RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8252
(129 letters)
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 72.3 bits (177), Expect = 7e-18
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I F +V +++ + Y + KD+ F+ LV M SGP + N
Sbjct: 23 IIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R +LG T ++ P +IRG + I RN HGS+
Sbjct: 83 VKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 120
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 72.8 bits (178), Expect = 8e-18
Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 46/144 (31%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKD-------------------------- 42
I + IV + ++ E FY ++
Sbjct: 22 IISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 81
Query: 43 -------KFFYNRLVTQMISGPSEINILARENAITKWRELLGPTKVYIARFSHPYSIRGM 95
+ LV M SGP+ + +L A+ R+L+GPT + A P +IRG
Sbjct: 82 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGD 138
Query: 96 YGISDT----------RNAAHGSE 109
Y I N H S+
Sbjct: 139 YSIDSPDLAAEEGRVVFNLVHASD 162
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 69.3 bits (169), Expect = 8e-17
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + I I ++ + Y+EH+ K F+ L+ + SGP I+ A
Sbjct: 21 IISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 80
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
I R+L G T A + P +IRG + + N HGS+
Sbjct: 81 IAAVRQLAGGTDPVQA--AAPGTIRGDFALETQFNLVHGSD 119
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 69.3 bits (169), Expect = 1e-16
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I F +V +++ Y+E +++ FY RLV M SGP + +
Sbjct: 24 IVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDV 83
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R L+G T A P +IRG + I +N HGS+
Sbjct: 84 VRTSRALIGATNPADAP---PGTIRGDFCIEVGKNLIHGSD 121
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 68.5 bits (167), Expect = 2e-16
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 5 HEKAIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILA 64
I F I ++++ E Y+EH++K F+ LV + SGP +L
Sbjct: 17 LVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLE 76
Query: 65 RENAITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ + R+++G T A P +IRG + + N HGS
Sbjct: 77 GPGVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSA 118
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 67.0 bits (163), Expect = 9e-16
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 8 AIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILAREN 67
I + + +V + ++ Y+EH+DK F++ LV+ + SGP + +
Sbjct: 21 DIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGAD 80
Query: 68 AITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
A + R+L+G T A P +IRG YG N HGS+
Sbjct: 81 ATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSD 119
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 64.6 bits (157), Expect = 8e-15
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + F +V TKQ + Y + K++ F+N L + SGP + E
Sbjct: 23 IISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGV 82
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
IT R+L+G T + P +IRG + RN HGS+
Sbjct: 83 ITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSD 120
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 63.9 bits (155), Expect = 1e-14
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
+ F +V + Y + + K FY L+ M SGP + N
Sbjct: 25 VIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 84
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R ++G T A P +IRG + + +RN H S+
Sbjct: 85 VRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASD 122
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 63.5 bits (154), Expect = 1e-14
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 8 AIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILAREN 67
I + V +++ Q E FY+ HK + F+ LV MISGP + +L EN
Sbjct: 21 KIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGEN 80
Query: 68 AITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
A+ R+++G T A +IR + S +N HGS+
Sbjct: 81 AVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSD 119
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 61.2 bits (148), Expect = 8e-14
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 9 IQNVILSNQFHIVES-LTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILAREN 67
I I F IV + + E Y EH ++ ++N M+SGP + +
Sbjct: 20 IMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD 79
Query: 68 AITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
AI+K R L G P +IRG N H S+
Sbjct: 80 AISKIRRLQGNI-------LTPGTIRGDLANDIRENLIHASD 114
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 60.4 bits (146), Expect = 2e-13
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + ++ T++ + Y E D+ F+ LV + GP + +
Sbjct: 21 IIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM 80
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ + R+L+G T + + +IRG + + ++N HGS+
