Query psy8252
Match_columns 129
No_of_seqs 110 out of 1061
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:36:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04415 NDPk7A Nucleoside diph 100.0 2.2E-44 4.7E-49 251.1 12.8 118 4-122 14-131 (131)
2 COG0105 Ndk Nucleoside diphosp 100.0 1.3E-44 2.7E-49 248.3 11.3 118 3-124 17-134 (135)
3 PRK14542 nucleoside diphosphat 100.0 3E-44 6.6E-49 251.9 12.5 121 3-127 16-136 (137)
4 PRK14541 nucleoside diphosphat 100.0 1.3E-43 2.8E-48 249.5 12.4 120 3-126 16-135 (140)
5 cd04412 NDPk7B Nucleoside diph 100.0 2.8E-43 6.1E-48 246.3 13.0 119 3-122 15-134 (134)
6 cd04414 NDPk6 Nucleoside dipho 100.0 4.3E-43 9.3E-48 245.7 12.8 120 4-123 16-135 (135)
7 PRK14545 nucleoside diphosphat 100.0 4.3E-43 9.2E-48 246.7 12.6 120 3-126 18-137 (139)
8 cd04418 NDPk5 Nucleoside dipho 100.0 4.6E-43 1E-47 244.7 12.6 118 5-123 15-132 (132)
9 PTZ00093 nucleoside diphosphat 100.0 4.2E-43 9.1E-48 249.2 12.4 120 3-126 17-136 (149)
10 PRK14540 nucleoside diphosphat 100.0 7.1E-43 1.5E-47 244.3 12.5 118 3-124 17-134 (134)
11 PLN02931 nucleoside diphosphat 100.0 9.9E-43 2.1E-47 252.8 12.5 122 3-125 44-165 (177)
12 cd00595 NDPk Nucleoside diphos 100.0 1.4E-42 3E-47 242.4 12.5 119 3-122 15-133 (133)
13 cd04416 NDPk_TX NDP kinase dom 100.0 1.9E-42 4.1E-47 241.5 12.6 118 4-122 15-132 (132)
14 PRK00668 ndk mulitfunctional n 100.0 7.6E-42 1.6E-46 239.1 12.1 118 3-124 16-133 (134)
15 cd04413 NDPk_I Nucleoside diph 100.0 1.3E-41 2.8E-46 236.8 12.2 116 3-122 15-130 (130)
16 PLN02619 nucleoside-diphosphat 100.0 8.2E-42 1.8E-46 256.0 11.5 120 3-126 103-222 (238)
17 PRK14543 nucleoside diphosphat 100.0 1.4E-41 3E-46 245.2 11.8 120 3-126 20-154 (169)
18 PF00334 NDK: Nucleoside dipho 100.0 1.1E-40 2.4E-45 233.1 11.6 121 3-127 15-135 (135)
19 KOG0888|consensus 100.0 7.1E-41 1.5E-45 237.5 9.1 124 3-127 20-143 (156)
20 smart00562 NDK These are enzym 100.0 3.3E-39 7.2E-44 225.7 12.6 119 3-125 15-133 (135)
21 PRK14544 nucleoside diphosphat 100.0 5.4E-39 1.2E-43 234.0 12.3 121 3-127 18-181 (183)
22 TIGR03738 PRTRC_C PRTRC system 81.6 0.83 1.8E-05 28.1 1.2 29 26-59 21-49 (66)
23 PF14454 Prok_Ub: Prokaryotic 79.9 1.6 3.5E-05 26.8 2.0 28 27-59 23-50 (65)
24 KOG4132|consensus 66.8 15 0.00033 28.2 4.9 114 2-126 141-259 (260)
25 PF03807 F420_oxidored: NADP o 63.9 29 0.00063 21.6 5.3 74 2-75 7-81 (96)
26 PF10727 Rossmann-like: Rossma 39.9 60 0.0013 22.2 4.0 70 2-76 18-88 (127)
27 KOG1431|consensus 38.2 54 0.0012 25.6 3.8 52 3-56 11-68 (315)
28 PRK06476 pyrroline-5-carboxyla 37.8 1.7E+02 0.0036 21.9 6.5 37 2-38 8-44 (258)
29 PF06130 PduL: Propanediol uti 36.2 69 0.0015 19.8 3.5 20 19-38 4-23 (71)
30 PRK07680 late competence prote 33.8 1.7E+02 0.0037 22.1 6.1 36 2-37 8-44 (273)
31 PF13076 DUF3940: Protein of u 33.8 47 0.001 18.0 2.1 32 8-39 5-37 (38)
32 COG1724 Predicted RNA binding 32.2 62 0.0013 19.9 2.7 20 6-25 9-28 (66)
33 PF03446 NAD_binding_2: NAD bi 31.0 1.4E+02 0.003 20.7 4.9 65 3-72 10-74 (163)
34 COG1504 Uncharacterized conser 30.3 1.3E+02 0.0027 20.6 4.2 52 27-78 48-110 (121)
35 PF04339 DUF482: Protein of un 29.0 1.3E+02 0.0028 24.5 4.9 54 11-64 193-258 (370)
36 KOG0352|consensus 27.7 87 0.0019 26.7 3.7 64 20-97 111-175 (641)
37 PF15120 DUF4561: Domain of un 27.6 42 0.00092 24.4 1.7 28 66-100 94-121 (171)
38 PF00107 ADH_zinc_N: Zinc-bind 27.3 1.6E+02 0.0034 19.0 4.4 73 5-78 2-81 (130)
39 PF03800 Nuf2: Nuf2 family; I 24.6 45 0.00096 23.0 1.3 34 6-40 15-48 (146)
40 PF07576 BRAP2: BRCA1-associat 24.0 66 0.0014 21.6 2.0 17 29-45 63-79 (110)
41 cd04906 ACT_ThrD-I_1 First of 23.6 1.1E+02 0.0024 18.9 2.9 28 3-36 53-80 (85)
42 PRK14165 winged helix-turn-hel 23.1 3E+02 0.0065 20.7 5.6 33 6-39 39-75 (217)
43 PRK12483 threonine dehydratase 21.0 3.5E+02 0.0076 23.1 6.2 54 9-79 402-464 (521)
44 PF06399 GFRP: GTP cyclohydrol 20.9 1.2E+02 0.0026 19.4 2.6 21 6-26 52-72 (83)
45 PF11407 RestrictionMunI: Type 20.5 56 0.0012 24.2 1.1 15 114-128 162-176 (202)
46 PF01408 GFO_IDH_MocA: Oxidore 20.4 2.4E+02 0.0052 17.8 4.5 35 6-41 76-110 (120)
47 KOG0030|consensus 20.3 1.2E+02 0.0027 21.6 2.8 30 27-56 120-152 (152)
No 1
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=2.2e-44 Score=251.07 Aligned_cols=118 Identities=39% Similarity=0.594 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhh
Q psy8252 4 IHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYI 83 (129)
Q Consensus 4 ~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~ 83 (129)
.+|+|| ++|+++||.|+++||++||+++|++||..|++++||++|+++|+|||+++|+|.|+|+|++||++|||++|..
T Consensus 14 ~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~ 92 (131)
T cd04415 14 KIGKII-QIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSV 92 (131)
T ss_pred hHHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHH
Confidence 378888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhh
