BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8251
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C C ++F + L H +R H + P+ C C K K L H+R HTG++PY
Sbjct: 24 CPECGKSFSRSDHLAEH-QRTHTGEK----PYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 91 ICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQ 150
C CG F +ANL HQ HTG++ Y C CGK+FS+ + + H R HTG+ K +
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 151 KMSALSGTAFAVEYEI--------IQECLFAKNGGKAFSRKSFVTTHMRVHTGKLT 198
G +F+ E + ++ GK+FSR+ + H R HTGK T
Sbjct: 139 -----CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 3 PRGFRGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPW 62
P + F +L +H+R H G + C C ++F + + L R H + P+
Sbjct: 53 PECGKSFSDKKDLTRHQRTHTGEKPY-KCPECGKSFSQRANL-----RAHQRTHTGEKPY 106
Query: 63 CCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTV 122
C C K L H+R HTG++PY C CG F + NL HQ HTG++ Y C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE 166
Query: 123 CGKAFSRKSFVTTHMRVHTGKLT 145
CGK+FSR+ + H R HTGK T
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKKT 189
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
P+ C C K L H+R HTG++PY C CG F K +L +HQ HTG++ Y C
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 121 TVCGKAFSRKSFVTTHMRVHTGK---LTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGG 177
CGK+FS+++ + H R HTG+ + G+ S L+ ++ G
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 178 KAFSRKSFVTTHMRVHTGK 196
K+FSR+ + TH R HTG+
Sbjct: 141 KSFSREDNLHTHQRTHTGE 159
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Query: 83 IHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+ G++PY C CG F +L +HQ HTG++ Y C CGK+FS K +T H R HTG
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 143 KLTGKFGQKMSALSGTAFAVEYEII---QECLFAKNGGKAFSRKSFVTTHMRVHTGKLTG 199
+ K + + S A ++ ++ GK+FS+ + + H R HTG+
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 200 KFGQKISALSGIRTQHLQIESHQTTQP 226
K + + S H +H +P
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKP 161
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+Q ++R H++ H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+Q+ +R H++ H
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+ D+ RH++ H
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTH 72
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
P+ C C K +L H+R HTG++PY C CG F ++L +HQ HTG++ Y C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 121 TVCGKAFSRKSFVTTHMRVHTGK 143
CGK+FSR ++ H R H K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNK 86
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 25/110 (22%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTG 146
++PY C CG F +NL +HQ HTG++ Y C CGK+FS+ S + H R HTG+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 147 KFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTGK 196
K EC GK+FSR ++ H R H K
Sbjct: 62 K-------------------CPEC------GKSFSRSDHLSRHQRTHQNK 86
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C C ++F + S L +H +R H + P+ C C K L H+R HTG++PY
Sbjct: 7 CPECGKSFSQSSNLQKH-QRTHTGEK----PYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 91 ICDWCGVGFRSKANLLQHQPVHTGQR 116
C CG F +L +HQ H ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+Q D+++H++ H
Sbjct: 30 EKPYKCPECGKSFSQSSDLQKHQRTH 55
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+Q ++++H++ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH 27
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVC 123
C+ C K +L H IH+ RPY C +CG F K+++ +H +HTG++ + C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 124 GKAFSRKSFVTTHMRVHTG 142
GKAFS+ S + TH R HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 27 SFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTG 86
SFD C IC ++F + S L HL + S++ P+ C++C KR K + H IHTG
Sbjct: 1 SFD-CKICGKSFKRSSTLSTHL-----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++P+ C CG F +NL+ H HTG
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFG 149
+ C CG F+ + L H +H+ R Y C CGK F +KS + H +HTG+ K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK-- 59
Query: 150 QKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
Q C GKAFS+ S + TH R HTG
Sbjct: 60 -----------------CQVC------GKAFSQSSNLITHSRKHTG 82
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 310 RPYDCDVCGAKFTQVGDMRRH 330
RPY C CG +F Q DM++H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH 48
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C VCG F+Q ++ H +KH
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKH 80
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 57 SESSPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVH 112
SE P+ C + CNKR L +H R HTG++PY CD+ C F L +HQ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
TG + + C C + FSR + TH R HTG+
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYI 91
C + ++K S L H R+H + P+ C F C +R L H+R HTG +P+
Sbjct: 14 CNKRYFKLSHLQMH-SRKH----TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 92 CDWCGVGFRSKANLLQHQPVHTGQRKYNC--TVCGKAFSRKSFVTTHMRVH 140
C C F +L H HTG++ ++C C K F+R + H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 54 IPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHT 113
+P + C+FC + +L IHER HT +RPY CD C FR + +L H+ +H+
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 114 GQRKYNCTVCGKAFSRKSFVTTHMRVH 140
++ + C CGK F + + H +H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
++ +IC +CG F NLL H+ HT +R Y C +C KAF R+ + H +H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C C F K L+ H ER H R P+ C C+K + L H IH+ ++P+
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTHTDER----PYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 91 ICDWCGVGFRSKANLLQHQPVH 112
C CG GF L H+ +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDKP 345
+RPY CD+C F + +R HR H +K+KP
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIH------SKEKP 73
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+PY CD C FR K NL H+ VHTG++ Y C +CG F+R + + TH R+H+G+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
P+ C C K +L H+ +HTG++PY C+ CG F ANL H +H+G++
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H ++PY C++CGA+F + +++ H + H
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
C C+ +F L H + P+ C C + +L H RIH+G++P
Sbjct: 20 CDRCQASFRYKGNLA-----SHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
D+PY CD C A F G++ H+ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH 40
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R K +L H RIHTGQ+P+ C C F +A+L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+ T H ++H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F K NL H +HTGQ+ + C +C + FS+++ + H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
P+ CR C + + SL H R HTG++P+ CD CG F + +H +H Q+
Sbjct: 34 PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FS+K+ + TH+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FS+++ + H+R HTG+ G+K + L RT+H +I Q
