Query psy8253
Match_columns 88
No_of_seqs 103 out of 153
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:37:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1034|consensus 100.0 3.6E-30 7.8E-35 192.4 10.0 87 2-88 32-118 (385)
2 KOG0277|consensus 99.2 4.2E-11 9.2E-16 88.2 7.4 77 6-88 6-86 (311)
3 KOG0264|consensus 98.3 4.1E-06 9E-11 65.0 7.9 74 3-87 267-341 (422)
4 KOG0645|consensus 98.1 4.1E-05 8.8E-10 57.1 9.2 76 3-87 9-85 (312)
5 KOG2445|consensus 98.0 3.2E-05 6.9E-10 58.6 8.1 77 6-85 167-249 (361)
6 KOG0273|consensus 98.0 4.8E-05 1E-09 60.0 8.4 85 4-88 272-435 (524)
7 PTZ00421 coronin; Provisional 97.9 0.00012 2.6E-09 57.7 9.2 75 5-88 72-151 (493)
8 KOG0296|consensus 97.9 9.5E-05 2.1E-09 56.8 8.2 71 4-88 60-131 (399)
9 KOG0318|consensus 97.8 7.2E-05 1.6E-09 59.7 7.4 72 4-87 186-259 (603)
10 PTZ00421 coronin; Provisional 97.8 0.00026 5.7E-09 55.8 9.8 71 5-88 122-193 (493)
11 KOG0272|consensus 97.7 8.5E-05 1.9E-09 57.9 5.7 73 2-88 297-370 (459)
12 PTZ00420 coronin; Provisional 97.7 0.00043 9.3E-09 55.7 9.8 75 5-88 71-151 (568)
13 KOG2445|consensus 97.6 0.00055 1.2E-08 52.0 9.1 76 6-88 221-313 (361)
14 cd00200 WD40 WD40 domain, foun 97.6 0.00062 1.3E-08 45.2 8.3 69 6-88 217-286 (289)
15 KOG0277|consensus 97.5 0.0008 1.7E-08 50.1 7.9 72 5-88 144-216 (311)
16 KOG1007|consensus 97.4 0.00073 1.6E-08 51.2 7.3 74 4-87 254-355 (370)
17 cd00200 WD40 WD40 domain, foun 97.3 0.0038 8.3E-08 41.3 8.9 70 5-88 6-76 (289)
18 KOG0271|consensus 97.3 0.00076 1.6E-08 52.6 6.2 71 4-88 111-182 (480)
19 PTZ00420 coronin; Provisional 97.3 0.0024 5.2E-08 51.5 9.0 70 5-88 122-192 (568)
20 PF00400 WD40: WD domain, G-be 97.2 0.0018 3.8E-08 33.1 5.0 35 48-88 2-36 (39)
21 KOG0302|consensus 97.1 0.003 6.4E-08 49.1 7.8 57 23-88 268-327 (440)
22 PLN00181 protein SPA1-RELATED; 97.1 0.0062 1.3E-07 49.8 9.8 72 4-88 571-643 (793)
23 KOG0290|consensus 97.1 0.0049 1.1E-07 46.8 8.3 74 6-86 194-311 (364)
24 KOG0264|consensus 97.0 0.0017 3.7E-08 50.7 5.4 76 3-88 222-298 (422)
25 KOG0322|consensus 97.0 0.00086 1.9E-08 50.2 3.6 56 23-87 261-317 (323)
26 KOG1587|consensus 96.9 0.0022 4.9E-08 51.6 5.6 71 5-87 395-466 (555)
27 KOG0316|consensus 96.9 0.0068 1.5E-07 45.0 7.6 57 23-88 69-126 (307)
28 KOG0266|consensus 96.9 0.0095 2.1E-07 46.2 8.8 71 5-88 200-271 (456)
29 PF00400 WD40: WD domain, G-be 96.8 0.005 1.1E-07 31.3 4.7 33 3-40 6-39 (39)
30 KOG0319|consensus 96.8 0.0087 1.9E-07 49.5 8.1 71 4-88 501-572 (775)
31 KOG0310|consensus 96.8 0.0095 2.1E-07 47.2 8.0 74 4-88 106-179 (487)
32 PF08662 eIF2A: Eukaryotic tra 96.8 0.011 2.4E-07 40.9 7.7 61 6-83 57-120 (194)
33 KOG0310|consensus 96.7 0.0026 5.7E-08 50.3 4.5 67 9-88 27-93 (487)
34 KOG2110|consensus 96.6 0.02 4.2E-07 44.3 8.8 71 5-87 170-242 (391)
35 KOG1538|consensus 96.6 0.006 1.3E-07 50.7 6.2 63 9-85 13-75 (1081)
36 KOG0263|consensus 96.6 0.0085 1.8E-07 49.4 6.7 73 2-88 571-644 (707)
37 KOG0266|consensus 96.5 0.026 5.7E-07 43.7 9.0 71 4-88 242-313 (456)
38 KOG0303|consensus 96.5 0.017 3.6E-07 45.3 7.7 76 5-88 78-198 (472)
39 PLN00181 protein SPA1-RELATED; 96.5 0.03 6.5E-07 45.9 9.5 69 8-88 532-601 (793)
40 KOG0318|consensus 96.5 0.019 4.1E-07 46.3 8.1 72 3-87 482-554 (603)
41 KOG0263|consensus 96.5 0.0047 1E-07 50.9 4.7 71 4-88 489-560 (707)
42 KOG1332|consensus 96.4 0.011 2.4E-07 43.9 5.8 74 4-87 203-280 (299)
43 KOG0284|consensus 96.4 0.0028 6E-08 49.6 2.7 71 5-88 261-332 (464)
44 KOG0772|consensus 96.2 0.0087 1.9E-07 48.2 4.9 75 6-88 266-342 (641)
45 KOG0319|consensus 96.0 0.033 7.2E-07 46.2 7.3 71 4-88 459-530 (775)
46 KOG2394|consensus 96.0 0.0079 1.7E-07 48.6 3.5 64 10-87 292-356 (636)
47 KOG1009|consensus 95.9 0.032 7E-07 43.6 6.7 73 5-86 62-146 (434)
48 KOG0273|consensus 95.9 0.068 1.5E-06 42.6 8.5 74 5-87 398-476 (524)
49 KOG0641|consensus 95.9 0.072 1.6E-06 39.6 7.9 69 9-88 33-114 (350)
50 KOG1445|consensus 95.8 0.028 6.1E-07 46.7 6.1 74 7-88 626-745 (1012)
51 KOG0272|consensus 95.8 0.027 5.9E-07 44.3 5.8 72 4-88 341-413 (459)
52 KOG0315|consensus 95.8 0.11 2.5E-06 38.8 8.8 71 5-88 212-283 (311)
53 KOG0268|consensus 95.7 0.017 3.6E-07 44.9 4.0 74 2-88 266-340 (433)
54 KOG0271|consensus 95.6 0.1 2.3E-06 41.0 8.3 75 4-88 196-271 (480)
55 KOG1310|consensus 95.6 0.025 5.4E-07 46.2 5.0 77 2-88 87-173 (758)
56 KOG2111|consensus 95.6 0.16 3.6E-06 38.8 9.1 71 5-87 178-250 (346)
57 KOG0645|consensus 95.6 0.14 3E-06 38.6 8.5 75 3-88 100-175 (312)
58 KOG0293|consensus 95.6 0.085 1.8E-06 41.8 7.7 62 2-70 218-280 (519)
59 KOG1273|consensus 95.6 0.031 6.7E-07 43.0 5.1 65 11-88 26-90 (405)
60 KOG0973|consensus 95.4 0.044 9.5E-07 46.7 6.1 74 6-87 263-349 (942)
61 KOG0265|consensus 95.4 0.14 2.9E-06 39.0 8.1 72 3-88 42-115 (338)
62 KOG1009|consensus 95.2 0.15 3.2E-06 40.0 8.0 73 7-87 12-89 (434)
63 KOG0276|consensus 95.2 0.13 2.8E-06 42.6 7.8 76 2-88 134-210 (794)
64 PF08662 eIF2A: Eukaryotic tra 94.9 0.33 7.1E-06 33.6 8.5 60 7-82 99-162 (194)
65 KOG0315|consensus 94.8 0.11 2.5E-06 38.8 6.0 58 24-88 51-108 (311)
66 KOG0279|consensus 94.5 0.25 5.4E-06 37.3 7.3 68 8-87 148-216 (315)
67 KOG1332|consensus 94.4 0.12 2.5E-06 38.6 5.3 76 5-88 53-129 (299)
68 KOG0647|consensus 94.3 0.13 2.8E-06 39.3 5.5 70 8-88 27-97 (347)
69 KOG0293|consensus 94.3 0.12 2.7E-06 40.9 5.5 70 5-87 266-336 (519)
70 KOG0301|consensus 94.2 0.22 4.8E-06 41.3 7.0 66 6-88 217-283 (745)
71 KOG1274|consensus 94.2 0.37 8E-06 41.1 8.4 76 3-87 133-256 (933)
72 KOG0307|consensus 94.2 0.054 1.2E-06 46.5 3.5 73 4-87 112-186 (1049)
73 KOG0284|consensus 94.1 0.1 2.2E-06 41.1 4.6 69 6-88 178-247 (464)
74 KOG0641|consensus 93.7 0.49 1.1E-05 35.3 7.4 70 5-83 86-160 (350)
75 KOG0279|consensus 93.6 0.52 1.1E-05 35.6 7.5 75 2-88 99-175 (315)
76 KOG0290|consensus 93.3 0.43 9.4E-06 36.5 6.7 80 5-88 93-222 (364)
77 KOG0647|consensus 93.3 0.88 1.9E-05 34.8 8.3 73 4-88 68-140 (347)
78 KOG1063|consensus 93.2 0.25 5.4E-06 41.1 5.7 77 5-87 615-693 (764)
79 KOG4378|consensus 93.1 0.33 7.2E-06 39.4 6.2 72 2-87 202-274 (673)
80 KOG0305|consensus 93.0 0.61 1.3E-05 37.3 7.5 57 4-70 339-398 (484)
81 KOG0305|consensus 92.8 0.46 1E-05 38.0 6.5 61 19-88 182-242 (484)
82 KOG1524|consensus 92.8 0.64 1.4E-05 38.2 7.3 67 6-86 143-209 (737)
83 KOG0268|consensus 92.7 0.37 8.1E-06 37.7 5.7 34 10-47 189-223 (433)
84 smart00320 WD40 WD40 repeats. 92.6 0.48 1E-05 21.3 4.6 27 58-88 11-37 (40)
85 KOG0269|consensus 92.5 0.22 4.9E-06 41.8 4.5 67 10-88 178-245 (839)
86 KOG1407|consensus 92.4 1.1 2.5E-05 33.7 7.8 23 58-84 271-293 (313)
87 KOG1587|consensus 92.1 1.2 2.6E-05 36.1 8.3 76 7-88 241-318 (555)
88 KOG0291|consensus 92.1 1.1 2.3E-05 38.0 7.9 72 6-88 94-170 (893)
89 KOG0269|consensus 92.0 0.13 2.8E-06 43.2 2.6 67 13-88 92-159 (839)
90 TIGR03866 PQQ_ABC_repeats PQQ- 92.0 1.2 2.5E-05 30.6 7.1 54 26-88 220-274 (300)
91 KOG4328|consensus 91.8 0.38 8.3E-06 38.3 5.0 73 5-88 319-394 (498)
92 PF15390 DUF4613: Domain of un 91.7 2.3 5E-05 35.2 9.3 34 10-43 58-91 (671)
93 KOG1645|consensus 91.6 0.46 1E-05 37.5 5.1 69 7-87 192-260 (463)
94 COG2319 FOG: WD40 repeat [Gene 91.6 2.7 5.8E-05 28.7 8.4 72 4-88 151-224 (466)
95 PF12894 Apc4_WD40: Anaphase-p 91.4 0.48 1E-05 26.1 3.8 29 55-87 7-35 (47)
96 KOG2055|consensus 91.3 2.1 4.6E-05 34.3 8.6 66 10-87 346-411 (514)
97 KOG1445|consensus 91.0 0.32 6.9E-06 40.7 3.9 76 5-88 76-195 (1012)
98 KOG0283|consensus 91.0 0.66 1.4E-05 38.7 5.7 36 3-43 262-298 (712)
99 KOG0973|consensus 90.8 1.6 3.4E-05 37.6 7.8 72 5-87 66-153 (942)
100 TIGR03866 PQQ_ABC_repeats PQQ- 90.1 2.1 4.5E-05 29.4 6.9 54 26-88 2-56 (300)
101 KOG1523|consensus 89.4 2.3 4.9E-05 32.8 7.1 70 3-87 50-124 (361)
102 KOG0288|consensus 89.2 1.8 3.8E-05 34.3 6.5 62 12-85 391-453 (459)
103 KOG0270|consensus 88.9 1.8 3.8E-05 34.5 6.3 74 4-88 369-444 (463)
104 KOG0772|consensus 88.5 1 2.2E-05 36.8 4.8 72 8-88 317-389 (641)
105 PF14157 YmzC: YmzC-like prote 88.3 1.8 3.8E-05 25.7 4.6 31 24-54 28-60 (63)
106 KOG1539|consensus 87.9 2.1 4.4E-05 36.6 6.4 53 27-87 216-269 (910)
107 KOG1007|consensus 87.9 1.8 3.9E-05 33.2 5.6 75 2-87 208-283 (370)
108 KOG2106|consensus 87.8 7.3 0.00016 31.9 9.2 58 3-70 443-502 (626)
109 KOG2048|consensus 87.6 5.9 0.00013 33.1 8.7 71 5-88 107-179 (691)
110 KOG0302|consensus 87.5 1.4 3E-05 34.7 4.9 74 4-85 343-431 (440)
111 KOG0282|consensus 87.3 1.4 3E-05 35.3 4.9 72 3-88 253-325 (503)
112 KOG0640|consensus 87.2 3 6.6E-05 32.4 6.5 67 10-88 218-286 (430)
113 KOG1063|consensus 87.1 1.9 4E-05 36.2 5.7 73 5-88 569-643 (764)
114 KOG0286|consensus 87.1 5.6 0.00012 30.5 7.8 61 2-70 223-284 (343)
115 KOG4283|consensus 86.8 2.5 5.3E-05 32.6 5.8 69 5-85 98-167 (397)
116 KOG0307|consensus 86.5 0.97 2.1E-05 39.2 3.9 72 3-87 248-321 (1049)
117 KOG0295|consensus 86.2 1.9 4.2E-05 33.6 5.1 61 23-88 245-317 (406)
118 KOG2111|consensus 85.8 4.2 9.2E-05 31.3 6.7 59 8-71 226-304 (346)
119 KOG0313|consensus 85.5 4 8.7E-05 32.1 6.5 59 25-88 312-371 (423)
