RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8252
(129 letters)
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 89.9 bits (224), Expect = 2e-24
Identities = 34/100 (34%), Positives = 49/100 (49%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + + F I T ++ FY H+++ F+ LV M SGP +L E+A
Sbjct: 23 ILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
I + RE++GPT AR P SIR +G +NA H S
Sbjct: 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHAS 122
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 84.1 bits (209), Expect = 4e-22
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + + IV + +++ E FY+ H ++ F+ LV MISGP I +L E+A
Sbjct: 27 IYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDA 86
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
I K R+L+G T A +IR + S NA HGS
Sbjct: 87 ILKNRDLMGATDPKKAE---KGTIRADFADSIDANAVHGS 123
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 82.2 bits (204), Expect = 2e-21
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + F IV + +T +Q FY+EH K F++ LV M SGP +++L ENA
Sbjct: 22 IFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
+ + R+LLG T + ++R Y S T N HGS
Sbjct: 82 VQRHRDLLGATN---PANALAGTLRADYADSLTENGTHGS 118
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 81.4 bits (202), Expect = 4e-21
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + V +++ Q E FY+ HK + F+ LV MISGP + +L ENA
Sbjct: 22 IISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
+ R+++G T A +IR + S +N HGS
Sbjct: 82 VLANRDIMGATNPAQAA---EGTIRKDFATSIDKNTVHGS 118
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 80.6 bits (200), Expect = 8e-21
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
I ++ + Y+EH+ K F+ L+ + SGP I+ AI R+L G
Sbjct: 31 LTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAG 90
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + + P +IRG + + N HGS
Sbjct: 91 GTDP--VQAAAPGTIRGDFALETQFNLVHGS 119
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 79.9 bits (198), Expect = 2e-20
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 18 FHIVES-LTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELL 76
F IV + + E Y EH ++ ++N M+SGP + +AI+K R L
Sbjct: 35 FKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQ 94
Query: 77 GPTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
G T S P +IRG N H S
Sbjct: 95 GNTN---PLASAPGTIRGDLANDIRENLIHAS 123
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 79.1 bits (196), Expect = 3e-20
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F I ++++ E Y+EH++K F+ LV + SGP +L + + R+++G
Sbjct: 30 FRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMG 89
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + + P +IRG + + N HGS
Sbjct: 90 ATH---PKDALPGTIRGDFATTIDENVIHGS 117
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 79.1 bits (196), Expect = 4e-20
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
++ S ++ E YS F++ +V M+SG + ++A++ R+L+G
Sbjct: 34 LYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIG 93
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + + +IRG YG+S +N HGS
Sbjct: 94 ETN---PQAASVGTIRGDYGVSTGKNIIHGS 121
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 78.7 bits (195), Expect = 6e-20
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V +++ + Y + KD+ F+ LV M SGP + N + R +LG
Sbjct: 32 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLG 91
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P +IRG + I RN HGS
Sbjct: 92 ETN---PADSKPGTIRGDFCIQVGRNIIHGS 119
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 78.4 bits (194), Expect = 1e-19
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+ +V T++Q + Y + K FY+ LV+ SGP + + R LLG
Sbjct: 40 YKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLG 99
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P +IRG + + RN HGS
Sbjct: 100 ATN---PADSLPGTIRGDFAVDVGRNVCHGS 127
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 78.0 bits (193), Expect = 1e-19
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F ++ K+ E Y + K F+ L+ + SGP + R+L+G
Sbjct: 34 FKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIG 93
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + P +IRG + RN HGS
Sbjct: 94 KTD---PLQAEPGTIRGDLAVQTGRNIVHGS 121
