Query psy8252
Match_columns 129
No_of_seqs 110 out of 1061
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:36:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztp_A Nucleoside diphosphate 100.0 2.1E-47 7.3E-52 268.3 13.1 124 3-127 18-141 (142)
2 4hr2_A Nucleoside diphosphate 100.0 6.4E-47 2.2E-51 266.2 12.9 121 3-127 22-142 (145)
3 3evo_A NDP kinase, NDK, nucleo 100.0 4.5E-46 1.5E-50 262.4 13.0 121 3-127 21-142 (146)
4 4fkx_A NDK B, nucleoside dipho 100.0 4.1E-46 1.4E-50 265.9 12.7 121 3-127 26-146 (161)
5 3mpd_A Nucleoside diphosphate 100.0 5.8E-46 2E-50 263.1 12.5 121 3-127 20-141 (151)
6 3fkb_A NDP kinase, NDK, nucleo 100.0 6.1E-46 2.1E-50 263.9 12.6 121 3-127 23-143 (155)
7 1wkj_A Nucleoside diphosphate 100.0 6.7E-46 2.3E-50 259.3 12.5 121 3-127 16-136 (137)
8 1nhk_R Nucleoside diphosphate 100.0 1.3E-45 4.3E-50 259.7 13.4 121 3-127 17-137 (144)
9 3q8u_A Nucleoside diphosphate 100.0 1E-45 3.5E-50 263.1 13.0 121 3-127 16-136 (157)
10 2hur_A NDK, nucleoside diphosp 100.0 1.1E-45 3.9E-50 259.5 13.0 121 3-127 17-137 (142)
11 1k44_A Nucleoside diphosphate 100.0 1.8E-45 6.2E-50 256.8 13.1 117 3-123 17-134 (136)
12 2vu5_A Nucleoside diphosphate 100.0 2.1E-45 7.2E-50 259.7 11.8 121 3-127 16-136 (148)
13 1ehw_A NDPK H4, nucleoside dip 100.0 4.8E-45 1.6E-49 260.8 13.5 121 3-127 39-159 (162)
14 3js9_A Nucleoside diphosphate 100.0 2.7E-45 9.3E-50 260.7 12.1 121 3-127 24-144 (156)
15 1pku_A Nucleoside diphosphate 100.0 4.2E-45 1.4E-49 258.6 12.2 120 3-127 17-136 (150)
16 3l7u_A Nucleoside diphosphate 100.0 3.5E-45 1.2E-49 263.4 12.0 121 3-127 39-159 (172)
17 1xiq_A Nucleoside diphosphate 100.0 4.2E-45 1.4E-49 260.0 11.9 121 3-127 24-144 (157)
18 3bbb_A Nucleoside diphosphate 100.0 6.1E-45 2.1E-49 258.0 12.7 121 3-127 18-138 (151)
19 3r9l_A Nucleoside diphosphate 100.0 1E-45 3.5E-50 262.7 8.5 121 3-127 22-142 (155)
20 1u8w_A Nucleoside diphosphate 100.0 4.9E-45 1.7E-49 258.0 11.8 120 3-127 16-135 (149)
21 1nb2_A Nucleoside diphosphate 100.0 3.3E-45 1.1E-49 259.2 10.8 121 3-127 17-137 (150)
22 1s57_A Nucleoside diphosphate 100.0 7.9E-45 2.7E-49 257.9 12.5 121 3-127 20-140 (153)
23 2dxe_A Nucleoside diphosphate 100.0 1.4E-44 4.9E-49 258.2 12.6 121 3-127 22-145 (160)
24 3b54_A NDK, NDP kinase, nucleo 100.0 9.5E-45 3.3E-49 259.2 10.9 121 3-127 28-148 (161)
25 1w7w_A Nucleoside diphosphate 100.0 2.7E-44 9.2E-49 261.1 13.0 121 3-127 47-167 (182)
26 1zs6_A Nucleoside diphosphate 100.0 2.5E-44 8.6E-49 258.7 12.2 121 3-127 36-156 (169)
27 2az3_A Nucleoside diphosphate 100.0 5E-44 1.7E-48 256.1 13.2 121 3-127 23-145 (164)
28 4dz6_A Nucleoside diphosphate 100.0 6.6E-44 2.3E-48 260.3 11.1 121 3-127 41-176 (190)
29 1xqi_A Nucleoside diphosphate 100.0 9.5E-42 3.3E-46 250.2 9.9 121 3-127 30-193 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 2.8E-29 9.6E-34 198.0 9.5 98 3-126 250-347 (352)
31 3i5g_C Myosin catalytic light 44.5 14 0.00047 24.5 2.4 32 27-58 117-154 (159)
32 1y7p_A Hypothetical protein AF 29.1 34 0.0012 24.9 2.5 26 1-27 156-181 (223)
33 1jg5_A GTP cyclohydrolase I fe 21.7 68 0.0023 19.6 2.5 19 7-25 53-71 (83)
34 1lc0_A Biliverdin reductase A; 21.4 2E+02 0.0069 20.8 5.6 54 5-59 78-144 (294)
No 1
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.1e-47 Score=268.28 Aligned_cols=124 Identities=28% Similarity=0.386 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 18 ~~~g~Ii-~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~ 96 (142)
T 3ztp_A 18 GALGKIL-DRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSE 96 (142)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSHH
T ss_pred ccHHHHH-HHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCHH
Confidence 4679998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.|+...|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 97 ~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 141 (142)
T 3ztp_A 97 EARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLEI 141 (142)
T ss_dssp HHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGGC
T ss_pred HhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999999999999999987654
No 2
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=6.4e-47 Score=266.22 Aligned_cols=121 Identities=29% Similarity=0.364 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|+++|||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 22 ~l~g~Ii-~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~tdp~ 100 (145)