120 KOG1407|consensus 84.8 6.7 0.00014 29.7 7.2 70 5-87 144-213 (313)
121 KOG4532|consensus 84.4 8.5 0.00018 29.4 7.6 58 24-87 169-227 (344)
122 KOG1523|consensus 84.3 2.7 5.9E-05 32.4 5.0 69 7-88 99-171 (361)
123 KOG1036|consensus 84.0 8.1 0.00018 29.5 7.4 37 3-44 49-85 (323)
124 KOG2055|consensus 83.7 3.2 6.8E-05 33.4 5.3 72 8-88 257-328 (514)
125 KOG0640|consensus 83.7 5 0.00011 31.2 6.2 73 5-88 109-197 (430)
126 KOG0291|consensus 83.6 14 0.0003 31.6 9.1 70 5-88 347-417 (893)
127 KOG1538|consensus 83.5 5.5 0.00012 33.9 6.8 71 7-87 175-246 (1081)
128 KOG0316|consensus 83.3 4 8.7E-05 30.6 5.5 70 5-88 98-168 (307)
129 KOG0265|consensus 83.2 7.6 0.00016 29.8 7.0 70 6-88 88-158 (338)
130 KOG0649|consensus 82.9 14 0.0003 28.0 8.1 29 5-40 59-87 (325)
131 KOG1036|consensus 82.5 6.2 0.00013 30.2 6.3 66 8-88 13-78 (323)
132 KOG0285|consensus 82.3 10 0.00022 30.0 7.5 71 4-88 147-218 (460)
133 KOG0283|consensus 81.6 6.6 0.00014 33.0 6.7 69 6-88 407-476 (712)
134 KOG0308|consensus 81.4 10 0.00022 31.8 7.6 69 6-88 169-238 (735)
135 KOG1034|consensus 80.4 6.5 0.00014 30.6 5.8 74 5-88 132-206 (385)
136 KOG0771|consensus 80.3 4.1 8.8E-05 32.0 4.8 59 6-72 184-242 (398)
137 KOG0389|consensus 80.1 0.4 8.6E-06 40.8 -0.8 36 11-46 853-889 (941)
138 KOG0321|consensus 79.8 4.8 0.0001 33.6 5.2 72 6-87 98-169 (720)
139 KOG1517|consensus 79.7 3.6 7.7E-05 36.4 4.6 67 12-88 1068-1136(1387)
140 KOG4283|consensus 79.5 5.8 0.00013 30.6 5.3 67 10-88 145-214 (397)
141 KOG1524|consensus 78.9 5.5 0.00012 32.9 5.2 56 6-87 225-280 (737)
142 PRK11028 6-phosphogluconolacto 78.6 13 0.00027 26.9 6.8 27 28-54 6-32 (330)
143 KOG3621|consensus 78.4 4 8.6E-05 34.2 4.4 57 26-87 90-148 (726)
144 KOG0286|consensus 78.4 18 0.0004 27.7 7.6 72 4-88 182-254 (343)
145 KOG0294|consensus 77.9 9.7 0.00021 29.4 6.1 69 5-87 40-109 (362)
146 PF11768 DUF3312: Protein of u 77.7 14 0.00029 30.3 7.1 66 7-87 258-323 (545)
147 KOG0650|consensus 76.6 4.8 0.0001 33.5 4.4 60 24-88 661-730 (733)
148 PF15492 Nbas_N: Neuroblastoma 75.2 23 0.00049 26.7 7.3 61 23-88 7-68 (282)
149 PRK11028 6-phosphogluconolacto 75.0 28 0.00061 25.1 7.8 64 14-87 233-298 (330)
150 PRK01742 tolB translocation pr 74.5 21 0.00045 27.3 7.2 66 6-85 201-270 (429)
151 PF04762 IKI3: IKI3 family; I 74.3 37 0.0008 29.3 9.2 55 24-87 87-144 (928)
152 PF14781 BBS2_N: Ciliary BBSom 73.9 24 0.00053 23.8 8.1 70 8-83 47-116 (136)
153 KOG0639|consensus 73.9 8.2 0.00018 31.8 5.0 65 5-84 630-695 (705)
154 PF11768 DUF3312: Protein of u 73.6 8.7 0.00019 31.4 5.1 47 36-88 238-284 (545)
155 KOG0296|consensus 73.1 35 0.00075 26.9 8.0 68 6-87 325-392 (399)
156 KOG0270|consensus 72.6 34 0.00073 27.5 8.0 73 3-88 281-355 (463)
157 KOG0285|consensus 71.1 8.4 0.00018 30.4 4.3 69 6-88 191-260 (460)
158 PRK05137 tolB translocation pr 70.9 39 0.00084 25.8 8.0 66 6-85 199-268 (435)
159 KOG0650|consensus 70.6 35 0.00076 28.7 7.9 64 7-83 399-463 (733)
160 KOG4640|consensus 69.8 22 0.00049 29.7 6.7 63 11-88 23-87 (665)
161 KOG0282|consensus 69.5 4.7 0.0001 32.5 2.7 72 5-88 211-283 (503)
162 KOG2106|consensus 69.1 59 0.0013 26.9 8.8 56 10-70 202-257 (626)
163 KOG2110|consensus 69.0 44 0.00095 26.3 7.8 46 33-87 152-197 (391)
164 KOG4227|consensus 68.5 62 0.0013 26.2 8.7 25 58-85 193-217 (609)
165 KOG0275|consensus 68.1 5.4 0.00012 31.2 2.7 76 3-88 208-288 (508)
166 KOG0313|consensus 68.0 19 0.00041 28.5 5.6 69 6-88 343-413 (423)
167 PF12228 DUF3604: Protein of u 68.0 9.5 0.00021 31.5 4.2 24 47-70 470-495 (592)
168 KOG2919|consensus 67.2 5.4 0.00012 31.1 2.6 36 5-45 337-372 (406)
169 KOG0292|consensus 65.1 24 0.00052 31.0 6.1 36 4-44 47-83 (1202)
170 KOG4532|consensus 65.0 24 0.00052 27.0 5.5 52 2-55 244-295 (344)
171 KOG0292|consensus 65.0 26 0.00056 30.8 6.3 75 2-88 200-275 (1202)
172 KOG0299|consensus 64.4 31 0.00068 27.7 6.4 56 6-66 200-263 (479)
173 KOG0300|consensus 64.4 36 0.00078 26.7 6.5 70 3-86 143-213 (481)
174 KOG4578|consensus 63.2 11 0.00023 29.5 3.5 43 32-81 225-267 (421)
175 KOG0643|consensus 62.8 67 0.0015 24.6 7.6 72 6-88 91-172 (327)
176 PRK01742 tolB translocation pr 62.7 46 0.00099 25.4 6.9 46 33-85 269-314 (429)
177 KOG0274|consensus 62.2 42 0.00091 27.2 6.9 68 5-88 328-395 (537)
178 KOG2048|consensus 61.7 64 0.0014 27.2 7.8 76 7-88 153-228 (691)
179 KOG2321|consensus 61.6 15 0.00032 30.6 4.2 44 37-87 156-199 (703)
180 KOG1310|consensus 60.4 55 0.0012 27.4 7.2 72 5-88 47-120 (758)
181 KOG0294|consensus 59.6 19 0.00041 27.9 4.3 54 24-88 179-232 (362)
182 KOG0278|consensus 58.6 43 0.00093 25.5 5.9 54 27-88 237-292 (334)
183 KOG0974|consensus 58.6 32 0.00069 30.1 5.8 67 7-88 217-283 (967)
184 KOG2315|consensus 57.8 51 0.0011 27.1 6.6 61 7-84 269-332 (566)
185 KOG1408|consensus 57.8 17 0.00037 31.2 4.0 73 5-85 498-571 (1080)
186 PF04053 Coatomer_WDAD: Coatom 57.5 47 0.001 26.2 6.3 51 25-86 117-167 (443)
187 KOG1188|consensus 57.4 19 0.0004 28.1 3.9 27 24-50 40-66 (376)
188 PF14779 BBS1: Ciliary BBSome 57.0 23 0.00051 26.2 4.3 32 9-40 64-95 (257)
189 PF00780 CNH: CNH domain; Int 54.8 71 0.0015 22.3 7.7 52 24-84 104-157 (275)
190 KOG0306|consensus 54.0 58 0.0012 28.1 6.5 74 5-88 451-533 (888)
191 KOG0276|consensus 53.1 28 0.0006 29.4 4.5 73 4-88 179-252 (794)
192 PF14761 HPS3_N: Hermansky-Pud 53.1 34 0.00074 24.7 4.5 44 8-52 10-55 (215)
193 KOG0301|consensus 52.2 1.3E+02 0.0028 25.6 8.2 52 27-88 192-244 (745)
194 PF10214 Rrn6: RNA polymerase 50.8 90 0.0019 26.2 7.2 62 5-70 142-214 (765)
195 KOG1920|consensus 49.7 90 0.0019 28.2 7.1 60 5-70 51-120 (1265)
196 KOG0300|consensus 49.6 31 0.00068 27.1 4.1 28 57-86 442-469 (481)
197 KOG1240|consensus 49.3 88 0.0019 28.5 7.0 60 23-88 1059-1123(1431)
198 KOG0646|consensus 47.8 1.5E+02 0.0032 24.0 7.6 76 4-88 119-201 (476)
199 KOG1539|consensus 47.6 11 0.00024 32.4 1.4 56 24-88 545-601 (910)
200 PRK04922 tolB translocation pr 45.6 1.2E+02 0.0026 23.1 6.8 64 8-85 203-270 (433)
201 KOG2066|consensus 45.5 76 0.0016 27.4 5.9 63 4-69 108-170 (846)
202 PRK03629 tolB translocation pr 45.5 1.4E+02 0.003 22.9 7.7 65 7-85 197-265 (429)
203 KOG4328|consensus 45.0 94 0.002 25.2 6.1 32 6-41 367-398 (498)
204 PF00086 Thyroglobulin_1: Thyr 45.0 41 0.00088 19.3 3.3 36 33-76 20-55 (68)
205 KOG0639|consensus 44.6 51 0.0011 27.3 4.7 67 9-88 510-576 (705)
206 PF10313 DUF2415: Uncharacteri 44.6 52 0.0011 17.8 4.7 32 10-43 2-34 (43)
207 COG2319 FOG: WD40 repeat [Gene 42.7 1E+02 0.0023 20.8 8.3 70 5-88 195-266 (466)
208 TIGR02800 propeller_TolB tol-p 42.6 1.2E+02 0.0027 22.3 6.3 42 34-84 214-255 (417)
209 KOG0321|consensus 42.2 48 0.001 27.9 4.3 70 12-88 53-125 (720)
210 KOG4497|consensus 41.8 31 0.00068 27.1 3.0 27 58-88 209-235 (447)
211 COG5167 VID27 Protein involved 41.1 78 0.0017 26.5 5.3 68 13-88 513-586 (776)
212 KOG0306|consensus 40.4 45 0.00097 28.7 3.9 58 24-88 33-90 (888)
213 KOG4578|consensus 40.1 30 0.00066 27.1 2.7 33 35-76 96-128 (421)
214 PF08954 DUF1900: Domain of un 40.1 86 0.0019 20.8 4.6 39 17-56 15-56 (136)
215 KOG0179|consensus 39.5 30 0.00065 25.3 2.5 24 15-39 21-44 (235)
216 cd03757 proteasome_beta_type_1 39.5 33 0.00071 23.9 2.7 24 16-40 1-24 (212)
217 PF12904 Collagen_bind_2: Puta 38.0 36 0.00079 21.3 2.4 25 23-48 14-38 (93)
218 PF12234 Rav1p_C: RAVE protein 38.0 1.6E+02 0.0034 24.7 6.6 55 24-83 39-95 (631)
219 KOG1912|consensus 37.7 1.1E+02 0.0025 26.7 5.9 62 21-87 22-91 (1062)
220 PF08553 VID27: VID27 cytoplas 37.6 1.5E+02 0.0032 25.5 6.6 57 23-88 541-601 (794)
221 KOG2395|consensus 37.3 1.2E+02 0.0027 25.3 5.8 70 11-88 378-454 (644)
222 cd00191 TY Thyroglobulin type 36.6 38 0.00082 19.7 2.2 36 33-76 18-53 (66)
223 cd01272 FE65_N Fe65 Phosphotyr 36.2 73 0.0016 21.6 3.8 39 5-44 74-118 (138)
224 KOG2139|consensus 36.0 74 0.0016 25.3 4.3 63 11-86 101-164 (445)
225 PF06977 SdiA-regulated: SdiA- 35.8 1.7E+02 0.0037 21.2 8.4 52 9-68 22-73 (248)
226 TIGR03803 Gloeo_Verruco Gloeo_ 34.1 55 0.0012 16.8 2.3 19 35-53 16-34 (34)
227 KOG0288|consensus 33.6 87 0.0019 25.1 4.3 27 62-88 385-412 (459)
228 PF14727 PHTB1_N: PTHB1 N-term 33.6 2.4E+02 0.0052 22.3 10.5 82 5-87 68-157 (418)
229 KOG1334|consensus 33.3 1.4E+02 0.0031 24.5 5.6 72 6-85 230-304 (559)
230 cd08695 C2_Dock-B C2 domains f 32.8 95 0.002 21.9 4.1 41 2-44 94-134 (189)
231 KOG1240|consensus 32.7 2.6E+02 0.0056 25.7 7.3 77 6-88 1236-1329(1431)
232 KOG1334|consensus 31.4 82 0.0018 25.9 3.9 41 5-48 182-223 (559)
233 KOG1912|consensus 31.2 3.7E+02 0.0081 23.8 7.9 75 5-87 106-180 (1062)
234 PF10168 Nup88: Nuclear pore c 31.0 3.2E+02 0.0068 23.2 7.4 64 24-88 95-174 (717)
235 COG4300 CadD Predicted permeas 30.3 39 0.00085 24.2 1.8 14 27-40 116-129 (205)
236 smart00211 TY Thyroglobulin ty 30.3 54 0.0012 17.8 2.0 29 40-76 3-31 (46)
237 KOG2096|consensus 30.1 92 0.002 24.5 3.9 35 4-43 82-117 (420)
238 KOG2066|consensus 30.1 1.7E+02 0.0038 25.3 5.8 71 10-87 62-141 (846)