Q psy8252 84 ARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHG 122 (129)
Q Consensus 84 a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~ 122 (129)
|+...|+|||+.||.+.++|+||||||+++|.+|+.+||
T Consensus 93 A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 93 ARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred hhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999997
No 2
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=248.32 Aligned_cols=118 Identities=30% Similarity=0.393 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++++++||+|+.+||+++++++|++||..|+++|||.+|++||+|||+++++|+|+|||+.+|.++|+|+|.
T Consensus 17 ~LIG~Ii-srfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~ 95 (135)
T COG0105 17 GLIGEII-SRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPA 95 (135)
T ss_pred hhHHHHH-HHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcc
Confidence 6899999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRH 124 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~ 124 (129)
.| +|+|||++||.+..+|.||||||+++|++||.+||..
T Consensus 96 ~A---~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 96 NA---APGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred cC---CCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99 8999999999999999999999999999999999964
No 3
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3e-44 Score=251.88 Aligned_cols=121 Identities=28% Similarity=0.384 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|++++||++|+++|+|||+++|+|.|+|||++||+++||++|.
T Consensus 16 ~~~g~Ii-~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~ 94 (137)
T PRK14542 16 KHVGNIL-QRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPK 94 (137)
T ss_pred CchHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCch
Confidence 5789998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||+.||.+.++|+||||||+++|.+|+.+||...++
T Consensus 95 ~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 136 (137)
T PRK14542 95 EA---AAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136 (137)
T ss_pred hC---CCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhhc
Confidence 98 5999999999999999999999999999999999986553
No 4
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.3e-43 Score=249.55 Aligned_cols=120 Identities=30% Similarity=0.401 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||++||++|||++|.
T Consensus 16 ~~~g~Il-~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~ 94 (140)
T PRK14541 16 QLIGAVI-DKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPA 94 (140)
T ss_pred CchHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCch
Confidence 5678999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
.| .|+|||+.||++.++|++|||||+++|.+|+++||...+
T Consensus 95 ~A---~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~ 135 (140)
T PRK14541 95 EA---AEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEE 135 (140)
T ss_pred hC---CCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhh
Confidence 98 599999999999999999999999999999999997744
No 5
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=2.8e-43 Score=246.32 Aligned_cols=119 Identities=26% Similarity=0.321 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCc-ccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCch
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDK-FFYNRLVTQMISGPSEINILARENAITKWRELLGPTKV 81 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~-~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~ 81 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..|.++ +||++|+++|+|||+++|+|.|+|||++||+++||++|
T Consensus 15 ~~~g~Ii-~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p 93 (134)
T cd04412 15 GLLGEIL-QQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDP 93 (134)
T ss_pred CchHHHH-HHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCh
Confidence 3589998 999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhh
Q psy8252 82 YIARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHG 122 (129)
Q Consensus 82 ~~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~ 122 (129)
..|+...|+|||+.||++.++|+|||||++++|.+|+++||
T Consensus 94 ~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 94 EIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred HHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997
No 6
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=4.3e-43 Score=245.67 Aligned_cols=120 Identities=51% Similarity=0.757 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhh
Q psy8252 4 IHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYI 83 (129)
Q Consensus 4 ~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~ 83 (129)
+++++|++.|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|||++||+++||++|..
