits (68), Expect = 0.31
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDV 52
AI G GAGK+T+ A IS+++ ++
Sbjct: 4 AIFGTVGAGKSTISAEISKKLGYEI 28
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 30.5 bits (69), Expect = 0.32
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 29 IMGPSGAGKTTLL 41
+G +GKT L
Sbjct: 12 FVGLCDSGKTLLF 24
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 30.5 bits (69), Expect = 0.33
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G ++ + G L L GP G GKT+ + +++ I G
Sbjct: 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 30.2 bits (68), Expect = 0.34
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLE 62
G+ + + G +G GKTT A Q + G E
Sbjct: 30 GTTVLLTGGTGTGKTTFAA------------QFIYKGAE 56
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 30.6 bits (69), Expect = 0.34
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD 51
L+ + G + +GK+++ A I Q + +
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 30.6 bits (69), Expect = 0.37
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
+ L +S +L + GP G GKT+ + +++ + G
Sbjct: 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.2 bits (68), Expect = 0.40
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ I G + +GKTTL + + +
Sbjct: 23 IIGISGVTNSGKTTLAKNLQKHLPNCS 49
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.41
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 26 LLAIMGPSGAGKTTLL 41
+L+I+G S +GKTTL+
Sbjct: 4 ILSIVGTSDSGKTTLI 19
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 0.42
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILL 58
+ I E + I GP+G G TTL I + + + I+L
Sbjct: 35 NIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 30.0 bits (67), Expect = 0.46
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 28 AIMGPSGAGKTTLLACISQR 47
I G G+GKTT L +
Sbjct: 24 LIEGNIGSGKTTYLNHFEKY 43
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.2 bits (69), Expect = 0.48
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 28 AIMGPSGAGKTTLL 41
+ G SG GK++LL
Sbjct: 173 TMAGLSGVGKSSLL 186
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 29.9 bits (68), Expect = 0.48
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDV 52
+ I SG GK+TLL I D+
Sbjct: 74 IGIFAGSGVGKSTLLGMICNGASADI 99
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 30.2 bits (68), Expect = 0.49
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 27 LAIMGPSGAGKTTLLACI 44
L + G G GK+ LLA +
Sbjct: 155 LYLYGDMGIGKSYLLAAM 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 29.7 bits (66), Expect = 0.50
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 21 AESGSLLAIMGPSGAGKTTLLACISQRIQ 49
E + +MG SG+GKTT+ ++
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETG 54
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 30.1 bits (68), Expect = 0.50
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPSGAGKTTLLACISQRIQGD 51
G+ + L IA+ G++ + I G G GKTT + C++ + G
Sbjct: 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 30.0 bits (68), Expect = 0.50
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 9 GDTNYKESLSGIAESGSL--LAIMGPS-GAGKTTLLACISQRIQGDVDGQILLNG 60
KE+ I G + + + PS G GKTT+ + + D+ + +NG
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVNG 81
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.0 bits (67), Expect = 0.52
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 29 IMGPSGAGKTTLLACISQRIQ 49
+G +G+GKTTL + ++
Sbjct: 19 FVGTAGSGKTTLTGEFGRYLE 39
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 30.0 bits (68), Expect = 0.53
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 7 LFGDTNYKESLSGIAESGSLLAIMGPSGAGKTTLLACISQRI 48
L +Y L + ++ + G +G+GKTTL+ + Q I
Sbjct: 158 LKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.3 bits (65), Expect = 0.54
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 23 SGSLLAIMGPSGAGKTTLLACISQRI 48
+ ++ + G S AGK+ ++ C+ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 29.3 bits (66), Expect = 0.56
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 28 AIMGPSGAGKTTLL 41
I+G +G+GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.8 bits (68), Expect = 0.56
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 28 AIMGPSGAGKTTLL 41
G SG GK++LL
Sbjct: 177 VFAGQSGVGKSSLL 190
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 29.8 bits (68), Expect = 0.60
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 28 AIMGPSGAGKTTLL 41
+ GPSG GK+++L
Sbjct: 169 ILAGPSGVGKSSIL 182
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 0.63
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 26 LLAIMGPSGAGKTTLLACI 44
LLA SG GKTTLL +
Sbjct: 8 LLAFAAWSGTGKTTLLKKL 26
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.5 bits (67), Expect = 0.84