239 PRK02889 tolB translocation pr 29.1 2.6E+02 0.0056 21.3 6.3 65 7-85 194-262 (427)
240 KOG0646|consensus 28.7 3.2E+02 0.0069 22.2 8.7 71 4-87 170-241 (476)
241 KOG0642|consensus 28.6 1.9E+02 0.0041 24.0 5.6 62 23-88 304-369 (577)
242 KOG2096|consensus 28.6 1.1E+02 0.0024 24.1 4.1 24 58-85 372-395 (420)
243 PF09061 Stirrup: Stirrup; In 28.5 34 0.00073 20.6 1.1 24 12-39 19-42 (79)
244 PF02333 Phytase: Phytase; In 28.5 2.9E+02 0.0063 21.6 7.2 53 33-87 126-183 (381)
245 KOG2041|consensus 28.5 52 0.0011 28.6 2.5 27 58-88 13-39 (1189)
246 PF04393 DUF535: Protein of un 28.1 1.2E+02 0.0025 22.6 4.1 27 59-85 136-162 (288)
247 COG5170 CDC55 Serine/threonine 27.8 1E+02 0.0022 24.2 3.8 55 25-81 37-106 (460)
248 PF10282 Lactonase: Lactonase, 27.7 2.5E+02 0.0055 20.7 9.3 68 11-87 247-316 (345)
249 KOG4227|consensus 27.2 2.1E+02 0.0046 23.2 5.5 72 6-87 54-129 (609)
250 KOG2314|consensus 26.9 1.6E+02 0.0034 24.8 4.9 43 24-70 456-503 (698)
251 PF06219 DUF1005: Protein of u 26.2 46 0.001 26.7 1.7 20 2-21 188-207 (460)
252 PF03921 ICAM_N: Intercellular 26.0 54 0.0012 20.5 1.7 17 27-43 68-90 (91)
253 KOG1963|consensus 25.9 3.9E+02 0.0085 23.2 7.1 52 27-87 471-532 (792)
254 COG3650 Predicted membrane pro 25.3 2E+02 0.0043 19.7 4.4 56 8-64 54-121 (149)
255 KOG3914|consensus 25.1 58 0.0013 25.7 2.1 24 61-88 153-176 (390)
256 KOG0295|consensus 24.8 3.6E+02 0.0077 21.4 6.6 68 6-87 332-400 (406)
257 PF11005 DUF2844: Protein of u 24.2 2.3E+02 0.0049 18.9 4.6 33 34-69 30-62 (132)
258 KOG0289|consensus 24.1 3.5E+02 0.0075 22.1 6.2 40 7-54 388-428 (506)
259 KOG1408|consensus 23.9 5.1E+02 0.011 22.9 8.0 34 6-44 594-628 (1080)
260 KOG0281|consensus 23.6 85 0.0018 25.0 2.7 33 5-44 317-350 (499)
261 cd01211 GAPCenA GAPCenA Phosph 23.5 2E+02 0.0043 19.2 4.2 36 9-44 67-110 (125)
262 KOG4378|consensus 23.5 3.7E+02 0.0081 22.5 6.4 54 9-71 251-305 (673)
263 PRK08857 para-aminobenzoate sy 23.3 56 0.0012 22.3 1.6 12 8-19 164-175 (193)
264 KOG1274|consensus 23.3 1.9E+02 0.0042 25.4 4.9 48 37-87 27-78 (933)
265 KOG0280|consensus 23.2 3.6E+02 0.0078 20.9 7.4 53 31-87 43-97 (339)
266 KOG2139|consensus 23.1 4E+02 0.0086 21.3 7.0 65 1-70 133-206 (445)
267 PF11312 DUF3115: Protein of u 23.0 55 0.0012 25.0 1.6 17 52-69 36-52 (315)
268 PRK04792 tolB translocation pr 23.0 3.2E+02 0.007 21.1 5.9 20 63-85 265-284 (448)
269 cd00836 FERM_C FERM_C domain. 21.9 1E+02 0.0022 18.4 2.4 32 12-43 2-33 (92)
270 KOG0278|consensus 21.8 2E+02 0.0042 22.0 4.3 51 6-61 265-316 (334)
271 KOG1262|consensus 21.0 1E+02 0.0022 24.9 2.7 35 36-71 180-214 (543)
272 PF08149 BING4CT: BING4CT (NUC 20.9 65 0.0014 19.9 1.3 16 6-21 7-22 (80)
273 KOG0643|consensus 20.5 4E+02 0.0087 20.5 7.7 70 4-87 6-76 (327)
274 TIGR00566 trpG_papA glutamine 20.3 73 0.0016 21.7 1.7 12 8-19 160-171 (188)
No 1
>KOG1034|consensus
Probab=99.97 E-value=3.6e-30 Score=192.41 Aligned_cols=87 Identities=57% Similarity=1.075 Sum_probs=85.0
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+++|+|+.+||||+||+|...++.++|||+|++|++||+|+-++.+.+||+|.|+|++|+||||||++|..+++|+||+|
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.+|+||
T Consensus 112 G~~GvIr 118 (385)
T KOG1034|consen 112 GYLGVIR 118 (385)
T ss_pred cceeEEE
Confidence 9999997
No 2
>KOG0277|consensus
Probab=99.22 E-value=4.2e-11 Score=88.16 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=66.2
Q ss_pred cCCCCeEEEEEecCCCC----CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKD----DQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~----~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
-.+++-|+|+|+||.+. .+.|.|+.+|++++.|.+....+.+..+++| |.++.+|.++||+. .++. ++++
T Consensus 6 tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~---d~~D~LfdV~Wse~--~e~~-~~~a 79 (311)
T KOG0277|consen 6 TPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY---DTEDGLFDVAWSEN--HENQ-VIAA 79 (311)
T ss_pred cCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee---ecccceeEeeecCC--Ccce-EEEE
Confidence 45678999999999875 6789999999999999999866679999999 89999999999987 3455 7777
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
..||.+|
T Consensus 80 ~GDGSLr 86 (311)
T KOG0277|consen 80 SGDGSLR 86 (311)
T ss_pred ecCceEE
Confidence 8888875
No 3
>KOG0264|consensus
Probab=98.28 E-value=4.1e-06 Score=64.95 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=59.6
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.-+.|..++++|+||||. ..++||.+.+ +|.++++-.-. +.|.++ +.++++++.|.||.. ..++||++
T Consensus 267 ~~~ah~~~vn~~~fnp~~----~~ilAT~S~D~tV~LwDlRnL~--~~lh~~--e~H~dev~~V~WSPh---~etvLASS 335 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN----EFILATGSADKTVALWDLRNLN--KPLHTF--EGHEDEVFQVEWSPH---NETVLASS 335 (422)
T ss_pred cccccCCceeEEEeCCCC----CceEEeccCCCcEEEeechhcc--cCceec--cCCCcceEEEEeCCC---CCceeEec
Confidence 346789999999999998 6799999955 79999886531 344444 578999999999987 35789999
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
|.+|.+
T Consensus 336 g~D~rl 341 (422)
T KOG0264|consen 336 GTDRRL 341 (422)
T ss_pred ccCCcE
Confidence 999876
No 4
>KOG0645|consensus
Probab=98.08 E-value=4.1e-05 Score=57.13 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=60.1
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..+.|+..++.++|+|-. ..+||+||+++ |.|+.... ++--..+...|+.+...+-+|||++. |+ +||+|
T Consensus 9 ~~~gh~~r~W~~awhp~~----g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~---g~-~La~a 79 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGK----GVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPH---GR-YLASA 79 (312)
T ss_pred eecCCCCcEEEEEeccCC----ceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCC---Cc-EEEEe
Confidence 357888899999999954 44999999996 99999885 22234455566678999999999987 34 89999
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
++|+.+
T Consensus 80 SFD~t~ 85 (312)
T KOG0645|consen 80 SFDATV 85 (312)
T ss_pred eccceE
Confidence 999864
No 5
>KOG2445|consensus
Probab=98.04 E-value=3.2e-05 Score=58.56 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=62.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC------eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN------RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~------~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.++++.++|.+||-.. ++|.||+-..+ ++.||+-..++. +.++.-.-+|+.+-+++++|++.-....++||
T Consensus 167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENGR-KWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCcc-eeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 5788999999997553 68999998888 899999999864 34443344589999999999988444467899
Q ss_pred EecCCc
Q psy8253 80 VAGSRA 85 (88)
Q Consensus 80 ~aG~~G 85 (88)
+|..+|
T Consensus 244 vA~kDg 249 (361)
T KOG2445|consen 244 VATKDG 249 (361)
T ss_pred EeecCc
Confidence 999998
No 6
>KOG0273|consensus
Probab=97.98 E-value=4.8e-05 Score=59.99 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=63.1
Q ss_pred cccCCCCeEEEEEecC------------------------------------CCCCCCCEEEEeCCC-eEEEEEcCCCCC
Q psy8253 4 KEDHGQPLFGAQFNHL------------------------------------LKDDQPRIFATVGSN-RVSIYECPDGGS 46 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~------------------------------------~~~~~~~~fAtvG~~-~v~Vy~~~~~~~ 46 (88)
.-.|+.|||++++|-- ++|..++-||+++.+ .++||++..++|
T Consensus 272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence 3579999999999975 234567889999998 699999998866
Q ss_pred eeEE-------------------EEEEcC------------------CCCCceeEEEEeec-CCCCc----eEEEEecCC
Q psy8253 47 IKLL-------------------QCYADP------------------DIEENFYTCAWSMD-LESGR----PLLAVAGSR 84 (88)
Q Consensus 47 ~~~l-------------------~~~~d~------------------d~~e~~y~~aWs~d-~~~~~----plLa~aG~~ 84 (88)
++.+ -+..|+ .+..++||+.|+.+ +.+.+ -.|++++++
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 4333 233332 35889999999987 33333 249999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
+.||
T Consensus 432 stV~ 435 (524)
T KOG0273|consen 432 STVK 435 (524)
T ss_pred CeEE
Confidence 9875
No 7
>PTZ00421 coronin; Provisional
Probab=97.88 E-value=0.00012 Score=57.68 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=56.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
..|..++.+++|+|+. .+++|+++.+ .|.|++++.++. -+.+..+. .+...+.+++|+.+ +..+|+
T Consensus 72 ~GH~~~V~~v~fsP~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~---~~~iLa 142 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPS---AMNVLA 142 (493)
T ss_pred eCCCCCEEEEEEcCCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcC---CCCEEE
Confidence 4688999999999975 3578888877 599999987531 12333332 46788999999976 245799
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+||.||.||
T Consensus 143 Sgs~DgtVr 151 (493)
T PTZ00421 143 SAGADMVVN 151 (493)
T ss_pred EEeCCCEEE
Confidence 999999885
No 8
>KOG0296|consensus