T Consensus 16 ~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p~~ 95 (135)
T cd04414 16 LALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFR 95 (135)
T ss_pred chHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCChhH
Confidence 45677768899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhc
Q psy8252 84 ARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGR 123 (129)
Q Consensus 84 a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~ 123 (129)
|+...|+|||+.||++.++|++||||+.++|.+|+++||.
T Consensus 96 A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 96 ARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred hccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999983
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.3e-43 Score=246.70 Aligned_cols=120 Identities=32% Similarity=0.392 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..|.+++||++|+++|+|||+++|+|.|+|+|++||+++||++|.
T Consensus 18 ~~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~ 96 (139)
T PRK14545 18 GHIGGIL-DMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNPA 96 (139)
T ss_pred CcHHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCcc
Confidence 5789998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
.| .|+|||+.||++.++|++|||||+++|.+|+.+||...+
T Consensus 97 ~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~ 137 (139)
T PRK14545 97 DA---AEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGRE 137 (139)
T ss_pred cC---CCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCccc
Confidence 98 599999999999999999999999999999999997654
No 8
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=4.6e-43 Score=244.67 Aligned_cols=118 Identities=40% Similarity=0.616 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhhh
Q psy8252 5 HEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYIA 84 (129)
Q Consensus 5 ~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~a 84 (129)
+|+|| ++|+++||+|+++||++||+++|++||..|.+++||++|+++|+|||+++|+|.|+|+|++||+++||++|..|
T Consensus 15 ~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~p~~A 93 (132)
T cd04418 15 AEEIE-DIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKA 93 (132)
T ss_pred HHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCChHHh
Confidence 68888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhc
Q psy8252 85 RFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGR 123 (129)
Q Consensus 85 ~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~ 123 (129)
+...|+|||+.||.+.++|++||||+.++|.+|+.+||.
T Consensus 94 ~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 94 KETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred ccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999983
No 9
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=4.2e-43 Score=249.23 Aligned_cols=120 Identities=26% Similarity=0.343 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..|++++||++|+++|+|||+++|+|.|+|||++||++|||++|.
T Consensus 17 ~~~g~Ii-~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p~ 95 (149)
T PTZ00093 17 GLVGEII-KRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPL 95 (149)
T ss_pred CchHHHH-HHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCcc
Confidence 5789988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
.+ .|+|||+.||++.++|+|||||++++|.+|+++||...+
T Consensus 96 ~a---~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~ 136 (149)
T PTZ00093 96 ES---APGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEE 136 (149)
T ss_pred cc---CCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhh
Confidence 77 799999999999999999999999999999999997643
No 10
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=7.1e-43 Score=244.27 Aligned_cols=118 Identities=31% Similarity=0.422 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..|.+++||+.|+++|+|||+++|+|.|+|+|++||++|||++|.
T Consensus 17 ~~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p~ 95 (134)
T PRK14540 17 KLIGKII-QRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPA 95 (134)
T ss_pred CchHHHH-HHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCcc
Confidence 5679988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRH 124 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~ 124 (129)
.| .|+|||+.||.+.++|++||||++++|.+|+++||.+
T Consensus 96 ~a---~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 96 EA---EPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred cC---CCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 88 6999999999999999999999999999999999964
No 11
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=9.9e-43 Score=252.76 Aligned_cols=122 Identities=36% Similarity=0.629 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|||++||++|||++|.
T Consensus 44 ~~~G~Il-~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~ 122 (177)
T PLN02931 44 NYTERIK-EVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDAR 122 (177)
T ss_pred ccHHHHH-HHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChh
Confidence 5678888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHT 125 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~ 125 (129)
.|+...|+|||+.||.+.++|++||||++++|.+|+++||...
T Consensus 123 ~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~ 165 (177)
T PLN02931 123 KAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDV 165 (177)
T ss_pred hhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999753
No 12
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.4e-42 Score=242.44 Aligned_cols=119 Identities=38% Similarity=0.531 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..|.+++||++|+++|+|||+++|+|.|+|||++||+++||++|.
T Consensus 15 ~~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p~ 93 (133)
T cd00595 15 GLLGEII-MRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPE 93 (133)
T ss_pred CcHHHHH-HHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCChh
Confidence 4678988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhh
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHG 122 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~ 122 (129)
.|+...|+|||+.||.+.++|+|||||++++|.+|+.+||
T Consensus 94 ~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 94 IARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred HhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999997
No 13
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=1.9e-42 Score=241.55 Aligned_cols=118 Identities=32% Similarity=0.508 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhh
Q psy8252 4 IHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYI 83 (129)
Q Consensus 4 ~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~ 83 (129)
++|+|| ++|+++||.|+++||++||+++|++||..|.+++||++|+++|+|||+++|+|.|+|+|++||+++||++|..
T Consensus 15 ~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p~~ 93 (132)
T cd04416 15 KKDEIL-EKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEE 93 (132)
T ss_pred HHHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCChHH
Confidence 578888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhh
Q psy8252 84 ARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHG 122 (129)
Q Consensus 84 a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~ 122 (129)
|+...|+|||+.||.+.++|++||||++++|.+|+.+||
T Consensus 94 A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 94 AKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred hhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997
No 14
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=7.6e-42 Score=239.08 Aligned_cols=118 Identities=32% Similarity=0.422 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|||++||++|||++|.
