RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8251
(434 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 120 bits (303), Expect = 2e-32
Identities = 60/189 (31%), Positives = 83/189 (43%), Gaps = 35/189 (18%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
+ + G + C C ++F + L H +R H + P+ C C
Sbjct: 3 EFGSSSSVAQAALEPGEKPYA-CPECGKSFSRSDHLAEH-QRTH----TGEKPYKCPECG 56
Query: 69 KRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFS 128
K K L H+R HTG++PY C CG F +ANL HQ HTG++ Y C CGK+FS
Sbjct: 57 KSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS 116
Query: 129 RKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFV 186
+ + + H R HTG E Y+ EC GK+FSR+ +
Sbjct: 117 QLAHLRAHQRTHTG--------------------EKPYK-CPEC------GKSFSREDNL 149
Query: 187 TTHMRVHTG 195
TH R HTG
Sbjct: 150 HTHQRTHTG 158
Score = 119 bits (302), Expect = 3e-32
Identities = 65/189 (34%), Positives = 91/189 (48%), Gaps = 35/189 (18%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
F + +L +H+R H G + C C ++F +L RH +R H + P+ C C
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYK-CPECGKSFSDKKDLTRH-QRTH----TGEKPYKCPECG 84
Query: 69 KRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFS 128
K + +L H+R HTG++PY C CG F A+L HQ HTG++ Y C CGK+FS
Sbjct: 85 KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS 144
Query: 129 RKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFV 186
R+ + TH R HTG E Y+ EC GK+FSR+ +
Sbjct: 145 REDNLHTHQRTHTG--------------------EKPYKC-PEC------GKSFSRRDAL 177
Query: 187 TTHMRVHTG 195
H R HTG
Sbjct: 178 NVHQRTHTG 186
Score = 42.0 bits (100), Expect = 9e-05
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 29/72 (40%)
Query: 126 AFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRK 183
+ S + G E Y EC GK+FSR
Sbjct: 2 SEFGSSSSVAQAALEPG--------------------EKPYAC-PEC------GKSFSRS 34
Query: 184 SFVTTHMRVHTG 195
+ H R HTG
Sbjct: 35 DHLAEHQRTHTG 46
Score = 37.4 bits (88), Expect = 0.003
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
F Q+ +L H+R H G + C C ++F + L H +R H + P+ C C
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYK-CPECGKSFSREDNLHTH-QRTH----TGEKPYKCPECG 168
Query: 69 KRMMTKLSLGIHERIHTGQRP 89
K + +L +H+R HTG++
Sbjct: 169 KSFSRRDALNVHQRTHTGKKT 189
Score = 29.3 bits (67), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F+Q+ +R H++ H
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTH 128
Score = 29.3 bits (67), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F+Q ++R H++ H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTH 100
Score = 29.3 bits (67), Expect = 1.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F+ D+ RH++ H
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTH 72
Score = 28.6 bits (65), Expect = 2.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F++ ++ H++ H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTH 156
Score = 28.6 bits (65), Expect = 3.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F++ + H++ H
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTH 184
Score = 27.0 bits (61), Expect = 9.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 311 PYDCDVCGAKFTQVGDMRRHRKKH 334
PY C CG F++ + H++ H
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTH 44
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 108 bits (273), Expect = 7e-29
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 33/145 (22%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQ---PVHTGQRK 117
C C+K+ ++K L +H R HTG++P+ C CG + K NLL+H+ ++ ++
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKN 175
+ C+VC + F R+ + HM HTG E Y+ C
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTG--------------------EMPYKC-SSC----- 100
Query: 176 GGKAFSRKSFVTTHM-RVHTGKLTG 199
+ F +K + +HM ++H+G +G
Sbjct: 101 -SQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 95.3 bits (238), Expect = 6e-24
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHER---IHTGQ 87
C C + F L H R+H + P+ C C K K +L HE ++ +
Sbjct: 10 CPTCHKKFLSKYYLKVH-NRKH----TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHM-RVHTGKLTG 146
+ + C C FR + L H HTG+ Y C+ C + F +K + +HM ++H+G +G
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 93.3 bits (233), Expect = 3e-23
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 32/117 (27%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMR---VH 140
+G C C F SK L H HTG++ + C CGK + RK + H ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 141 TGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E + C + F R+ + HM HTG
Sbjct: 62 RS--------------------EQVFTC-SVC------QETFRRRMELRLHMVSHTG 91
Score = 29.0 bits (66), Expect = 1.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+C C KF ++ H +KH
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKH 30
Score = 28.6 bits (65), Expect = 1.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREH 52
FR+ + L H H G + + C C + F + +L H+ + H
Sbjct: 76 FRRRMELRLHMVSHTGEMPYK-CSSCSQQFMQKKDLQSHMIKLH 118
Score = 27.9 bits (63), Expect = 3.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + C VC F + ++R H H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSH 89
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 103 bits (259), Expect = 1e-26
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 6 FRGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCR 65
+ + L + LS C TF ELV H ++ E + C
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRP-KKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCY 61
Query: 66 F-----CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKY 118
+ K K L H R+HTG++P+ C + CG F NL H+ HTG++ +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 119 NCTV--CGKAFSRKSFVTTHMRVHTG 142
C C + F+ S HM VHT
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 98.5 bits (246), Expect = 9e-25
Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 45/176 (25%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY--- 90
+ + + + + C++ T L H + P
Sbjct: 3 SGSSGQPIKQELSC-KWID----EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Query: 91 -ICDW-----CGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
+C W G F++K L+ H VHTG++ + C CGK F+R + H R HTG
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 143 KLTGKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E ++ + C + F+ S HM VHT
Sbjct: 118 --------------------EKPFKCEFEGC------DRRFANSSDRKKHMHVHTS 147
Score = 39.6 bits (93), Expect = 5e-04
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 3 PRGFRGFRQVINLLKHRREHGGNLSFDNCHI--CKETFYKHSELVRHLEREHNIPRSESS 60
PR + F+ L+ H R H G F C C + F + L H R H +
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFP-CPFPGCGKIFARSENLKIHK-RTHTGEK---- 119
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C F C++R H +HT +
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 28.8 bits (65), Expect = 1.8
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
C F+ + ++ H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 101 bits (254), Expect = 3e-26
Identities = 40/132 (30%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCG 124
CNKR L +H R HTG++PY CD+ C F L +HQ HTG + + C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 125 KAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFS 181
+ FSR + TH R HTG E + C K F+
Sbjct: 74 RKFSRSDHLKTHTRTHTG--------------------EKPFSCRWPSC------QKKFA 107
Query: 182 RKSFVTTHMRVH 193
R + H +H
Sbjct: 108 RSDELVRHHNMH 119
Score = 85.6 bits (213), Expect = 1e-20
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 33/117 (28%)
Query: 85 TGQRPYICD--WCGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVH 140
+ +RP++C C + ++L H HTG++ Y C C + FSR + H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 141 TGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
TG ++ + C + FSR + TH R HTG
Sbjct: 62 TG--------------------VKPFQ-CKTC------QRKFSRSDHLKTHTRTHTG 91
Score = 83.0 bits (206), Expect = 1e-19
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYI 91
C + ++K S L H R+H + P+ C F C +R L H+R HTG +P+
Sbjct: 14 CNKRYFKLSHLQMH-SRKH----TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 92 CDWCGVGFRSKANLLQHQPVHTGQRKYNC--TVCGKAFSRKSFVTTHMRVH 140
C C F +L H HTG++ ++C C K F+R + H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 31.3 bits (72), Expect = 0.21
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C C KF++ ++ H + H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 27.1 bits (61), Expect = 4.7
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 310 RPYDCD--VCGAKFTQVGDMRRHRKKH 334
RP+ C C ++ ++ ++ H +KH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKH 31
Score = 27.1 bits (61), Expect = 5.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKH 334
+P+ C C KF + ++ RH H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 26.7 bits (60), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKH 334
+PY CD C +F++ ++RH+++H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRH 61
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 99.8 bits (250), Expect = 4e-26
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVC 123
C+ C K +L H IH+ RPY C +CG F K+++ +H +HTG++ + C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 124 GKAFSRKSFVTTHMRVHTG 142
GKAFS+ S + TH R HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 88.6 bits (221), Expect = 4e-22
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 29/108 (26%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFG 149
+ C CG F+ + L H +H+ R Y C CGK F +KS + H +HTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG------- 54
Query: 150 QKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E ++ Q C GKAFS+ S + TH R HTG
Sbjct: 55 -------------EKPHKC-QVC------GKAFSQSSNLITHSRKHTG 82
Score = 64.4 bits (158), Expect = 2e-13
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C IC ++F + S L H H S++ P+ C++C KR K + H IHTG++P+
Sbjct: 4 CKICGKSFKRSSTLSTH-LLIH----SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 91 ICDWCGVGFRSKANLLQHQPVHTG 114
C CG F +NL+ H HTG
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (65), Expect = 0.88
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C CG +F Q DM++H H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 28.5 bits (65), Expect = 0.96
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C VCG F+Q ++ H +KH
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 25.8 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRH 47
F Q ++ KH H G C +C + F + S L+ H
Sbjct: 39 FHQKSDMKKHTFIHTGEKPH-KCQVCGKAFSQSSNLITH 76
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 99.8 bits (250), Expect = 5e-26
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
P+ C+ CG F K L H HTG + Y C C A + S + H+R+H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD- 61
Query: 144 LTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E ++ Q C A S +T H+R HTG
Sbjct: 62 -------------------ERPFKC-QIC------PYASRNSSQLTVHLRSHTG 89
Score = 98.3 bits (246), Expect = 2e-25
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
P C C K K L H R HTG +PY C C ++L +H +H+ +R + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 121 TVCGKAFSRKSFVTTHMRVHTG 142
+C A S +T H+R HTG
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 66.7 bits (164), Expect = 4e-14
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C +C + F + +L H R H + P+ C+ C+ SL H RIH+ +RP+
Sbjct: 11 CEVCGKCFSRKDKLKTH-MRCH----TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 91 ICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
C C R+ + L H HTG +
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 28.9 bits (66), Expect = 0.92
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
P+ C+VCG F++ ++ H + H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCH 31
Score = 28.5 bits (65), Expect = 1.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RP+ C +C + H + H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 28.2 bits (64), Expect = 1.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C C + +H + H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIH 59
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 101 bits (255), Expect = 1e-25
Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 43/192 (22%)
Query: 16 LKHRREHGGNLSFD-NCHICKETFYKHSELVRHLEREHNIPRSESSPWCC--RFCNKRMM 72
+ + + + C + K+ +L H +H + P+ C C K
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEK----PFPCKEEGCEKGFT 55
Query: 73 TKLSLGIHERIHTGQRPYICD--WCGVGFRSKANLLQHQPVHTGQRK--YNCTV--CGKA 126
+ L H HTG++ + CD C + F +KAN+ +H + Y C CGKA
Sbjct: 56 SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA 115
Query: 127 FSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQE-CLFAKNGGKAFSRK 183
F + + + H HT + YE E C K FS
Sbjct: 116 FKKHNQLKVHQFSHTQ--------------------QLPYECPHEGC------DKRFSLP 149
Query: 184 SFVTTHMRVHTG 195
S + H +VH G
Sbjct: 150 SRLKRHEKVHAG 161
Score = 91.9 bits (229), Expect = 5e-22
Identities = 45/195 (23%), Positives = 64/195 (32%), Gaps = 38/195 (19%)
Query: 9 FRQVINLLKHRREHGGNLSFD-NCHICKETFYKHSELVRHLEREHNIPRSESSPWCC--R 65
+ + L H +H G F C++ F L RH H + + C
Sbjct: 24 YNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTH----TGEKNFTCDSD 78
Query: 66 FCNKRMMTKLSLGIHERIHTG--QRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT 121
C+ R TK ++ H Y+C + CG F+ L HQ HT Q Y C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 122 --VCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKA 179
C K FS S + H +VH G K C F GK
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKK-------------------DDSCSFV---GKT 176
Query: 180 FSRKSFVTTHMRVHT 194
++ ++ H
Sbjct: 177 WT--LYLKHVAECHQ 189
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 99.0 bits (248), Expect = 1e-25
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
+ C+FC + +L IHER HT +RPY CD C FR + +L H+ +H+ ++ + C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 121 TVCGKAFSRKSFVTTHMRVHTG 142
CGK F + + H +H
Sbjct: 77 QECGKGFCQSRTLAVHKTLHMQ 98
Score = 76.3 bits (189), Expect = 2e-17
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 29/96 (30%)
Query: 102 KANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFA 161
+ + ++++ C CG+ F++ + H R HT
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD------------------- 42
Query: 162 VE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E Y C KAF R+ + H +H+
Sbjct: 43 -ERPYT-CDIC------HKAFRRQDHLRDHRYIHSK 70
Score = 72.1 bits (178), Expect = 7e-16
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 14 NLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMT 73
R F C C F K L+ H ER H ++ P+ C C+K
Sbjct: 4 GSSGGRLPSKTKKEFI-CKFCGRHFTKSYNLLIH-ERTH----TDERPYTCDICHKAFRR 57
Query: 74 KLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+ L H IH+ ++P+ C CG GF L H+ +H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 30.9 bits (71), Expect = 0.21
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 34/84 (40%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
FR+ +L HR H E +K C+ C
Sbjct: 55 FRRQDHLRDHRYIHSK-----------EKPFK-----------------------CQECG 80
Query: 69 KRMMTKLSLGIHERIHTGQRPYIC 92
K +L +H+ +H
Sbjct: 81 KGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 27.8 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY CD+C F + +R HR H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 27.4 bits (62), Expect = 4.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + C CG FT+ ++ H + H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTH 40
Score = 26.6 bits (60), Expect = 7.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C CG F Q + H+ H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLH 96
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 99.5 bits (249), Expect = 2e-25
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 32/134 (23%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTV--CG 124
C K ++ H H G R ++C CG F + L +HQ VHTG++ + CT CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 125 KAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFS 181
K FS + TH+R+HTG + Y C K F+
Sbjct: 72 KRFSLDFNLRTHVRIHTG--------------------DRPYVCPFDGC------NKKFA 105
Query: 182 RKSFVTTHMRVHTG 195
+ + + +H+ H