Probab=97.87 E-value=9.5e-05 Score=56.82 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=58.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..+|+.++|+|+-+| +.++.||=|++ +.++++..... +.+.-..+.+++-+|.||.| -.+||+|+
T Consensus 60 F~~H~~svFavsl~P-----~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~Fshd----gtlLATGd 125 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHP-----NNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHD----GTLLATGD 125 (399)
T ss_pred hhhcCCceEEEEeCC-----CCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccC----ceEEEecC
Confidence 468999999999999 25667887776 69999999873 44555578999999999988 46899999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 126 msG~v~ 131 (399)
T KOG0296|consen 126 MSGKVL 131 (399)
T ss_pred CCccEE
Confidence 999885
No 9
>KOG0318|consensus
Probab=97.85 E-value=7.2e-05 Score=59.73 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=53.1
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..+|..=+++|+|+|- ...||++|.++ +.||+=... +.+..+.| +-+.-++|+++|++| +.. ++++
T Consensus 186 ~r~HskFV~~VRysPD-----G~~Fat~gsDgki~iyDGktg---e~vg~l~~~~aHkGsIfalsWsPD---s~~-~~T~ 253 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPD-----GSRFATAGSDGKIYIYDGKTG---EKVGELEDSDAHKGSIFALSWSPD---STQ-FLTV 253 (603)
T ss_pred ccccccceeeEEECCC-----CCeEEEecCCccEEEEcCCCc---cEEEEecCCCCccccEEEEEECCC---Cce-EEEe
Confidence 4677778999999995 35699999995 999987776 44555543 357899999999998 234 5555
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
+.+-.+
T Consensus 254 SaDkt~ 259 (603)
T KOG0318|consen 254 SADKTI 259 (603)
T ss_pred cCCceE
Confidence 555444
No 10
>PTZ00421 coronin; Provisional
Probab=97.79 E-value=0.00026 Score=55.80 Aligned_cols=71 Identities=15% Similarity=0.343 Sum_probs=55.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|-. .+++|+.|.+ .|.|+++... +.++.+. .+...+++++|+.+ ..+|++|+.
T Consensus 122 ~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg---~~~~~l~--~h~~~V~sla~spd----G~lLatgs~ 188 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERG---KAVEVIK--CHSDQITSLEWNLD----GSLLCTTSK 188 (493)
T ss_pred cCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCC---eEEEEEc--CCCCceEEEEEECC----CCEEEEecC
Confidence 5688899999999843 4688888876 5999999876 3444442 35678999999987 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 189 Dg~Ir 193 (493)
T PTZ00421 189 DKKLN 193 (493)
T ss_pred CCEEE
Confidence 99985
No 11
>KOG0272|consensus
Probab=97.70 E-value=8.5e-05 Score=57.91 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=58.5
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.++|-|..++|+++|+|- ..+.||.|-+. -.|+++-+...+++|+. +-.++|+|+|++. |.. ||+
T Consensus 297 L~QEGHs~~v~~iaf~~D-----GSL~~tGGlD~~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPN---Gy~-lAT 362 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPD-----GSLAATGGLDSLGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPN---GYH-LAT 362 (459)
T ss_pred HhhcccccccceeEecCC-----CceeeccCccchhheeecccCcEEEEecc-----cccceeeEeECCC---ceE-Eee
Confidence 367999999999999984 34567766664 78999988877777765 4667999999976 566 999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
||.|+++|
T Consensus 363 gs~Dnt~k 370 (459)
T KOG0272|consen 363 GSSDNTCK 370 (459)
T ss_pred cCCCCcEE
Confidence 99999875
No 12
>PTZ00420 coronin; Provisional
Probab=97.70 E-value=0.00043 Score=55.69 Aligned_cols=75 Identities=13% Similarity=0.304 Sum_probs=56.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-e----eEEEEEEcCCCCCceeEEEEeecCCCCceEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-I----KLLQCYADPDIEENFYTCAWSMDLESGRPLL 78 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~----~~l~~~~d~d~~e~~y~~aWs~d~~~~~plL 78 (88)
..|..+|.+++|+|+. ..++|++|.+ .|.|++++..+. . +.+..+ ..+...+.+++|+.+ +.-+|
T Consensus 71 ~gH~~~V~~lafsP~~----~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~---g~~iL 141 (568)
T PTZ00420 71 KGHTSSILDLQFNPCF----SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPM---NYYIM 141 (568)
T ss_pred cCCCCCEEEEEEcCCC----CCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCC---CCeEE
Confidence 5689999999999975 4578998877 699999986532 1 122222 246778999999976 45568
Q ss_pred EEecCCcEeC
Q psy8253 79 AVAGSRAVIR 88 (88)
Q Consensus 79 a~aG~~G~Ir 88 (88)
|+||.+|.||
T Consensus 142 aSgS~DgtIr 151 (568)
T PTZ00420 142 CSSGFDSFVN 151 (568)
T ss_pred EEEeCCCeEE
Confidence 8999999885
No 13
>KOG2445|consensus
Probab=97.65 E-value=0.00055 Score=51.98 Aligned_cols=76 Identities=17% Similarity=0.388 Sum_probs=60.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC-----------CC------CeeEEEEEEcCCCCCceeEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD-----------GG------SIKLLQCYADPDIEENFYTCAWS 68 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~-----------~~------~~~~l~~~~d~d~~e~~y~~aWs 68 (88)
+|+.||++++|.|.... ...++|+..++.|.||.+.. .. +++++..+ +|++-+++.|.|.
T Consensus 221 d~~dpI~di~wAPn~Gr-~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~--~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGR-SYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL--DDHNGEVWRVRWN 297 (361)
T ss_pred CCCCcceeeeeccccCC-ceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeec--cCCCCceEEEEEe
Confidence 78999999999998864 68889999888899999873 11 24444455 3688899999998
Q ss_pred ecCCCCceEEEEecCCcEeC
Q psy8253 69 MDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 69 ~d~~~~~plLa~aG~~G~Ir 88 (88)
.. |. +|++.|.||.+|
T Consensus 298 mt---Gt-iLsStGdDG~VR 313 (361)
T KOG2445|consen 298 MT---GT-ILSSTGDDGCVR 313 (361)
T ss_pred ee---ee-EEeecCCCceee
Confidence 66 33 599999999987
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.62 E-value=0.00062 Score=45.18 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=52.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..++.+++|+|. ..++++.+ .+++.+|+..... .++.+. .+...+.+++|+.+ ..+|++++.+
T Consensus 217 ~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~i~~~~~~~---~~~~~~--~~~~~i~~~~~~~~----~~~l~~~~~d 282 (289)
T cd00200 217 GHENGVNSVAFSPD-----GYLLASGSEDGTIRVWDLRTGE---CVQTLS--GHTNSVTSLAWSPD----GKRLASGSAD 282 (289)
T ss_pred hcCCceEEEEEcCC-----CcEEEEEcCCCcEEEEEcCCce---eEEEcc--ccCCcEEEEEECCC----CCEEEEecCC
Confidence 56678999999874 56777777 7789999998763 344443 35668999999976 3569999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 283 ~~i~ 286 (289)
T cd00200 283 GTIR 286 (289)
T ss_pred CeEE
Confidence 9874
No 15
>KOG0277|consensus
Probab=97.48 E-value=0.0008 Score=50.12 Aligned_cols=72 Identities=19% Similarity=0.515 Sum_probs=55.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..-||.++|+|.. +.+||.++++ ...++++..-|.-+.|- -++-+.-||-|++- + .-+|++||.
T Consensus 144 ~gh~~~Iy~a~~sp~~----~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky--~-~~vl~Tg~v 211 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPHI----PNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKY--N-HNVLATGGV 211 (311)
T ss_pred cCCccEEEEEecCCCC----CCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeeccccc--C-CcEEEecCC
Confidence 4588899999999966 6799999998 58888877654322222 24567899999976 2 456999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|+.||
T Consensus 212 d~~vr 216 (311)
T KOG0277|consen 212 DNLVR 216 (311)
T ss_pred CceEE
Confidence 99986
No 16
>KOG1007|consensus
Probab=97.44 E-value=0.00073 Score=51.17 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=51.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC----------------------CeeEE-----EEEEcC
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG----------------------SIKLL-----QCYADP 56 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~----------------------~~~~l-----~~~~d~ 56 (88)
.++|..=+|+|+|||+. +|+.-+.|.+...+..|-..- ..++| +.| +
T Consensus 254 l~~HsHWvW~VRfn~~h----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--d 327 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEH----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--D 327 (370)
T ss_pred cCCCceEEEEEEecCcc----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--c
Confidence 46788889999999976 678888888876666654310 12233 345 3
Q ss_pred CCCCceeEEEEeecCCCCceEEE-EecCCcEe
Q psy8253 57 DIEENFYTCAWSMDLESGRPLLA-VAGSRAVI 87 (88)
Q Consensus 57 d~~e~~y~~aWs~d~~~~~plLa-~aG~~G~I 87 (88)
++++++|+|+||-. +|.|- .=+.||++
T Consensus 328 ehEDSVY~~aWSsa----dPWiFASLSYDGRv 355 (370)
T KOG1007|consen 328 EHEDSVYALAWSSA----DPWIFASLSYDGRV 355 (370)
T ss_pred ccccceEEEeeccC----CCeeEEEeccCceE
Confidence 58999999999944 67644 44777765
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.30 E-value=0.0038 Score=41.34 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=51.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- .+.+++.+ .+.+.||++.... .++... .+......+.|+.+. .+|++++.
