BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8253
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16023|ESC_MUSDO Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1
Length = 428
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 65/88 (73%)
Query: 1 CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
C KEDHGQ +FG FNHLL DQ +FAT GSNR +IYECP G +KL+ CYADPD +E
Sbjct: 67 CHLKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNRCNIYECPRKGGLKLIMCYADPDPDE 126
Query: 61 NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTC+WS DL++ PLLA AG R VIR
Sbjct: 127 VFYTCSWSYDLKTSAPLLATAGYRGVIR 154
>sp|Q566T0|EED_DANRE Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2
Length = 443
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 65/87 (74%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDHGQPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 89 SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 148
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D S PLLAVAGSR +IR
Sbjct: 149 FYTCAWTFDCSSSHPLLAVAGSRGIIR 175
>sp|Q5ZKH3|EED_CHICK Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1
Length = 446
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 65/87 (74%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDHGQPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 92 SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 151
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 152 FYTCAWTYDSNTSHPLLAVAGSRGIIR 178
>sp|Q24338|ESC_DROME Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1
Length = 425
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
KE+HG +FG FN LL D+P++FAT GSNRV++YECP G ++LL CYADPD +E FY
Sbjct: 69 KENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFY 128
Query: 64 TCAWSMDLESGRPLLAVAGSRAVIR 88
TCAWS DL++ PLLA AG R VIR
Sbjct: 129 TCAWSYDLKTSSPLLAAAGYRGVIR 153
>sp|Q3SZ25|EED_BOVIN Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1
Length = 441
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173
>sp|Q921E6|EED_MOUSE Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1
Length = 441
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173
>sp|O75530|EED_HUMAN Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2
Length = 441
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173
>sp|Q28DT7|EED_XENTR Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1
Length = 438
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGEIRLLQSYVDADADEN 143
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170
>sp|Q6AZS2|EEDB_XENLA Polycomb protein eed-B OS=Xenopus laevis GN=eed-b PE=1 SV=2
Length = 438
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170
>sp|Q8UUP2|EEDA_XENLA Polycomb protein eed-A OS=Xenopus laevis GN=eed-a PE=1 SV=1
Length = 438
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
S KEDH QPLFG QFN K+ P +FATVGSNRV++YEC G I+LLQ Y D D +EN
Sbjct: 84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
FYTCAW+ D + PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170
>sp|Q26458|ESC_DROVI Polycomb protein esc OS=Drosophila virilis GN=esc PE=3 SV=1
Length = 425
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 63/85 (74%)
Query: 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
KE+HG +FG FN LL D+P++FAT GSNR ++YECP G + LL CYADPD +E FY
Sbjct: 69 KENHGANIFGVSFNTLLGKDEPQVFATAGSNRCTVYECPRKGGLTLLHCYADPDPDEVFY 128
Query: 64 TCAWSMDLESGRPLLAVAGSRAVIR 88
TCAWS DL++ PLLA AG R VIR
Sbjct: 129 TCAWSYDLKTSAPLLAAAGYRGVIR 153
>sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1
Length = 379
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 1 CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
C + +PL+ FN + +FATVG NRV+ Y C + GS LLQ Y D D +E
Sbjct: 30 CGKHTEGKRPLYAIGFN-FMDARYYDVFATVGGNRVTTYRCLENGSFALLQAYVDEDKDE 88
