BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8253
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
          Histone H1k26 Peptide
 pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
          Histone H3k9 Peptide
 pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
          Histone H4k20 Peptide
 pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
          Length = 365

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 11 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 70

Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIR 97


>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
 pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
 pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
          Length = 366

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 71

Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIR 98


>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
          Histone H3k27 Peptide
          Length = 365

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 11 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 70

Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIR 97


>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
          Length = 361

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 7  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 66

Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 67 FYTCAWTYDSNTSHPLLAVAGSRGIIR 93


>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
           Eed-Ezh2 Polycomb Complex
 pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
 pdb|3JZH|A Chain A, Eed-H3k79me3
          Length = 402

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 48  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 107

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 108 FYTCAWTYDSNTSHPLLAVAGSRGIIR 134


>pdb|4A3U|A Chain A, X-Structure Of  The Old Yellow Enzyme Homologue From
           Zymomonas Mobilis (Ncr)
 pdb|4A3U|B Chain B, X-Structure Of  The Old Yellow Enzyme Homologue From
           Zymomonas Mobilis (Ncr)
          Length = 358

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 19  LLKDDQPRIFATVGSNRVSIYECPDG 44
           LLKD   R+ AT+G  R ++   P+G
Sbjct: 204 LLKDVTERVIATIGKERTAVRLSPNG 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,939,520
Number of Sequences: 62578
Number of extensions: 111806
Number of successful extensions: 246
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)