Sbjct: 106 QSTNLKSHILTHAK 119
Score = 81.8 bits (203), Expect = 4e-19
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 32/113 (28%)
Query: 88 RPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLT 145
R C C FR + + +H H G R + C CGKAF S + H VHTG
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG--- 59
Query: 146 GKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E ++ + C GK FS + TH+R+HTG
Sbjct: 60 -----------------EKPFQCTFEGC------GKRFSLDFNLRTHVRIHTG 89
Score = 63.3 bits (155), Expect = 2e-12
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKE---TFYKHSELVRHLEREHNIPRSESSPWCCR 65
FR + KH HG H+C E F + S+L RH + H + P+ C
Sbjct: 17 FRDNSAMRKHLHTHG-----PRVHVCAECGKAFVESSKLKRH-QLVH----TGEKPFQCT 66
Query: 66 F--CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKY 118
F C KR +L H RIHTG RPY+C + C F NL H H +
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 30.2 bits (69), Expect = 0.54
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 307 HCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H R + C CG F + ++RH+ H
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 27.9 bits (63), Expect = 3.5
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKHDE 336
R C C F MR+H H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGP 32
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 97.9 bits (245), Expect = 3e-25
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G C+ CG FR +L +H+ H+G++ Y+C VCG F RK ++ H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 144 LTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHM-RVHTGKLTG 199
+ + I Q C GK FSR + H+ +VH+G +G
Sbjct: 62 VGKPY-----------------ICQSC------GKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 89.5 bits (223), Expect = 3e-22
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK--Y 118
C C K L H+ H+G++PY C CG+ F+ K + H H G Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 119 NCTVCGKAFSRKSFVTTHM-RVHTGKLTG 146
C CGK FSR + H+ +VH+G +G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 47.9 bits (115), Expect = 2e-07
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 37/109 (33%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
FR V +L +H+ H G E+ P+ C C
Sbjct: 17 FRDVYHLNRHKLSHSG------------------------EK----------PYSCPVCG 42
Query: 69 KRMMTKLSLGIHERIHTG--QRPYICDWCGVGFRSKANLLQH-QPVHTG 114
R K + H R H G +PYIC CG GF +L H + VH+G
Sbjct: 43 LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 27.8 bits (63), Expect = 1.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 311 PYDCDVCGAKFTQVGDMRRHRKKH 334
C++CG F V + RH+ H
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSH 30
Score = 27.8 bits (63), Expect = 2.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C VCG +F + M H + H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 26.3 bits (59), Expect = 7.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKK 333
+PY C CG F++ + H K+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQ 87
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 99 bits (250), Expect = 3e-25
Identities = 42/178 (23%), Positives = 63/178 (35%), Gaps = 41/178 (23%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKL-----SLGIHERIHT 85
C + F +LV H+ EH E + C + + L +H R HT
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHI--HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 86 GQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT--VCGKAFSRKSFVTTHM-RVH 140
G++P+ C + C + NL H HTG++ Y C C KAFS S H R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 141 TGKLTGKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
+ E Y + C K ++ S + H++ G
Sbjct: 124 SN--------------------EKPYVCKLPGC------TKRYTDPSSLRKHVKTVHG 155
Score = 92.3 bits (230), Expect = 2e-22
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 40/149 (26%)
Query: 61 PWCCRFCNKRMMTKLSLGIH---ERIHTGQRPYICDWCGVGFRSKA-----NLLQHQPVH 112
C++ ++ L H E IH ++ ++C W G + L+ H H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 113 TGQRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YE-II 167
TG++ + CT C K++SR + TH+R HTG E Y
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG--------------------EKPYMCEH 102
Query: 168 QECLFAKNGGKAFSRKSFVTTHM-RVHTG 195
+ C KAFS S H R H+
Sbjct: 103 EGC------SKAFSNASDRAKHQNRTHSN 125
Score = 85.7 bits (213), Expect = 3e-20
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 7 RGFRQVINLLKH---RREHGGNLSFD----NCHICKETFYKHSELVRHLEREHNIPRSES 59
+ F L+ H HG F C F LV H+ R H +
Sbjct: 11 QEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEK--- 66
Query: 60 SPWCCRF--CNKRMMTKLSLGIHERIHTGQRPYIC--DWCGVGFRSKANLLQHQP-VHTG 114
P C F C K +L H R HTG++PY+C + C F + ++ +HQ H+
Sbjct: 67 -PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 115 QRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
++ Y C + C K ++ S + H++ G
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 74.9 bits (185), Expect = 2e-16
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 37/119 (31%)
Query: 88 RPYICDWCGVGFRSKANLLQH---QPVHTGQRKYNCTVCG-----KAFSRKSFVTTHMRV 139
D C F S+ L+ H + +H ++++ C G + F + + HMR
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 140 HTGKLTGKFGQKMSALSGTAFAVE--YE-IIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
HTG E ++ + C K++SR + TH+R HTG
Sbjct: 62 HTG--------------------EKPHKCTFEGC------RKSYSRLENLKTHLRSHTG 94
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 306 HHCDRPYDCDV--CGAKFTQVGDMRRHRKKH 334
H ++PY C + C ++T +R+H K
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 27.2 bits (61), Expect = 8.2
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
D C +F + H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSE 26
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 97.9 bits (245), Expect = 4e-25
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 81 ERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVH 140
+G + Y C CG F K+ +H +H G R Y C VCGK F K + HM++H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 141 TGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
TG YE C K F + + H V +
Sbjct: 61 TG--------------------IKPYEC-NIC------AKRFMWRD--SFHRHVTSC 88
Score = 90.6 bits (226), Expect = 2e-22
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKA 126
C K K H +H G RPY C CG F+ K +L+ H +HTG + Y C +C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 127 FSRKSFVTTHMRVHTG 142
F + + H V +
Sbjct: 75 FMWRD--SFHRHVTSC 88
Score = 80.2 bits (199), Expect = 1e-18
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 34 CKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C ++F S+ RH H R P+ C C K+ K L H +IHTG +PY C+
Sbjct: 15 CGKSFTHKSQRDRH-MSMHLGLR----PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 94 WCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTT 135
C F + + H+ V + + Y + + S ++
Sbjct: 70 ICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 39.0 bits (92), Expect = 3e-04
Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 36/97 (37%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
F+ +L+ H + H G ++ C+IC + F
Sbjct: 47 FKMKHHLVGHMKIHTGIKPYE-CNICAKRFMWRDSF------------------------ 81
Query: 69 KRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANL 105
H + + + Y +
Sbjct: 82 -----------HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 28.9 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C VCG KF + H K H
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIH 60
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 96.0 bits (240), Expect = 7e-25
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 77 LGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTH 136
IH+G++PY C CG F + L+QHQ VHTG++ Y C CGKAFS+ S + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 137 MRVHTG 142
R+HT
Sbjct: 62 QRIHTS 67
Score = 74.8 bits (185), Expect = 3e-17
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 29/93 (31%)
Query: 105 LLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE- 163
+H+G++ Y C CGKAFSR S + H RVHTG E
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG--------------------EK 41
Query: 164 -YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
Y+ EC GKAFS+ S + H R+HT
Sbjct: 42 PYKC-LEC------GKAFSQNSGLINHQRIHTS 67
Score = 62.1 bits (152), Expect = 9e-13
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C K L H+R+HTG++PY C CG F + L+ HQ +HT
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 31.3 bits (72), Expect = 0.071
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 34/82 (41%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
F + L++H+R H G + C C + F ++S L+
Sbjct: 24 FSRSSILVQHQRVHTGEKPYK-CLECGKAFSQNSGLIN---------------------- 60
Query: 69 KRMMTKLSLGIHERIHTGQRPY 90
H+RIHT
Sbjct: 61 -----------HQRIHTSGPSS 71
Score = 27.4 bits (62), Expect = 2.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F+Q + H++ H
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIH 65
Score = 26.3 bits (59), Expect = 4.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F++ + +H++ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVH 37
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 95.6 bits (239), Expect = 1e-24
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTT 135
S G E +R Y CD CG F ++L +H+ HTG++ Y C CGKAF ++S +
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 136 HMRVHTG 142
H RVHTG
Sbjct: 65 HHRVHTG 71
Score = 75.2 bits (186), Expect = 3e-17
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 29/97 (29%)
Query: 101 SKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAF 160
S + + + +R+Y C CGK+FS S ++ H R HTG
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG------------------ 43
Query: 161 AVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E Y+ EC GKAF ++S + H RVHTG
Sbjct: 44 --EKPYKC-DEC------GKAFIQRSHLIGHHRVHTG 71
Score = 60.5 bits (148), Expect = 5e-12
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 40 KHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGF 99
R E + E + C C K L H R HTG++PY CD CG F
Sbjct: 2 SSGSSGRS-EWQQ----RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Query: 100 RSKANLLQHQPVHTGQRKY 118
+++L+ H VHTG
Sbjct: 57 IQRSHLIGHHRVHTGSGPS 75
Score = 28.9 bits (66), Expect = 0.53
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
R Y CD CG F+ D+ +HR+ H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 28.2 bits (64), Expect = 0.98
Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 34/82 (41%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
F +L KHRR H G E YK C C
Sbjct: 28 FSHSSDLSKHRRTHTG-----------EKPYK-----------------------CDECG 53
Query: 69 KRMMTKLSLGIHERIHTGQRPY 90
K + + L H R+HTG P
Sbjct: 54 KAFIQRSHLIGHHRVHTGSGPS 75
Score = 27.0 bits (61), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY CD CG F Q + H + H
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVH 69
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 94.8 bits (237), Expect = 2e-24
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTT 135
H + +PY CD C FR K NL H+ VHTG++ Y C +CG F+R + + T
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 136 HMRVHTG 142
H R+H+G
Sbjct: 64 HTRIHSG 70
Score = 74.0 bits (183), Expect = 7e-17
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 29/94 (30%)
Query: 104 NLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE 163
+ H + + Y C C +F K + +H VHTG E
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG--------------------E 43
Query: 164 --YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
Y C G F+R + + TH R+H+G
Sbjct: 44 KPYRC-NIC------GAQFNRPANLKTHTRIHSG 70
Score = 59.8 bits (146), Expect = 8e-12
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
P+ C C K +L H+ +HTG++PY C+ CG F ANL H +H+G++ Y
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 29/67 (43%)
Query: 131 SFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTT 188
H + + Y+ C +F K + +
Sbjct: 3 HHHHHHSHMTHS--------------------DKPYKC-DRC------QASFRYKGNLAS 35
Query: 189 HMRVHTG 195
H VHTG
Sbjct: 36 HKTVHTG 42
Score = 30.9 bits (71), Expect = 0.10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H D+PY CD C A F G++ H+ H
Sbjct: 12 THSDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 30.5 bits (70), Expect = 0.17
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 34/82 (41%)
Query: 9 FRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCN 68
FR NL H+ H G E Y+ C C
Sbjct: 27 FRYKGNLASHKTVHTG-----------EKPYR-----------------------CNICG 52
Query: 69 KRMMTKLSLGIHERIHTGQRPY 90
+ +L H RIH+G++PY
Sbjct: 53 AQFNRPANLKTHTRIHSGEKPY 74
Score = 29.3 bits (67), Expect = 0.44
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 311 PYDCDVCGAKFTQVGDMRRHRKKH 334
PY C++CGA+F + +++ H + H
Sbjct: 45 PYRCNICGAQFNRPANLKTHTRIH 68
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 92.6 bits (231), Expect = 2e-23
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK----YNCTVCGKAFSRKS 131
S G R HTG++PY C C FR K L H + + C+ CGK F+R++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 132 FVTTHMRVHTG 142
+ H G
Sbjct: 62 TMARHADNCAG 72
Score = 76.0 bits (188), Expect = 2e-17
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 21/92 (22%)
Query: 104 NLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE 163
+ HTG++ Y C+ C K F +K + H + + F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP---NFVPA-----------A 47
Query: 164 YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
+ +C GK F+R++ + H G
Sbjct: 48 FV-CSKC------GKTFTRRNTMARHADNCAG 72
Score = 69.5 bits (171), Expect = 4e-15
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTG----QRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
P+ C C+K K L +H + + ++C CG F + + +H G
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 117 KYNCTVCGKAF 127
G +
Sbjct: 75 GVEGENSGPSS 85
Score = 54.5 bits (132), Expect = 8e-10
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 14 NLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMT 73
+ R H G + C C +TF + L H + ++ P + + C C K
Sbjct: 2 SSGSSGRTHTGEKPYA-CSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 74 KLSLGIHERIHTGQRPYICDWCGVGF 99
+ ++ H G + G
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + C CG FT+ M RH
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 29.4 bits (67), Expect = 0.46
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDKP 345
+PY C C F Q + H K++ + +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRY--HDPNFVPAA 47
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 92.1 bits (230), Expect = 3e-23
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKA 126
C++R SL H RIHTGQ+P+ C C F +L H HTG++ + C +CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 127 FSRKSFVTTHMRVHTG 142
F+R H ++H
Sbjct: 72 FARSDERKRHTKIHLR 87
Score = 85.2 bits (212), Expect = 1e-20
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 31/112 (27%)
Query: 88 RPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLT 145
RPY C C F +L +H +HTGQ+ + C +C + FSR +TTH+R HTG
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG--- 59
Query: 146 GKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
E + C G+ F+R H ++H
Sbjct: 60 -----------------EKPFAC-DIC------GRKFARSDERKRHTKIHLR 87
Score = 32.1 bits (74), Expect = 0.064
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ CD+CG KF + + +RH K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 28.6 bits (65), Expect = 0.94
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C +C F++ + H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 26.7 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 7 RGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRH 47
R F + +L H R H G F C IC F + E RH
Sbjct: 42 RNFSRSDHLTTHIRTHTGEKPF-ACDICGRKFARSDERKRH 81
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 84.9 bits (211), Expect = 1e-20
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT 121
C K L H R HTG++PY CDW CG F L +H HTG R + C
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 122 VCGKAFSRKSFVTTHMRVH 140
C +AFSR + HM+ H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 69.5 bits (171), Expect = 4e-15
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHT 141