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLH-TRTRHTKIHLRQ 88
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + RH K H
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCG 124
C K L H R HTG++PY CDW CG F L +H HTG R + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 125 KAFSRKSFVTTHMRVH 140
+AFSR + HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 90 YICDWCGVG--FRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
+ CD+ G G + ++L H HTG++ Y+C CG F+R +T H R HTG
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 23/73 (31%)
Query: 123 CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSR 182
CGK +++ S + H+R HTG E C + G K F+R
Sbjct: 13 CGKTYTKSSHLKAHLRTHTG----------------------EKPYHCDWDGCGWK-FAR 49
Query: 183 KSFVTTHMRVHTG 195
+T H R HTG
Sbjct: 50 SDELTRHYRKHTG 62
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQP---VHTGQRKYNC 120
C C+K+ ++K L +H R HTG++P+ C CG + K NLL+H+ ++ ++ + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 121 TVCGKAFSRKSFVTTHMRVHTGKLTGK 147
+VC + F R+ + HM HTG++ K
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYK 96
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCG 124
C K L H R HTG++PY CDW CG F L +H HTG R + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 125 KAFSRKSFVTTHMRVH 140
+AFSR + HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 90 YICDWCGVG--FRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
+ CD+ G G + ++L H HTG++ Y+C CG F+R +T H R HTG
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 23/73 (31%)
Query: 123 CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSR 182
CGK +++ S + H+R HTG E C + G K F+R
Sbjct: 14 CGKTYTKSSHLKAHLRTHTG----------------------EKPYHCDWDGCGWK-FAR 50
Query: 183 KSFVTTHMRVHTG 195
+T H R HTG
Sbjct: 51 SDELTRHYRKHTG 63
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
++PY C CG F + L+QHQ VHTG++ Y C CGKAFS+ S + H R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHT 113
P+ C C K L H+R+HTG++PY C CG F + L+ HQ +HT
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 25/80 (31%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAK 174
++ Y C CGKAFSR S + H RVHTG+ Y+ + EC
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKP------------------YKCL-EC---- 48
Query: 175 NGGKAFSRKSFVTTHMRVHT 194
GKAFS+ S + H R+HT
Sbjct: 49 --GKAFSQNSGLINHQRIHT 66
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAFSR S + H RVHTG+
Sbjct: 21 GKAFSRSSILVQHQRVHTGE 40
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R K +L H RIHTGQ+P+ C C F L QH HTG++ +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+ H ++H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F K NL H +HTGQ+ + C +C + FS+ + + H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
P+ CR C + L H R HTG++P+ CD CG F + +H +H Q+
Sbjct: 34 PFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 27/84 (32%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FS+K+ + TH+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK 196
+ + FS+ + + H+R HTG+
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGE 60
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + RH K H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R SL H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F +L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F + L RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 12 CDRRFSQSGSLTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 94 WCGVGFRSKANLLQHQPVHTGQR 116
CG F +H +H Q+
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 27/84 (32%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FS+ +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK 196
+ + FSR +TTH+R HTG+
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGE 60
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 294 NDKLLSYLEFCDHHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+D L +++ H ++P+ CD+CG KF + + +RH K H
Sbjct: 47 SDHLTTHIR--THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F A+L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F + ++L RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 12 CDRRFSRSADLTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 94 WCGVGFRSKANLLQHQPVHTGQR 116
CG F +H +H Q+
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FSR + +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FSR +TTH+R HTG+ G+K A S R +H +I Q
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHLRQ 88
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R +L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F +NL +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F S L RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 12 CDRRFSDSSNLTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 94 WCGVGFRSKANLLQHQPVHTGQR 116
CG F +H +H Q+
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FS S +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FSR +TTH+R HTG+ G+K A S R +H +I Q
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHLRQ 88
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F A L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F + +EL RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 12 CDRRFSRSAELTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 94 WCGVGFRSKANLLQHQPVHTGQR 116
CG F +H +H Q+
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FSR + +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FSR +TTH+R HTG+ G+K A S R +H +I Q
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHLRQ 88
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F + EL RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 12 CDRRFSRSDELTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 94 WCGVGFRSKANLLQHQPVHTGQR 116
CG F +H +H Q+
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FSR +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FSR +TTH+R HTG+ G+K A S R +H +I Q
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHLRQ 88
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C F + EL RH+ R H + P+ CR C + L H R HTG++P+ CD
Sbjct: 11 CDRRFSRSDELTRHI-RIH----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 94 WCGVGFRSKANLLQHQPVHTGQ 115
CG F +H +H Q
Sbjct: 66 ICGRKFARSDERKRHTKIHLRQ 87
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FSR +T H+R+HTG Q+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTG-------------------------QKPFQ 35
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQIESHQ 222
+ + FSR +TTH+R HTG+ G+K A S R +H +I Q
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKIHLRQ 87
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 59 EKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C++R L H RIHTGQ+P+ C C F +L H HTG++ +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 119 NCTVCGKAFSRKSFVTTHMRVH 140