T Consensus 6 ~~h~~~i~~~~~~~~-----~~~l~~~~~~g~i~i~~~~~~~---~~~~~~--~~~~~i~~~~~~~~~----~~l~~~~~ 71 (289)
T cd00200 6 KGHTGGVTCVAFSPD-----GKLLATGSGDGTIKVWDLETGE---LLRTLK--GHTGPVRDVAASADG----TYLASGSS 71 (289)
T ss_pred cccCCCEEEEEEcCC-----CCEEEEeecCcEEEEEEeeCCC---cEEEEe--cCCcceeEEEECCCC----CEEEEEcC
Confidence 479999999999984 45677777 6689999998764 333332 345566789999772 56899998
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 72 ~~~i~ 76 (289)
T cd00200 72 DKTIR 76 (289)
T ss_pred CCeEE
Confidence 88874
No 18
>KOG0271|consensus
Probab=97.30 E-value=0.00076 Score=52.57 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..-|+.++-+++|+| . ...+|+=+|+ -|.+++|.+..|+..++ .+..-+-|++||+| |. .||+|+
T Consensus 111 ~~GH~e~Vl~~~fsp-~----g~~l~tGsGD~TvR~WD~~TeTp~~t~K-----gH~~WVlcvawsPD---gk-~iASG~ 176 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSP-T----GSRLVTGSGDTTVRLWDLDTETPLFTCK-----GHKNWVLCVAWSPD---GK-KIASGS 176 (480)
T ss_pred cCCCCCcEEEEEecC-C----CceEEecCCCceEEeeccCCCCcceeec-----CCccEEEEEEECCC---cc-hhhccc
Confidence 367999999999999 2 4457777666 59999999986655554 35667999999998 34 499999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 177 ~dg~I~ 182 (480)
T KOG0271|consen 177 KDGSIR 182 (480)
T ss_pred cCCeEE
Confidence 999985
No 19
>PTZ00420 coronin; Provisional
Probab=97.27 E-value=0.0024 Score=51.48 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=52.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|...+.+++|+|-. ..++|++|.+ .|.|+++.... .+..+. ....+++++|+.+ | .+|++++.
T Consensus 122 ~gH~~~V~sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~---~~~~i~---~~~~V~Slswspd---G-~lLat~s~ 187 (568)
T PTZ00420 122 KGHKKKISIIDWNPMN----YYIMCSSGFDSFVNIWDIENEK---RAFQIN---MPKKLSSLKWNIK---G-NLLSGTCV 187 (568)
T ss_pred ecCCCcEEEEEECCCC----CeEEEEEeCCCeEEEEECCCCc---EEEEEe---cCCcEEEEEECCC---C-CEEEEEec
Confidence 4588899999999842 4577887755 69999998763 334442 3457999999987 3 36888999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 188 D~~Ir 192 (568)
T PTZ00420 188 GKHMH 192 (568)
T ss_pred CCEEE
Confidence 98875
No 20
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.17 E-value=0.0018 Score=33.07 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 48 KLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 48 ~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++++.+. .++..+++++|+.+ ..+|++||.||.||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~~----~~~~~s~~~D~~i~ 36 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSPD----GNFLASGSSDGTIR 36 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEETT----SSEEEEEETTSEEE
T ss_pred eEEEEEc--CCCCcEEEEEEecc----cccceeeCCCCEEE
Confidence 3456664 47899999999988 56799999999986
No 21
>KOG0302|consensus
Probab=97.13 E-value=0.003 Score=49.14 Aligned_cols=57 Identities=18% Similarity=0.415 Sum_probs=43.5
Q ss_pred CCCCEEEEeCCC-eEEEEEcCCCC--CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSN-RVSIYECPDGG--SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~-~v~Vy~~~~~~--~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+..+||+|+-+ .|.|.++-... ++...+ -++-++.-++|+.. .||||+||.+|.++
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-----Ah~sDVNVISWnr~----~~lLasG~DdGt~~ 327 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-----AHNSDVNVISWNRR----EPLLASGGDDGTLS 327 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEee-----ccCCceeeEEccCC----cceeeecCCCceEE
Confidence 578899999988 48888877642 333332 35668999999977 46999999999874
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.09 E-value=0.0062 Score=49.85 Aligned_cols=72 Identities=14% Similarity=0.304 Sum_probs=53.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++++++|+|-. ..++|+.|.+ .|.||++... ..+..+. ....+++++|... ++ .+|++|+
T Consensus 571 ~~~H~~~V~~l~~~p~~----~~~L~Sgs~Dg~v~iWd~~~~---~~~~~~~---~~~~v~~v~~~~~--~g-~~latgs 637 (793)
T PLN00181 571 MKEHEKRVWSIDYSSAD----PTLLASGSDDGSVKLWSINQG---VSIGTIK---TKANICCVQFPSE--SG-RSLAFGS 637 (793)
T ss_pred ecCCCCCEEEEEEcCCC----CCEEEEEcCCCEEEEEECCCC---cEEEEEe---cCCCeEEEEEeCC--CC-CEEEEEe
Confidence 35788999999999743 5679999876 5999999875 3344442 2357889999654 33 4599999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 638 ~dg~I~ 643 (793)
T PLN00181 638 ADHKVY 643 (793)
T ss_pred CCCeEE
Confidence 999885
No 23
>KOG0290|consensus
Probab=97.07 E-value=0.0049 Score=46.78 Aligned_cols=74 Identities=22% Similarity=0.407 Sum_probs=50.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-----------CeeEEE---------------------E
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-----------SIKLLQ---------------------C 52 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-----------~~~~l~---------------------~ 52 (88)
.|..++|+++|.- +..++||+||.+ .|.++++-.-. .-.+|+ .
T Consensus 194 AHDKEV~DIaf~~----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 194 AHDKEVYDIAFLK----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred ecCcceeEEEecc----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 4888999999987 579999999998 47766654310 011222 1
Q ss_pred EEc-----------CCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 53 YAD-----------PDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 53 ~~d-----------~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
+.| ..+...+..+||..- +..+ ||+||.|-.
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPh--S~~h-ictaGDD~q 311 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPH--SSSH-ICTAGDDCQ 311 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCC--CCce-eeecCCcce
Confidence 111 257888889999876 5556 888887743
No 24
>KOG0264|consensus
Probab=96.99 E-value=0.0017 Score=50.68 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=56.7
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+...|...+-+|+|.|+. .++||+||.+ ++.|.+.-.+ .-+. +.-.+ .+..++.||+|..- +..+||+|
T Consensus 222 ~~~~h~~~VeDV~~h~~h----~~lF~sv~dd~~L~iwD~R~~-~~~~-~~~~~-ah~~~vn~~~fnp~---~~~ilAT~ 291 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLH----EDLFGSVGDDGKLMIWDTRSN-TSKP-SHSVK-AHSAEVNCVAFNPF---NEFILATG 291 (422)
T ss_pred EeecCCcceehhhccccc----hhhheeecCCCeEEEEEcCCC-CCCC-ccccc-ccCCceeEEEeCCC---CCceEEec
Confidence 456788899999999876 6789999998 5888888752 1111 11111 35788999999976 36889999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.|+.|+
T Consensus 292 S~D~tV~ 298 (422)
T KOG0264|consen 292 SADKTVA 298 (422)
T ss_pred cCCCcEE
Confidence 9999874
No 25
>KOG0322|consensus
Probab=96.98 E-value=0.00086 Score=50.19 Aligned_cols=56 Identities=27% Similarity=0.370 Sum_probs=48.6
Q ss_pred CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 23 DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 23 ~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.+..+|||.|=+ |+.||.+.+-.|+.+|+-- ...+.++|.+.| .+++|+||+|+.|
T Consensus 261 pD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-----sagvn~vAfspd----~~lmAaaskD~rI 317 (323)
T KOG0322|consen 261 PDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-----SAGVNAVAFSPD----CELMAAASKDARI 317 (323)
T ss_pred cCCcEEeecccCCcEEEEEeccCCchhhhhhh-----hcceeEEEeCCC----CchhhhccCCceE
Confidence 467899999977 8999999999888888644 467999999987 6899999999987
No 26
>KOG1587|consensus
Probab=96.90 E-value=0.0022 Score=51.59 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcC-CCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECP-DGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~-~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.-|..+++.+.||||. ..+|.++|.-.|.|+... ...| |-.|. +....++++|||.- .-.++|++-.
T Consensus 395 ~~h~g~v~~v~~nPF~----~k~fls~gDW~vriWs~~~~~~P---l~~~~--~~~~~v~~vaWSpt---rpavF~~~d~ 462 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFY----PKNFLSVGDWTVRIWSEDVIASP---LLSLD--SSPDYVTDVAWSPT---RPAVFATVDG 462 (555)
T ss_pred cccCcceEeeecCCCc----cceeeeeccceeEeccccCCCCc---chhhh--hccceeeeeEEcCc---CceEEEEEcC
Confidence 3477899999999998 568999999999999998 4433 33332 34555999999976 1235777777
Q ss_pred CcEe
Q psy8253 84 RAVI 87 (88)
Q Consensus 84 ~G~I 87 (88)
+|.|
T Consensus 463 ~G~l 466 (555)
T KOG1587|consen 463 DGNL 466 (555)
T ss_pred CCce
Confidence 8876
No 27
>KOG0316|consensus
Probab=96.89 E-value=0.0068 Score=44.99 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=47.9
Q ss_pred CCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.++.-||.||+++ |++++..++ ++++.|+ .+...+.+++...+ ..+|++|+.|..||
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TG---kv~Rr~r--gH~aqVNtV~fNee----sSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTG---KVDRRFR--GHLAQVNTVRFNEE----SSVVASGSFDSSVR 126 (307)
T ss_pred ccccccccCCCCceEEEEEcccC---eeeeecc--cccceeeEEEecCc----ceEEEeccccceeE
Confidence 3466799999996 889999998 8999887 48889999998866 56799999998875
No 28
>KOG0266|consensus
Probab=96.89 E-value=0.0095 Score=46.16 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=56.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|...+++++|.|-. ..+++.+.+ .+.|++...++ ..++.+. .+...+|+|+++.+ + .+|++|+.
T Consensus 200 ~~h~~~v~~~~fs~d~-----~~l~s~s~D~tiriwd~~~~~--~~~~~l~--gH~~~v~~~~f~p~---g-~~i~Sgs~ 266 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-----SYLLSGSDDKTLRIWDLKDDG--RNLKTLK--GHSTYVTSVAFSPD---G-NLLVSGSD 266 (456)
T ss_pred cccccceeeeEECCCC-----cEEEEecCCceEEEeeccCCC--eEEEEec--CCCCceEEEEecCC---C-CEEEEecC
Confidence 5799999999999944 267777777 59999995543 4555554 47778899999988 3 77999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|+.||
T Consensus 267 D~tvr 271 (456)
T KOG0266|consen 267 DGTVR 271 (456)
T ss_pred CCcEE
Confidence 99986
No 29
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.80 E-value=0.005 Score=31.31 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=27.2
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYE 40 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~ 40 (88)
..+.|..++++++|+|- .+.||++|.+ .|.||+
T Consensus 6 ~~~~h~~~i~~i~~~~~-----~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPD-----GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETT-----SSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecc-----cccceeeCCCCEEEEEC
Confidence 45789999999999996 6778888886 587774
No 30
>KOG0319|consensus
Probab=96.78 E-value=0.0087 Score=49.52 Aligned_cols=71 Identities=17% Similarity=0.336 Sum_probs=56.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|+.-+|+|.|+|++ |+.||++++. |.|+.+.+- .-|+.+. .+.-.+.-++.-.. +.. |++||
T Consensus 501 LsGH~RGvw~V~Fs~~d-----q~laT~SgD~TvKIW~is~f---SClkT~e--GH~~aVlra~F~~~---~~q-liS~~ 566 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKND-----QLLATCSGDKTVKIWSISTF---SCLKTFE--GHTSAVLRASFIRN---GKQ-LISAG 566 (775)
T ss_pred eeCCccceEEEEecccc-----ceeEeccCCceEEEEEeccc---eeeeeec--CccceeEeeeeeeC---CcE-EEecc
Confidence 45799999999999954 7899999995 999999885 6777773 36777777776644 556 99999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 567 adGliK 572 (775)
T KOG0319|consen 567 ADGLIK 572 (775)
T ss_pred CCCcEE
Confidence 999986
No 31
>KOG0310|consensus
Probab=96.77 E-value=0.0095 Score=47.22 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=58.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
...|..|+--++|.|.. ..+|++++.+++.-|.-... ..+|.+.+ ++++-+=|.+|+.. ..+++++||.