T 4hr2_A 22 NVIGQIY-SRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPK 100 (145)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTT
T ss_pred CCHHHHH-HHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCCcc
Confidence 5689998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
+| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 101 ~A---~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei 142 (145)
T 4hr2_A 101 KA---EKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNV 142 (145)
T ss_dssp TS---CTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGC
T ss_pred cC---CCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhc
Confidence 99 6999999999999999999999999999999999987664
No 3
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=4.5e-46 Score=262.40 Aligned_cols=121 Identities=24% Similarity=0.272 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeecc-CHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCch
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAM-TKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKV 81 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~l-s~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~ 81 (129)
+++|+|| ++|+++||+|+++||++| |+++|++||.+|++++||+.|++||+||||++|+|+|+|||+.||+++|||+|
T Consensus 21 ~~~g~Ii-~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p 99 (146)
T 3evo_A 21 SLVAEIM-GRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNP 99 (146)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSST
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCc
Confidence 4679998 999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 82 YIARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 82 ~~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
..| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 100 ~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 142 (146)
T 3evo_A 100 LAS---APGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 142 (146)
T ss_dssp TTC---CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC----
T ss_pred ccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhc
Confidence 999 8999999999999999999999999999999999987665
No 4
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=4.1e-46 Score=265.88 Aligned_cols=121 Identities=23% Similarity=0.277 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 26 ~l~GeIi-~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~ 104 (161)
T 4fkx_A 26 NLVGEII-KRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPA 104 (161)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred CcHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 105 ~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~ 146 (161)
T 4fkx_A 105 DS---LPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEEL 146 (161)
T ss_dssp GC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGS
T ss_pred hc---CCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhc
Confidence 88 7999999999999999999999999999999999987664
No 5
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=5.8e-46 Score=263.09 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 20 ~~~g~Ii-~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 98 (151)
T 3mpd_A 20 RLISRII-QRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQ 98 (151)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred CcHHHHH-HHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhc-cccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGR-HTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~-~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||. ..++
T Consensus 99 ~a---~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~ 141 (151)
T 3mpd_A 99 AA---SVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQP 141 (151)
T ss_dssp TS---CTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCC
T ss_pred hc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchh
Confidence 88 799999999999999999999999999999999997 6554
No 6
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=6.1e-46 Score=263.90 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+|||++||+++||++|.