C +CG+ F+R H ++H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 87 QRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RPY C + C F L +H +HTGQ+ + C +C + FSR +TTH+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 31/109 (28%)
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLF 172
+R Y C V C + FSR +T H+R+HTG Q+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-------------------------QKPFQ 36
Query: 173 AKNGGKAFSRKSFVTTHMRVHTGK---LTGKFGQKISALSGIRTQHLQI 218
+ + FSR +TTH+R HTG+ G+K A S R +H +I
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-ARSDERKRHTKI 84
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ CD+CG KF + + +RH K H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%)
Query: 58 ESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK 117
S P C C K K L H R HTG +PY C C ++L +H +H+ +R
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTG 142
+ C +C A S +T H+R HTG
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 89 PYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKF 148
P+ C+ CG F K L H HTG + Y C C A + S + H+R+H+ + K
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK- 66
Query: 149 GQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
Q C +A S +T H+R HTG
Sbjct: 67 ------------------CQICPYASR------NSSQLTVHLRSHTG 89
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 177 GKAFSRKSFVTTHMRVHTG--KLTGKFGQKISALSGIRTQHLQIESHQ 222
GK FSRK + THMR HTG K +A S +HL+I S +
Sbjct: 15 GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+R Y CD CG F ++L +H+ HTG++ Y C CGKAF ++S + H RVHTG
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
C C K L H R HTG++PY CD CG F +++L+ H VHTG
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 25/81 (30%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAK 174
+R+Y C CGK+FS S ++ H R HTG+ K EC
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK-------------------CDEC---- 52
Query: 175 NGGKAFSRKSFVTTHMRVHTG 195
GKAF ++S + H RVHTG
Sbjct: 53 --GKAFIQRSHLIGHHRVHTG 71
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
R Y CD CG F+ D+ +HR+ H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 30 NCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
C C ++F S+L +H R H + P+ C C K + + L H R+HTG P
Sbjct: 20 KCDECGKSFSHSSDLSKH-RRTHTGEK----PYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWC----CRFCNKRMMTKLSLGIHERIHTGQRP 89
C TF ELV H+ EH +++ C C K K L H R+HTG++P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 90 YICDWCGVG--FRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLT 145
+ C + G G F NL H+ HTG++ + C C + F+ S HM VHT +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 146 G 146
G
Sbjct: 151 G 151
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 34/146 (23%)
Query: 65 RFCNKRMMTKLSLGIHERI-HTG---QRPYICDW--C---GVGFRSKANLLQHQPVHTGQ 115
+ C++ T L H + H G Q ++C W C G F++K L+ H VHTG+
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 116 RKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFA 173
+ + C CGK F+R + H R HTG+ F E+E
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGE--------------KPFKCEFEGCD----- 129
Query: 174 KNGGKAFSRKSFVTTHMRVHTGKLTG 199
+ F+ S HM VHT +G
Sbjct: 130 ----RRFANSSDRKKHMHVHTSDKSG 151
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 7 RGFRQVINLLKH-RREHGGNLSFDNCHIC--------KETFYKHSELVRHLEREHNIPRS 57
R F + L+ H EH G +N H+C ++F +LV H+ R H +
Sbjct: 33 RTFSTMHELVTHVTMEHVGGPEQNN-HVCYWEECPREGKSFKAKYKLVNHI-RVH----T 86
Query: 58 ESSPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHT 113
P+ C F C K +L IH+R HTG++P+ C++ C F + ++ +H VHT
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 114 GQR 116
+
Sbjct: 147 SDK 149
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 57 SESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQ- 115
S SS C C K L H+ H+G++PY C CG+ F+ K + H H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 116 -RKYNCTVCGKAFSRKSFVTTHMR-VHTGKLTG 146
+ Y C CGK FSR + H++ VH+G +G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKL 144
+G C+ CG FR +L +H+ H+G++ Y+C VCG F RK ++ H+R H G +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 145 TGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMR-VHTGKLTG 199
+ I Q C GK FSR + H++ VH+G +G
Sbjct: 63 GKPY-----------------ICQSC------GKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQ--R 88
C IC + F V HL R H + S P+ C C R K + H R H G +
Sbjct: 10 CEICGKIFRD----VYHLNR-HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 89 PYICDWCGVGFRSKANLLQH-QPVHTG 114
PYIC CG GF +L H + VH+G
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKHDENGG 339
H ++PY C VCG +F + M H + HD + G
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFR--SKANLLQHQPVHTGQRKYNCTVCG 124
C K L H R HTG++PY C W G +R L +H HTG + + C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 125 KAFSRKSFVTTHMRVH 140
++FSR + HM+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 87 QRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
+R + CD+ C + ++L H HTG++ Y CT C F+R +T H R HTG
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHN 53
F + L +H R+H G F C +C +F + L H++R N
Sbjct: 57 FARSDELTRHYRKHTGAKPF-QCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 55 PRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
PR+ + P + C K ++ H H G R ++C CG F + L +HQ VHTG
Sbjct: 3 PRTIACPH--KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
++ + CT CGK FS + TH+R+HTG
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRF-- 66
FR + KH HG + C C + F + S+L RH + + P+ C F
Sbjct: 17 FRDNSAMRKHLHTHGPRVHV--CAECGKAFVESSKLKRH-----QLVHTGEKPFQCTFEG 69
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQPVHT 113
C KR +L H RIHTG RPY+C D C F NL H H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 95 CGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSA 154
C FR + + +H H G R + C CGKAF S + H VHTG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG------------ 59
Query: 155 LSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E +C F + GK FS + TH+R+HTG
Sbjct: 60 ----------EKPFQCTF-EGCGKRFSLDFNLRTHVRIHTG 89
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 62 WCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+ C C + + SL H IH+ ++ Y C +C F +H+ HTG+R+Y C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 122 VCGKAFSRKSFVTTHMR-VHTGKLTG 146
CGK+F F+++H++ VH+ +G
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSG 108
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 68 NKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAF 127
NKRM K +E I G+ YIC C + +L +H +H+ ++KY C C K F
Sbjct: 2 NKRMKVKHD-DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Query: 128 SRKSFVTTHMRVHTGK 143
+ T H HTG+
Sbjct: 61 PLAEYRTKHEIHHTGE 76
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+RP+ C++CG +R + L +H+ H G R +C CGK F +S V H++VH K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
P+ C FC K L H R H G RP C CG FR ++ + +H VH +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKA 126