T Consensus 16 ~~~g~Il-~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p~ 94 (134)
T PRK00668 16 GLIGEII-SRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPA 94 (134)
T ss_pred CcHHHHH-HHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCcc
Confidence 4678888 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRH 124 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~ 124 (129)
.+ .|+|||+.||++.++|++||||++++|.+|+.+||..
T Consensus 95 ~a---~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 95 EA---APGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred cc---CCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 66 7999999999999999999999999999999999964
No 15
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.3e-41 Score=236.82 Aligned_cols=116 Identities=32% Similarity=0.407 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|.++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|+|++||++|||++|+
T Consensus 15 ~~~g~Il-~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~~ 93 (130)
T cd04413 15 GLIGEII-SRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPA 93 (130)
T ss_pred CcHHHHH-HHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCcc
Confidence 4678888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhh
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHG 122 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~ 122 (129)
.+ .|+|||+.||++.++|++||||++++|.+|+++||
T Consensus 94 ~a---~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 94 DA---APGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred cc---CCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 76 79999999999999999999999999999999997
No 16
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=8.2e-42 Score=256.04 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|+|+|+|++||++|||++|.
T Consensus 103 glvGeII-~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~GenaV~~~R~LiGpTdP~ 181 (238)
T PLN02619 103 GLISEII-SRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQ 181 (238)
T ss_pred CchHHHH-HHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCcc
Confidence 5689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
.+ .|+|||++||++.++|+|||||++++|.+|+++||...+
T Consensus 182 ~A---~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~e 222 (238)
T PLN02619 182 KS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEE 222 (238)
T ss_pred cc---CCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHh
Confidence 76 799999999999999999999999999999999997543
No 17
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-41 Score=245.16 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhH-----hhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhC
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYS-----EHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~-----~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~G 77 (129)
+++|+|| ++|+++||+|+++||++||+++|++||. +|.+++||++|+++|+|||+++|+|.|+|||++||+++|
T Consensus 20 ~~~G~Ii-~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl~g~naI~~~R~l~G 98 (169)
T PRK14543 20 GLIGNVV-SRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCG 98 (169)
T ss_pred CchHHHH-HHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEEECCCHHHHHHHHhC
Confidence 6789999 9999999999999999999999999995 789999999999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCcccccccC----------CCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 78 PTKVYIARFSHPYSIRGMYGIS----------DTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 78 p~~~~~a~~~~p~slR~~fg~~----------~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
|++|..+ .|+|||+.||.+ .++|+||||||+++|.+|+++||...+
T Consensus 99 pt~p~~a---~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e 154 (169)
T PRK14543 99 STEPKLA---IPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNE 154 (169)
T ss_pred CCCcccc---CCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCccc
Confidence 9999877 799999999997 789999999999999999999997654
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=1.1e-40 Score=233.11 Aligned_cols=121 Identities=36% Similarity=0.503 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|+++||++||+++|++||..+.++++|+.++++|+|||+++|+|+|+|||++||+++||++|+
T Consensus 15 ~~~g~Ii-~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~dp~ 93 (135)
T PF00334_consen 15 GHAGEII-DRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTDPE 93 (135)
T ss_dssp T-HHHHH-HHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSGG
T ss_pred cchHHHH-HHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhhHHHHHhcCCcchh
Confidence 4678888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|++||||++++|.+|+.+||.+..+
T Consensus 94 ~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 94 EA---APGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFEI 135 (135)
T ss_dssp GS---STTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGGS
T ss_pred hh---ccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcccC
Confidence 99 8999999999999999999999999999999999987653
No 19
>KOG0888|consensus
Probab=100.00 E-value=7.1e-41 Score=237.54 Aligned_cols=124 Identities=33% Similarity=0.470 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|++| .+++++||.|++.|+++++++++++||.++++++||+.|+.||+|||++||+|.|.|||+.||+++||++|.
T Consensus 20 ~li~~ii-~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~ 98 (156)
T KOG0888|consen 20 GLIGEII-KRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPA 98 (156)
T ss_pred hhhHHHH-HHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcc
Confidence 5789999 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.|+...|+|||++||.+..+|++|||||.++|++||.+||...++
T Consensus 99 ~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~ 143 (156)
T KOG0888|consen 99 AARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFEL 143 (156)
T ss_pred cccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhh
Confidence 999999999999999999999999999999999999999986544
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=3.3e-39 Score=225.72 Aligned_cols=119 Identities=35% Similarity=0.521 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||.|++.||++||+++|++||..+.++++|++|+++|+|||+++|+|.|+|+|++||+++||++|.
T Consensus 15 ~~~g~Il-~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~~ 93 (135)
T smart00562 15 GLIGEII-SRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPR 93 (135)
T ss_pred ccHHHHH-HHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCChh
Confidence 5678888 999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHT 125 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~ 125 (129)
.+ .|+|||+.||++.++|++||||++++|.+|+.+||...