T Consensus 106 ~~ah~apv~~~~f~~~d----~t~l~s~sDd~v~k~~d~s~---a~v~~~l~-~htDYVR~g~~~~~---~~hivvtGsY 174 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQD----NTMLVSGSDDKVVKYWDLST---AYVQAELS-GHTDYVRCGDISPA---NDHIVVTGSY 174 (487)
T ss_pred HhhccCceeEEEecccC----CeEEEecCCCceEEEEEcCC---cEEEEEec-CCcceeEeeccccC---CCeEEEecCC
Confidence 45788999999999865 78999999999777766554 22455554 68889999999977 2578999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 175 Dg~vr 179 (487)
T KOG0310|consen 175 DGKVR 179 (487)
T ss_pred CceEE
Confidence 99997
No 32
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.76 E-value=0.011 Score=40.95 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=41.8
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC---eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN---RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~---~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+...+|.+++|+|- ..-||++-|. +|.+|+.. .+.+..+. .....+++|+++ |+ +||+||
T Consensus 57 ~~~~~I~~~~WsP~-----g~~favi~g~~~~~v~lyd~~----~~~i~~~~----~~~~n~i~wsP~---G~-~l~~~g 119 (194)
T PF08662_consen 57 KKEGPIHDVAWSPN-----GNEFAVIYGSMPAKVTLYDVK----GKKIFSFG----TQPRNTISWSPD---GR-FLVLAG 119 (194)
T ss_pred cCCCceEEEEECcC-----CCEEEEEEccCCcccEEEcCc----ccEeEeec----CCCceEEEECCC---CC-EEEEEE
Confidence 34457999999993 4558877433 69999995 35666662 345668999987 44 466665
Q ss_pred C
Q psy8253 83 S 83 (88)
Q Consensus 83 ~ 83 (88)
.
T Consensus 120 ~ 120 (194)
T PF08662_consen 120 F 120 (194)
T ss_pred c
Confidence 4
No 33
>KOG0310|consensus
Probab=96.70 E-value=0.0026 Score=50.30 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=55.9
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+|-++.|+|-.| .-||+.++-||+||.....+..+.+..|.| ..|++....| -.|||+|+..|+||
T Consensus 27 ~~vssl~fsp~~P----~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~D----G~LlaaGD~sG~V~ 93 (487)
T KOG0310|consen 27 NSVSSLCFSPKHP----YDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSD----GRLLAAGDESGHVK 93 (487)
T ss_pred CcceeEecCCCCC----CceEEecccEEEEEecchhhhhhhHHhhcc-----ceeEEEeecC----CeEEEccCCcCcEE
Confidence 4889999999654 349999999999999988777777778854 5899999887 46799999999985
No 34
>KOG2110|consensus
Probab=96.65 E-value=0.02 Score=44.35 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+-|+.++=+++|||- ..+.||.+.+. |.|+..+.+ +.++.|+-.-..-.+|+++++.| .++|++.|
T Consensus 170 ~aH~~~lAalafs~~-----G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~d----s~~L~~sS 237 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPD-----GTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPD----SQFLAASS 237 (391)
T ss_pred EecCCceeEEEECCC-----CCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCC----CCeEEEec
Confidence 589999999999983 46799998875 888888776 56666655456788999999988 46899999
Q ss_pred CCcEe
Q psy8253 83 SRAVI 87 (88)
Q Consensus 83 ~~G~I 87 (88)
..+.|
T Consensus 238 ~TeTV 242 (391)
T KOG2110|consen 238 NTETV 242 (391)
T ss_pred CCCeE
Confidence 98876
No 35
>KOG1538|consensus
Probab=96.62 E-value=0.006 Score=50.73 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
..++.++|-|-. ++ +....++|+.||+...++-+..|+. +.+.+||||||.|. . +.|+||.|-
T Consensus 13 hci~d~afkPDG----sq-L~lAAg~rlliyD~ndG~llqtLKg-----HKDtVycVAys~dG---k-rFASG~aDK 75 (1081)
T KOG1538|consen 13 HCINDIAFKPDG----TQ-LILAAGSRLLVYDTSDGTLLQPLKG-----HKDTVYCVAYAKDG---K-RFASGSADK 75 (1081)
T ss_pred cchheeEECCCC----ce-EEEecCCEEEEEeCCCccccccccc-----ccceEEEEEEccCC---c-eeccCCCce
Confidence 378999998843 33 4455679999999998855555554 56679999999982 2 356665543
No 36
>KOG0263|consensus
Probab=96.56 E-value=0.0085 Score=49.44 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=58.0
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
++..-|+.||-+++|+| ....+|+-+.+ .|.||++... +++..+. ++...+|+++.|.| .-+||+
T Consensus 571 RiF~GH~~~V~al~~Sp-----~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~--~Ht~ti~SlsFS~d----g~vLas 636 (707)
T KOG0263|consen 571 RIFTGHKGPVTALAFSP-----CGRYLASGDEDGLIKIWDLANG---SLVKQLK--GHTGTIYSLSFSRD----GNVLAS 636 (707)
T ss_pred EEecCCCCceEEEEEcC-----CCceEeecccCCcEEEEEcCCC---cchhhhh--cccCceeEEEEecC----CCEEEe
Confidence 46678999999999999 35668888877 5999999887 4444444 35888999999998 345999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
||.+..||
T Consensus 637 gg~DnsV~ 644 (707)
T KOG0263|consen 637 GGADNSVR 644 (707)
T ss_pred cCCCCeEE
Confidence 99998775
No 37
>KOG0266|consensus
Probab=96.52 E-value=0.026 Score=43.72 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=53.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|...+++|+|+|- .+++++++.++ |.|+.+... +.++... .+.+.+-+|+-+.+ ++ +|++|+
T Consensus 242 l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~---~~~~~l~--~hs~~is~~~f~~d---~~-~l~s~s 307 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTG---ECVRKLK--GHSDGISGLAFSPD---GN-LLVSAS 307 (456)
T ss_pred ecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCC---eEEEeee--ccCCceEEEEECCC---CC-EEEEcC
Confidence 3589999999999983 26788888885 999999985 5555554 35556777777666 34 488888
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||.||
T Consensus 308 ~d~~i~ 313 (456)
T KOG0266|consen 308 YDGTIR 313 (456)
T ss_pred CCccEE
Confidence 899885
No 38
>KOG0303|consensus
Probab=96.51 E-value=0.017 Score=45.32 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=55.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-------CeeEEE---------EE--------------
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-------SIKLLQ---------CY-------------- 53 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-------~~~~l~---------~~-------------- 53 (88)
-.|..|+-+++||||. +++.|+++.+ .|-|++.+.++ ++..|. .|
T Consensus 78 ~GHt~~vLDi~w~Pfn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 4688999999999997 5678998888 58899988864 222221 00
Q ss_pred --------------EcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 54 --------------ADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 54 --------------~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
..-++.+-+|+++|+.| | .+||+++.|-+||
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~d---G-s~l~TtckDKkvR 198 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRD---G-SLLCTTCKDKKVR 198 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccC---C-ceeeeecccceeE
Confidence 00256888999999988 3 3588888888776
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.49 E-value=0.03 Score=45.91 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
..++.+++|+|+. ...+|+.+.+ .|.|+++... +.++.+. .+...+++++|+.. + ..+|++||.+|.
T Consensus 532 ~~~v~~l~~~~~~----~~~las~~~Dg~v~lWd~~~~---~~~~~~~--~H~~~V~~l~~~p~--~-~~~L~Sgs~Dg~ 599 (793)
T PLN00181 532 RSKLSGICWNSYI----KSQVASSNFEGVVQVWDVARS---QLVTEMK--EHEKRVWSIDYSSA--D-PTLLASGSDDGS 599 (793)
T ss_pred cCceeeEEeccCC----CCEEEEEeCCCeEEEEECCCC---eEEEEec--CCCCCEEEEEEcCC--C-CCEEEEEcCCCE
Confidence 3467788888875 3467777765 6999998875 4555553 46788999999864 2 346999999998
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
||
T Consensus 600 v~ 601 (793)
T PLN00181 600 VK 601 (793)
T ss_pred EE
Confidence 85
No 40
>KOG0318|consensus
Probab=96.49 E-value=0.019 Score=46.27 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=53.9
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+++|..++-.++|+|-. .+||.+--.| |.+|+...+.. ....+.. +...+.|+||+.+ +.+||+|
T Consensus 482 ~~~~h~a~iT~vaySpd~-----~yla~~Da~rkvv~yd~~s~~~--~~~~w~F--HtakI~~~aWsP~----n~~vATG 548 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDG-----AYLAAGDASRKVVLYDVASREV--KTNRWAF--HTAKINCVAWSPN----NKLVATG 548 (603)
T ss_pred eeecccCCceEEEECCCC-----cEEEEeccCCcEEEEEcccCce--ecceeee--eeeeEEEEEeCCC----ceEEEec
Confidence 467899999999999944 4577776665 99999998743 3333321 6778999999988 4579999
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
+.|-.|
T Consensus 549 SlDt~V 554 (603)
T KOG0318|consen 549 SLDTNV 554 (603)
T ss_pred cccceE
Confidence 887554
No 41
>KOG0263|consensus
Probab=96.48 E-value=0.0047 Score=50.89 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=49.5
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..-|..|+|.|+|+|+. -.|||+|.++ +.+|.+... ..++.|.. +-.++-||+.-+. ..++|+||
T Consensus 489 y~GH~~PVwdV~F~P~G-----yYFatas~D~tArLWs~d~~---~PlRifag--hlsDV~cv~FHPN----s~Y~aTGS 554 (707)
T KOG0263|consen 489 YKGHLAPVWDVQFAPRG-----YYFATASHDQTARLWSTDHN---KPLRIFAG--HLSDVDCVSFHPN----SNYVATGS 554 (707)
T ss_pred ecCCCcceeeEEecCCc-----eEEEecCCCceeeeeecccC---Cchhhhcc--cccccceEEECCc----ccccccCC
Confidence 34788999999999984 4699999997 778888775 55555553 4555566665543 35567776
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|-.+|
T Consensus 555 sD~tVR 560 (707)
T KOG0263|consen 555 SDRTVR 560 (707)
T ss_pred CCceEE
Confidence 665554
No 42
>KOG1332|consensus
Probab=96.38 E-value=0.011 Score=43.94 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=57.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG---SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.|+|..=+-+||+.|-..- -....|+|+.+ +|.||....+. ..++|..| +..+|.++||.. |+ +|+
T Consensus 203 l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-----~~~~w~vSWS~s---Gn-~La 272 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-----PDVVWRVSWSLS---GN-ILA 272 (299)
T ss_pred hhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccccccccC-----CcceEEEEEecc---cc-EEE
Confidence 4788888999999998753 35678999998 59999998653 26777776 456999999976 44 499
Q ss_pred EecCCcEe
Q psy8253 80 VAGSRAVI 87 (88)
Q Consensus 80 ~aG~~G~I 87 (88)
++|.+.+|
T Consensus 273 Vs~GdNkv 280 (299)
T KOG1332|consen 273 VSGGDNKV 280 (299)
T ss_pred EecCCcEE
Confidence 99888776
No 43
>KOG0284|consensus
Probab=96.37 E-value=0.0028 Score=49.61 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=56.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..||..|-+++|||.. +.++|.|.++ +.||+... ++-|+.|+ .++.++-+++|.... .-||++||.
T Consensus 261 h~HKntVl~~~f~~n~-----N~Llt~skD~~~kv~DiR~---mkEl~~~r--~Hkkdv~~~~WhP~~---~~lftsgg~ 327 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNG-----NWLLTGSKDQSCKVFDIRT---MKELFTYR--GHKKDVTSLTWHPLN---ESLFTSGGS 327 (464)
T ss_pred hhccceEEEEEEcCCC-----CeeEEccCCceEEEEehhH---hHHHHHhh--cchhhheeecccccc---ccceeeccC
Confidence 5799999999999954 6799999996 77777763 46677775 367889999999872 357999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|.
T Consensus 328 Dgsvv 332 (464)
T KOG0284|consen 328 DGSVV 332 (464)
T ss_pred CCceE
Confidence 99873
No 44
>KOG0772|consensus
Probab=96.24 E-value=0.0087 Score=48.23 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=54.8
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
-|-..+-+..|+|+. .+.|-||+.+ .+.|+++.... .++|++.----...-..-+|+|+.| .++||+|..
T Consensus 266 GHia~lt~g~whP~~----k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd----g~~iAagc~ 337 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDN----KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD----GKLIAAGCL 337 (641)
T ss_pred CceeeeeccccccCc----ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC----cchhhhccc
Confidence 456677778888876 5679999998 59999998753 2444443222234566889999998 467999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|.