C K K H +H G RPY C CG F+ K +L+ H +HTG + Y C +C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 127 FS-RKSF 132
F R SF
Sbjct: 75 FMWRDSF 81
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G + Y C CG F K+ +H +H G R Y C VCGK F K + HM++HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C ++F S+ RH+ + P+ C C K+ K L H +IHTG +PY C+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGL-----RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 94 WCGVGFRSKANLLQH 108
C F + + +H
Sbjct: 70 ICAKRFMWRDSFHRH 84
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 88 RPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
RPY C + C F L +H +HTGQ+ + C +C + FSR +TTH+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 104 NLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFA 161
NLL + V R Y C V C + FSR +T H+R+HTG
Sbjct: 8 NLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG------------------- 46
Query: 162 VEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHT 194
Q+ + + FSR +TTH+R HT
Sbjct: 47 ------QKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 81 ERIHTGQRPYICDWCGVG-----FRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFV 133
E IH ++ ++C W G F+++ L+ H HTG++ + CT C K++SR +
Sbjct: 26 EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENL 85
Query: 134 TTHMRVHTGK 143
TH+R HTG+
Sbjct: 86 KTHLRSHTGE 95
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRF--CNKRM---MTKLSLGIHERIHTGQR 88
C + F +LV H+ EH E + C + C++ + + L +H R HTG++
Sbjct: 9 CSQEFDSQEQLVHHINSEH--IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 89 PYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNC--TVCGKAFSRKSFVTTHM-RVHTGK 143
P+ C + C + NL H HTG++ Y C C KAFS S H R H+ +
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 44 LVRHLEREHNIPRSESSPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGF 99
LV H+ R + P C F C K +L H R HTG++PY+C + C F
Sbjct: 55 LVVHMRRH-----TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
Query: 100 RSKANLLQHQP-VHTGQRKYNCTV--CGKAFSRKSFVTTHMRV 139
+ ++ +HQ H+ ++ Y C + C K ++ S + H++
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 31/112 (27%)
Query: 93 DWCGVGFRSKANLLQH---QPVHTGQRKYNCTVCG-----KAFSRKSFVTTHMRVHTGKL 144
D C F S+ L+ H + +H ++++ C G + F + + HMR HTG
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG-- 64
Query: 145 TGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTGK 196
E +C F + K++SR + TH+R HTG+
Sbjct: 65 --------------------EKPHKCTF-EGCRKSYSRLENLKTHLRSHTGE 95
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+RPYIC CG F ++NL++HQ +HTG++
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+R Y CTVCGKAF+ +S + H ++HTG+
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
+RPY C VCG FT ++ +H+K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + +L H++IHTG++P
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHM-RVHTGKL 144
++C+ C F + +L +H HT ++ Y C +C +AF+R+ + H ++H+G L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 62 WCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQH-QPVHTG 114
+ C C + + L H R HT ++PY C C F + L++H Q +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTG-KLTG 146
+G++ Y C CGK FS KS++ H R+HTG KL+G
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSG 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+G++PY C+ CG F SK+ L+ HQ +HTG++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C K +K L +H+RIHTG++
Sbjct: 10 PYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 177 GKAFSRKSFVTTHMRVHTG-KLTG 199
GK FS KS++ H R+HTG KL+G
Sbjct: 17 GKDFSSKSYLIVHQRIHTGEKLSG 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMR 138
YIC+ CG+ + + L +H HT R Y+CT C +F K +T HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 62 WCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQH 108
+ C C R L H R HT RPY C +C F++K NL +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTV-- 122
C L H HTG++P+ C + C GF S +L +H HTG++ + C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 123 CGKAFSRKSFVTTHM-RVHTGKL---------TGKFGQKMSALSGTAFAVEYEIIQECLF 172
C F+ K+ + H R H K+ GK +K + L F+ ++ EC
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 173 AKNGGKAFSRKSFVTTHMRVHTG 195
+ K FS S + H +VH G
Sbjct: 140 -EGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY+CD+CG F A L++HQ +HTG++
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF + + H R+HTG+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C +C K L H+RIHTG++P
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY CD CG F ++ RH++ H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG G+ SK NL HQ VHTG+R
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K +K +L +H+++HTG+RP
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK ++ K + H +VHTG+
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ Y CT CGKAF RKS TH R+HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+G++PY+C CG F K++ + H+ +HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQ 87
P+ C C K + K HERIHTG+
Sbjct: 10 PYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF RKS TH R+HTG+
Sbjct: 17 GKAFIRKSHFITHERIHTGE 36
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 59 SSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVH 112
SS C +C K + L IH R HTG++PY C++C K +L H H
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 92 CDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVH 140
C +CG FRS L H HTG++ Y C C A ++K+ + H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 114 GQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
G C+ CGK F ++ H+R HTG+
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE 30
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C+ CGKAFS KS++ HMR H+G+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F SK+ L+ H H+G++
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAFS KS++ HMR H+G+
Sbjct: 19 GKAFSSKSYLIIHMRTHSGE 38
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K +K L IH R H+G++P
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+R Y C+ CGKAF+RKS + H R+HTG+
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+R Y C CG F K+ L+ HQ +HTG++
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF+RKS + H R+HTG+
Sbjct: 19 GKAFARKSTLIMHQRIHTGE 38
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRP 89
C C K K +L +H+RIHTG++P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G + Y C+ CGKAF KS++ HMR HTG+
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+G +PY C CG FRSK+ L+ H HTG++
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K +K L IH R HTG++P
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF KS++ HMR HTG+
Sbjct: 17 GKAFRSKSYLIIHMRTHTGE 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F KANL QHQ +HTG++
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF++K+ +T H R+HTG+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGE 38
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K +L H+RIHTG++P