T Consensus 94 ~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~ 133 (135)
T smart00562 94 EA---APGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPES 133 (135)
T ss_pred hc---CCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCcc
Confidence 55 79999999999999999999999999999999999754
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.4e-39 Score=234.02 Aligned_cols=121 Identities=28% Similarity=0.320 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhh---------------------------------cCcccHHHH
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEH---------------------------------KDKFFYNRL 49 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~---------------------------------~~~~~~~~l 49 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..+ .+++||++|
T Consensus 18 ~~~G~Il-~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~L 96 (183)
T PRK14544 18 GLVGEII-SRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGTDDPVEVGKKVKESL 96 (183)
T ss_pred ccHHHHH-HHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccCCchhHHH
Confidence 5689988 999999999999999999999999999954 678999999
Q ss_pred HhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhhhhhcCCCCcccccccCC----------CCcEEEeCCChhhhhHHhh
Q psy8252 50 VTQMISGPSEINILARENAITKWRELLGPTKVYIARFSHPYSIRGMYGISD----------TRNAAHGSEWLRDYNHEPI 119 (129)
Q Consensus 50 v~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~a~~~~p~slR~~fg~~~----------~~N~vh~Sds~e~a~~e~~ 119 (129)
+++|+|||+++|+|.|+|||++||++|||++|..| .|+|||+.||.+. .+|+|||||++++|.+|++
T Consensus 97 v~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~NavH~Sds~e~A~rEi~ 173 (183)
T PRK14544 97 VKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIK 173 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceeeEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999888 7999999999884 7999999999999999999
Q ss_pred hhhccccc
Q psy8252 120 VHGRHTGV 127 (129)
Q Consensus 120 ~f~~~~~~ 127 (129)
+||+..++
T Consensus 174 ~fF~~~~~ 181 (183)
T PRK14544 174 FWFREEEI 181 (183)
T ss_pred HhCChhhc
Confidence 99987553
No 22
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=81.60 E-value=0.83 Score=28.08 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=24.0
Q ss_pred eccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEE
Q psy8252 26 TAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSE 59 (129)
Q Consensus 26 ~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvi 59 (129)
-+||++++++||... |++|...--+||.+
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 367899999999874 89988887888865
No 23
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=79.90 E-value=1.6 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=24.1
Q ss_pred ccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEE
Q psy8252 27 AMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSE 59 (129)
Q Consensus 27 ~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvi 59 (129)
.||+++++.||+.. |+.|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 58999999999775 89998888888865
No 24
>KOG4132|consensus
Probab=66.83 E-value=15 Score=28.19 Aligned_cols=114 Identities=5% Similarity=0.053 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEE-EEeeCcHHHHHHHHhCCCc
Q psy8252 2 AAIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEIN-ILARENAITKWRELLGPTK 80 (129)
Q Consensus 2 ~~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial-~l~g~nav~~~r~l~Gp~~ 80 (129)
.++.+++|.++|.++||.+-..-. |....-..++.++..+|..-+.+.- ++=++..+....+..|..+
T Consensus 141 Gn~~rdil~kkL~~~G~~Vds~~V-----------Y~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~ 209 (260)
T KOG4132|consen 141 GNLRRDILPKKLHDKGIRVDSCEV-----------YETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSN 209 (260)
T ss_pred ccchhHHHHHHHHhCCceeeEEEE-----------EeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhc
Confidence 357789999999999999866533 4444434567777777776654433 3335666666666665433
Q ss_pred hh--hhh--hcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 81 VY--IAR--FSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 81 ~~--~a~--~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
.. ..+ ..-|+|-|+.=.....-|++-=+.++++-..-|..+-+|-|
T Consensus 210 ~s~~~~k~aaIGPtT~kaL~~~g~~~~~vs~~P~pe~L~~~I~~~~~~~~ 259 (260)
T KOG4132|consen 210 RSGDHLKLAAIGPTTRKALEDLGVKVDVVSPAPDPESLADAIELYQRHKG 259 (260)
T ss_pred cchhheeEEEeCcchHHHHHHcCCCcceecCCCCHHHHHHHHHhhhhccC
Confidence 22 111 12366666655444556777777888888888887777654
No 25
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=63.85 E-value=29 Score=21.57 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHhCCceEEceeee-ccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHH
Q psy8252 2 AAIHEKAIQNVILSNQFHIVESLTT-AMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWREL 75 (129)
Q Consensus 2 ~~~~g~iI~~~i~~~gf~I~~~km~-~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l 75 (129)
++.+|..|...|..+|+.-.+.-.. .-+++.++++...+.-..+..+..+.+....++.+.+.-...-+-+.++
T Consensus 7 ~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 7 AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 4678899989999999733333323 6678888777665542222213444555677888888877766666666
No 26
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=39.91 E-value=60 Score=22.21 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHhCCceEEceeeecc-CHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHh