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 28 AIMGPSGAGKTTLL 41
G SG GK++LL
Sbjct: 219 IFAGQSGVGKSSLL 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 0.84
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
+ +MGP+ +GKT L + + + ++
Sbjct: 12 AIFLMGPTASGKTALAIELRKILPVEL 38
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.3 bits (65), Expect = 0.85
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
L+I G GK+T + +++
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTYPE 28
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 0.88
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
+ +MGP+ AGKT L ++ + ++
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCEL 33
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.8 bits (65), Expect = 0.93
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 28 AIMGPSGAGKTTLL 41
I+G +G+GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 29.2 bits (66), Expect = 0.93
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
++ I G +G GK+ L ++Q+ G+V
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGEV 30
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 29.2 bits (66), Expect = 0.93
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDV 52
+ + SG GK+ LL +++ + DV
Sbjct: 160 MGLFAGSGVGKSVLLGMMARYTRADV 185
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.1 bits (66), Expect = 1.00
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
L+ I+GP+ +GKT L ++++ G++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEI 35
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.9 bits (64), Expect = 1.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRI 48
G++ A++ P GAGK+ L ++ +I
Sbjct: 30 GTVGALVSPGGAGKSMLALQLAAQI 54
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
++I G AGK+T + + Q +
Sbjct: 27 ISIEGNIAAGKSTFVNILKQLCED 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.9 bits (64), Expect = 1.3
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQIL---LNGLEVEKNLMVKVSGFVPQH 78
+ ++ I G +G GKT ++ + ++ G+ +N ++ ++ +
Sbjct: 44 KPNNIF-IYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-DTPYRVLADLLESL 101
Query: 79 DLTVDTLTVHEHMTLMARLKMDRN 102
D+ V + +K R+
Sbjct: 102 DVKVPFTGLSIAELYRRLVKAVRD 125
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 28.6 bits (65), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
L+AI+GP+ GKT +++R+ G+V
Sbjct: 5 LVAIVGPTAVGKTKTSVMLAKRLNGEV 31
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein,
heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B*
3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B*
3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B*
3aee_B* ...
Length = 252
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 36 GKTTLLACISQRIQGDVDGQIL---LNGLEVEKNLMVKVSGFVPQH 78
G TL AC + I D+ L + V K+L+ +S F Q+
Sbjct: 79 GGNTL-ACTKK-IDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQY 122
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 1.3
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 23 SGSLLAIMGPSGAGKTTLL 41
++AI+G +G+GK+++
Sbjct: 24 EKGIVAIIGENGSGKSSIF 42
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.5 bits (63), Expect = 1.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQG 50
+ I G G GKT++ I+ + G
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDG 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.0 bits (65), Expect = 1.3
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 19 GIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEV 63
G+ +L + GP G GKT + ++ L+NG E+
Sbjct: 234 GVKPPRGIL-LYGPPGTGKTLIARAVANETGAFF---FLINGPEI 274
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.0 bits (65), Expect = 1.4
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTL---LACISQRIQGDVDGQIL 57
++ L + + I G +G GK+ L ++G G +
Sbjct: 137 QQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 28.8 bits (64), Expect = 1.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTLLACISQRIQ 49
L G E+ ++ + G G+GKT L ++ +Q
Sbjct: 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.5 bits (64), Expect = 1.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 29 IMGPSGAGKTTLLACISQRI 48
+ G +G+GKTT + I + I
Sbjct: 176 VCGGTGSGKTTYIKSIMEFI 195
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.4 bits (63), Expect = 1.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 29 IMGPSGAGKTTLLACISQRIQGD 51
+MG SG+GK+++ + I
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAF 30
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.1 bits (63), Expect = 1.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQ 49
L+A+ G G+GK+TL ++ +
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALS 47
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.1 bits (62), Expect = 1.7