T CG + ++L H HTG++ Y+C CG F+R +T H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 142 GKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVH 193
G + ++ Q+C +AFSR + HM+ H
Sbjct: 62 -------GHR-----------PFQ-CQKC------DRAFSRSDHLALHMKRH 88
Score = 52.9 bits (128), Expect = 3e-09
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 29/87 (33%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YE-IIQ 168
T + CGK +++ S + H+R HTG E Y
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG--------------------EKPYHCDWD 41
Query: 169 ECLFAKNGGKAFSRKSFVTTHMRVHTG 195
C G F+R +T H R HTG
Sbjct: 42 GC------GWKFARSDELTRHYRKHTG 62
Score = 31.3 bits (72), Expect = 0.11
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 9 FRQVINLLKHRREHGGNLSFD-NCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFC 67
+ + +L H R H G + + C F + EL RH R+H R P+ C+ C
Sbjct: 17 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHR----PFQCQKC 71
Query: 68 NKRMMTKLSLGIHERIH 84
++ L +H + H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 30.6 bits (70), Expect = 0.20
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
RP+ C C F++ + H K+H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 29.0 bits (66), Expect = 0.69
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 309 DRPYDCDV--CGAKFTQVGDMRRHRKKH 334
++PY CD CG KF + ++ RH +KH
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKH 60
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 84.5 bits (210), Expect = 1e-20
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTG--QRKYNCTVCGKAFSRKSFV 133
S G R H+G++PY C C F + H K++C C +RKS +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 134 TTHMR-VHTG 142
H+R H+
Sbjct: 62 GVHLRKQHSY 71
Score = 67.2 bits (165), Expect = 2e-14
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 24/93 (25%)
Query: 104 NLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE 163
+ H+G++ Y C +C F++ + H+ + KF
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH-------------- 47
Query: 164 YEIIQECLFAKNGGKAFSRKSFVTTHMR-VHTG 195
C +RKS + H+R H+
Sbjct: 48 ---CPHC------DTVIARKSDLGVHLRKQHSY 71
Score = 52.1 bits (126), Expect = 4e-09
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTG--QRPYICDWCGVGFRSKANLLQHQ-PVHTGQRK 117
P+ C C+ R ++ +H + C C K++L H H+
Sbjct: 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Query: 118 Y 118
Sbjct: 75 S 75
Score = 37.1 bits (87), Expect = 7e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+C +C A+FTQ G M+ H +
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQK 38
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 38/93 (40%)
Query: 134 TTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMR 191
+ R H+G E YE C F++ + H+
Sbjct: 4 GSSGRTHSG--------------------EKPYEC-YIC------HARFTQSGTMKMHIL 36
Query: 192 VHTGKLT--------GK-FGQKISALSGIRTQH 215
+ +K +R QH
Sbjct: 37 QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 32.5 bits (75), Expect = 0.030
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 306 HH--CDRPYDCDVCGAKFTQVGDMRRH-RKKH 334
H + C C + D+ H RK+H
Sbjct: 38 KHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 26.7 bits (60), Expect = 3.3
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 9 FRQVINLLKHRREH-GGNLSFDNCHICKETFYKHSELVRHLEREH 52
F Q + H + N++ +C C + S+L HL ++H
Sbjct: 25 FTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 84.1 bits (209), Expect = 2e-20
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 82 RIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
+ P C C SKA L H+ +H R + C C + S ++ HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 142 G 142
G
Sbjct: 62 G 62
Score = 64.4 bits (158), Expect = 1e-13
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
P C C+ +K +L IHERIH RP+ C++C + +NL +H G
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Query: 121 T 121
+
Sbjct: 69 S 69
Score = 62.1 bits (152), Expect = 9e-13
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 29/87 (33%)
Query: 111 VHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQ 168
+ C+ C + S K+ + H R+H + ++
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCT--------------------DRPFKC-N 41
Query: 169 ECLFAKNGGKAFSRKSFVTTHMRVHTG 195
C + S ++ HM+ G
Sbjct: 42 YC------SFDTKQPSNLSKHMKKFHG 62
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
DRP+ C+ C Q ++ +H KK
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 29.8 bits (68), Expect = 0.27
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
P C C + +R H + H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 84.2 bits (209), Expect = 4e-20
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCG 124
C K L H R HTG++PY C W C F L +H HTG + + C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 125 KAFSRKSFVTTHMRVHT 141
++FSR + HM+ H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 66.9 bits (164), Expect = 4e-14
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 31/121 (25%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKSFV 133
RIH P C + ++L H HTG++ Y CT C F+R +
Sbjct: 8 PDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 134 TTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVH 193
T H R HTG K F C ++FSR + HM+ H
Sbjct: 64 TRHYRKHTG-------AK-------PFQCG-----VC------NRSFSRSDHLALHMKRH 98
Query: 194 T 194
Sbjct: 99 Q 99
Score = 48.0 bits (115), Expect = 2e-07
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 27/97 (27%)
Query: 99 FRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGT 158
S L+ + +H C K +++ S + H+R HTG +K
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTG-------EK------- 44
Query: 159 AFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTG 195
+ +E C F+R +T H R HTG
Sbjct: 45 PYKCTWE---GC------DWRFARSDELTRHYRKHTG 72
Score = 33.0 bits (76), Expect = 0.041
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C VC F++ + H K+H
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 30.7 bits (70), Expect = 0.20
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 309 DRPYDC--DVCGAKFTQVGDMRRHRKKH 334
++PY C + C +F + ++ RH +KH
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKH 70
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 81.1 bits (201), Expect = 2e-19
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 81 ERIHTGQRPYICDWCGVGFRSKANLLQHQ--PVHTGQRKYNCTVCGKAFSRKSFVTTHMR 138
E G+ Y C C + +N +H + Y C C K F+RK +T H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 139 VHTG 142
+
Sbjct: 62 IIHK 65
Score = 41.0 bits (97), Expect = 3e-05
Identities = 13/84 (15%), Positives = 19/84 (22%), Gaps = 31/84 (36%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C +C + S RH H + Y
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSH-------------------------------KRNVKVY 41
Query: 91 ICDWCGVGFRSKANLLQHQPVHTG 114
C +C F K N+ H +
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ Y C C +FT+ +M H K
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 31.4 bits (72), Expect = 0.055
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ Y C VC +T + + RH
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTS 33
Score = 29.4 bits (67), Expect = 0.34
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 7 RGFRQVINLLKHRR--EHGGNLSFDNCHICKETFYKHSELVRHLEREHNI 54
R + + N +H + C C + F + + H++ H I
Sbjct: 18 RVYTHISNFCRHYVTSHKRNVKVY-PCPFCFKEFTRKDNMTAHVKIIHKI 66
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 80.6 bits (200), Expect = 4e-19
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
P+ CR C + L H R HTG++P+ CD CG F +H+ +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 121 TVCGKAFSRKSFVTTH---MRVHTG 142
+ S+ + ++ G
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVG 86
Score = 79.1 bits (196), Expect = 1e-18
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 29/111 (26%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGK 147
+P+ C C F +L H HTG++ + C +CG+ F+R H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL---- 57
Query: 148 FGQKMSALSGTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTH---MRVHTG 195
+ + S+ + ++ G
Sbjct: 58 ---------------PIL-EDKV------EELLSKNYHLENEVARLKKLVG 86
Score = 59.4 bits (145), Expect = 1e-11
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 29/81 (35%)
Query: 118 YNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKN 175
+ C +C + FSR +TTH+R HTG E + C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG--------------------EKPFAC-DIC----- 37
Query: 176 GGKAFSRKSFVTTHMRVHTGK 196
G+ F+R H +
Sbjct: 38 -GRKFARSDERKRHRDIQHIL 57
Score = 33.6 bits (78), Expect = 0.019
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHDE 336
+P+ CD+CG KF + + +RHR
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQHI 56
Score = 32.1 bits (74), Expect = 0.051
Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 7 RGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRF 66
R F + +L H R H G F C IC F + E RH +I P
Sbjct: 11 RNFSRSDHLTTHIRTHTGEKPF-ACDICGRKFARSDERKRH-RDIQHI-----LPILEDK 63
Query: 67 CNKRMMTKLSLGIHE---RIHTGQR 88
+ + L + G+R
Sbjct: 64 VEELLSKNYHLENEVARLKKLVGER 88
Score = 29.0 bits (66), Expect = 0.73
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C +C F++ + H + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 27.5 bits (62), Expect = 2.8
Identities = 2/26 (7%), Positives = 5/26 (19%)
Query: 307 HCDRPYDCDVCGAKFTQVGDMRRHRK 332
P D ++ +
Sbjct: 54 QHILPILEDKVEELLSKNYHLENEVA 79
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 76.7 bits (189), Expect = 8e-18
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHT---GQRKYNCTVCGKAFSRKSFVTTHMRVH 140
+G C+ CG R KA+L HQ H ++ C CGK F + V H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 141 TGKLTGKFGQKMSALSG 157
L + SG
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 59.3 bits (144), Expect = 1e-11
Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 22/99 (22%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECL 171
+G C +CG +K+ + H R H + F E C
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL-----------RFPCE-----FC- 44
Query: 172 FAKNGGKAFSRKSFVTTHMRVHTGKLTGKFGQKISALSG 210
GK F + V H L + SG
Sbjct: 45 -----GKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHT---GQRPYICDWCGVGFRSKANLLQHQPVHTGQRK 117
C C K SL H+R H + C++CG F ++ H+
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 118 YNCTVCGKAFS 128
S
Sbjct: 67 LAPQESSGPSS 77
Score = 40.1 bits (94), Expect = 7e-05
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERI-HTGQRP 89
C IC T + + L H R+H + + C FC KR S+ H H
Sbjct: 10 CEICGFTCRQKASLNWHQ-RKHAETVAAL-RFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 90 YICDWCG 96
+ G
Sbjct: 68 APQESSG 74
Score = 37.4 bits (87), Expect = 7e-04
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHDENGG 339
C++CG Q + H++KH E
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVA 35
Score = 36.2 bits (84), Expect = 0.002
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ C+ CG +F + + HR K
Sbjct: 36 ALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 34.7 bits (80), Expect = 0.005
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 7 RGFRQVINLLKHRREH---GGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWC 63
RQ +L H+R+H L F C C + F K + H + H
Sbjct: 15 FTCRQKASLNWHQRKHAETVAALRF-PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESS 73
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 75.7 bits (187), Expect = 2e-17
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 84 HTGQRPYICDW--CGVGFRSKANLLQHQ-PVHTGQRKYNCT--VCGKAFSRKSFVTTHMR 138
+G CD+ CG F ++ L H+ H Q+ ++C CGK+F+ K + HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 139 VHTG 142
+H+
Sbjct: 62 LHSD 65
Score = 72.2 bits (178), Expect = 3e-16
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERI-HTGQRPYICD--WCGVGFRSKANLLQHQPVHTGQ 115
C F C + + L H++ H Q+ + C CG F K +L +H +H+
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 116 RKYNCTVCGKAF 127
R Y C G +
Sbjct: 67 RDYICEFSGPSS 78
Score = 57.9 bits (141), Expect = 3e-11
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 26/87 (29%)
Query: 112 HTGQRKYNCTV--CGKAFSRKSFVTTHMRV-HTGKLTGKFGQKMSALSGTAFAVEYEIIQ 168
+G C CG+ FS + ++ H + H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIH----------------------QKSF 39
Query: 169 ECLFAKNGGKAFSRKSFVTTHMRVHTG 195
C GK+F+ K + HM++H+
Sbjct: 40 SCPE-PACGKSFNFKKHLKEHMKLHSD 65
Score = 26.0 bits (58), Expect = 7.7
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 310 RPYDCD--VCGAKFTQVGDMRRHRKKH 334
+ + C CG F ++ H K H
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLH 63
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 72.9 bits (180), Expect = 1e-16
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHM-RVHTG 142
R ++C+ C F + +L +H HT ++ Y C +C +AF+R+ + H ++H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 54.4 bits (132), Expect = 4e-10
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQH-QPVHTG 114
+ C C + + L H R HT ++PY C C F + L++H Q +H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
+AF+R+ + H R HT
Sbjct: 9 TRAFARQEHLKRHYRSHTN 27
Score = 31.3 bits (72), Expect = 0.059
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 7 RGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREH 52
R F + +L +H R H + C +C F + L+RH ++ H
Sbjct: 10 RAFARQEHLKRHYRSHTNEKPYP-CGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.0 bits (66), Expect = 0.43
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
R + C+VC F + ++RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.2 bits (64), Expect = 0.80
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKK 333
+PY C +C FT+ + RH +K
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQK 52
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 73.0 bits (180), Expect = 2e-16
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 64 CRF--CNKRMMTKLSLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYN 119
C F C K L +H+ HT Q PY C C F + L +H+ VH G
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 120 CTVCGKAFSRKSFVTTHMR 138
C + H+
Sbjct: 64 DDSCSFVGKTWTLYLKHVA 82
Score = 46.5 bits (111), Expect = 4e-07
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 31/83 (37%)
Query: 118 YNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQE-CLF 172
Y C CGKAF + + + H HT + YE E C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ--------------------QLPYECPHEGC-- 39
Query: 173 AKNGGKAFSRKSFVTTHMRVHTG 195
K FS S + H +VH G
Sbjct: 40 ----DKRFSLPSRLKRHEKVHAG 58
Score = 28.4 bits (64), Expect = 1.1
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 7 RGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREH 52
+ F L +H + H G C + ++H+ H
Sbjct: 41 KRFSLPSRLKRHEKVHAGYPCK-KDDSCSFVGKTWTLYLKHVAECH 85
Score = 27.6 bits (62), Expect = 1.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKH 334
PY+C C +F+ ++RH K H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVH 56
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 68.5 bits (168), Expect = 6e-15
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 80 HERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHM 137
+ RPY C C F L +H +HTGQ+ + C +C + FSR +TTH+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 138 RVHT 141
R HT
Sbjct: 70 RTHT 73
Score = 46.9 bits (112), Expect = 3e-07
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 27/89 (30%)
Query: 108 HQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYE 165
V R Y C V C + FSR +T H+R+HTG QK F
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG-------QKP-------FQCR-- 53
Query: 166 IIQECLFAKNGGKAFSRKSFVTTHMRVHT 194
C + FSR +TTH+R HT
Sbjct: 54 ---IC------MRNFSRSDHLTTHIRTHT 73
Score = 30.4 bits (69), Expect = 0.16
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H +P+ C +C F++ + H + H
Sbjct: 44 HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.0 bits (68), Expect = 0.28
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKH 334
RPY C V C +F++ ++ RH + H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIH 44
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
+ FSR +T H+R+HTG
Sbjct: 28 DRRFSRSDELTRHIRIHTG 46
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 67.6 bits (166), Expect = 7e-15