Q psy8252 2 AAIHEKAIQNVILSNQFHIVESLTTAM-TKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELL 76 (129)
Q Consensus 2 ~~~~g~iI~~~i~~~gf~I~~~km~~l-s~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~ 76 (129)
|+.+|..+-..|.++|+.|...---.. +.+.+..+... . .+.++-+.+....++.+-+ .+++|+.+-+-+
T Consensus 18 aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~---~-~~~~~~~~~~~aDlv~iav-pDdaI~~va~~L 88 (127)
T PF10727_consen 18 AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGA---G-AILDLEEILRDADLVFIAV-PDDAIAEVAEQL 88 (127)
T ss_dssp TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccc---c-cccccccccccCCEEEEEe-chHHHHHHHHHH
Confidence 456666776778899999987533222 23333333322 1 1233334445555554444 466766544433
No 27
>KOG1431|consensus
Probab=38.20 E-value=54 Score=25.57 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhCCc-----eEEceeeeccCH-HHHHHHhHhhcCcccHHHHHhhhhcC
Q psy8252 3 AIHEKAIQNVILSNQF-----HIVESLTTAMTK-QQTEIFYSEHKDKFFYNRLVTQMISG 56 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf-----~I~~~km~~ls~-~~a~~~y~~~~~~~~~~~lv~~~~sG 56 (129)
+++|+.|.+.+++.|| .....|-.-|+. ++.+.||... +|.+--++..|-.|
T Consensus 11 GLVGsAi~~vv~~q~~~~e~wvf~~skd~DLt~~a~t~~lF~~e--kPthVIhlAAmVGG 68 (315)
T KOG1431|consen 11 GLVGSAIVKVVQEQGFDDENWVFIGSKDADLTNLADTRALFESE--KPTHVIHLAAMVGG 68 (315)
T ss_pred chHHHHHHHHHHhcCCCCcceEEeccccccccchHHHHHHHhcc--CCceeeehHhhhcc
Confidence 6899999888888887 677778887874 4567777654 45454455555544
No 28
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=37.79 E-value=1.7e+02 Score=21.91 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhH
Q psy8252 2 AAIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYS 38 (129)
Q Consensus 2 ~~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~ 38 (129)
++.+|..|...|.+.|+.+...-...-+++.++++-.
T Consensus 8 ~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~ 44 (258)
T PRK06476 8 TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAE 44 (258)
T ss_pred cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHH
Confidence 4678888878898888765444344445666655543
No 29
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=36.23 E-value=69 Score=19.82 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.8
Q ss_pred eEEceeeeccCHHHHHHHhH
Q psy8252 19 HIVESLTTAMTKQQTEIFYS 38 (129)
Q Consensus 19 ~I~~~km~~ls~~~a~~~y~ 38 (129)
.|+..+-++||+++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 47888999999999999976
No 30
>PRK07680 late competence protein ComER; Validated
Probab=33.79 E-value=1.7e+02 Score=22.06 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHhCCc-eEEceeeeccCHHHHHHHh
Q psy8252 2 AAIHEKAIQNVILSNQF-HIVESLTTAMTKQQTEIFY 37 (129)
Q Consensus 2 ~~~~g~iI~~~i~~~gf-~I~~~km~~ls~~~a~~~y 37 (129)
+|.+|..|...|.++|+ .+.......-+++.+..+.
T Consensus 8 ~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~ 44 (273)
T PRK07680 8 TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIK 44 (273)
T ss_pred ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHH
Confidence 46788888788888884 3333444455555555443
No 31
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=33.78 E-value=47 Score=18.04 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHHHHHhCC-ceEEceeeeccCHHHHHHHhHh
Q psy8252 8 AIQNVILSNQ-FHIVESLTTAMTKQQTEIFYSE 39 (129)
Q Consensus 8 iI~~~i~~~g-f~I~~~km~~ls~~~a~~~y~~ 39 (129)
.+|++|.+.| |+...-....+|-++.+..|..
T Consensus 5 ~lI~~Li~~Giyk~~drqL~Eltl~ELe~ey~~ 37 (38)
T PF13076_consen 5 FLIEKLIQSGIYKKEDRQLYELTLSELEKEYER 37 (38)
T ss_pred HHHHHHHHcCCcCccchHHHHcCHHHHHHHHHc
Confidence 3458999888 5555533778888888777753
No 32
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.24 E-value=62 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCceEEceee
Q psy8252 6 EKAIQNVILSNQFHIVESLT 25 (129)
Q Consensus 6 g~iI~~~i~~~gf~I~~~km 25 (129)
++.+++.|++.||..+..|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 44455999999999998873
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.00 E-value=1.4e+02 Score=20.69 Aligned_cols=65 Identities=6% Similarity=0.021 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHH
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKW 72 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~ 72 (129)
+.+|.-|-..|.++|+.+.- ...+++-+.++.... ....++.-+....-.++.+.|....+++.+
T Consensus 10 G~mG~~~a~~L~~~g~~v~~---~d~~~~~~~~~~~~g--~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v 74 (163)
T PF03446_consen 10 GNMGSAMARNLAKAGYEVTV---YDRSPEKAEALAEAG--AEVADSPAEAAEQADVVILCVPDDDAVEAV 74 (163)
T ss_dssp SHHHHHHHHHHHHTTTEEEE---EESSHHHHHHHHHTT--EEEESSHHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEe---eccchhhhhhhHHhh--hhhhhhhhhHhhcccceEeecccchhhhhh
Confidence 56788888999999999864 557888888886542 222334444455557777777766665543
No 34
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=1.3e+02 Score=20.60 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=33.1
Q ss_pred ccCHHHHHHHhHhhcCcc-----------cHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCC
Q psy8252 27 AMTKQQTEIFYSEHKDKF-----------FYNRLVTQMISGPSEINILARENAITKWRELLGP 78 (129)
Q Consensus 27 ~ls~~~a~~~y~~~~~~~-----------~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp 78 (129)
.|+.++++++|....+.- .-+...+++.+-.+-+.++.-+.||+.|.++-|.