T Consensus 338 DGSIQ 342 (641)
T KOG0772|consen 338 DGSIQ 342 (641)
T ss_pred CCcee
Confidence 99984
No 45
>KOG0319|consensus
Probab=96.02 E-value=0.033 Score=46.24 Aligned_cols=71 Identities=14% Similarity=0.307 Sum_probs=58.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..-|...|.+|+.+|. +.++||++-++ +.|.++++ +.++...+ .+...+++|..|+. +++||+++
T Consensus 459 ~~aHdKdIN~Vaia~n-----dkLiAT~SqDktaKiW~le~---~~l~~vLs--GH~RGvw~V~Fs~~----dq~laT~S 524 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPN-----DKLIATGSQDKTAKIWDLEQ---LRLLGVLS--GHTRGVWCVSFSKN----DQLLATCS 524 (775)
T ss_pred HHhhcccccceEecCC-----CceEEecccccceeeecccC---ceEEEEee--CCccceEEEEeccc----cceeEecc
Confidence 3457888999999884 46799999997 89999994 46666664 58899999999976 68899999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|..||
T Consensus 525 gD~TvK 530 (775)
T KOG0319|consen 525 GDKTVK 530 (775)
T ss_pred CCceEE
Confidence 999886
No 46
>KOG2394|consensus
Probab=95.95 E-value=0.0079 Score=48.57 Aligned_cols=64 Identities=16% Similarity=0.363 Sum_probs=47.5
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
+|-.-+|+| +.+.+|+|+.+ .+.|+......=+.++++|- -.+-||+||.| -.+||+||+|-.|
T Consensus 292 ~in~f~FS~-----DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPD----GKyIvtGGEDDLV 356 (636)
T KOG2394|consen 292 SINEFAFSP-----DGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPD----GKYIVTGGEDDLV 356 (636)
T ss_pred cccceeEcC-----CCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCC----ccEEEecCCcceE
Confidence 344444544 46889999988 58899988764456678883 45899999999 3569999998654
No 47
>KOG1009|consensus
Probab=95.94 E-value=0.032 Score=43.62 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=46.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcC------CCC-----CeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECP------DGG-----SIKLLQCYADPDIEENFYTCAWSMDLE 72 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~------~~~-----~~~~l~~~~d~d~~e~~y~~aWs~d~~ 72 (88)
..|.+.+.+|.|+|- ..+.|++|.++ |.+..-. .+. +-.-+....+..+.++.|..+|+.|
T Consensus 62 s~H~~aVN~vRf~p~-----gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-- 134 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPD-----GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-- 134 (434)
T ss_pred cCCcceeEEEEEcCC-----cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--
Confidence 568889999999994 35688888876 5555544 111 1112223333357899999999988
Q ss_pred CCceEEEEecCCcE
Q psy8253 73 SGRPLLAVAGSRAV 86 (88)
Q Consensus 73 ~~~plLa~aG~~G~ 86 (88)
...|++|+.+..
T Consensus 135 --~~~l~s~s~dns 146 (434)
T KOG1009|consen 135 --SNFLVSGSVDNS 146 (434)
T ss_pred --Cceeeeeeccce
Confidence 233566655544
No 48
>KOG0273|consensus
Probab=95.93 E-value=0.068 Score=42.64 Aligned_cols=74 Identities=14% Similarity=0.286 Sum_probs=58.7
Q ss_pred ccCCCCeEEEEEecCCC----CCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLK----DDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~----~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
+.|.+.||..+++|-.+ +....+.|+++.+. |.+|..... ..|..+. ++.|.+|+++.+.+ .-+||
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~--kH~~pVysvafS~~----g~ylA 468 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLM--KHQEPVYSVAFSPN----GRYLA 468 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeec--cCCCceEEEEecCC----CcEEE
Confidence 56888999999999765 34567888888884 999998876 4444554 58999999999977 34599
Q ss_pred EecCCcEe
Q psy8253 80 VAGSRAVI 87 (88)
Q Consensus 80 ~aG~~G~I 87 (88)
.|..+|.|
T Consensus 469 sGs~dg~V 476 (524)
T KOG0273|consen 469 SGSLDGCV 476 (524)
T ss_pred ecCCCCee
Confidence 99999876
No 49
>KOG0641|consensus
Probab=95.86 E-value=0.072 Score=39.64 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=44.4
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCC--C---------CCeeEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPD--G---------GSIKLLQCYADPDIEENFYTCAWSMDLESGR 75 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~--~---------~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~ 75 (88)
+.|-+|+|.|-.. +-.||.|. ..||.-+. + .|-. +..=+.+.+.-++||.|||.+ -
T Consensus 33 qairav~fhp~g~------lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~-v~~kr~khhkgsiyc~~ws~~----g 101 (350)
T KOG0641|consen 33 QAIRAVAFHPAGG------LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS-VLCKRNKHHKGSIYCTAWSPC----G 101 (350)
T ss_pred hheeeEEecCCCc------eEEeccCCceEEEEccccccCcccccccccCCCe-EEeeeccccCccEEEEEecCc----c
Confidence 5788999988543 33456663 44554443 1 1112 222344568899999999988 3
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
.|||+|+.+-.||
T Consensus 102 eliatgsndk~ik 114 (350)
T KOG0641|consen 102 ELIATGSNDKTIK 114 (350)
T ss_pred CeEEecCCCceEE
Confidence 5799999887775
No 50
>KOG1445|consensus
Probab=95.82 E-value=0.028 Score=46.69 Aligned_cols=74 Identities=20% Similarity=0.439 Sum_probs=52.1
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-------CeeEEE----------------------EEE--
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-------SIKLLQ----------------------CYA-- 54 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-------~~~~l~----------------------~~~-- 54 (88)
.+..+-+.+++||++. + +|+.+.+ +|.+++++.+| +-++|. +|.
T Consensus 626 Ngt~vtDl~WdPFD~~---r-LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDE---R-LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cCceeeecccCCCChH---H-eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 4677889999999852 3 5555544 89999998864 122222 110
Q ss_pred --------------cCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 55 --------------DPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 55 --------------d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
--.+.+.++.+|||.| |+. ||+-|+||.||
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpd---Gr~-~AtVcKDg~~r 745 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPD---GRR-IATVCKDGTLR 745 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCC---Ccc-eeeeecCceEE
Confidence 0257889999999998 444 99999999986
No 51
>KOG0272|consensus
Probab=95.82 E-value=0.027 Score=44.27 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=48.5
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|-.+||+|+|+|.- ...||.|++. +.|+++.....+-+| +.+...+-.|..+++ .| -.|++||
T Consensus 341 L~gH~k~I~~V~fsPNG-----y~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~--~g-~fL~Tas 407 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNG-----YHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQ--EG-YFLVTAS 407 (459)
T ss_pred ecccccceeeEeECCCc-----eEEeecCCCCcEEEeeecccccceec-----ccccchhhheEeccc--CC-eEEEEcc
Confidence 46699999999999954 4599999884 889999887543222 334444555665553 33 3477777
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|+.+|
T Consensus 408 yD~t~k 413 (459)
T KOG0272|consen 408 YDNTVK 413 (459)
T ss_pred cCccee
Confidence 776654
No 52
>KOG0315|consensus
Probab=95.81 E-value=0.11 Score=38.82 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=53.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+-|...+-.|.|+|- ...+||||.++ |.|++.... +++-.... .++.-++.|+.|.| ..+|++||.
T Consensus 212 ~ah~~~il~C~lSPd-----~k~lat~ssdktv~iwn~~~~--~kle~~l~--gh~rWvWdc~FS~d----g~YlvTass 278 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPD-----VKYLATCSSDKTVKIWNTDDF--FKLELVLT--GHQRWVWDCAFSAD----GEYLVTASS 278 (311)
T ss_pred ecccceEEEEEECCC-----CcEEEeecCCceEEEEecCCc--eeeEEEee--cCCceEEeeeeccC----ccEEEecCC
Confidence 457778888888883 56799999996 899988775 45544442 35677889999977 467999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|+..|
T Consensus 279 d~~~r 283 (311)
T KOG0315|consen 279 DHTAR 283 (311)
T ss_pred CCcee
Confidence 98765
No 53
>KOG0268|consensus
Probab=95.66 E-value=0.017 Score=44.93 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=54.4
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.++.+|...+-+|.|+|-... |++.+=+ .|.||.....-.=. .|.- .....+++|.||.| ...|.+
T Consensus 266 ~v~~dhvsAV~dVdfsptG~E-----fvsgsyDksIRIf~~~~~~SRd---iYht-kRMq~V~~Vk~S~D----skyi~S 332 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQE-----FVSGSYDKSIRIFPVNHGHSRD---IYHT-KRMQHVFCVKYSMD----SKYIIS 332 (433)
T ss_pred hhhcccceeEEEeccCCCcch-----hccccccceEEEeecCCCcchh---hhhH-hhhheeeEEEEecc----ccEEEe
Confidence 356899999999999996543 7777766 48899887752111 1111 24667999999998 577999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
|+.+|.||
T Consensus 333 GSdd~nvR 340 (433)
T KOG0268|consen 333 GSDDGNVR 340 (433)
T ss_pred cCCCccee
Confidence 99999886
No 54
>KOG0271|consensus
Probab=95.61 E-value=0.1 Score=40.96 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=59.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..-|+..|-+.+|.|.......+.+|+.+++ .|.|++.... ..++-.+ .+...+-|+.|- |.-||.+|+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--~~~~~ls---gHT~~VTCvrwG-----G~gliySgS 265 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--TCVRTLS---GHTASVTCVRWG-----GEGLIYSGS 265 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--eEEEEec---cCccceEEEEEc-----CCceEEecC
Confidence 3568999999999998765567799999988 5999998875 2333333 588999999996 456899999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|+.||
T Consensus 266 ~DrtIk 271 (480)
T KOG0271|consen 266 QDRTIK 271 (480)
T ss_pred CCceEE
Confidence 999986
No 55
>KOG1310|consensus
Probab=95.60 E-value=0.025 Score=46.15 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=47.4
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec--------CC
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD--------LE 72 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d--------~~ 72 (88)
.|...|-++||+++|=|+. .+.++++..++ .|++|.+..... .-.|++-+--+-.|+.- +.