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQH-QPVHTGQRKYNCTVCGKAFS 128
G + +PYIC CG GF +L H + VHT +R + C V S
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 50.7 bits (122), Expect = 8e-09
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHM-RVHTG 142
+ + Y C CGK FSR + H+ +VHT
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 61 PWCCRFCNKRMMTKLSLGIHE-RIHTGQRPYICDWCGVGFRS 101
P+ C+ C K L H ++HT +RP+ C G S
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 31.8 bits (73), Expect = 0.038
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 168 QECLFAKNGGKAFSRKSFVTTHM-RVHTG 195
Q C GK FSR + H+ +VHT
Sbjct: 16 QSC------GKGFSRPDHLNGHIKQVHTS 38
Score = 29.1 bits (66), Expect = 0.33
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKK 333
+PY C CG F++ + H K+
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
Score = 25.6 bits (57), Expect = 6.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 310 RPYDCDVCGAKFTQ 323
RP+ C V + +
Sbjct: 40 RPHKCQVWVSGPSS 53
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG G+ SK NL HQ VHTG+R +
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK ++ K + H +VHTG
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +K +L +H+++HTG+RP
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK ++ K + H +VHTG
Sbjct: 19 GKGYNSKFNLDMHQKVHTG 37
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG + ++ H+K H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 65.3 bits (160), Expect = 4e-14
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TGQ+P+ C CG FR+K NL+ HQ +HTG++ +
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 56.4 bits (137), Expect = 6e-11
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TGQ+ + CT CGK+F K + TH R+HTG
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 37.1 bits (87), Expect = 4e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K +L H+RIHTG++
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F K + TH R+HTG
Sbjct: 19 GKSFRAKGNLVTHQRIHTG 37
Score = 27.5 bits (62), Expect = 0.98
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P++C CG F G++ H++ H
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG+ P+IC CG F K NL+ HQ +HTG+R +
Sbjct: 1 GSSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+ + C+ CGK F+ K+ + H ++HTG
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K +L IH++IHTG+RP
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F+ K+ + H ++HTG
Sbjct: 19 GKVFTHKTNLIIHQKIHTG 37
Score = 27.5 bits (62), Expect = 0.85
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
P+ C CG FT ++ H+K H
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G + ++PY C+ CG G+ + NL HQ VH G++ +
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+ ++ Y C CGK ++R+ + H RVH G
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 37.1 bits (87), Expect = 4e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +L+L +H+R+H G++
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK ++R+ + H RVH G
Sbjct: 19 GKGYNRRLNLDMHQRVHMG 37
Score = 27.5 bits (62), Expect = 0.94
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG + + ++ H++ H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 63.5 bits (154), Expect = 4e-13
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTT 135
S G ++IH G R C CG+ F ++ L + + C C K +++ +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNK 57
Query: 136 HMRVHTGKLT 145
+GK T
Sbjct: 58 DEGNESGKKT 67
Score = 44.3 bits (104), Expect = 2e-06
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 32/98 (32%)
Query: 101 SKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAF 160
S + + Q +H G R C+ CG F R+S ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR------------------------ 37
Query: 161 AVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTGKLT 198
+ + ++C K +++ + +GK T
Sbjct: 38 --KTPMCEKC------RKDSCQEAALNKDEGNESGKKT 67
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 4e-13
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG +PY C+ CG F + L +HQ VHTG++ +
Sbjct: 1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG + Y C CGKAFS+ S + H RVHTG
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+R+HTG++P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS+ S + H RVHTG
Sbjct: 19 GKAFSQTSKLARHQRVHTG 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F+Q + RH++ H
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-13
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PYIC CG F ++NL++HQ +HT Q+ +
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF+ +S + H ++HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + +L H++IHT Q+P
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 29/63 (46%)
Query: 135 THMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRV 192
+ TG E Y EC GKAF+ +S + H ++
Sbjct: 2 SSGSSGTG--------------------EKPYIC-AEC------GKAFTIRSNLIKHQKI 34
Query: 193 HTG 195
HT
Sbjct: 35 HTK 37
Score = 27.9 bits (63), Expect = 0.76
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG FT ++ +H+K H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 5e-13
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++PY C CG G++ + +L HQ VHTG++ +
Sbjct: 1 GSSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGK + R+ + H RVHTG
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C C K +L L H+R+HTG++
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK + R+ + H RVHTG
Sbjct: 19 GKGYKRRLDLDFHQRVHTG 37
Score = 27.5 bits (62), Expect = 0.87
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG + + D+ H++ H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 6e-13
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG+RPYIC CG F ++NL++HQ +HTG++
Sbjct: 1 GSSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+R Y CTVCGKAF+ +S + H ++HTG
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + +L H++IHTG++P
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.23
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C VCG FT ++ +H+K H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++PY+CD+CG F A L++HQ +HTG++ +
Sbjct: 1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGKAF + + H R+HTG
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C +C K L H+RIHTG++P
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF + + H R+HTG
Sbjct: 19 GKAFGLSAELVRHQRIHTG 37
Score = 28.2 bits (64), Expect = 0.52
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY CD CG F ++ RH++ H
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 7e-13
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ CD CG F ++ L +H VHT ++ +
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 56.3 bits (137), Expect = 5e-11
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C +CGK+F +S + H VHT
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 35.5 bits (83), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C C K + L H +HT ++P
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F +S + H VHT
Sbjct: 19 GKSFCGRSRLNRHSMVHTA 37
Score = 28.6 bits (65), Expect = 0.35
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ CD+CG F + RH H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-13
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++PY C+ CG F K+ L HQ HTG++ +
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGK FS+KS ++ H R HTG
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L H+R HTG++P
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK FS+KS ++ H R HTG
Sbjct: 19 GKTFSQKSILSAHQRTHTG 37
Score = 26.7 bits (60), Expect = 1.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F+Q + H++ H
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-13
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F KANL QHQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF++K+ +T H R+HTG
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K +L H+RIHTG++P
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF++K+ +T H R+HTG
Sbjct: 19 GKAFAQKANLTQHQRIHTG 37
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F Q ++ +H++ H
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-13
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G++ Y CD CG F ++L HQ VHTG++ +
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 7e-11
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C VCGK FS+ S + TH RVHTG
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K L H+R+HTG++P
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.007
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK FS+ S + TH RVHTG
Sbjct: 19 GKEFSQSSHLQTHQRVHTG 37
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++ Y CDVCG +F+Q ++ H++ H
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-13
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F K+ L HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 6e-11
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C++CGK+F++KS + H ++HTG
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L +H++IHTG++P
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F++KS + H ++HTG
Sbjct: 19 GKSFTKKSQLHVHQQIHTG 37
Score = 27.5 bits (62), Expect = 0.86
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C +CG FT+ + H++ H
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 61.4 bits (150), Expect = 9e-13
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG FR + LL+HQ VH+G++ +
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ YNC CGK+F S + H RVH+G
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C K L H+R+H+G++P
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.017
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F S + H RVH+G
Sbjct: 19 GKSFRWASCLLKHQRVHSG 37
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C CG F + +H++ H
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-13
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY CD C FR ++L HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C VC K+F S +T H R+HTG
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 36.3 bits (85), Expect = 7e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C+K SL +H+RIHTG++P
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
K+F S +T H R+HTG
Sbjct: 19 HKSFRYGSSLTVHQRIHTG 37
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY CDVC F + H++ H
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.3 bits (150), Expect = 1e-12
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG++PY C+ C F +K+NL+ HQ HTG+ +
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C C KAF+ KS + H R HTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K TK +L +H+R HTG+
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
KAF+ KS + H R HTG
Sbjct: 19 QKAFNTKSNLMVHQRTHTG 37
Score = 25.9 bits (58), Expect = 3.1
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+C+ C F ++ H++ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY CD C F A+L QHQ VH+G++ +
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C VC KAFS + +T H RVH+G
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K SL H+R+H+G++P
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
KAFS + +T H RVH+G
Sbjct: 19 RKAFSHHASLTQHQRVHSG 37
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+CDVC F+ + +H++ H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG++PY C CG F K+ L HQ +HTG+
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C+ CGK+F +KS + H R+HTG
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + K L +H+RIHTG+ P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F +KS + H R+HTG
Sbjct: 19 GKSFIKKSQLHVHQRIHTG 37
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C CG F + + H++ H
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCG 124
G +G++P+ C+ CG GF + + HQ H+G++ + G
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 54.1 bits (131), Expect = 4e-10
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ + C CGK F S +H R H+G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCG 96
P+ C C K T H+R H+G++P G
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F S +H R H+G
Sbjct: 19 GKGFYTNSQCYSHQRSHSG 37
Score = 27.5 bits (62), Expect = 1.00
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C+ CG F H++ H
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG+R Y C CG F K+ L HQ +H G++ +
Sbjct: 1 GSSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 56.8 bits (138), Expect = 4e-11
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+R Y C+ CGKAF +KS ++ H R+H G
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K + K +L +H+RIH G++P
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.007
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF +KS ++ H R+H G
Sbjct: 19 GKAFIQKSTLSMHQRIHRG 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+R Y+C CG F Q + H++ H
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++PY C CG FR ++L+QH VH+G+R +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C VCGKAF S + H VH+G
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C K L H +H+G+RP
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF S + H VH+G
Sbjct: 19 GKAFRVSSHLVQHHSVHSG 37
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C VCG F + +H H
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG+R Y C CG F K+ L+ HQ +HTG++ +
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 59.0 bits (144), Expect = 7e-12
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+R Y C+ CGKAF+RKS + H R+HTG
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 36.3 bits (85), Expect = 7e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K K +L +H+RIHTG++P
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF+RKS + H R+HTG
Sbjct: 19 GKAFARKSTLIMHQRIHTG 37
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+R Y+C CG F + + H++ H
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ C C F +K+NL+ HQ HTG++ +
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 4e-10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C+ C KAF+ KS + H R HTG
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K TK +L +H+R HTG++P
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.009
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
KAF+ KS + H R HTG
Sbjct: 19 QKAFNTKSNLIVHQRTHTG 37
Score = 26.3 bits (59), Expect = 2.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P++C C F ++ H++ H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TGQRPY C CG F++K++L+ H+ HTG++ +
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TGQR Y C CGKAF KS + H R HTG
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 37.1 bits (87), Expect = 4e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K TK SL H R HTG++P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF KS + H R HTG
Sbjct: 19 GKAFKTKSSLICHRRSHTG 37
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY+C CG F + HR+ H
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG FR+ +NL HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF S +TTH +HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +L H+ IHTG++P
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF S +TTH +HTG
Sbjct: 19 GKAFRAHSNLTTHQVIHTG 37
Score = 25.6 bits (57), Expect = 5.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F ++ H+ H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG++PY C CG F ++NL HQ +HTG++
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF+ +S + TH ++HTG
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + +L H++IHTG++P
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF+ +S + TH ++HTG
Sbjct: 19 GKAFTDRSNLFTHQKIHTG 37
Score = 28.2 bits (64), Expect = 0.51
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG FT ++ H+K H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ C CG F + L HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C CGK+FS S + TH R+HTG
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+RIHTG++P
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+FS S + TH R+HTG
Sbjct: 19 GKSFSISSQLATHQRIHTG 37
Score = 25.9 bits (58), Expect = 3.7
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P++C CG F+ + H++ H
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F + +L HQ +H+G++ +
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C+VCGKAFS + ++ H R+H+G
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + SL +H+RIH+G++P