T Consensus 48 kl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 48 KLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred ccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 466777777776543321 1233445555555667777788899999888875
No 35
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=28.98 E-value=1.3e+02 Score=24.52 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHhCCceEEceeeeccCHHHHHHHhHhhcC------------cccHHHHHhhhhcCcEEEEEEe
Q psy8252 11 NVILSNQFHIVESLTTAMTKQQTEIFYSEHKD------------KFFYNRLVTQMISGPSEINILA 64 (129)
Q Consensus 11 ~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~------------~~~~~~lv~~~~sGpvial~l~ 64 (129)
+++.+.|++|....--.+++++...||.-+.. ..||..+.+.|...-++++...
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~ 258 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARR 258 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEE
Confidence 45567999999998888999887776654332 3478888888877655554443
No 36
>KOG0352|consensus
Probab=27.74 E-value=87 Score=26.70 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=41.4
Q ss_pred EEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeC-cHHHHHHHHhCCCchhhhhhcCCCCcccccc
Q psy8252 20 IVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARE-NAITKWRELLGPTKVYIARFSHPYSIRGMYG 97 (129)
Q Consensus 20 I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~-nav~~~r~l~Gp~~~~~a~~~~p~slR~~fg 97 (129)
=.+.||+.+|||+|. ..+|+.+++-|.+--+++..+.-+ .+|+.|--= +.|.-- .-++||..||
T Consensus 111 kp~~K~LYITPE~AA--------t~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD---FRPDYL---~LG~LRS~~~ 175 (641)
T KOG0352|consen 111 KPTIKMLYITPEGAA--------TDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD---FRPDYL---TLGSLRSVCP 175 (641)
T ss_pred CCceeEEEEchhhhh--------hhhHHHHHHHHhhhceeeeEEechhhhHhhhccc---cCcchh---hhhhHHhhCC
Confidence 356788889988875 345888888888888888777754 477777321 222211 2356676665
No 37
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=27.64 E-value=42 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred CcHHHHHHHHhCCCchhhhhhcCCCCcccccccCC
Q psy8252 66 ENAITKWRELLGPTKVYIARFSHPYSIRGMYGISD 100 (129)
Q Consensus 66 ~nav~~~r~l~Gp~~~~~a~~~~p~slR~~fg~~~ 100 (129)
.+..++||.++.|.+ +-++||+.|-.+.
T Consensus 94 ~~~Le~ck~LL~~~n-------D~S~lra~yPhd~ 121 (171)
T PF15120_consen 94 NALLEKCKTLLNPSN-------DFSSLRAKYPHDV 121 (171)
T ss_pred HHHHHHHHHHcCCcc-------chHHHhhcCCccc
Confidence 368999999998876 4567888886653
No 38
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.34 E-value=1.6e+02 Score=18.99 Aligned_cols=73 Identities=5% Similarity=0.008 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHh----hcCcccHHHHHhhhhc--CcEEEEEEee-CcHHHHHHHHhC
Q psy8252 5 HEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSE----HKDKFFYNRLVTQMIS--GPSEINILAR-ENAITKWRELLG 77 (129)
Q Consensus 5 ~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~----~~~~~~~~~lv~~~~s--Gpvial~l~g-~nav~~~r~l~G 77 (129)
+|-..++..+..|.+|+..-.-.-..+.++++... +. .+.+.+-+.-++. |+-+++...| ...++..-+++.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~-~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~ 80 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYS-DDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLR 80 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETT-TSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEE
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccccccccc-ccccccccccccccccceEEEEecCcHHHHHHHHHHhc
Confidence 45555577788888877766544344556665432 22 2234554555555 5888888899 677888778876
Q ss_pred C
Q psy8252 78 P 78 (129)
Q Consensus 78 p 78 (129)
+
T Consensus 81 ~ 81 (130)
T PF00107_consen 81 P 81 (130)
T ss_dssp E
T ss_pred c
Confidence 4
No 39
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=24.58 E-value=45 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhh
Q psy8252 6 EKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEH 40 (129)
Q Consensus 6 g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~ 40 (129)
.+|+ ..|.+.|+.+...-..+.+++.+..+|...