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF++K+ +T H R+HTG+
Sbjct: 19 GKAFAQKANLTQHQRIHTGE 38
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPV 111
P+ CR C + L H R HTG++P+ CD CG F +H+ +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGK 147
+P+ C C F +L H HTG++ + C +CG+ F+R H + +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ--HILPI 59
Query: 148 FGQKMSALSGTAFAVEYEI 166
K+ L + +E E+
Sbjct: 60 LEDKVEELLSKNYHLENEV 78
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHR 331
H ++P+ CD+CG KF + + +RHR
Sbjct: 26 HTGEKPFACDICGRKFARSDERKRHR 51
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
Q+P+ C CG FR+K NL+ HQ +HTG++
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTG 146
Q+ + CT CGK+F K + TH R+HTG+ +G
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C K K +L H+RIHTG++
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK 117
T ++PY C CG FR+++NL HQ +HTG+++
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
T ++ Y C CGKAF +S +TTH +HTG+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C+VCGKAFS + ++ H R+H+GK
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGK 38
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + SL +H+RIH+G++P
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F + +L HQ +H+G++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG FR+ +NL HQ +HTG++
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF S +TTH +HTG+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAFS +S +TTH +HTGK
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F +++L HQ +HTG++
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + SL H+ IHTG++P
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAFS +S +TTH +HTGK
Sbjct: 19 GKAFSVRSSLTTHQAIHTGK 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PYIC CG F ++NL++HQ +HT Q+
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHT 141
++ Y C CGKAF+ +S + H ++HT
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHT 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+GQ+PY+C+ CG F K+ L+ H+ +HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+GQ+ Y C CGKAF KS + H R+HTG+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQ 87
P+ C C K K L IHERIHTG+
Sbjct: 10 PYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+GQR Y C CGK+F +K +T H R+HTG
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
+GQR Y C CG FR K +L H+ +HTG
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRP 89
C+ C K K SL +HERIHTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ Y CT CGKAF KS + H R HTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+G++PY C CG F K+ L+ HQ HTG+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C VCGK FS+ S + TH RVHTG+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++ Y CD CG F ++L HQ VHTG++
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++ Y CDVCG +F+Q ++ H++ H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GK FS+ S + TH RVHTG+
Sbjct: 19 GKEFSQSSHLQTHQRVHTGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G+ Y C+ CGKAF+RK + +H R H G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+G+ PY C CG F K L+ HQ H G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK FS+KS ++ H R HTG+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F K+ L HQ HTG++
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K L H+R HTG++P
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GK FS+KS ++ H R HTG+
Sbjct: 19 GKTFSQKSILSAHQRTHTGE 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+ P+IC CG F K NL+ HQ +HTG+R
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 60 SPWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
+P+ C C K K +L IH++IHTG+RP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ + C+ CGK F+ K+ + H ++HTG+
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGE 38
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
+G++PY+C CG F K+ L+ HQ +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C+ CGKAF+ KS + H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQ-----HQPVHTGQRKYNCTVCGKAFSRK 130
S G R HTG++PY C C FR K L H P + C+ CGK F+R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV-PAAFVCSKCGKTFTRR 60
Query: 131 SFVTTHM 137
+ + H
Sbjct: 61 NTMARHA 67
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C CGKAFS+K + H+RVHTG
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++PY CD CG F K +L+ H VHTG
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
++PY CD CG F+Q G + H + H +G S+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K SL +H R+HTG P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS+K + H+RVHTG
Sbjct: 18 GKAFSQKGSLIVHIRVHTG 36
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG FR ++L+QH VH+G+R
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C VCGKAF S + H VH+G+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ + CT CGKAF+RKS ++ H ++HTG+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGE 38
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRP 89
C C K K +L +H++IHTG++P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQR 116
+ C CG F K+ L HQ +HTG++
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF+RKS ++ H ++HTG+
Sbjct: 19 GKAFTRKSTLSMHQKIHTGE 38
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ Y C CGKAF++ S ++ H RVHTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+G++PY+C CG F + L H+ VHTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQ 87
P+ C+ C K L IH R+HTG+
Sbjct: 10 PYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 156 SGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTGK 196
SG++ Y + QEC GKAF++ S ++ H RVHTG+
Sbjct: 3 SGSSGEKPY-VCQEC------GKAFTQSSCLSIHRRVHTGE 36
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGG 339
++PY C CG FTQ + HR+ H G
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 74 KLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQH 108
K +L IHERIH RP+ C++C + +NL +H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTG 142
R Y+C+VCGK FS K + TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C VCG +F+ M H + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTG 114
RPY C CG F K + H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+PY+C+ CG FRSK+ L+ H HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C CGKAF KS++ H R HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F ++NL HQ +HTG++
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF+ +S + TH ++HTG+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGE 38
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + +L H++IHTG++P
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C++CGK+F++KS + H ++HTG+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F K+ L HQ +HTG++
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K L +H++IHTG++P