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS + ++ H R+H+G
Sbjct: 19 GKAFSHRQSLSVHQRIHSG 37
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+C VCG F+ + H++ H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG+RP+ C+ CG F A+L+QHQ +HTG++ +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+R + C CGK+F + + + H R+HTG
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P C C K + L H+RIHTG++P
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F + + + H R+HTG
Sbjct: 19 GKSFIQSAHLIQHQRIHTG 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+RP+ C+ CG F Q + +H++ H
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++P+ C CG F L QH+ +HTG++ +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ ++C CGKAFS + H R+HTG
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 36.3 bits (85), Expect = 7e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + L H RIHTG++P
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS + H R+HTG
Sbjct: 19 GKAFSDHIGLNQHRRIHTG 37
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+DC CG F+ + +HR+ H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG GF + +L H VHTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F + + TH VHTG
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 36.4 bits (85), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + + L H +HTG++P
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 168 QECLFAKNGGKAFSRKSFVTTHMRVHTG 195
+EC GK F + + TH VHTG
Sbjct: 16 EEC------GKGFICRRDLYTHHMVHTG 37
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F D+ H H
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.3 bits (147), Expect = 2e-12
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G++PY C CG F SK+ L+ H H+G++ +
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C+ CGKAFS KS++ HMR H+G
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +K L IH R H+G++P
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS KS++ HMR H+G
Sbjct: 19 GKAFSSKSYLIIHMRTHSG 37
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+ + H + H
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++PY C+ CG F A+L QH VHT + +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 59.8 bits (146), Expect = 3e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y+C VCGKAF + + H+RVHT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C C K + L H R+HT +
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.1 bits (61), Expect = 1.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+VCG F + +H + H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG FR + L +HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 4e-11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F S+++ H R+HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+RIHTG++P
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F S+++ H R+HTG
Sbjct: 19 GKVFRHNSYLSRHQRIHTG 37
Score = 25.9 bits (58), Expect = 3.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F + RH++ H
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G+R + C CG F +N +QH+ +HTG++ +
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 6e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G+R + C+ CGK F + S H R+HTG
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
C C K + + H RIHTG++P
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F + S H R+HTG
Sbjct: 19 GKFFLQASNFIQHRRIHTG 37
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H +R + C CG F Q + +HR+ H
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG FR++++L HQ H+G++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 55.6 bits (135), Expect = 9e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF +S + H H+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + SL IH+ H+G++P
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF +S + H H+G
Sbjct: 19 GKAFRARSSLAIHQATHSG 37
Score = 26.0 bits (58), Expect = 3.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F + H+ H
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG+ PY C CG F K L+ HQ H G++ +
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+ Y C CGKAFSRK + +H R H G
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L H+R H G++P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFSRK + +H R H G
Sbjct: 19 GKAFSRKYQLISHQRTHAG 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ PY+C CG F++ + H++ H
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F ++L HQ +HTG + +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F++ S + H R+HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+RIHTG +P
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + H R+HTG
Sbjct: 19 GKVFTQNSHLANHQRIHTG 37
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + H++ H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.8 bits (146), Expect = 3e-12
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG +PY+C+ CG FRSK+ L+ H HTG+ +
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG + Y C CGKAF KS++ H R HTG
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 37.1 bits (87), Expect = 4e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +K L IH R HTG+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF KS++ H R HTG
Sbjct: 19 GKAFRSKSYLIIHTRTHTG 37
Score = 25.5 bits (57), Expect = 4.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 311 PYDCDVCGAKFTQVGDMRRHRKKH 334
PY C+ CG F + H + H
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 3e-12
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F ++ QHQ +HTGQR +
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 55.7 bits (135), Expect = 1e-10
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAF S T H R+HTG
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 36.8 bits (86), Expect = 5e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K S H+R+HTGQRP
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF S T H R+HTG
Sbjct: 19 GKAFGDNSSCTQHQRLHTG 37
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F +H++ H
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG + + C CG F K+ L HQ +HTG++ +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG + + CT CGKAF+RKS ++ H ++HTG
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K K +L +H++IHTG++P
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF+RKS ++ H ++HTG
Sbjct: 19 GKAFTRKSTLSMHQKIHTG 37
Score = 25.9 bits (58), Expect = 3.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ ++C CG FT+ + H+K H
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 3e-12
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ C CG F + L+ HQ +HTG+ +
Sbjct: 1 GSSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 54.5 bits (132), Expect = 3e-10
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C CGK+FS S + H R+HTG
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P CR C K L +H+RIHTG+ P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+FS S + H R+HTG
Sbjct: 19 GKSFSFNSQLIVHQRIHTG 37
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.9 bits (146), Expect = 4e-12
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG +PY C C F K+ L+ HQ HTG + +
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 55.6 bits (135), Expect = 9e-11
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG + Y C+ C K FS KS + H R HTG
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L +H+R HTG +P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
K FS KS + H R HTG
Sbjct: 19 AKTFSLKSQLIVHQRSHTG 37
Score = 26.0 bits (58), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C C F+ + H++ H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F + L +HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAFS+ S + H R+HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+RIHTG++P
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS+ S + H R+HTG
Sbjct: 19 GKAFSQTSKLARHQRIHTG 37
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG F+Q + RH++ H
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 4e-12
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F +++L HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 57.2 bits (139), Expect = 3e-11
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAFS +S +TTH +HTG
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + SL H+ IHTG++P
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS +S +TTH +HTG
Sbjct: 19 GKAFSVRSSLTTHQAIHTG 37
Score = 26.3 bits (59), Expect = 2.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C+ CG F+ + H+ H
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-12
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G+RPY C+ CG F ++L++H H ++ +
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 57.9 bits (141), Expect = 1e-11
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G+R Y C CGK F R S + H++ H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 34.4 bits (80), Expect = 0.004
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F R S + H++ H
Sbjct: 19 GKNFGRHSHLIEHLKRHFR 37
Score = 32.9 bits (76), Expect = 0.012
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H + H ++
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 27.9 bits (63), Expect = 0.62
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C+ CG F + + H K+H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-12
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PYIC+ CG F K++L +H+ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK+F +KS + H R+HTG
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + K L H RIHTG++P
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F +KS + H R+HTG
Sbjct: 19 GKSFIQKSHLNRHRRIHTG 37
Score = 27.9 bits (63), Expect = 0.76
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F Q + RHR+ H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++P+ C CG + + +L QHQ VHTG++ +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C CGK+++++ +T H RVHTG
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K ++ L H+R+HTG++P
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+++++ +T H RVHTG
Sbjct: 19 GKSYNQRVHLTQHQRVHTG 37
Score = 26.3 bits (59), Expect = 2.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C CG + Q + +H++ H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F + L +HQ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ YNC CGKAF S + H R+HTG
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + L H+RIHTG++P
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF S + H R+HTG
Sbjct: 19 GKAFIHDSQLQEHQRIHTG 37
Score = 26.7 bits (60), Expect = 2.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C+ CG F ++ H++ H
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F K+ L HQ HTG+R +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 56.0 bits (136), Expect = 8e-11
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C+ CGKAF+RKS + H + HTG
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L IH++ HTG+R
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF+RKS + H + HTG
Sbjct: 19 GKAFTRKSGLHIHQQSHTG 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 311 PYDCDVCGAKFTQVGDMRRHRKKH 334
PY C CG FT+ + H++ H
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-12
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C C F KA+L QHQ HTG++ +
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C VC KAF++K+ + H + HTG
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C+K K L H++ HTG++P
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
KAF++K+ + H + HTG
Sbjct: 19 SKAFTQKAHLAQHQKTHTG 37
Score = 28.3 bits (64), Expect = 0.54
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C VC FTQ + +H+K H
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 6e-12
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C CG F K+ L HQ HTG+R +
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 53.7 bits (130), Expect = 5e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C+ CGK+F+ KS + H + HTG
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L IH++ HTG+R
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.1 bits (74), Expect = 0.019
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F+ KS + H + HTG
Sbjct: 19 GKSFTWKSRLRIHQKCHTG 37
Score = 29.0 bits (66), Expect = 0.31
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG FT +R H+K H
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.1 bits (144), Expect = 6e-12
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++PY C CG F +L+QHQ VHTG++ +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 8e-11
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGKAFS+ + + H RVHTG
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C K L H+R+HTG++P
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.009
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS+ + + H RVHTG
Sbjct: 19 GKAFSQTTHLIQHQRVHTG 37
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C CG F+Q + +H++ H
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 7e-12
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++ Y C CG F LL+H+ +H+G++ +
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 56.4 bits (137), Expect = 6e-11
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ YNC CGK+FSR + H R+H+G
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C+ C K L HER+H+G++P
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 29/63 (46%)
Query: 135 THMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMRV 192
+ TG E Y +EC GK+FSR + H R+
Sbjct: 2 SSGSSGTG--------------------EKLYNC-KEC------GKSFSRAPCLLKHERL 34
Query: 193 HTG 195
H+G
Sbjct: 35 HSG 37
Score = 26.3 bits (59), Expect = 2.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ Y+C CG F++ + +H + H
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
TG +PY+C+ CG F ++L HQ +HTG++
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 4e-11
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG + Y C CGKAFS S +TTH +HTG
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K SL H+ IHTG++P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS S +TTH +HTG
Sbjct: 19 GKAFSVYSSLTTHQVIHTG 37
Score = 26.7 bits (60), Expect = 2.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG F+ + H+ H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ C CG GF ++ L H +HTG++ +
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C CGK FSR+S + H ++HTG
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 36.0 bits (84), Expect = 9e-04
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + +L +H ++HTG++P
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK FSR+S + H ++HTG
Sbjct: 19 GKGFSRRSALNVHHKLHTG 37
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C CG F++ + H K H
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++ Y C+ CG F + L QHQ +HTG++ +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+++Y C CGK FSR S ++ H ++HTG
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K L H++IHTG++P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK FSR S ++ H ++HTG
Sbjct: 19 GKVFSRNSQLSQHQKIHTG 37
Score = 25.6 bits (57), Expect = 4.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ Y C+ CG F++ + +H+K H
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-12
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+G++PY C+ CG F ++L H +HTG++ +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 3e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGK F++ S +T H R+HTG
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H RIHTG++P
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S +T H R+HTG
Sbjct: 19 GKVFTQNSHLTNHWRIHTG 37
Score = 25.9 bits (58), Expect = 3.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + H + H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-11
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G++PY C CG F L QH HT ++ +
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 57.6 bits (140), Expect = 2e-11
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C+ CGK+FS +T H HT
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+FS +T H HT
Sbjct: 19 GKSFSGSYRLTQHWITHTR 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H HT ++P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C CG F+ + +H H
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 1e-11