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 78.0 bits (193), Expect = 1e-19
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V +K E Y EH + F+ L + SGP + N ++ R ++G
Sbjct: 36 FKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMG 95
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
TK S P +IRG +GI RN HGS
Sbjct: 96 VTK---PAESAPGTIRGDFGIDVGRNIIHGS 123
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 78.0 bits (193), Expect = 1e-19
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+ + ++K Y+E F+ LV SGP + NA R++LG
Sbjct: 31 LKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILG 90
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + P +IRG +G+S RNA HGS
Sbjct: 91 ATN---PSDAAPGTIRGDFGVSAGRNAIHGS 118
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 78.5 bits (194), Expect = 1e-19
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V TKQ + Y + K++ F+N L + SGP + E IT R+L+G
Sbjct: 61 FKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIG 120
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + S P +IRG + RN HGS
Sbjct: 121 ATD---PQKSAPGTIRGDLAVVVGRNIIHGS 148
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 77.6 bits (192), Expect = 1e-19
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F++ + + + Y++ DK F+ LV +ISGP + ++ + R ++G
Sbjct: 31 FYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIG 90
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T+ + P +IR Y + RN HGS
Sbjct: 91 ATR---PWEAAPGTIRADYAVEVGRNVIHGS 118
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 77.6 bits (192), Expect = 2e-19
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F + ++ + E Y + K F++ LV ++SGP I +N + R+++G
Sbjct: 30 FTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIG 89
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P +IRG + I RN HGS
Sbjct: 90 ATN---PAASEPGTIRGDFAIDIGRNVIHGS 117
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 78.0 bits (193), Expect = 2e-19
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V + Y + + K FY L+ M SGP + N + R ++G
Sbjct: 53 FTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIG 112
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + + P +IRG + + +RN H S
Sbjct: 113 HTD---SAEAAPGTIRGDFSVHISRNVIHAS 140
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 77.6 bits (192), Expect = 2e-19
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+V + ++ Y+EH+DK F++ LV+ + SGP + +A + R+L+G
Sbjct: 37 LKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMG 96
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T A+ + P +IRG YG N HGS
Sbjct: 97 ATD---AQDAAPGTIRGDYGNDLGHNLIHGS 124
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 77.2 bits (191), Expect = 2e-19
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V TK E Y+EHK++ F+ LV+ + SGP + + + R ++G
Sbjct: 37 FVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIG 96
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P SIRG +G+ RN GS
Sbjct: 97 VTN---PLASAPGSIRGDFGVDVGRNIIGGS 124
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 77.6 bits (192), Expect = 3e-19
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V +++ Y+E +++ FY RLV M SGP + + + R L+G
Sbjct: 50 FKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIG 109
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + P +IRG + I +N HGS
Sbjct: 110 ATN---PADAPPGTIRGDFCIEVGKNLIHGS 137
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 76.8 bits (190), Expect = 3e-19
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V + +T + Y+EH++K F+ LV + SGP + E + R ++G
Sbjct: 30 FQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMG 89
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T+ + P +IRG +G++ +N HGS
Sbjct: 90 KTR---PHEAAPGTIRGDFGVTVAKNIIHGS 117
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 76.8 bits (190), Expect = 3e-19
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+V + + E Y EH+ K FYN L++ + S P ++ E+A+ R ++G
Sbjct: 30 LKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIG 89
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T + P SIRG G++ RN HGS
Sbjct: 90 STN---PSEASPGSIRGDLGLTVGRNIIHGS 117
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 76.5 bits (189), Expect = 5e-19
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+ ++ T++ + Y E D+ F+ LV + GP + + + + R+L+G