T Consensus 23 ~~~g~Ii-~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 101 (155)
T 3fkb_A 23 GLVGEII-ARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPL 101 (155)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred CcHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 102 ~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 143 (155)
T 3fkb_A 102 AS---APGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEEL 143 (155)
T ss_dssp GS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGS
T ss_pred hc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhc
Confidence 88 7999999999999999999999999999999999987664
No 7
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=6.7e-46 Score=259.32 Aligned_cols=121 Identities=25% Similarity=0.358 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 16 ~~~g~Ii-~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p~ 94 (137)
T 1wkj_A 16 GLVGEIL-ARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPK 94 (137)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCCC
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|++|||||+++|.+||.+||...++
T Consensus 95 ~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (137)
T 1wkj_A 95 DA---LPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136 (137)
T ss_dssp TC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGC
T ss_pred cC---CCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhhc
Confidence 99 8999999999999999999999999999999999987654
No 8
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1.3e-45 Score=259.71 Aligned_cols=121 Identities=30% Similarity=0.378 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 17 ~~~g~Ii-~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~ 95 (144)
T 1nhk_R 17 GVIGKII-SRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPA 95 (144)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCCC
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 96 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (144)
T 1nhk_R 96 QA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEI 137 (144)
T ss_dssp GC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred cC---CCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhh
Confidence 98 8999999999999999999999999999999999987664
No 9
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1e-45 Score=263.11 Aligned_cols=121 Identities=27% Similarity=0.374 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..++++|||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 16 ~~~G~Ii-~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~ 94 (157)
T 3q8u_A 16 NLIGEVI-SRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPS 94 (157)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred CCHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
+| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 95 ~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (157)
T 3q8u_A 95 EA---SPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEI 136 (157)
T ss_dssp TS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred hc---CCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhh
Confidence 98 7999999999999999999999999999999999987654
No 10
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=1.1e-45 Score=259.47 Aligned_cols=121 Identities=31% Similarity=0.384 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 17 ~~~g~Ii-~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~ 95 (142)
T 2hur_A 17 NVIGNIF-ARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPA 95 (142)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 96 ~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (142)
T 2hur_A 96 NA---LAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 137 (142)
T ss_dssp TS---CTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCS
T ss_pred cC---CCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhh
Confidence 98 8999999999999999999999999999999999987664
No 11
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.8e-45 Score=256.84 Aligned_cols=117 Identities=25% Similarity=0.324 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 17 ~~~g~Ii-~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~ 95 (136)
T 1k44_A 17 QLIGEII-SRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPV 95 (136)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhc
Q psy8252 83 -IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGR 123 (129)
Q Consensus 83 -~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~ 123 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||.