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F ++L++H+ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 53.6 bits (130), Expect = 6e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F++ S + H +HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H IHTG++P
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.010
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + H +HTG
Sbjct: 19 GKVFTQNSHLVRHRGIHTG 37
Score = 26.7 bits (60), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + RHR H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P C CG F K+ L+ HQ H + +
Sbjct: 1 GSSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ CT CGKAF KS + H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P C C K K L +H+R H +
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF KS + H R H
Sbjct: 19 GKAFCWKSQLIMHQRTHVD 37
Score = 26.0 bits (58), Expect = 3.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P C CG F + H++ H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F ++L +H+ +HTG++ +
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 7e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F++ S + H +HTG
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H IHTG++P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.009
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + H +HTG
Sbjct: 19 GKVFTQNSHLARHRGIHTG 37
Score = 26.7 bits (60), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + RHR H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++P+ C+ CG F ++L HQ VHTG++ +
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ + C CGK F++ S + +H RVHTG
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C KR L H+R+HTG++P
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + +H RVHTG
Sbjct: 19 GKRFTQNSHLHSHQRVHTG 37
Score = 27.9 bits (63), Expect = 0.63
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C+ CG +FTQ + H++ H
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G++ + C+ C F ++L HQ +HTG++ +
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ + C C K F++ S +T H R+HTG
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 36.3 bits (85), Expect = 8e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
+ C C K SL +H+RIHTG++P
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
K F++ S +T H R+HTG
Sbjct: 19 KKTFTQSSSLTVHQRIHTG 37
Score = 26.3 bits (59), Expect = 2.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + C+ C FTQ + H++ H
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+G++P+ C CG FR +L H +HTG++ +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-10
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ + C CGKAF + + +H+R+HTG
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C K + L H RIHTG++P
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF + + +H+R+HTG
Sbjct: 19 GKAFRQNIHLASHLRIHTG 37
Score = 26.3 bits (59), Expect = 2.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++P+ C CG F Q + H + H
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++P+ C+ CG F + L HQ VHTG++ +
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ + C CGK F++ S + +H RVHTG
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C KR L H+R+HTG++P
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + +H RVHTG
Sbjct: 19 GKRFTQNSQLHSHQRVHTG 37
Score = 28.3 bits (64), Expect = 0.54
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C+ CG +FTQ + H++ H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+G++PY C CG F +L +H+ +HTG R +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C+ CGKAF R + + H R+HTG
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF R + + H R+HTG
Sbjct: 19 GKAFHRHTHLNEHRRIHTG 37
Score = 33.6 bits (78), Expect = 0.007
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H RIHTG RP
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 25.1 bits (56), Expect = 6.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F + + HR+ H
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G PY C C F K LL HQ +HT ++ +
Sbjct: 1 GSSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 53.7 bits (130), Expect = 5e-10
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G Y C+ C K+FS K + H R+HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K KL L +H+R+HT ++P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
K+FS K + H R+HT
Sbjct: 19 EKSFSGKLRLLVHQRMHTR 37
Score = 27.5 bits (62), Expect = 1.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
PY C C F+ + H++ H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
TG++PY C CG FR ++L +HQ +HTG++ +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 55.9 bits (136), Expect = 9e-11
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F R S + H +HTG
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F R S + H +HTG
Sbjct: 19 GKVFRRNSHLARHQLIHTG 37
Score = 33.2 bits (77), Expect = 0.008
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H+ IHTG++P
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C CG F + + RH+ H
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.6 bits (140), Expect = 2e-11
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
T + YNC CGKAF+R +T H ++HT K
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 54.5 bits (132), Expect = 2e-10
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
T + Y C+ CG F +L +HQ +HT + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
GKAF+R +T H ++HT K
Sbjct: 19 GKAFTRIFHLTRHQKIHTRK 38
Score = 27.9 bits (63), Expect = 0.68
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ Y+C+ CG FT++ + RH+K H
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 57.6 bits (140), Expect = 2e-11
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G + + + C CG GF K++L QHQ +HTG++ +
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 54.9 bits (133), Expect = 2e-10
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+ + + C CG+ F+ KS + H R+HTG
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
C C + K L H+RIHTG++P
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
G+ F+ KS + H R+HTG
Sbjct: 19 GRGFTLKSHLNQHQRIHTG 37
Score = 27.9 bits (63), Expect = 0.60
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + C CG FT + +H++ H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG+ Y C CGK FSRK + +H + H+G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG+ PY C CG F K L+ HQ H+GQ +
Sbjct: 1 GSSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 35.9 bits (84), Expect = 9e-04
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK FSRK + +H + H+G
Sbjct: 19 GKVFSRKDQLVSHQKTHSG 37
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L H++ H+GQ
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ PY+C CG F++ + H+K H
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F ++L +H+ VHTG + +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 52.9 bits (128), Expect = 1e-09
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F++ S + H RVHTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H R+HTG +P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + H RVHTG
Sbjct: 19 GKVFTQNSHLARHRRVHTG 37
Score = 27.5 bits (62), Expect = 0.96
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C+ CG FTQ + RHR+ H
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++PY C+ CG F ++L +H+ +HTG++ +
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 7e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ Y C CGK F++ S + H +HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K L H IHTG++P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F++ S + H +HTG
Sbjct: 19 GKVFTQNSHLARHRGIHTG 37
Score = 26.7 bits (60), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CG FTQ + RHR H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G +G++PY C C F +L QH+ VHTG+R
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C C K F + + H RVHTG
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C+ C K + L H+R+HTG+R
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
K F + + H RVHTG
Sbjct: 19 RKTFIQIGHLNQHKRVHTG 37
Score = 29.0 bits (66), Expect = 0.28
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY+C C F Q+G + +H++ H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 58.2 bits (141), Expect = 3e-11
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 76 SLGIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCTV--CGKAFSRKS 131
+ + R +IC CG + ++L H HTG++ ++C+ C + F+R
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 132 FVTTHMRVH 140
++ H R H
Sbjct: 64 ELSRHRRTH 72
Score = 44.7 bits (106), Expect = 2e-06
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 25/88 (28%)
Query: 108 HQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYE 165
Q + R + C+ CGK + + S + H R HTG +K F+ ++
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG-------EK-------PFSCSWK 53
Query: 166 IIQECLFAKNGGKAFSRKSFVTTHMRVH 193
C + F+R ++ H R H
Sbjct: 54 ---GC------ERRFARSDELSRHRRTH 72
Score = 30.0 bits (68), Expect = 0.25
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 306 HHCDRPYDCDV--CGAKFTQVGDMRRHRKKH 334
H ++P+ C C +F + ++ RHR+ H
Sbjct: 42 HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.5 bits (64), Expect = 0.70
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK + + S + H R HTG
Sbjct: 26 GKTYFKSSHLKAHTRTHTG 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 3e-11
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G+RP+ C+ CG GF +++L H +H+ ++ +
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 56.4 bits (137), Expect = 6e-11
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G+R + C CGK F R+S + H+R+H+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + L H R+H+ ++
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F R+S + H+R+H+
Sbjct: 19 GKGFGRRSHLAGHLRLHSR 37
Score = 27.5 bits (62), Expect = 1.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+RP+ C+ CG F + + H + H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G +G++PY C+ CG F K+ L+ H+ H G +
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y C CGKAF KS + H R H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K + K L +HER H G
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF KS + H R H G
Sbjct: 19 GKAFIWKSLLIVHERTHAG 37
Score = 25.6 bits (57), Expect = 4.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY+C+ CG F + H + H
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G +G++ + CD CG F + L HQ VH G++ +
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG-KLTG 146
+G++ + C CGK F S + H RVH G K +G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSG 42
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 177 GKAFSRKSFVTTHMRVHTG-KLTG 199
GK F S + H RVH G K +G
Sbjct: 19 GKNFCYISALRIHQRVHMGEKCSG 42
Score = 32.2 bits (74), Expect = 0.021
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
C C K +L IH+R+H G++
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++ + CD CG F + +R H++ H
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 56.8 bits (138), Expect = 4e-11
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQ-PVHTGQRKYNCT 121
G TG++PY C CG F +L++H HTG++ +
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 51.8 bits (125), Expect = 3e-09
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMR-VHTG 142
TG++ Y C CGKAF + + + H R HTG
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 29.1 bits (66), Expect = 0.26
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 30/64 (46%)
Query: 135 THMRVHTGKLTGKFGQKMSALSGTAFAVE--YEIIQECLFAKNGGKAFSRKSFVTTHMR- 191
+ TG + YE EC GKAF + + + H R
Sbjct: 2 SSGSSGTG--------------------KKPYEC-IEC------GKAFIQNTSLIRHWRY 34
Query: 192 VHTG 195
HTG
Sbjct: 35 YHTG 38
Score = 25.6 bits (57), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRH-RKKH 334
+PY+C CG F Q + RH R H
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 56.4 bits (137), Expect = 5e-11
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYN 119
G++PY CD CG F K +L+ H VHTG +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 55.3 bits (134), Expect = 1e-10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C CGKAFS+K + H+RVHTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
P+ C C K K SL +H R+HTG P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.1 bits (79), Expect = 0.004
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAFS+K + H+RVHTG
Sbjct: 18 GKAFSQKGSLIVHIRVHTG 36
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY CD CG F+Q G + H + H
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 58.1 bits (140), Expect = 5e-11
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 83 IHTGQRPYICDWCGVGFRSKANLLQH-QPVHTGQRKY--------NCTVCGKAFSRKSFV 133
I Q C F + L+ H H G + C GK+F K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 134 TTHMRVHTG 142
H+RVHTG
Sbjct: 79 VNHIRVHTG 87
Score = 52.7 bits (126), Expect = 4e-09
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWC----CRFCNKRMMTKLSLGIHERIHTG 86
C TF ELV H+ EH +++ C C K K L H R+HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 87 QRPYIC 92
++
Sbjct: 88 EKSGPS 93
Score = 49.6 bits (118), Expect = 6e-08
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 57 SESSPWCCRFCNKRMMTKLSLGIH-ERIHTGQRP---YICDW-----CGVGFRSKANLLQ 107
+ C++ T L H H G ++C W G F++K L+
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 108 HQPVHTGQRKYNCT 121
H VHTG++ +
Sbjct: 81 HIRVHTGEKSGPSS 94
Score = 43.8 bits (103), Expect = 5e-06
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 111 VHTGQRKYNCTVCGKAFSRKSFVTTHM-RVHTGKLTGKFGQKMSALSGTAFAVEYEII-Q 168
+ Q C + FS + TH+ H G + +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN---------------NHVCYWE 63
Query: 169 ECLFAKNGGKAFSRKSFVTTHMRVHTG 195
EC GK+F K + H+RVHTG
Sbjct: 64 EC---PREGKSFKAKYKLVNHIRVHTG 87
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 8e-11
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
G G++ + C C + F ++L HQ VH G++ +
Sbjct: 1 GSSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 54.1 bits (131), Expect = 4e-10
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ + C C FS+ S + H VH G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
W CR C+ SL +H+ +H G++P
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
FS+ S + H VH G
Sbjct: 19 DMCFSQASSLRLHQNVHVG 37
Score = 30.2 bits (69), Expect = 0.11
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++ + C C F+Q +R H+ H
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C +CG F + +H+R+HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 50.6 bits (122), Expect = 6e-09
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
G++PY C+ CG FR L H +HTG
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 35.9 bits (84), Expect = 9e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
P+ C C R +L H RIHTG P
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.0 bits (79), Expect = 0.004
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
G F + +H+R+HTG
Sbjct: 18 GTRFRHLQTLKSHLRIHTG 36
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C++CG +F + ++ H + H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 81 ERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
+G+ PY C CG F K L+ HQ H G+ +
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 52.9 bits (128), Expect = 8e-10
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 109 QPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G+ Y C+ CGKAF+RK + +H R H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 36.3 bits (85), Expect = 7e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K K L H+R H G+
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GKAF+RK + +H R H G
Sbjct: 17 GKAFNRKDQLISHQRTHAG 35
Score = 27.5 bits (62), Expect = 1.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ PY+C CG F + + H++ H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 55.0 bits (133), Expect = 2e-10
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 78 GIHERIHTGQRPYICDW--CGVGFRSKANLLQHQPVHTGQRKYNCT 121
G TG++P+ C W CG F L +H+ H+G + +
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 45.8 bits (109), Expect = 3e-07
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 108 HQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