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C +CG FT+ + H++ H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+++Y C CGK FSR S ++ H ++HTG+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++ Y C+ CG F + L QHQ +HTG++
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+RP+ C+ CG F A+L+QHQ +HTG++
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+R + C CGK+F + + + H R+HTG+
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
++PY C+ CGA+F QV +R H H +G S+
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++PY C+ CG F A+L H +HTG
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG FR++++L HQ H+G++
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + SL IH+ H+G++P
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF +S + H H+G+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGE 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F +L+QHQ VHTG++
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAFS+ + + H RVHTG+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C+ C K L H+R+HTG++P
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C CG F+Q + +H++ H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ YNC CGKAF S + H R+HTG+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F + L +HQ +HTG++
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + L H+RIHTG++P
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+R Y C+ CGKAF +KS ++ H R+H G+
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGE 38
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRP 89
C C K + K +L +H+RIH G++P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+R Y C CG F K+ L HQ +H G++
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAFS+ S + H R+HTG+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F + L +HQ +HTG++
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F+Q + RH++ H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K L H+RIHTG++P
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQPVHTGQRKYNCTV-- 122
C L H HTG++P+ C + C GF S +L +H HTG++ + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 123 CGKAFSRKSFVTTHM 137
C F+ K+ + H
Sbjct: 71 CDLRFTTKANMKKHF 85
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGK+FS++ + H R+HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C+ C K + SL +HER+HTG P
Sbjct: 10 PYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
+G++PY C CG F + +L H+ +HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
++PY C CG F+Q G + H + H +G S+
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C CGKAFS+ S + H RVHTG+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+PY C+ CG F + L +HQ VHTG++
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F+Q + RH++ H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K L H+R+HTG++P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ + C CGKAFS KS + H R+HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+G++ + C+ CG F K+ L+ HQ +HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 165 EIIQECLFAKNGGKAFSRKSFVTTHMRVHTGK 196
E + EC N GKAFS KS + H R+HTG+
Sbjct: 8 EKLHEC---NNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F++ S +T H R+HTG+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F ++L H +HTG++
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+G++PY C+ CG F K+ L+ H+ VHTG +
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y+C CGKAF+ KS + H VHTG
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K L +H+ +HTG +P
Sbjct: 10 PYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C C F KA+L QHQ HTG++
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C VC KAF++K+ + H + HTG+
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C VC FTQ + +H+K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C+ C+K K L H++ HTG++P
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
QR Y C CGKAF KS + H R HTG+
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGE 38
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
QRPY C CG F++K++L+ H+ HTG++
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K TK SL H R HTG++P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRH-RKKHDEN 337
H ++PY+C +C A+FTQ G M+ H +KH EN
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 42
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQH--QPVHTGQRKYNCTVCGKAFSRKSFV 133
S G R H+G++PY C C F + H Q K++C C +RKS +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 134 TTHMR 138
H+R
Sbjct: 62 GVHLR 66
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PYIC+ CG F K++L +H+ +HTG++
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK+F +KS + H R+HTG+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + K L H RIHTG++P
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F Q + RHR+ H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
++PY C+ C F +K+NL+ HQ HTG+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C C KAF+ KS + H R HTG+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQ 87
P+ C C K TK +L +H+R HTG+
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C+ CGK+F +KS + H R+HTG+
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + K L +H+RIHTG+ P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
++PY C CG F K+ L HQ +HTG+
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK+FS S + TH R+HTG+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGE 38
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K L H+RIHTG++P
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C CG F + L HQ +HTG++
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C+ CGKAF+RKS + H + HTG+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F K+ L HQ HTG+R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C K K L IH++ HTG+R
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+G++P +C+ CG FR + L +HQ +H+G++
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ C CGK F + S ++ H R+H+G+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGE 36
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C VC KAFS + +T H RVH+G+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY CD C F A+L QHQ VH+G++
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K SL H+R+H+G++P
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+CDVC F+ + +H++ H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C+ CGKAF R + + H R+HTG
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F +L +H+ +HTG R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG G+ + NL HQ VH G++
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGKLT 145
++ Y C CGK ++R+ + H RVH G+ T
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C K +L+L +H+R+H G++
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHT 141
++ Y+C VCGKAF + + H+RVHT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHT 113
++PY C+ CG F A+L QH VHT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDE 336
++PY C+VCG F + +H + H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFG 149
+G++ Y+C VCG F RK ++ H+R H G + GK G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV-GKSG 41