T Consensus 96 ~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~ 134 (136)
T 1k44_A 96 QAA---APGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134 (136)
T ss_dssp TTS---CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSS
T ss_pred ccC---CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCC
Confidence 88 799999999999999999999999999999999995
No 12
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=2.1e-45 Score=259.69 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 16 ~~~g~Ii-~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~ 94 (148)
T 2vu5_A 16 AFIGEIV-ARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPH 94 (148)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcc
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.+ .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 95 ~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (148)
T 2vu5_A 95 EA---APGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEEL 136 (148)
T ss_dssp TS---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGS
T ss_pred cc---CCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhc
Confidence 87 7999999999999999999999999999999999987654
No 13
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=4.8e-45 Score=260.82 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 39 ~l~GeIi-~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~ 117 (162)
T 1ehw_A 39 RLVGDVI-QRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSA 117 (162)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCC
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 118 ~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 159 (162)
T 1ehw_A 118 EA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSEL 159 (162)
T ss_dssp GS---CTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred CC---CCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhc
Confidence 98 7999999999999999999999999999999999987664
No 14
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=2.7e-45 Score=260.69 Aligned_cols=121 Identities=22% Similarity=0.244 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+++++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 24 ~~vGeIi-~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~ 102 (156)
T 3js9_A 24 GLIGEIL-KRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPV 102 (156)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCcc
Confidence 4789999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
+| .|+|||++||++..+|+||||||+++|.+||.+||...++
T Consensus 103 ~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~ 144 (156)
T 3js9_A 103 ES---AAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQL 144 (156)
T ss_dssp GS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGC
T ss_pred cc---CCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhc
Confidence 98 7999999999999999999999999999999999987654
No 15
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=4.2e-45 Score=258.62 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 17 ~~~g~Ii-~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~ 95 (150)
T 1pku_A 17 GLIGDII-SRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPW 95 (150)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+|| ..++
T Consensus 96 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~ 136 (150)
T 1pku_A 96 EA---APGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGL 136 (150)
T ss_dssp GS---CTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCC
T ss_pred cC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHh
Confidence 98 79999999999999999999999999999999999 5543
No 16
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-45 Score=263.35 Aligned_cols=121 Identities=24% Similarity=0.280 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+++++|||++|++||+||||++|+|+|+|||++||+++|||||.
T Consensus 39 ~l~GeIi-~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~ 117 (172)
T 3l7u_A 39 GLVGEII-KRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPA 117 (172)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 118 ~A---~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~ 159 (172)
T 3l7u_A 118 DS---KPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEEL 159 (172)
T ss_dssp TC---CTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGS
T ss_pred hc---CCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhc
Confidence 88 7999999999999999999999999999999999987654
No 17
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=4.2e-45 Score=260.05 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..++++|||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 24 ~lvGeIi-~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~ 102 (157)
T 1xiq_A 24 GLVGTII-KRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPL 102 (157)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCCC
Confidence 5689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 103 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 144 (157)
T 1xiq_A 103 TS---NTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEEL 144 (157)
T ss_dssp TS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGS
T ss_pred cC---CCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCcccc
Confidence 98 7999999999999999999999999999999999987654
No 18
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=6.1e-45 Score=258.02 Aligned_cols=121 Identities=24% Similarity=0.307 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||+++|+++|++||.+|++++||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 18 ~~~g~Ii-~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 96 (151)
T 3bbb_A 18 GLVGEII-KRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPA 96 (151)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCcc
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 97 ~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 138 (151)
T 3bbb_A 97 DS---KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEEL 138 (151)
T ss_dssp GC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGS
T ss_pred cC---CCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhc
Confidence 98 5999999999999999999999999999999999987654
No 19
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=1e-45 Score=262.73 Aligned_cols=121 Identities=27% Similarity=0.334 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+|||++||+++|||+|.
T Consensus 22 ~~~g~Ii-~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 100 (155)
T 3r9l_A 22 GLVGEII-SRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPA 100 (155)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTHHHHHHHHHCCSCTT
T ss_pred CcHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChh
Confidence 4689999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 101 ~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 142 (155)
T 3r9l_A 101 ES---APGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEV 142 (155)
T ss_dssp TC---CTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTC
T ss_pred hc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhc
Confidence 88 7999999999999999999999999999999999987654
No 20
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=4.9e-45 Score=258.02 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 16 ~~~g~Ii-~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~ 94 (149)
T 1u8w_A 16 GLIGEVI-CRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPA 94 (149)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+|| +.++
T Consensus 95 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~ 135 (149)
T 1u8w_A 95 AS---EPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGP 135 (149)
T ss_dssp TC---CTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCC
T ss_pred cC---CCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhh
Confidence 98 79999999999999999999999999999999999 5543
No 21
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=3.3e-45 Score=259.17 Aligned_cols=121 Identities=25% Similarity=0.277 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 17 ~~~g~Ii-~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~ 95 (150)
T 1nb2_A 17 NLVGEVV-KRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILGATNPS 95 (150)
T ss_dssp TCHHHHH-HHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCcc
Confidence 4689998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.+ .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 96 ~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 137 (150)
T 1nb2_A 96 DA---APGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEA 137 (150)
T ss_dssp SS---CTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSS
T ss_pred cC---CCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCcccc
Confidence 87 7999999999999999999999999999999999986654
No 22
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=7.9e-45 Score=257.94 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|+++|||++|++||+|||+++|+|+|+|||+.||+++|||+|.