TG++ + CT CG FSR ++ H R H+G
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C + C R L H R H+G +P
Sbjct: 12 PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.099
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 306 HHCDRPYDCDV--CGAKFTQVGDMRRHRKKH 334
++P+ C CG +F++ ++ RHR+ H
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 29.6 bits (67), Expect = 0.18
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
G FSR ++ H R H+G
Sbjct: 21 GWRFSRSDELSRHRRSHSG 39
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.1 bits (131), Expect = 3e-10
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G++ Y C CG F + + + H+ +HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYN 119
G++PY C+ CG F A+L H +HTG +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
P+ C C R + L H IHTG P
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 34.0 bits (79), Expect = 0.004
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
G F + + + H+ +HTG
Sbjct: 18 GARFVQVAHLRAHVLIHTG 36
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C+ CGA+F QV +R H H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 4e-10
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
G TG++P+ C CG+ F +L +H H
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 53.4 bits (129), Expect = 6e-10
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
TG++ + C CG FS + H+R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYICD 93
P+ C+ C SL H R H P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 32.6 bits (75), Expect = 0.014
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
G FS + H+R H
Sbjct: 19 GMNFSWSCSLFKHLRSHER 37
Score = 29.5 bits (67), Expect = 0.22
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C CG F+ + +H + H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 53.3 bits (129), Expect = 7e-10
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 81 ERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCT 121
+G++P+ C C F SK+ LL HQ H ++ +
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 52.9 bits (128), Expect = 1e-09
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 111 VHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ + C+ C KAFS KS++ H + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C K +K L +H++ H ++P
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
KAFS KS++ H + H
Sbjct: 17 EKAFSSKSYLLVHQQTHAE 35
Score = 26.0 bits (58), Expect = 3.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C C F+ + H++ H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 53.2 bits (127), Expect = 1e-09
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 90 YICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
YIC+ CG+ + + L +H HT R Y+CT C +F K +T HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 52.4 bits (125), Expect = 2e-09
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK 117
C C R L H R HT RPY C +C F++K NL +H +K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 38.9 bits (90), Expect = 1e-04
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 25/79 (31%)
Query: 117 KYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKFGQKMSALSGTAFAVEYEIIQECLFAKNG 176
KY C CG + S + H+R HT C
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYH-------------------CTYC------ 35
Query: 177 GKAFSRKSFVTTHMRVHTG 195
+F K +T HM+
Sbjct: 36 NFSFKTKGNLTKHMKSKAH 54
Score = 31.6 bits (71), Expect = 0.048
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
H RPY C C F G++ +H K
Sbjct: 24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.4 bits (60), Expect = 1.5
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTG 86
C C K S L +H+ R H ++ P+ C +CN TK +L H +
Sbjct: 4 CEECGIRXKKPSMLKKHI-RTH----TDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 25.4 bits (55), Expect = 7.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
G + S + H+R HT
Sbjct: 8 GIRXKKPSMLKKHIRTHTDV 27
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 54.4 bits (130), Expect = 1e-09
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 33/96 (34%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKAN------------------------------- 104
S ++ I TG + C C + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 105 --LLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMR 138
LL+ + Q+ C CG +F ++ HM
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 54.4 bits (130), Expect = 2e-09
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 14 NLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMT 73
+ + G F C C + EL H+ +
Sbjct: 6 SGKLYGSIFTGASKFR-CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 74 KLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQH 108
K SL E Q+ C +CG F S +L H
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 46.7 bits (110), Expect = 9e-07
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 101 SKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRV--HTGKLTGKFGQKMSALSGT 158
S ++ + + TG K+ C C A+ +T HM H +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 159 AF------AVEYEIIQECLFAKNGGKAFSRKSFVTTHMR 191
E Q+ L G +F ++ HM
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 31.3 bits (70), Expect = 0.21
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRK--KHDENGGSAKDK 344
+ C C A + + ++ H H + D
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54
Score = 29.3 bits (65), Expect = 0.86
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ C CG F + D+ H K
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 53.4 bits (127), Expect = 3e-09
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 50 REHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQ 109
P + CR CN ++ + L G HER+ + +C +C + F S +H+
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 110 PVHTGQRKYNCTVCGKAFSRKSFVTTH-MRVHT 141
+K C C + F + H + VH
Sbjct: 63 -SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 40.3 bits (93), Expect = 1e-04
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
C +C E H N C +C+ R + HE +
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAV-------CPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 91 ICDWCGVGFRSKANLLQHQ 109
C C F+S ++ +HQ
Sbjct: 71 TCLECMRTFKSSFSIWRHQ 89
Score = 28.7 bits (63), Expect = 1.3
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 305 DHHCDRPYDCDVCGAKFTQVGDMRRHRKK-HDENGGSAKDKPGA 347
+ C C F + RH+ + H++N + P +
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 81 ERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYN 119
+GQR Y C CG FR K +L H+ +HTG +
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 50.6 bits (122), Expect = 5e-09
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+GQR Y C CGK+F +K +T H R+HTG
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
+ C+ C K K SL +HERIHTG P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 168 QECLFAKNGGKAFSRKSFVTTHMRVHTG 195
QEC GK+F +K +T H R+HTG
Sbjct: 14 QEC------GKSFRQKGSLTLHERIHTG 35
Score = 27.9 bits (63), Expect = 0.56
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
R Y+C CG F Q G + H + H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 49.6 bits (119), Expect = 1e-08
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
G+ Y C CGK+F+++ + H R +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 48.4 bits (116), Expect = 4e-08
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKY 118
G+ PY+C CG F + +L HQ +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
P+ C C K + SL +H+R + P
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 32.6 bits (75), Expect = 0.014
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK+F+++ + H R +
Sbjct: 18 GKSFTQRGSLAVHQRSCSQ 36
Score = 31.1 bits (71), Expect = 0.045
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ PY C CG FTQ G + H++
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 49.2 bits (118), Expect = 2e-08
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 82 RIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNC 120
+G++PY C C F L+QHQ +HT + +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.9 bits (117), Expect = 2e-08
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+G++ Y+C C + FS + + H ++HT K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 31.1 bits (71), Expect = 0.041
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
+ FS + + H ++HT K
Sbjct: 17 KETFSDNNRLVQHQKMHTVK 36
Score = 27.7 bits (62), Expect = 0.69
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
++PY C C F+ + +H+K H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 27.7 bits (62), Expect = 0.77
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRPYIC 92
P+ C C + L H+++HT +
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.2 bits (112), Expect = 1e-07
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 107 QHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
G+ + C+ C + F++++++ H R H K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 44.5 bits (105), Expect = 8e-07
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
G G+ P+ C C F + L+QH+ H +
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 30.6 bits (69), Expect = 0.069
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ P+ C C FTQ + +H + H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.8 bits (67), Expect = 0.13
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 177 GKAFSRKSFVTTHMRVHTGK 196
+ F++++++ H R H K
Sbjct: 19 DRVFTQRNYLVQHERTHARK 38
Score = 27.5 bits (61), Expect = 0.99
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQRP 89
P+ C C++ + L HER H +
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 46.2 bits (110), Expect = 2e-07
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 108 HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVH 140
TG + + C C ++FSR + H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.5 bits (64), Expect = 0.41
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+P+ C C F++ + HRK+H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.4 bits (56), Expect = 5.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 177 GKAFSRKSFVTTHMRVH 193
++FSR + H + H
Sbjct: 18 DRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 47.6 bits (112), Expect = 5e-07
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPY 90
H+ E ++ +L +R + R+ N +++ + S +
Sbjct: 22 IHVTLEELKRYHQLTPEQKR---LIRAIVKTLIH---NPQLLDESSYLYRLLASKAISQF 75
Query: 91 ICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTHMR 138
+C C + F S +L QH C VC K F+ H+
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVC 121
Score = 37.6 bits (86), Expect = 0.002
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 1 MWPRGFRGFRQVINLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRS 57
+ P F ++L +H R C +CK+ F + H+ ++HNI S
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCKKEFTSTDSALDHVCKKHNICVS 129
Score = 33.4 bits (75), Expect = 0.053
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 67 CNKRMMTKLSLGIHERIHTGQRPYICD----WCGVGFRSKANLLQHQPVHTGQRKYNCTV 122
+ + H+ +R +++ L ++ C +
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 123 CGKAFSRKSFVTTHMRVHT 141
C FS + H+R
Sbjct: 80 CLMPFSSSVSLKQHIRYTE 98
Score = 28.4 bits (62), Expect = 2.7
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 285 VFQAEFSKENDKLLSYLEFCDHHCDRPYDCDVCGAKFTQVGDMRRHRKKH 334
+ + E+ L L + C +C F+ +++H +
Sbjct: 51 IHNPQLLDESSYLYRLLA---SKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.9 bits (106), Expect = 7e-07
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 78 GIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVC 123
G ++ C+ CG FR +L +H+ H+G++ Y+
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.8 bits (90), Expect = 1e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+++ C +CGK F + H H+G
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 36.8 bits (85), Expect = 4e-04
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 56 RSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWC 95
C C K L H+ H+G++PY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.011
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+ C++CG F V + RH+ H
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.1 bits (57), Expect = 3.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F + H H+G
Sbjct: 19 GKIFRDVYHLNRHKLSHSG 37
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.1 bits (103), Expect = 8e-05
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 110 PVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLTGKF 148
P + Y C VC + H+ H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Score = 38.3 bits (88), Expect = 0.006
Identities = 8/59 (13%), Positives = 14/59 (23%)
Query: 54 IPRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVH 112
+ S + + + + Y C C S +L H H
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.0 bits (69), Expect = 0.96
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHDENGGSA 341
Y C VC A D+ H H +G
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASHGLHGNMT 210
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 36.7 bits (84), Expect = 4e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGKLT 145
+G+R + C +C AF+ K+ H++VHT L+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
Score = 36.3 bits (83), Expect = 6e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHT 113
+G+RP++C C F +KAN +H VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.3 bits (65), Expect = 0.16
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKHDE 336
RP+ C +C + FT + RH K H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTG 142
R + C VC +AF+R+ + H R HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 28.1 bits (63), Expect = 0.42
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
R ++C+ C F + +L +H HT ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 0.86
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
+ C C + + L H R HT ++
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 1.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
R + C+VC F + ++RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.3 bits (80), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTG 142
+G++ Y+C VCG F RK ++ H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.8 bits (71), Expect = 0.028
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 306 HHCDRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDKP 345
++PY C VCG +F + M H + HD G K P
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--GSVGKSGP 42
Score = 28.0 bits (61), Expect = 0.66
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
+G++PY C CG+ F+ K + H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 34.8 bits (79), Expect = 0.002
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTG 142
R Y+C+VCGK FS K + TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.8 bits (61), Expect = 0.56
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
RPY C VCG +F+ M H + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 27.5 bits (60), Expect = 0.83
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTG 114
RPY C CG F K + H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTG 86
P+ C C KR K + H R+HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.9 bits (81), Expect = 0.002
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 116 RKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
R + CT CGK F+R + H R HTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 31.4 bits (72), Expect = 0.024
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 88 RPYICDW--CGVGFRSKANLLQHQPVHTGQR 116
RP++C W CG F L +H+ HTG++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.1 bits (66), Expect = 0.20
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 310 RPYDCDV--CGAKFTQVGDMRRHRKKH 334
RP+ C CG +FT+ +++RH++ H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.6 bits (62), Expect = 0.62
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK F+R + H R HTG
Sbjct: 11 GKRFTRSDELQRHKRTHTG 29
Score = 27.2 bits (61), Expect = 0.92
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 61 PWCCRF--CNKRMMTKLSLGIHERIHTGQR 88
P+ C + C KR L H+R HTG++
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHT 141