Sbjct: 38 YKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIG 97
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S+ +IRG + + ++N HGS
Sbjct: 98 ETN---PLTSNTGTIRGDFCLEVSKNVIHGS 125
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 76.5 bits (189), Expect = 5e-19
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
++ + T Y EHKDK F+ L + GP I AI R L+G
Sbjct: 38 LKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVG 97
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S +IRG +G+ N H S
Sbjct: 98 LTS---PVESAAGTIRGDFGVVKNFNIVHAS 125
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 76.1 bits (188), Expect = 7e-19
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
+ +V + E Y+EH K F+ ++V+ M SGP + ++ + + R +LG
Sbjct: 42 YKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILG 101
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P +IRG +GI RN HGS
Sbjct: 102 ATN---PLGSAPGTIRGDFGIDLGRNVCHGS 129
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 76.5 bits (189), Expect = 8e-19
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLG 77
F +V ++ + Y + KD+ F+ LV M SGP + N + R +LG
Sbjct: 53 FRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLG 112
Query: 78 PTKVYIARFSHPYSIRGMYGISDTRNAAHGS 108
T S P +IRG + I RN HGS
Sbjct: 113 ETN---PADSKPGTIRGDFCIQVGRNIIHGS 140
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 74.6 bits (184), Expect = 3e-18
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + IV + ++ E Y EH++K F+ L+ + P + +L A
Sbjct: 27 IISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYA 86
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGIS---DTRNAAHGS 108
+ R++ G T + + P +IRG +G+ N H S
Sbjct: 87 VEVVRKMAGATD---PKDAAPGTIRGDFGLEVSDAICNVIHAS 126
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 64.4 bits (157), Expect = 5e-14
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 18 FHIVESLTTAMTKQQTEIFYSEH-----KDKFFYNRLVTQMISGPSEINILARENAITKW 72
+V + + + + Y + +N L+ + + P ++ +I
Sbjct: 55 LKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVV 114
Query: 73 RELLGPTKVYIARFSHPYSIRGMYGIS----------DTRNAAHGS 108
R+L G T+ + + P +IRG + N H S
Sbjct: 115 RKLCGATE---PKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHAS 157
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 55.3 bits (133), Expect = 1e-10
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 30 KQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYIARFSHP 89
+ + + LV M SGP+ + +L A+ R+L+GPT + P
Sbjct: 89 RAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTS---PHSAPP 145
Query: 90 YSIRGMYGISDT----------RNAAHGS 108
+IRG Y I N H S
Sbjct: 146 GTIRGDYSIDSPDLAAEEGRVVFNLVHAS 174
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.17
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 20/76 (26%)
Query: 53 MISGPSEINILARENAITKWREL----------LGPTKVYIARFSHPYSIRGMYG--ISD 100
M++ S + A + L + P K+ + RFS + + G +SD
Sbjct: 1 MMTRESI-----DKRAGRRGPNLNIVLTCPECKVYPPKI-VERFSEGDVVCALCGLVLSD 54
Query: 101 TRNAAHGSEWLRDYNH 116
+ SEW R +++
Sbjct: 55 -KLVDTRSEW-RTFSN 68
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA
condensation, DNA-binding, DNA binding protein; 1.70A
{Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A
1udv_A
Length = 89
Score = 28.2 bits (63), Expect = 0.27
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 28 MTKQQTEIFYSEHKDKFFY-NRLVTQMISGPSEINILARENAITK 71
MT++ EI + K+ + ++ G E+ + I+K
Sbjct: 1 MTEKLNEIVVRKTKNVEDHVLDVIVLFNQGIDEVILKGTGREISK 45
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 28.6 bits (65), Expect = 0.50
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 53 MISGPSEINILARENAITKW 72
M +GPSE+ ++A A +
Sbjct: 232 MPAGPSEVLVIADSGATPDF 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.2
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 33/129 (25%)
Query: 19 HIVESLTTAMTKQQT-EIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITK---WRE 74
+ + + ++K++ I S+ RL ++S E+ E + +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93
Query: 75 LLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGS-------------------EWLRDYN 115
L+ P K P + MY + R+ + + L +
Sbjct: 94 LMSPIK---TEQRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 116 HEP--IVHG 122
++ G
Sbjct: 149 PAKNVLIDG 157