T Consensus 20 ~l~g~Ii-~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 98 (153)
T 1s57_A 20 GLVGEII-SRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPL 98 (153)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTT
T ss_pred ccHHHHH-HHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 99 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 140 (153)
T 1s57_A 99 QA---EPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGEL 140 (153)
T ss_dssp TS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCC
T ss_pred cc---CCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhc
Confidence 99 6999999999999999999999999999999999987654
No 23
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.4e-44 Score=258.17 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|.
T Consensus 22 ~l~G~Ii-~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 100 (160)
T 2dxe_A 22 GLIGEII-SRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPK 100 (160)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCCC
Confidence 4689998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCC---cEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTR---NAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~---N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+ |+||||||+++|.+||.+||...++
T Consensus 101 ~a---~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 145 (160)
T 2dxe_A 101 DA---APGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEEL 145 (160)
T ss_dssp GS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGC
T ss_pred cC---CCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhh
Confidence 98 799999999999999 9999999999999999999987654
No 24
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-45 Score=259.16 Aligned_cols=121 Identities=23% Similarity=0.358 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..++++|||++|++||+||||++|+|+|+|||+.||+++|||+|.
T Consensus 28 ~liGeIi-~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~ 106 (161)
T 3b54_A 28 GLVSQIL-SRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPL 106 (161)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcc
Confidence 4689998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 107 ~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 148 (161)
T 3b54_A 107 GS---APGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEEL 148 (161)
T ss_dssp GS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTC
T ss_pred cC---CCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhc
Confidence 87 7999999999999999999999999999999999987654
No 25
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-44 Score=261.05 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|+++|+||||++|+|+|+|||++||+++|||+|.
T Consensus 47 ~liGeIi-~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p~ 125 (182)
T 1w7w_A 47 GLISEII-SRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQ 125 (182)
T ss_dssp TCHHHHH-HHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred CcHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCCC
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+||.+||...++
T Consensus 126 ~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 167 (182)
T 1w7w_A 126 KS---APGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEEL 167 (182)
T ss_dssp GS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGC
T ss_pred CC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhc
Confidence 98 7999999999999999999999999999999999987654
No 26
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.5e-44 Score=258.74 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||+++||++|.
T Consensus 36 ~l~GeIi-~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 114 (169)
T 1zs6_A 36 RLVGEIV-RRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPA 114 (169)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCcc
Confidence 4689988 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||+++|.+|+.+||...++
T Consensus 115 ~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 156 (169)
T 1zs6_A 115 DA---PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADEL 156 (169)
T ss_dssp GS---CTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGS
T ss_pred cC---CCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhh
Confidence 98 7999999999999999999999999999999999987654
No 27
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=5e-44 Score=256.09 Aligned_cols=121 Identities=24% Similarity=0.339 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++||+++|++||..|+++|||++|++||+||||++|+|+|+|||+.||+++|||+|.