++ + C C K FS ++T H R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.5 bits (60), Expect = 1.1
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 84 HTGQRPYICDWCGVGFRSKANLLQHQPVHT 113
++ + C+ C F L QH+ +HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.8 bits (53), Expect = 8.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 168 QECLFAKNGGKAFSRKSFVTTHMRVHT 194
++C K FS ++T H R+HT
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.3 bits (79), Expect = 0.003
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 113 TGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
++++ C + CGK + + S + H+R HTG
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
Score = 27.7 bits (62), Expect = 0.74
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 85 TGQRPYICDW--CGVGFRSKANLLQHQPVHTGQR 116
++ +IC CG + ++L H HTG+R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.3 bits (61), Expect = 1.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 177 GKAFSRKSFVTTHMRVHTG 195
GK + + S + H+R HTG
Sbjct: 17 GKVYGKTSHLRAHLRWHTG 35
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 34.2 bits (78), Expect = 0.003
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 309 DRPYDCDV--CGAKFTQVGDMRRHRKKHDENG 338
DRPY CD C F + D+ RH+K H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 37.1 bits (85), Expect = 0.006
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 55 PRSESSPWCCRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTG 114
P W KR+ + IH + G++ + + +L
Sbjct: 174 PGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI----- 228
Query: 115 QRKYNCTVCGK 125
+ GK
Sbjct: 229 --HLSVLRQGK 237
Score = 29.8 bits (66), Expect = 1.5
Identities = 3/54 (5%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 94 WCGVGFRSKANLLQ----HQPVHTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
W + + + + H+ + G+++ + + + + +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 0.007
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 80 HERIHTGQRPYICDWCGVGFRSKANLLQH-QPVHTGQRK---YNCTVCGKAFSRKSFVTT 135
+++ + Y C +C H H Y C C R ++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 136 H-MRVHTG 142
H ++ H G
Sbjct: 69 HNLKYHPG 76
Score = 30.1 bits (67), Expect = 0.36
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 44 LVRHLEREHNIPRSESSPWCCRFCNKRMMTKLSLGIH-ERIHTGQR---PYICDWCGVGF 99
+ H + + + C++C + H + H Y+C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 100 RSKANLLQHQP-VHTGQRKYNCTV 122
+ L +H H G+ + T+
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLTM 84
Score = 29.4 bits (65), Expect = 0.79
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 14 NLLKHRREHGGNLSFDNCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKRMMT 73
+ H +++ C C + H++ EH SS + C CN
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKR 62
Query: 74 KLSLGIH-ERIHTGQRPYICD 93
+L H + H G+ +
Sbjct: 63 YDALSEHNLKYHPGEENFKLT 83
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (74), Expect = 0.014
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQRK 117
+ ++ + C CG F +L++HQ +H GQ+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 26.3 bits (57), Expect = 2.8
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ ++ + C CG+ F + + H +H G+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.2 bits (72), Expect = 0.023
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 86 GQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+ C CG FR + L++HQ +H G+
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 30.3 bits (67), Expect = 0.12
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 114 GQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ C CGK F S + H +H G+
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.6 bits (71), Expect = 0.026
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+PY+C C F L +H +HTG++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.054
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 61 PWCCRFCNKRMMTKLSLGIHERIHTGQR 88
P+ C C ++ +L H RIHTG++
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.071
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ Y C C + F+ + H+R+HTG+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 27.0 bits (59), Expect = 1.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+PY C C +F G ++RH + H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.030
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 120 CTVCGKAFSRKSFVTTHMRVHTGK 143
C +CGKAF++ S + H+R HTG+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGE 28
Score = 26.3 bits (57), Expect = 1.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+P C CG F ++L+ H HTG++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.7 bits (53), Expect = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKH 334
+P C +CG FTQ + H ++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.062
Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 76/293 (25%)
Query: 157 GTAFAVEYEIIQECLFAKNGGKAFSRKSFVTTHMRVHTGKLTGKFGQKISALSGIRTQ-H 215
+ Y+ + + + + + ++ R++ Q + + R Q +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND------NQVFAKYNVSRLQPY 137
Query: 216 LQIESH-QTTQPQRWAAYRQIGYYGREPIQGFHSNVSINKLSCISQGKGS--KEKKDDEE 272
L++ +P + + G + G GK +
Sbjct: 138 LKLRQALLELRPAKN-----VLIDG---VLGS--------------GKTWVALDVCLSY- 174
Query: 273 NEYGKPEDFIPD-VFQAEFSKEN--DKLLSYLEFCDHHCDRPYDCDVCGAKFTQVGDMRR 329
K + + +F N + +L L+ + D + T D
Sbjct: 175 ----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---------TSRSD--- 218
Query: 330 HRKKHDENGGSAKDKPGAYNKTDRYSK-LTYLLTVTEHKLVIQHFSLVQMNFNSPSELIL 388
H S + + K+ Y L LL V ++ F N + IL
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAF-----NLSCK---IL 269
Query: 389 LTCSEPTIFTNFNVKTQILNLTSTFHLF-----HPLTKYNLSEQL--WVKLTI 434
LT T F T L+ +T H+ LT + L ++
Sbjct: 270 LT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Score = 31.7 bits (71), Expect = 0.53
Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 49/187 (26%)
Query: 227 QRWAAYRQIGYYG--------REPIQGFHSNV--SINKLSCISQGKGSKEKKDD------ 270
++ I E H ++ N D
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 271 ----EENEYGKPEDFIPDVFQAEFSKENDKLLSYLEFCDHHCDRPYDCDVCGAKFTQVGD 326
+ E+ + VF D +LE H ++ G+ +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL-------D--FRFLEQKIRHDSTAWNA--SGSILNTLQQ 526
Query: 327 MRRHRK---KHDENGGSAKDKPGAYNKTDRYSK--LTYLLTVTEHKLVIQHFSLVQMNFN 381
++ ++ +D K +R L +L + E+ + ++ L+++
Sbjct: 527 LKFYKPYICDND-------------PKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 382 SPSELIL 388
+ E I
Sbjct: 574 AEDEAIF 580
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.5 bits (71), Expect = 0.084
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTT 135
HE R +C C + L +H+ + G R C CG+ K T
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNVLVKDL-KT 60
Query: 136 HMRVHTGK 143
H V +
Sbjct: 61 HPEVCGRE 68
Score = 30.0 bits (67), Expect = 0.23
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
C+ C+ + L HE + G R +C CG K +L H V +
Sbjct: 20 CQHCDLELSIL-KLKEHED-YCGARTELCGNCGRNVLVK-DLKTHPEVCGRE 68
Score = 26.1 bits (57), Expect = 6.3
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 295 DKLLSYLEFCDH--HCD-RPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDKPGA 347
D LS L+ +H +C R C CG + + K H E G P +
Sbjct: 24 DLELSILKLKEHEDYCGARTELCGNCGRNV-----LVKDLKTHPEVCGREGSGPSS 74
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.13
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 106 LQHQPVHTGQRKYNCTV--CGKAFSRKSFVTTHMRVHTG 142
+ + + C C K F R+ + +H++ H
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 25.6 bits (56), Expect = 5.3
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 169 ECLFAKNGGKAFSRKSFVTTHMRVHTG 195
ECLF K F R+ + +H++ H
Sbjct: 20 ECLF-PGCTKTFKRRYNIRSHIQTHLE 45
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (69), Expect = 0.15
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 90 YICDWCG-VGFRSKANLLQHQPV-HTGQRKYNCTVCGKAFSRKSFVTTH-MRVHTGKLTG 146
+C C V ++ L +H V Q C C K F K+ + H M H+ K +
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84
Query: 147 KFGQKMS 153
+
Sbjct: 85 AEASEGG 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.17
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 403 KTQILNLTSTFHLFHPLTKYNLSEQLWVKLTI 434
K + L ++ L+ + + L +K T+
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKATM 46
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.26
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 85 TGQRPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+ +PY C C KANL H HTG++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.3 bits (62), Expect = 0.46
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 113 TGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ + Y C C A + K+ + H+R HTG+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 25.2 bits (54), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 57 SESSPWCCRFCNKRMMTKLSLGIHERIHTGQR 88
S P+ C C+ K +L +H R HTG++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 28.5 bits (63), Expect = 0.26
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKKHD 335
+PY C+ CG +F Q + H + HD
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.40
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 56 RSESSPWCCRFCNKRMMTKLSLGIHERIHTGQR 88
S + C +CNK K SL H RIHT ++
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.5 bits (60), Expect = 0.82
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
+ + C C K F K + H+R+HT +
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.49
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 87 QRPYICDWCGVGFRSKANLLQHQPVHTGQ 115
+ ++CD CG F+SK L H+ +HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.5 bits (60), Expect = 0.93
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENG 338
+ + CD+CG KF G ++ H+ H +G
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTADG 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.63
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 90 YICDWCG-VGFRSKANLLQHQPVHTGQRKYNCTVCGKAFSRKSFVTTH-MRVHTGKLTGK 147
C C VG ++ L +H Q + C CGK + + H M H +G
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 27.6 bits (61), Expect = 0.72
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 117 KYNCTVCGKAFSRKSFVTTHMRVHTGK 143
K+ C C K F R +T H+ +H K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 309 DRPYDCDV--CGAKFTQVGDMRRHRKKHD 335
D+P+ C CG +FT + H+ KH+
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 1.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 117 KYNCTVCGKAFSRKSFVTTHMRVHTGK 143
K+ C C K F R ++ H+ +H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELL 28
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 1.3
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMR-VHTGKL 144
+ Y C +C +AF+R+ + H + +H+G L
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 25.2 bits (55), Expect = 5.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHRKK 333
+ Y C +C FT+ + RH +K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.4 bits (60), Expect = 1.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 309 DRPYDCDVCGAKFTQVGDMRRHRKKHDENGGSAKDK 344
D+PY CD+CG ++ + H +DK
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDK 40
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.2 bits (64), Expect = 1.4
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 2/77 (2%)
Query: 310 RPYDCDVCGAKFTQVGDMRRHR--KKHDENGGSAKDKPGAYNKTDRYSKLTYLLTVTEHK 367
C VC A H +KH + +++ +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 368 LVIQHFSLVQMNFNSPS 384
+ + M F+SP
Sbjct: 91 DRSKCCPVCNMTFSSPV 107
Score = 26.8 bits (58), Expect = 8.7
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 19 RREHGGNLSFDNCHICKETFYKHSELVRHLE-REH--NIPRSESSPWCCRFCNKRMMTKL 75
RE+ S C +C S+ + H + R+H + R + +
Sbjct: 23 IRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA 82
Query: 76 SLGIHERIHTGQRPYICDWCGVGFRSKANLLQH 108
I + R C C + F S H
Sbjct: 83 PAEISD---GEDRSKCCPVCNMTFSSPVVAESH 112
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 118 YNCTVCGKAFSRKSFVTTHMRVH 140
Y C +C ++F KS ++ H RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.8 bits (58), Expect = 1.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
+P+ C C RSK+NL H H+ ++
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.9
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 352 DRYSKLTYLLTVTEHKLVIQHF-----SLVQMNFNSPSELILLTCSE---PTIFT 398
+ YS + + V + F F S L+ T + P +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQPALTL 1738
Score = 28.1 bits (62), Expect = 8.4
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 336 ENGGSAKDKPGAYNKTDRYSKLTYLLTVTEHKLVIQHFSLVQMNFNSPSELILL 389
+ +A+D +N+ D + K TY FS++ + N+P L +
Sbjct: 1637 KTSKAAQD---VWNRADNHFKDTY------------GFSILDIVINNPVNLTIH 1675
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 29.4 bits (66), Expect = 2.8
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 275 YGKPEDFIPDVFQAEFSKENDKLLSYLEF 303
+ +PE+++PD F + + LL Y+ +
Sbjct: 386 FDRPEEYVPD----RFVGDGEALLKYVWW 410
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.0 bits (56), Expect = 3.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 116 RKYNCTVCGKAFSRKSFVTTHMRVH 140
R Y+C VC K+FS + +H++ +
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTN 32
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.0 bits (64), Expect = 3.4
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 102 KANLLQHQPVHTGQ-----RKYNCTVCGKAFSRKSFVTTHMR 138
A ++ Y C VC FS S ++ H+R
Sbjct: 96 PAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLR 137
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 28.3 bits (64), Expect = 5.0
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 5/29 (17%)
Query: 159 AFAVE-----YEIIQECLFAKNGGKAFSR 182
AF + +EI + F R
Sbjct: 276 AFTSDHIETLHEIDLGVIGESEYKDKFKR 304
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding,
helix-turn-helix, gene regulation; NMR {Homo sapiens}
Length = 82
Score = 26.1 bits (57), Expect = 6.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 112 HTGQRKYNCTVCGKAFSRKSFVTTHMRVHTGK 143
G+RK + GK + R + ++++ TGK
Sbjct: 26 PCGRRKIILSDEGKMYGRNELIARYIKLRTGK 57
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 28.1 bits (62), Expect = 7.1
Identities = 7/37 (18%), Positives = 9/37 (24%), Gaps = 6/37 (16%)
Query: 87 QRPYICDWCGVGFRSKANLL------QHQPVHTGQRK 117
Q D+ V F L V G +
Sbjct: 482 QYTQDLDYLSVSFGYTGELWRFWQRCGFVLVRMGNHR 518
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.5 bits (60), Expect = 7.4
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 30 NCHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNK 69
C IC++ +L +HN W C CN
Sbjct: 139 TCPICEKRSIVGV--TANLVHDHNHDTGWGREWICDSCNT 176
Score = 27.2 bits (59), Expect = 8.7
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 31 CHICKETFYKHSELVRHLEREHNIPRSESSPWCCRFCNKR---MMTKLSLGIHERIHTGQ 87
C C++ ++ I + S + C C KR +T + H
Sbjct: 107 CRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWG 166
Query: 88 RPYICDWC 95
R +ICD C
Sbjct: 167 REWICDSC 174
>3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective,
mutant, directed evolution; 1.50A {Aspergillus niger}
PDB: 1qo7_A 3g0i_A*
Length = 408
Score = 27.7 bits (62), Expect = 7.6
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 2 WPRGFRGFRQVINLLKHRREHGGNLSFD 29
WP F F ++ L + L F
Sbjct: 118 WPGSFVEFYPILQLFREEYTPET-LPFH 144
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 24.7 bits (54), Expect = 8.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 88 RPYICDWCGVGFRSKANLLQHQPVHTGQR 116
R Y C +C FRS L H VH R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 8.2
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 64 CRFCNKRMMTKLSLGIHERIHTGQRPYICDWCGVGFRSKANLLQHQPVHTGQ--RKYN 119
C C I ER G +C CG+ +L + V T R ++
Sbjct: 24 CPECKVY-----PPKIVERFSEGD--VVCALCGL-------VLSDKLVDTRSEWRTFS 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.428
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,461,244
Number of extensions: 368786
Number of successful extensions: 2551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 867
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)