Query: 61 NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
+FYT +W+ D G PLL AGS +IR
Sbjct: 89 SFYTLSWARDHVDGSPLLVAAGSNGIIR 116
>sp|Q9LT47|FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM
OS=Arabidopsis thaliana GN=FIE PE=1 SV=2
Length = 369
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYT 64
++ +PL+ FN L +F T G NR+++Y C G+I LQ YAD D EE+FYT
Sbjct: 30 QEGKKPLYAVVFN-FLDARFFDVFVTAGGNRITLYNCLGDGAISALQSYADEDKEESFYT 88
Query: 65 CAWSMDLESGRPLLAVAGSRAVIR 88
+W+ + +G P +A G + +IR
Sbjct: 89 VSWACGV-NGNPYVAAGGVKGIIR 111
>sp|Q8VZY7|FIE1_MAIZE Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1
Length = 461
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWS 68
P++ FN + +FA N V IY C + G LLQ Y D D +E+FYT +W+
Sbjct: 96 HPIYAIGFN-FIDMRYYDVFAIASCNSVIIYRCLENGGFGLLQNYVDEDKDESFYTLSWT 154
Query: 69 MDLESGRPLLAVAGSRAVIR 88
+D PLL AGS +IR
Sbjct: 155 IDQVDSSPLLVAAGSNRIIR 174
>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=utp13 PE=3 SV=3
Length = 777
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 20 LKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79
+ D ++ A S ++IYE P G IK ++ + P I +M ++ LLA
Sbjct: 69 ITSDSKKLIAAFRSRLLTIYEIPSGRRIKSMKAHETPVI---------TMTIDPTNTLLA 119
Query: 80 VAGSRAVIR 88
G+ +++
Sbjct: 120 TGGAEGLVK 128
>sp|Q9GYS1|MES6_CAEEL Polycomb protein mes-6 OS=Caenorhabditis elegans GN=mes-6 PE=1 SV=2
Length = 459
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECP-DGGSIKLLQCYADP------- 56
ED + ++G FN D+ + ATVG + + +Y P D +I+L P
Sbjct: 35 EDQKKAIYGCAFNQYAGIDEEQAVATVGGSFLHMYSVPIDINNIELQWSCNFPTDKSSKV 94
Query: 57 DIEENFYTCAWSMDL---ESGR-PLLAVAG 82
+ EE+ +T W D E+ R P V G
Sbjct: 95 EREESLFTVTWCYDTYEAENDRNPFKVVTG 124
>sp|A5I2T7|Y1815_CLOBH UPF0597 protein CBO1815/CLC_1757 OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=CBO1815 PE=3
SV=1
Length = 426
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83
A++ + YE GG IK ++ ADP + +N ++CA E G + A+ G+
Sbjct: 24 ASIALSSAKAYEVI-GGEIKNIKIIADPGLFKNAFSCAIPGTKEVGNEMAALLGT 77
>sp|A7FUM5|Y1750_CLOB1 UPF0597 protein CLB_1750 OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=CLB_1750 PE=3 SV=1
Length = 426
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83
A++ + YE GG IK ++ ADP + +N ++CA E G + A+ G+
Sbjct: 24 ASIALSSAKAYEVI-GGEIKNIKIIADPGLFKNAFSCAIPGTKEVGNEMAALLGT 77
>sp|B1IM83|Y2825_CLOBK UPF0597 protein CLD_2825 OS=Clostridium botulinum (strain Okra /
Type B1) GN=CLD_2825 PE=3 SV=1
Length = 426
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83
A++ + YE GG IK ++ ADP + +N ++CA E G + A+ G+
Sbjct: 24 ASIALSSAKAYEVI-GGEIKNIKIIADPGLFKNAFSCAIPGTKEVGNEMAALLGA 77
>sp|A7GE60|Y1810_CLOBL UPF0597 protein CLI_1810 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=CLI_1810 PE=3 SV=1
Length = 426
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83
A++ + YE GG IK ++ ADP + +N ++CA E G + A+ G+
Sbjct: 24 ASIALSSAKAYEVI-GGEIKNIKIIADPGLFKNAFSCAIPGTKEVGNEMAALLGA 77
>sp|B1KSB9|Y1197_CLOBM UPF0597 protein CLK_1197 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=CLK_1197 PE=3 SV=1
Length = 426
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83
A++ + YE GG IK ++ ADP + +N ++CA E G + A+ G+
Sbjct: 24 ASIALSSAKAYEVI-GGEIKNIKIIADPGLFKNAFSCAIPGTKEVGNEMAALLGA 77
>sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein 14 OS=Mus musculus
GN=Zcchc14 PE=2 SV=1
Length = 956
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 41 CPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86
CP+ KL+ C A PD +FY +DLE+G LA A S +
Sbjct: 154 CPEENLDKLIPCLAGPD---SFYVERNHVDLEAGLRFLASAPSHTL 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,321,532
Number of Sequences: 539616
Number of extensions: 1354961
Number of successful extensions: 2297
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 22
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)