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDT-L 85
+ + G G GKTTL ++ + I + L E+ L L D +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKY---INVGDLAREEQLYDGYDEEYDCPILDEDRVV 70
Query: 86 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL 129
++ + +D + R + +L+ +VL
Sbjct: 71 DELDNQMREGGVIVDYHGCDFFPERWFHIVF----VLRTDTNVL 110
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 28.3 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 22 ESGSLLAIMGPSGAGKTTLLACI 44
G + +GPSG GK+TLL I
Sbjct: 27 HEGEFVVFVGPSGCGKSTLLRMI 49
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.1 bits (62), Expect = 1.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 28 AIMGPSGAGKTTLL 41
I+G +G+GK++LL
Sbjct: 27 LIIGQNGSGKSSLL 40
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.4 bits (61), Expect = 2.1
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 129 LNVLSGGERKRVALAVQTIIVQSGFVPQHDLTVDTLTVHEHMTLMARL 176
L LSGGER + LA + + L +D T + +L
Sbjct: 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.1 bits (62), Expect = 2.2
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 24 GSLLAIMGPSGAGKTTLL 41
+ ++G GK++++
Sbjct: 30 APITLVLGLRRTGKSSII 47
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGDV 52
L I GP+ +GKT + I+Q V
Sbjct: 3 LHLIYGPTCSGKTDMAIQIAQETGWPV 29
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 28.2 bits (62), Expect = 2.3
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLLACISQRIQGDVDGQI 56
L ++G G GKT L + + + +
Sbjct: 34 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF 76
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 2.4
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 28 AIMGPSGAGKTTLL 41
I+ GAGK+
Sbjct: 39 TILAKPGAGKSFTA 52
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 2.5
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 29 IMGPSGAGKTTLLACI 44
+MG +GK+++ +
Sbjct: 25 LMGLRRSGKSSIQKVV 40
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.7 bits (61), Expect = 2.6
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 26 LLAIMGPSGAGKTTLLACISQRIQGD 51
A++ G +A + + +
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPVNVN 146
Score = 27.7 bits (61), Expect = 3.3
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 28 AIMGPSGAGKTTLLACISQRIQGDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV 87
++G G+GK+T+ + Q I + L N++ P +L T+
Sbjct: 28 ILVGSPGSGKSTIAEELCQIIN-----EKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTL 82
Query: 88 HEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSG 134
+ + ++ + V+ + L N +
Sbjct: 83 QPNK-VAEMIENQGLF--KDHVEDVNFQPVKYSALTSNNEECTAVVA 126
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 27.4 bits (62), Expect = 3.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 28 AIMGPSGAGKTTL 40
I GPS +GK+++
Sbjct: 6 TIDGPSASGKSSV 18
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 27 LAIMGPSGAGKTTLLACI 44
L +G G GKT L
Sbjct: 41 LTFVGSPGVGKTHLAVAT 58
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 27.4 bits (62), Expect = 3.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 28 AIMGPSGAGKTTL 40
I GPSGAGK TL
Sbjct: 9 TIDGPSGAGKGTL 21
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 27.0 bits (59), Expect = 3.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTL-LACISQ 46
+ + + I G + GK+ L LA I +
Sbjct: 10 NFLVIDKMGVLITGEANIGKSELSLALIDR 39
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 27.0 bits (61), Expect = 3.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 28 AIMGPSGAGKTTL 40
A+ GP+ AGK+T+
Sbjct: 7 ALDGPAAAGKSTI 19
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 27.0 bits (61), Expect = 3.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 28 AIMGPSGAGKTTL 40
AI GP+ +GK+T+
Sbjct: 20 AIDGPASSGKSTV 32
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.4 bits (60), Expect = 3.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 14 KESLSGIAESGSLLAIMGPSGAGKTTLL 41
++L I S +A+ G +G+GK++ +
Sbjct: 59 SDALKEIDSSVLNVAVTGETGSGKSSFI 86
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 17 LSGIAESGSLLAIMGPSGAGKTTL 40
L+G E+ ++ G G+GKT L
Sbjct: 100 LAGGIETRTMTEFFGEFGSGKTQL 123
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 27.0 bits (61), Expect = 3.8
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 28 AIMGPSGAGKTTL 40
A+ GP+G GK+++
Sbjct: 13 AVDGPAGTGKSSV 25
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.5 bits (61), Expect = 3.8
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDVDGQ 55
++G +G GKT + DG
Sbjct: 928 LVGKAGCGKTATWKTV-IDAMAIFDGH 953
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural
genomics, riken structu genomics/proteomics initiative,
RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP:
d.15.3.2 PDB: 2htm_E
Length = 64