T Consensus 23 ~~~GeIi-~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~ 101 (164)
T 2az3_A 23 GLIGDIV-TRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQ 101 (164)
T ss_dssp TCHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGG
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCcc
Confidence 4689998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChh--hhhHHhhhhhccccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLR--DYNHEPIVHGRHTGV 127 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e--~a~~e~~~f~~~~~~ 127 (129)
.| .|+|||++||.+..+|+||||||++ +|.+||.+||...++
T Consensus 102 ~a---~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~ 145 (164)
T 2az3_A 102 DA---APGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDEL 145 (164)
T ss_dssp GS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSS
T ss_pred cc---CCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhh
Confidence 87 7999999999999999999999999 999999999987654
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=6.6e-44 Score=260.25 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhH-----hhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhC
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYS-----EHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~-----~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~G 77 (129)
+++|+|| ++|+++||+|+++||++||+++|++||. ++++++||+.|++||+||||++|+|+|+|||++||+++|
T Consensus 41 ~l~G~Ii-~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~G 119 (190)
T 4dz6_A 41 GLIGDVV-SRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCG 119 (190)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEEEEETHHHHHHHHHC
T ss_pred CcHHHHH-HHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEEecCCHHHHHHHHcC
Confidence 5789999 9999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCcccccccCC----------CCcEEEeCCChhhhhHHhhhhhccccc
Q psy8252 78 PTKVYIARFSHPYSIRGMYGISD----------TRNAAHGSEWLRDYNHEPIVHGRHTGV 127 (129)
Q Consensus 78 p~~~~~a~~~~p~slR~~fg~~~----------~~N~vh~Sds~e~a~~e~~~f~~~~~~ 127 (129)
||+|.+| .|+|||++||.+. .+|+||||||+++|.+||.+||...++
T Consensus 120 pTdP~~A---~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~ 176 (190)
T 4dz6_A 120 ATEPKLA---IPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEI 176 (190)
T ss_dssp CSSGGGS---CTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGS
T ss_pred CCChhhc---CCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHh
Confidence 9999998 7999999999999 999999999999999999999987764
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=9.5e-42 Score=250.20 Aligned_cols=121 Identities=26% Similarity=0.346 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHh-------------H--------------------hhcCcccHHHH
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFY-------------S--------------------EHKDKFFYNRL 49 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y-------------~--------------------~~~~~~~~~~l 49 (129)
+++|+|| ++|+++||+|+++||+++|+++|++|| . .|.+++||+.|
T Consensus 30 ~l~G~Ii-~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~gk~ff~~L 108 (195)
T 1xqi_A 30 GLVDEII-SRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNL 108 (195)
T ss_dssp TCHHHHH-HHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhccccchhcCCcchHHH
Confidence 4689998 999999999999999999999999999 7 88999999999
Q ss_pred HhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchhhhhhcCCCCcccccccCCCC----------cEEEeCCChhhhhHHhh
Q psy8252 50 VTQMISGPSEINILARENAITKWRELLGPTKVYIARFSHPYSIRGMYGISDTR----------NAAHGSEWLRDYNHEPI 119 (129)
Q Consensus 50 v~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~~a~~~~p~slR~~fg~~~~~----------N~vh~Sds~e~a~~e~~ 119 (129)
++||+||||++|+|+|+|||++||+++|||+|..| .|+|||++||.+..+ |+||||||+++|.+|+.
T Consensus 109 v~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgSDS~esA~rEi~ 185 (195)
T 1xqi_A 109 VKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIR 185 (195)
T ss_dssp HHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCCSEEECSSHHHHHHHHH
T ss_pred HHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccceEEEcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999 799999999999888 99999999999999999
Q ss_pred hhhccccc
Q psy8252 120 VHGRHTGV 127 (129)
Q Consensus 120 ~f~~~~~~ 127 (129)
+||...++
T Consensus 186 ~~F~~~e~ 193 (195)
T 1xqi_A 186 FWFREEEV 193 (195)
T ss_dssp HHCCGGGS
T ss_pred HhCChhhc
Confidence 99998775
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.96 E-value=2.8e-29 Score=198.01 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhcCcccHHHHHhhhhcCcEEEEEEeeCcHHHHHHHHhCCCchh
Q psy8252 3 AIHEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVY 82 (129)
Q Consensus 3 ~~~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~~~~~~~~lv~~~~sGpvial~l~g~nav~~~r~l~Gp~~~~ 82 (129)
+++|+|| ++|+++||+|+++||++|++++|++||.+|+ ++|++||+|||+++|+|+|+|||+.||+++|+++|
T Consensus 250 ~~iG~Ii-~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~av~~~R~l~g~t~p- 322 (352)
T 3bh7_B 250 ANARKLI-DEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFN- 322 (352)
T ss_dssp HHHHHHH-HHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTHHHHHHHHHHHHCT-
T ss_pred cCHHHHH-HHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCHHHHHHHHhcCCCC-
Confidence 4689999 9999999999999999999999999999997 67999999999999999999999999999999984
Q ss_pred hhhhcCCCCcccccccCCCCcEEEeCCChhhhhHHhhhhhcccc
Q psy8252 83 IARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126 (129)
Q Consensus 83 ~a~~~~p~slR~~fg~~~~~N~vh~Sds~e~a~~e~~~f~~~~~ 126 (129)
+|++|||||+|+|++||++||.+..