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA
condensation, DNA-binding, DNA binding protein; 1.70A
{Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A*
1h0y_A* 1y9x_A
Length = 97
Score = 26.4 bits (58), Expect = 1.8
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 26 TAMTKQQTEIFYSEHKDKFFY-NRLVTQMISGPSEINILARENAITK 71
++ T + + K Y +T + G SEI I AR AI+K
Sbjct: 2 SSGTPTPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISK 48
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.8
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 54 ISGPSEINILARENAITKWRE 74
I+ + +I KWRE
Sbjct: 74 IAQADRLT--QEPESIRKWRE 92
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.9 bits (59), Expect = 2.0
Identities = 21/147 (14%), Positives = 35/147 (23%), Gaps = 58/147 (39%)
Query: 17 QFHIVE------SLTTAMTKQQTEIFYSE---HKDKF--------FYNRLVTQMISGPS- 58
+H + K E S+ KF +Y P
Sbjct: 247 TYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT---------PET 297
Query: 59 EINILARENAITKWRELLG--------------PTKVY-----IARFSHPYSIRGM--YG 97
+ + A + +W E+ V + R + M
Sbjct: 298 QTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLA-------MISGN 350
Query: 98 ISDTRNAAHGS--EW-LRDYNHEPIVH 121
+D R + E L D N +V
Sbjct: 351 FADVREMVYPQFYEHKLNDRNVASMVK 377
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 26.7 bits (59), Expect = 2.4
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 36/105 (34%)
Query: 20 IVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWRELLGPT 79
+T ++ + F+S K+ R V Q I EN W +
Sbjct: 350 TTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIET-------IEENI--GWMD----- 395
Query: 80 KVYIARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRH 124
+N WL+ E + H H
Sbjct: 396 ----------------------KNFDKIRVWLQSEKLERMHHHHH 418
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.6
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 35 IFYSEHKDKFFYNRLVTQMISGPSEINILARENAITKWREL----LGPTKVYIARFSHP 89
S+ +++F +++ P+E A ++ T EL LG Y++ P
Sbjct: 28 FIASQLQEQF------NKILPEPTE--GFAADDEPTTPAELVGKFLG----YVSSLVEP 74
Score = 25.8 bits (56), Expect = 5.8
Identities = 26/163 (15%), Positives = 45/163 (27%), Gaps = 72/163 (44%)
Query: 1 MAAIH-------EKAIQ--NVILSNQFHI-----------V-----ESL----------T 25
M +I + + N L + V +SL
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 26 TAMTKQQTEIFYSEHKDKFFYNRLVTQMISGP--SEINILARENAIT-------KWR--E 74
Q+ I +SE K K F NR + ++ P S + + A + + +
Sbjct: 398 APSGLDQSRIPFSERKLK-FSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 75 LLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHE 117
+ P VY DT + + LR +
Sbjct: 455 IQIP--VY-----------------DTFDGSD----LRVLSGS 474
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 25.7 bits (56), Expect = 6.3
Identities = 21/147 (14%), Positives = 35/147 (23%), Gaps = 58/147 (39%)
Query: 17 QFHIVE------SLTTAMTKQQTEIFYSE---HKDKF--------FYNRLVTQMISGPS- 58
+H + K E S+ KF +Y P
Sbjct: 247 TYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT---------PET 297
Query: 59 EINILARENAITKWRELLG--------------PTKVY-----IARFSHPYSIRGM--YG 97
+ + A + +W E+ V + R + M
Sbjct: 298 QTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLA-------MISGN 350
Query: 98 ISDTRNAAHGS--EW-LRDYNHEPIVH 121
+D R + E L D N +V
Sbjct: 351 FADVREMVYPQFYEHKLNDRNVASMVK 377
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth
regulation, cancer; 1.60A {Homo sapiens} SCOP:
a.116.1.2 PDB: 1wq1_G*
Length = 334
Score = 25.1 bits (54), Expect = 7.5
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 11 NVILSNQFHIVESLTTAMTKQQTE-------IFYSEHKDKFFYNRLVTQMISGPSEINIL 63
+IL + H+V +L+ + +T IF E + L + IS E L
Sbjct: 15 ELILQKELHVVYALSHVCGQDRTLLASILLRIFLHEKLESLLLCTLNDREISMEDEATTL 74
Query: 64 ARENAIT 70
R +
Sbjct: 75 FRATTLA 81
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 25.4 bits (56), Expect = 7.6
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 4/33 (12%)
Query: 77 GPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
P V+ R + I+ H E
Sbjct: 399 LPNSVWNYRVNIIDE----SNIAGGIGVPHTFE 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.397
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,977,519
Number of extensions: 104419
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 49
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)