T Consensus 15 ~eIv-~~L~~~~~~~t~~dl~kPt~e~v~~ly~~~ 48 (146)
T PF03800_consen 15 DEIV-NCLQECGIPVTEEDLKKPTPEFVQKLYERF 48 (146)
T ss_dssp HHHH-HHHHHHT--HHHHC--G--HHHHHHHHHHH
T ss_pred HHHH-HHHHHCCCCcCHHHHcCCCHHHHHHHHHHH
Confidence 4555 999999999988899999999999998653
No 40
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=23.96 E-value=66 Score=21.57 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=15.3
Q ss_pred CHHHHHHHhHhhcCccc
Q psy8252 29 TKQQTEIFYSEHKDKFF 45 (129)
Q Consensus 29 s~~~a~~~y~~~~~~~~ 45 (129)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 68889999999999987
No 41
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.61 E-value=1.1e+02 Score=18.95 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHH
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIF 36 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~ 36 (129)
.++-+++ +.|.++|+.+.. ++..++..+
T Consensus 53 ~~~~~i~-~~L~~~G~~~~~-----~~~~~~~~~ 80 (85)
T cd04906 53 EELAELL-EDLKSAGYEVVD-----LSDDELAKT 80 (85)
T ss_pred HHHHHHH-HHHHHCCCCeEE-----CCCCHHHHH
Confidence 3445566 889999987754 455554433
No 42
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=23.13 E-value=3e+02 Score=20.67 Aligned_cols=33 Identities=9% Similarity=0.280 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCceEEc----eeeeccCHHHHHHHhHh
Q psy8252 6 EKAIQNVILSNQFHIVE----SLTTAMTKQQTEIFYSE 39 (129)
Q Consensus 6 g~iI~~~i~~~gf~I~~----~km~~ls~~~a~~~y~~ 39 (129)
...+ ++|++.|+.-.. .+.+.||++-...+...
T Consensus 39 sr~L-k~LEe~GlI~R~~~~r~~~v~LTekG~~ll~~~ 75 (217)
T PRK14165 39 ARIL-KQLEDEGYITRTIVPRGQLITITEKGLDVLYNE 75 (217)
T ss_pred HHHH-HHHHHCCCEEEEEcCCceEEEECHHHHHHHHHH
Confidence 4455 999999988654 57888888765555433
No 43
>PRK12483 threonine dehydratase; Reviewed
Probab=21.04 E-value=3.5e+02 Score=23.08 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=36.0
Q ss_pred HHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCc--------EEEEEE-eeCcHHHHHHHHhCCC
Q psy8252 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGP--------SEINIL-ARENAITKWRELLGPT 79 (129)
Q Consensus 9 I~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGp--------vial~l-~g~nav~~~r~l~Gp~ 79 (129)
|++.|++.||.+... +. .+.+...+.||..|- +++..+ +.+.+..++-+.+|+.
T Consensus 402 i~~~l~~~g~~~~dl-----sd------------ne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~ 464 (521)
T PRK12483 402 LLASLRAQGFPVLDL-----TD------------DELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR 464 (521)
T ss_pred HHHHHHHCCCCeEEC-----CC------------CHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC
Confidence 338888888876543 33 333444566777662 566666 5788999999999873
No 44
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=20.91 E-value=1.2e+02 Score=19.42 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCceEEceeee
Q psy8252 6 EKAIQNVILSNQFHIVESLTT 26 (129)
Q Consensus 6 g~iI~~~i~~~gf~I~~~km~ 26 (129)
..+++++|+..||+++.+.-+
T Consensus 52 Pr~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 52 PRVVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHhcCeEEEEEecc
Confidence 345669999999999987543
No 45
>PF11407 RestrictionMunI: Type II restriction enzyme MunI; InterPro: IPR022725 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Type II restriction enzyme MunI recognises the palindromic sequence C/AATTG. It makes contact with the DNA via the major groove []. ; PDB: 1D02_B.
Probab=20.54 E-value=56 Score=24.17 Aligned_cols=15 Identities=13% Similarity=-0.186 Sum_probs=11.9
Q ss_pred hhHHhhhhhcccccC
Q psy8252 114 YNHEPIVHGRHTGVN 128 (129)
Q Consensus 114 a~~e~~~f~~~~~~~ 128 (129)
-.|||.+|+++++-|
T Consensus 162 R~REIt~Wf~~y~~n 176 (202)
T PF11407_consen 162 RVREITFWFDEYDKN 176 (202)
T ss_dssp HHHHHHHHHTT-CCC
T ss_pred cceeeeeehhhcccc
Confidence 578999999998865
No 46
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.44 E-value=2.4e+02 Score=17.85 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhc
Q psy8252 6 EKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHK 41 (129)
Q Consensus 6 g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~ 41 (129)
.+++ ..+.+.|..|.--|-+.++.++++++....+
T Consensus 76 ~~~~-~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 76 AEIA-KKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp HHHH-HHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHH-HHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 4556 7778899999999999999999999986543
No 47
>KOG0030|consensus
Probab=20.33 E-value=1.2e+02 Score=21.56 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=23.3
Q ss_pred ccCHHHHHHHhHhhcCc---ccHHHHHhhhhcC
Q psy8252 27 AMTKQQTEIFYSEHKDK---FFYNRLVTQMISG 56 (129)
Q Consensus 27 ~ls~~~a~~~y~~~~~~---~~~~~lv~~~~sG 56 (129)
+|+++++.++...+.+. -.|..+|..+.+|
T Consensus 120 kl~eeEVe~Llag~eD~nG~i~YE~fVk~i~~g 152 (152)
T KOG0030|consen 120 KLTEEEVEELLAGQEDSNGCINYEAFVKHIMSG 152 (152)
T ss_pred hccHHHHHHHHccccccCCcCcHHHHHHHHhcC
Confidence 57899999998877665 4788888877665
Done!