T Consensus 323 -------------------gN~vHgSds~esA~~Ei~~fF~~~~ 347 (352)
T 3bh7_B 323 -------------------GTKMFVSESKETASGDVDSFYNFAD 347 (352)
T ss_dssp -------------------TSCEEECSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CceEEecCCHHHHHHHHHHhcCccc
Confidence 2999999999999999999997653
No 31
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=44.51 E-value=14 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=25.1
Q ss_pred ccCHHHHHHHhHhhc------CcccHHHHHhhhhcCcE
Q psy8252 27 AMTKQQTEIFYSEHK------DKFFYNRLVTQMISGPS 58 (129)
Q Consensus 27 ~ls~~~a~~~y~~~~------~~~~~~~lv~~~~sGpv 58 (129)
.+|++++.++..... |+-.|.+++..|.+||+
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 578999998886432 35689999999999984
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=29.13 E-value=34 Score=24.94 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHhCCceEEceeeec
Q psy8252 1 MAAIHEKAIQNVILSNQFHIVESLTTA 27 (129)
Q Consensus 1 ~~~~~g~iI~~~i~~~gf~I~~~km~~ 27 (129)
|.+.+.+.+ ++++++|+.|+.++|.-
T Consensus 156 mgg~i~~~v-~~~~~~~i~vi~l~m~g 181 (223)
T 1y7p_A 156 MGGKITEEV-KKLRKSGIRVISLSMFG 181 (223)
T ss_dssp CCTHHHHHH-HHHGGGTCEEEEESCBS
T ss_pred ccchHHHHH-HHHHHCCCeEEEecCCC
Confidence 678888889 99999999999999974
No 33
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=21.70 E-value=68 Score=19.59 Aligned_cols=19 Identities=5% Similarity=0.216 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCceEEceee
Q psy8252 7 KAIQNVILSNQFHIVESLT 25 (129)
Q Consensus 7 ~iI~~~i~~~gf~I~~~km 25 (129)
.+++++|+..||+++.+.=
T Consensus 53 r~VLnKLE~~G~rVvsmtG 71 (83)
T 1jg5_A 53 RIVLDKLECRGFRVLSMTG 71 (83)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHhccCeEEEEEec
Confidence 3556999999999988753
No 34
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=21.38 E-value=2e+02 Score=20.77 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCceEEceeeeccCHHHHHHHhHhhc--Cc-----------ccHHHHHhhhhcCcEE
Q psy8252 5 HEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHK--DK-----------FFYNRLVTQMISGPSE 59 (129)
Q Consensus 5 ~g~iI~~~i~~~gf~I~~~km~~ls~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sGpvi 59 (129)
..+++ ....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|++.
T Consensus 78 H~~~~-~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i~ 144 (294)
T 1lc0_A 78 HEDYI-RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGKELL 144 (294)
T ss_dssp HHHHH-HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHTTCCEE
T ss_pred HHHHH-HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHhcCCee
Confidence 34555 5666789999999999999999999976432 21 3456677788888873
Done!