Score = 25.2 bits (56), Expect = 3.9
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 187 RARTVDALLKELGLLKCRPADELNRQ 212
+T+ +L+E+G+ A LN +
Sbjct: 12 EGKTLKEVLEEMGVELKGVAVLLNEE 37
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.3 bits (61), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 125 KNSVLNVLSGGERKRVALA 143
++ L++LSGGE+ V LA
Sbjct: 213 RDQKLSLLSGGEKALVGLA 231
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 26.8 bits (60), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 21 AESGSLLAIMGPSGAGKTTL 40
E ++ + G GAGKTTL
Sbjct: 30 TEKAIMVYLNGDLGAGKTTL 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 27.1 bits (60), Expect = 4.8
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 18 SGIAESGSLLAIMGPSGAGKTT--LLACISQRIQGDVDGQILL 58
S + + G + GAGKT L +++ + + L+
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLV 42
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 26.8 bits (58), Expect = 5.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 29 IMGPSGAGKTTLLACISQRIQGDV 52
+ G SGAGKTT+ + QG++
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQGNI 60
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 26.7 bits (58), Expect = 5.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 24 GSLLAIMGPSGAGKTTLLACISQRIQGDVDG 54
+ + G +GAGK+T +A + D+
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 26.3 bits (58), Expect = 5.7
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 26 LLAIMGPSGAGKTTL 40
++ +G G+GK+T
Sbjct: 4 IILTIGCPGSGKSTW 18
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 26.6 bits (58), Expect = 5.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGDVD 53
+ + G G GK+T ++ G
Sbjct: 10 IYLDGVYGIGKSTTGRVMASAASGGSP 36
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 26.9 bits (59), Expect = 6.2
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 2 ETFHPLFGDTNYKESLSGIAE-------SGSLLAIMGPSGAGKTTLLACISQRIQGDV 52
+ L G N +E+ I E +G + + GP G GKT L I+Q + V
Sbjct: 34 QAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.4 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 27 LAIMGPSGAGKTTLLACISQRIQGD 51
L + GP+G GK T + + I G
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGP 63
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 26.1 bits (58), Expect = 7.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 125 KNSVLNVLSGGERKRVALA 143
+ +SGGE+ ALA
Sbjct: 58 DVKRIEAMSGGEKALTALA 76
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.6 bits (58), Expect = 7.7
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 26 LLAIMGPSGAGKTTLLACI 44
++ +MG GK+++ +
Sbjct: 1 MVLLMGVRRCGKSSICKVV 19
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target,
structural genomics, protei structure initiative, PSI;
1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Length = 290
Score = 26.2 bits (58), Expect = 7.8
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 143 AVQTIIVQSGFVPQHDLTVDTLTVHEH 169
+ + +IV+ G++ D+ H H
Sbjct: 263 SAKKLIVEYGYIMPSDVEEGGSHHHHH 289
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia
coli} SCOP: d.15.3.2 PDB: 1zud_2
Length = 66
Score = 24.4 bits (54), Expect = 7.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 183 HHVERARTVDALLKELGLLKCRPADELNRQ 212
+TV LL++L + A +N+Q
Sbjct: 10 MQCAAGQTVHELLEQLDQRQAGAALAINQQ 39
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 26.0 bits (58), Expect = 8.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 31 GPSGAGKTTLLACISQRIQGDVDGQIL 57
GP+G+GK+T +A + I I+
Sbjct: 32 GPTGSGKSTTIASMIDYINQTKSYHII 58
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.4 bits (58), Expect = 8.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 27 LAIMGPSGAGKTTLLACI 44
L + G +G GK+ LL +
Sbjct: 56 LLVNGATGTGKSVLLREL 73
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 25.7 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 11/40 (27%)
Query: 13 YKESLSGIAESGSLLA-----------IMGPSGAGKTTLL 41
+ SG+ GSL + ++G AGKTT+L
Sbjct: 7 HHHHSSGLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTIL 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 26.2 bits (57), Expect = 9.2
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 26 LLAIMGPSGAGKTTL 40
++ +G G+GK+T
Sbjct: 4 IILTIGCPGSGKSTW 18
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 25.8 bits (56), Expect = 9.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 18 SGIAESGSLLAIMGPSGAGKTTL-LACISQ 46
+ G + I G SG GK+ L + +
Sbjct: 28 VLVDIYGLGVLITGDSGVGKSETALELVQR 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.382
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,214,216
Number of extensions: 194286
Number of successful extensions: 980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 251
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)