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDKPG 346
++PY C VCG +F + M H + HD + G + G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
+G++PY C CG+ F+ K + H H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGKAF S T H R+HTG+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F ++ QHQ +HTGQR
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K S H+R+HTGQRP
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 90 YICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT--VCGKAFSRKSFVTTHMRVHTGKLT 145
Y+C + CG F+ L HQ HT Q Y C C K FS S + H +VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 146 GKFGQKMSALSGTAFAVEYEIIQEC 170
K + G + + + + EC
Sbjct: 62 KK--DDSCSFVGKTWTLYLKHVAEC 84
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 62 WCCRF--CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQPVHTG--- 114
+ C F C K L +H+ HT Q PY C + C F + L +H+ VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 115 QRKYNCTVCGKAFS 128
++ +C+ GK ++
Sbjct: 62 KKDDSCSFVGKTWT 75
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F S+++ H R+HTG+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG FR + L +HQ +HTG++
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K L H+RIHTG++P
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+PY+C+ CG F ++L HQ +HTG++
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C CGKAFS S +TTH +HTG+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGE 38
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K SL H+ IHTG++P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 90 YICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT--VCGKAFSRKSFVTTHMRVHTGKLT 145
Y+C + CG F+ L HQ HT Q Y C C K FS S + H +VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 146 GKFGQKMSALSGTAFAVEYEIIQEC 170
K + G + + + + EC
Sbjct: 62 KK--DDSCSFVGKTWTLYLKHVAEC 84
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQPVHTG---QRKYNCT 121
C K L +H+ HT Q PY C + C F + L +H+ VH G ++ +C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 122 VCGKAFS 128
GK ++
Sbjct: 69 FVGKTWT 75
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG FR + LL+HQ VH+G++
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ YNC CGK+F S + H RVH+G+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGE 38
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ YNC CGK+FSR + H R+H+G+
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGE 38
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C CGK F++ S + H R+HTG
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++PY C+ CG F ++L HQ +HTG
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG FTQ + H++ H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K L H+RIHTG +P
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C CGKAFSRK + +H R H G+
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+ PY C CG F K L+ HQ H G++
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK FSR+S + H ++HTG+
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGE 38
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C CG GF ++ L H +HTG++
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + +L +H ++HTG++P
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
T ++ Y C+ CGKAF R S + H R H+G+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
T ++PY C CG F + L+ HQ H+G+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHT 113
+G+RP++C C F +KAN +H VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLT 145
+G+R + C +C AF+ K+ H++VHT L+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG FR ++L +HQ +HTG++
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F R S + H +HTG+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG GF + +L H VHTG++
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F + + TH VHTG+
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGE 38
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C C F +K+NL+ HQ HTG++
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K TK +L +H+R HTG++P
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C+ C KAF+ KS + H R HTG+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGE 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHT 141
+R + C CGK F R+S + H+R+H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHT 113
+RP+ C+ CG GF +++L H +H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
T ++P+ CD C FR ++ L H+ +HTG++
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
T ++ + C C K+F ++S + +H +HTG+
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C+K + +L H IHTG++P
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C CGK F++ S + H RVHTG
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG FTQ + RHR+ H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F ++L +H+ VHTG +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG G++ + +L HQ VHTG++
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG-KLTG 146
++ Y C CGK + R+ + H RVHTG KL+G
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSG 42
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C K +L L H+R+HTG++
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C+K SL +H+RIHTG++P
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY CD C FR ++L HQ +HTG++
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C VC K+F S +T H R+HTG+
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C CG + + +L QHQ VHTG++
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK+++++ +T H RVHTG+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K ++ L H+R+HTG++P
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C CGKAF KS + H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++PY C+ CG F K+ L+ H+ H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C CGK FSRK + +H + H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+ PY C CG F K L+ HQ H+GQ
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGKAF + + +H+R+HTG+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGE 38
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C CG FR +L H +HTG++
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C+ C K + L H RIHTG++P
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
+G++ + C+ C KAFS KS++ H + H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+G++P+ C C F SK+ LL HQ H ++
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTGK 143
YNC CGKAF+R +T H ++HT K
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 312 YDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
Y+C+ CG FT++ + RH+K H G +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPS 42
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK F++ S + +H RVHTG+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C+ CG F ++L HQ VHTG++
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C KR L H+R+HTG++P
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C+ CG +FTQ + H++ H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVC 123