Sbjct: 81 VKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSD 118
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 60.1 bits (145), Expect = 4e-13
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 8 AIQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILAREN 67
+ F + ++ + E Y + K F++ LV ++SGP I +N
Sbjct: 20 EVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKN 79
Query: 68 AITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R+++G T + P +IRG + I RN HGS+
Sbjct: 80 VVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSD 118
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 60.0 bits (145), Expect = 4e-13
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I F +V TK E Y+EHK++ F+ LV+ + SGP + +
Sbjct: 23 IIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 82
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R ++G T S P SIRG +G+ RN GS+
Sbjct: 83 VASARLMIGVTN---PLASAPGSIRGDFGVDVGRNIIAGSD 120
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 59.3 bits (143), Expect = 6e-13
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
+ S + + ++K Y+E F+ LV SGP + NA
Sbjct: 21 VVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 80
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
R++LG T A P +IRG +G+S RNA HGS+
Sbjct: 81 AATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSD 118
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 58.5 bits (141), Expect = 2e-12
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + F ++ K+ E Y + K F+ L+ + SGP
Sbjct: 25 IISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGV 84
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSE 109
+ R+L+G T A P +IRG + RN HGS+
Sbjct: 85 VASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSD 122
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 56.6 bits (136), Expect = 1e-11
Identities = 22/109 (20%), Positives = 38/109 (34%)
Query: 9 IQNVILSNQFHIVESLTTAMTKQQTEIFYSEHKDKFFYNRLVTQMISGPSEINILARENA 68
I + IV + ++ E Y EH++K F+ L+ + P + +L A
Sbjct: 22 IISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYA 81
Query: 69 ITKWRELLGPTKVYIARFSHPYSIRGMYGISDTRNAAHGSEWLRDYNHE 117
+ R++ G T A G+ N H S+ E
Sbjct: 82 VEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAERE 130
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.4 bits (58), Expect = 0.45
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 57 PSEINILARENAITKWREL---LGPTKVYIARFSH 88
P+ + + +W+E LG + I R
Sbjct: 1 PATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLEL 35
>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 87
Score = 25.5 bits (56), Expect = 0.94
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 41 KDKFFY-NRLVTQMISGPSEINILARENAITK 71
K Y +TQ+ G E+ I AR AI++
Sbjct: 9 KPVMNYVLATLTQLNEGADEVVIKARGRAISR 40
>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 25.3 bits (55), Expect = 2.7
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 15 SNQFHIVESLTTAMTKQQTE--------IFYSEHKDKFFYNRLVTQMISGPSEINILARE 66
+ I +L + Q + +F S H + ++ + + L R
Sbjct: 13 QGELPIAMALANVVPCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRG 72
Query: 67 NAI 69
N++
Sbjct: 73 NSL 75
>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 99
Score = 24.4 bits (53), Expect = 3.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 41 KDKFFYNRLVTQMISGPSEINILARENAITK 71
K FFY L + + +++ + A AI
Sbjct: 12 KPLFFYVNLAKRYMQQYNDVELSALGMAIAT 42
>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon
Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}
Length = 89
Score = 23.9 bits (52), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 50 VTQMISGPSEINILARENAITK 71
+T + G SEI I AR AI+K
Sbjct: 19 LTLLNQGVSEIVIKARGRAISK 40
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 25.1 bits (54), Expect = 3.5
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 88 HPYSIRGMYGISDTRNAAHG-SEWLRDYN 115
HP S G YGI D A +WL
Sbjct: 32 HPTSFPGPYGIGDLGPQAFKFLDWLHLAG 60
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Length = 209
Score = 24.1 bits (52), Expect = 5.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 90 YSIRGMYGISDTRNAAHGSEWLRDYNHEPIVHGRHTG 126
Y+I G++ ++ + H P VHG H+
Sbjct: 61 YAIAHNRGVTSIEGLKQITKEVASKGHLPSVHGDHSS 97
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
[TaxId: 63363]}
Length = 485
Score = 24.2 bits (52), Expect = 5.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 88 HPYSIRGMYGISDTRNAAH 106
H S+ YGI D A+
Sbjct: 9 HVTSLPSPYGIGDLGKEAY 27
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 24.2 bits (52), Expect = 6.1
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 88 HPYSIRGMYGISDTRNAAHG-SEWLRD 113
HP S+ G YG+ A +L++
Sbjct: 12 HPTSLPGPYGVGVLGREARDFLRFLKE 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.397
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 474,341
Number of extensions: 18986
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 30
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)