CR CN ++ + L G HER+ + +C +C + F S L Q +K C C
Sbjct: 19 CRLCNAKLSSLLEQGSHERL--CRNAAVCPYCSLRFFS-PELKQEHESKCEYKKLTCLEC 75
Query: 124 GKAF 127
+ F
Sbjct: 76 MRTF 79
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F ++L++H+ +HTG++
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F++ S + H +HTG+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG FTQ + RHR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ ++C CGKAFS + H R+HTG+
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGE 38
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K + L H RIHTG++P
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C CG F L QH+ +HTG++
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVH 112
C K L H R HTG++P+ C W C F L +H+ H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 88 RPYICD--WCGVGFRSKANLLQHQPVHTGQRKYNCT--VCGKAFSRKSFVTTHMRVH 140
R +IC CG + ++L H HTG++ ++C+ C + F+R ++ H R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C CG F K+ L HQ HTG+R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C+ CGK+F+ KS + H + HTG+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK F++ S + +H RVHTG+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGE 38
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C KR L H+R+HTG++P
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C+ CG F + L HQ VHTG++
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C+ CG +FTQ + H++ H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
++PY C++CG +F + ++ H + H +G S+
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
++ Y C +CG F + +H+R+HTG
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTG 114
++PY C+ CG FR L H +HTG
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 88 RPYICDWCGVGFRSKANLLQH-QPVHTGQRKYNCTV 122
+PYIC CG GF +L H + VHT +R + C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F ++L +H+ +HTG++
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F++ S + H +HTG+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG FTQ + RHR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C CGK+FS S + H R+HTG+
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P CR C K L +H+RIHTG+ P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
++P+ C CG F + L+ HQ +HTG+
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 119 NCTVCGKAFSRKSFVTTHMRVHTGK 143
C +CGKAF++ S + H+R HTG+
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C+ CG F ++L +H+ +HTG++
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ Y C CGK F++ S + H +HTG+
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + RHR H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHT---GQRKYNCTVCGKAFSRKSFVTTH 136
+G C+ CG R KA+L HQ H ++ C CGK F + V H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+ + C CG GF K++L QHQ +HTG++
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ + C CG+ F+ KS + H R+HTG+
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGE 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+ Y C+ C K FS KS + H R HTG
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C K K L +H+R HTG +P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 85 TGQRPYICDWCGVG--FRSKANLLQHQPV-HTGQRKYNCT--VCGKAFSRKSFVTTHMRV 139
+G CD+ G G F ++ L H+ H Q+ ++C CGK+F+ K + HM++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 140 HT 141
H+
Sbjct: 63 HS 64
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRP 89
C C K SL +H+RIHTG++P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ C C K F++ S +T H R+HTG+
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGE 38
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHT 113
+ ++CD CG F+SK L H+ +HT
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHT 113
+G++PY C C F L+QHQ +HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ C+ CG GF + + HQ H+G++
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 88 RPYICDWCGVGFRSKANLLQH 108
RPY C +C F++K NL +H
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKH 21
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++P+ CD CG F ++ L +H VHT ++
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
++ + C +CGK+F +S + H VHT +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
T + P+ C+ CG F A+L +HQ +H G+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
+ PY C CG FTQ G + H++ ++G S+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 60 SPWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
+P+ C C K KL L +H+R+HT ++P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ + C+ C K FS S + H R+HTG+
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVH 140
+R Y C CGK F R S + H++ H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ C C + FSR + TH R HTG+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 88 RPYICDW--CGVGFRSKANLLQHQPVHTGQR 116
RP++C W CG F L +H+ HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2WD6|A Chain A, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
pdb|2WD6|B Chain B, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
Length = 349
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 369 VIQHFSLVQMNFNSPSELILLTCSEPTIF---------TNFNVKT-------QILNLTST 412
V+ ++L + FN +++ + S+PT+ TN NVK Q++NLT
Sbjct: 135 VVYTYTLKETGFNDGTKMTMFASSDPTVTAWYNDYFTSTNINVKVKFYDEEGQLMNLTGG 194
Query: 413 FHLFHPLTKYNLS 425
F L + N S
Sbjct: 195 LVNFSSLNRGNGS 207
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 115 QRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+R + C+ CGK F + S H R+HTG+
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGE 38
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+R + C CG F +N +QH+ +HTG++
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHDEN 337
+PY CD CG F+ RH + HD +
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
++PY C C F +L QH+ VHTG+R
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+C C F Q+G + +H++ H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 309 DRPYDCD--VCGAKFTQVGDMRRHRKKHDENG 338
DRPY CD C F + D+ RH+K H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 120 CTVCGKAFSRKSFVTTHMRVHTGK 143
C VC +AF+R+ ++ H R HT +
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 86 GQRPYICDWCGVGFRSKANLLQHQPVHTGQRK---YNCTVCGKAFSRKSFVTTHMRV 139
G+ Y C C + +N +H V + +R Y C C K F+RK +T H+++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHY-VTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 95 CGVGFRSKANLLQHQPV-HTGQRKYNCTVC--------GKAFSRKSFVTTHMRVHTGKLT 145
C F + L+ H + H G + N VC GK+F K + H+RVHTG+ +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS 90
Query: 146 G 146
G
Sbjct: 91 G 91
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHD 335
+PY C+ CG +F Q + H + HD
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,849,329
Number of Sequences: 62578
Number of extensions: 505359
Number of successful extensions: 2286
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 889
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)