T Consensus 87 sI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~lfdl~~~~~-------~~~d~~~~~~~~~~~cht~rVKria~~ 156 (758)
T KOG1310|consen 87 SISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIKLFDLDSSKE-------GGMDHGMEETTRCWSCHTDRVKRIATA 156 (758)
T ss_pred eeecccccceeEEeeeccC---CCeEEEeccCcceEEEEecccccc-------cccccCccchhhhhhhhhhhhhheecC
Confidence 4677899999999999988 35666666665 699999985210 00022222223334332 11
Q ss_pred -CCceEEEEecCCcEeC
Q psy8253 73 -SGRPLLAVAGSRAVIR 88 (88)
Q Consensus 73 -~~~plLa~aG~~G~Ir 88 (88)
++-...-+|++||.||
T Consensus 157 p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 157 PNGPHTFWSASEDGTIR 173 (758)
T ss_pred CCCCceEEEecCCccee
Confidence 2224577888899886
No 56
>KOG2111|consensus
Probab=95.59 E-value=0.16 Score=38.77 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=52.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..|...|-.++-|- +.-++||++.+. |.|+.-..+ +.|+.++-.-...++|++|.|.+ ..+||+++
T Consensus 178 ~AH~s~Iacv~Ln~-----~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~----~s~LavsS 245 (346)
T KOG2111|consen 178 NAHDSDIACVALNL-----QGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSPN----SSWLAVSS 245 (346)
T ss_pred EcccCceeEEEEcC-----CccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCCC----ccEEEEEc
Confidence 45666777777664 456799999886 777776666 45555544445788999999987 57899999
Q ss_pred CCcEe
Q psy8253 83 SRAVI 87 (88)
Q Consensus 83 ~~G~I 87 (88)
..|.|
T Consensus 246 dKgTl 250 (346)
T KOG2111|consen 246 DKGTL 250 (346)
T ss_pred CCCeE
Confidence 99986
No 57
>KOG0645|consensus
Probab=95.59 E-value=0.14 Score=38.58 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=59.5
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..|-|..++=+|+|++ ....+|||+-++ |-|.+...++.++.+.... ++..++=-|.|-+. .-||+++
T Consensus 100 ~lEGHEnEVK~Vaws~-----sG~~LATCSRDKSVWiWe~deddEfec~aVL~--~HtqDVK~V~WHPt----~dlL~S~ 168 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSA-----SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ--EHTQDVKHVIWHPT----EDLLFSC 168 (312)
T ss_pred eeeccccceeEEEEcC-----CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec--cccccccEEEEcCC----cceeEEe
Confidence 3588999999999997 356799999885 9999999887766665554 46777888999765 3478999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.|..||
T Consensus 169 SYDnTIk 175 (312)
T KOG0645|consen 169 SYDNTIK 175 (312)
T ss_pred ccCCeEE
Confidence 9888876
No 58
>KOG0293|consensus
Probab=95.58 E-value=0.085 Score=41.79 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=51.3
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
++.++|..++|=++|+|. ...+|+..++. +.|++...++.+++.+... .+...+--+.||+|
T Consensus 218 qil~~htdEVWfl~FS~n-----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wSPD 280 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHN-----GKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWSPD 280 (519)
T ss_pred hhHhhCCCcEEEEEEcCC-----CeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEECCC
Confidence 567899999999999984 45699999995 7888888887788877665 46777888999998
No 59
>KOG1273|consensus
Probab=95.56 E-value=0.031 Score=42.96 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=45.1
Q ss_pred eEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
--+|+||+... -+..=|.++||.||++.+-+.-.+|.+ +--.+.+++||.| | .+|.+++.|-+|+
T Consensus 26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS~d---g-r~LltsS~D~si~ 90 (405)
T KOG1273|consen 26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWSRD---G-RKLLTSSRDWSIK 90 (405)
T ss_pred cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEecCC---C-CEeeeecCCceeE
Confidence 56899998652 233446778999999999753333433 3445889999998 3 4588888877663
No 60
>KOG0973|consensus
Probab=95.45 E-value=0.044 Score=46.67 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=50.7
Q ss_pred cCCCCeEEEEEecCCCCCCCC------------EEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPR------------IFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE 72 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~------------~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~ 72 (88)
-|..|+=.|+|||..-.+... +.|+-+.+| +.|+--..-.|+-+++.. .+.++-+.+||.|
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----f~~SI~DmsWspd-- 336 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----FNKSIVDMSWSPD-- 336 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----hcCceeeeeEcCC--
Confidence 477899999999975322222 444444444 888887666677776655 4677888999998
Q ss_pred CCceEEEEecCCcEe
Q psy8253 73 SGRPLLAVAGSRAVI 87 (88)
Q Consensus 73 ~~~plLa~aG~~G~I 87 (88)
|.- |-+.+.||.|
T Consensus 337 -G~~-LfacS~DGtV 349 (942)
T KOG0973|consen 337 -GFS-LFACSLDGTV 349 (942)
T ss_pred -CCe-EEEEecCCeE
Confidence 455 6666777776
No 61
>KOG0265|consensus
Probab=95.41 E-value=0.14 Score=39.04 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=52.3
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
++.-|+..||-++|+| +...||+-|-+| |.+++.-.+ +|..+++ .+...+-.+.|+.| ++. |.+
T Consensus 42 ~l~gh~geI~~~~F~P-----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~~d---~s~-i~S 107 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHP-----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGMRD---GSH-ILS 107 (338)
T ss_pred hcCCCcceEEEEEECC-----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeeccC---CCE-EEE
Confidence 4577999999999999 257899999997 777775544 3455555 45667778899987 355 667
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
+|.|-+|+
T Consensus 108 ~gtDk~v~ 115 (338)
T KOG0265|consen 108 CGTDKTVR 115 (338)
T ss_pred ecCCceEE
Confidence 77766553
No 62
>KOG1009|consensus
Probab=95.25 E-value=0.15 Score=40.04 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=53.9
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
...|+|.+-|-+.... .+||+|++ .|.|.+++.+.+ .++.-.=.-..+..++.+|-|+.+. -|||+|
T Consensus 12 ~~~pv~s~dfq~n~~~----~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g----elLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLN----KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG----ELLASG 83 (434)
T ss_pred CCCceEEEEeccCccc----ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc----Ceeeec
Confidence 4569999999886632 89999999 499999886432 3333322334578899999999872 469999
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
|.+|.|
T Consensus 84 ~D~g~v 89 (434)
T KOG1009|consen 84 GDGGEV 89 (434)
T ss_pred CCCceE
Confidence 998876
No 63
>KOG0276|consensus
Probab=95.17 E-value=0.13 Score=42.56 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=59.6
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
+..|.|..=+..++|||-+ +..||++.=+| |.|+++....+...|+ .++..+.++..=.- ..+|+|++
T Consensus 134 qtfeGH~HyVMqv~fnPkD----~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~--gdkpylIs 202 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKD----PNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTG--GDKPYLIS 202 (794)
T ss_pred eEEcCcceEEEEEEecCCC----ccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccC--CCcceEEe
Confidence 4578899999999999965 56799999887 9999999875544444 46777888865433 56899999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
|+.|-.||
T Consensus 203 gaDD~tiK 210 (794)
T KOG0276|consen 203 GADDLTIK 210 (794)
T ss_pred cCCCceEE
Confidence 99988775
No 64
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.94 E-value=0.33 Score=33.58 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeC----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVG----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+..+.-.+.|+|. .+.+|++| .+.+.+|+... .+.|..+. ....-.++|+.| |+- |+++.
T Consensus 99 ~~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~----~~~~t~~~WsPd---Gr~-~~ta~ 162 (194)
T PF08662_consen 99 GTQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVRK---KKKISTFE----HSDATDVEWSPD---GRY-LATAT 162 (194)
T ss_pred cCCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECCC---CEEeeccc----cCcEEEEEEcCC---CCE-EEEEE
Confidence 4456677888884 34677776 23589999985 36777663 234678999988 555 44444
No 65
>KOG0315|consensus
Probab=94.78 E-value=0.11 Score=38.83 Aligned_cols=58 Identities=10% Similarity=0.280 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 24 QPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+...+|+.|..+|.+|++..+.+ ..+..|. .+..++-+|..-+| ...+.+||+||.+|
T Consensus 51 dk~~LAaa~~qhvRlyD~~S~np-~Pv~t~e--~h~kNVtaVgF~~d----grWMyTgseDgt~k 108 (311)
T KOG0315|consen 51 DKKDLAAAGNQHVRLYDLNSNNP-NPVATFE--GHTKNVTAVGFQCD----GRWMYTGSEDGTVK 108 (311)
T ss_pred CcchhhhccCCeeEEEEccCCCC-CceeEEe--ccCCceEEEEEeec----CeEEEecCCCceEE
Confidence 56778999999999999999865 4777784 46789999999888 46799999999986
No 66
>KOG0279|consensus
Probab=94.50 E-value=0.25 Score=37.32 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
..=+-.|.|.|.. .+++++.+|-++ |.|..+.. +++.+.|. .+.-.+.+|+-|+| -.|++.||++|.
T Consensus 148 ~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~--gh~~~v~t~~vSpD----GslcasGgkdg~ 215 (315)
T KOG0279|consen 148 REWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRN---CQLRTTFI--GHSGYVNTVTVSPD----GSLCASGGKDGE 215 (315)
T ss_pred cCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCC---cchhhccc--cccccEEEEEECCC----CCEEecCCCCce
Confidence 5668899999965 588999999986 88888765 58888775 47888999999988 356889999997
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
+
T Consensus 216 ~ 216 (315)
T KOG0279|consen 216 A 216 (315)
T ss_pred E
Confidence 6
No 67
>KOG1332|consensus
Probab=94.42 E-value=0.12 Score=38.64 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=57.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.-|..|++-|+|-. |....++|.|.=++ |.|.+=... .--|.|...++..++.+++|..-.. -.+||+|+.
T Consensus 53 ~Gh~GPVwqv~wah---Pk~G~iLAScsYDgkVIiWke~~g---~w~k~~e~~~h~~SVNsV~waphey--gl~LacasS 124 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAH---PKFGTILASCSYDGKVIIWKEENG---RWTKAYEHAAHSASVNSVAWAPHEY--GLLLACASS 124 (299)
T ss_pred cCCCCCeeEEeecc---cccCcEeeEeecCceEEEEecCCC---chhhhhhhhhhcccceeeccccccc--ceEEEEeeC
Confidence 45788999998854 33567899999774 777775543 3345566667899999999998733 578999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.|+
T Consensus 125 DG~vs 129 (299)
T KOG1332|consen 125 DGKVS 129 (299)
T ss_pred CCcEE
Confidence 99884
No 68
>KOG0647|consensus
Probab=94.35 E-value=0.13 Score=39.27 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCeEEEEEecCCCCCCCCEE-EEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIF-ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~f-AtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
...|-+++|+| . ...++ |.-=.+.|.||++..+|-...-... ..+.-+.+|+|+.| | .++.+||-|+.
T Consensus 27 ~DsIS~l~FSP-~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~---~~~~PvL~v~Wsdd---g-skVf~g~~Dk~ 95 (347)
T KOG0647|consen 27 EDSISALAFSP-Q---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ---SHDGPVLDVCWSDD---G-SKVFSGGCDKQ 95 (347)
T ss_pred ccchheeEecc-c---cCceEEecccCCceEEEEEecCCcccchhhh---ccCCCeEEEEEccC---C-ceEEeeccCCc
Confidence 34678899999 2 22333 4444568999999997533321122 35777999999988 3 45888888876
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
+|
T Consensus 96 ~k 97 (347)
T KOG0647|consen 96 AK 97 (347)
T ss_pred eE
Confidence 54
No 69
>KOG0293|consensus
Probab=94.28 E-value=0.12 Score=40.91 Aligned_cols=70 Identities=23% Similarity=0.438 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeE-EEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRV-SIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v-~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..|+--+.|+| +++.+.+||...+ ...+..++ .....|... .+-++-+|+|++| |.. +++|+.
T Consensus 266 vgh~~~V~yi~wSP-----DdryLlaCg~~e~~~lwDv~tg---d~~~~y~~~-~~~S~~sc~W~pD---g~~-~V~Gs~ 332 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSP-----DDRYLLACGFDEVLSLWDVDTG---DLRHLYPSG-LGFSVSSCAWCPD---GFR-FVTGSP 332 (519)
T ss_pred ecccCceEEEEECC-----CCCeEEecCchHheeeccCCcc---hhhhhcccC-cCCCcceeEEccC---Cce-eEecCC
Confidence 66778888888887 3566888998864 33444443 555666543 5788999999999 344 788888
Q ss_pred CcEe
Q psy8253 84 RAVI 87 (88)
Q Consensus 84 ~G~I 87 (88)
|+.|
T Consensus 333 dr~i 336 (519)
T KOG0293|consen 333 DRTI 336 (519)
T ss_pred CCcE
Confidence 7765
No 70
>KOG0301|consensus
Probab=94.24 E-value=0.22 Score=41.34 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=46.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..-+|++. +. ...+++++||.+| +.|+.-. +.+|.+..|. ++.|+.......- |++||.|
T Consensus 217 ghtn~vYsis---~~--~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPt------tsiWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 217 GHTNFVYSIS---MA--LSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPT------TSIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred ccceEEEEEE---ec--CCCCeEEEecCCceEEEeecC-----ceEEEEecCc------cceEEEEEeeCCC-EEEeccC
Confidence 3444567766 22 3578999999997 8888755 7778887652 3778877442223 8999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|+||
T Consensus 280 G~Vr 283 (745)
T KOG0301|consen 280 GRVR 283 (745)
T ss_pred ceEE
Confidence 9997
No 71
>KOG1274|consensus
Probab=94.19 E-value=0.37 Score=41.05 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=49.9
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC------------------------------------
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG------------------------------------ 45 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~------------------------------------ 45 (88)
..+.|+.|+-++.|+|-. ..+|+...+ .|+||++....
T Consensus 133 ~lrgh~apVl~l~~~p~~-----~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKG-----NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred eecccCCceeeeeEcCCC-----CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 457899999999999843 334444433 57777765420
Q ss_pred -----------CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 46 -----------SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 46 -----------~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
+-+++..++|.+..-.|.+++|+.- | .+||+++.+|.|
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn---G-~YiAAs~~~g~I 256 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN---G-KYIAASTLDGQI 256 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCC---C-cEEeeeccCCcE
Confidence 0022224555555555999999976 3 469999999976
No 72
>KOG0307|consensus
Probab=94.16 E-value=0.054 Score=46.54 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=55.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+|..+|-++.|||+. ..+.|..+++ .|.|++|..- .+...- .....+++-+++|.... .++||+|
T Consensus 112 ~~~h~G~V~gLDfN~~q----~nlLASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkv---qhILAS~ 180 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQ----GNLLASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKV---SHILASG 180 (1049)
T ss_pred hcccCCceeeeeccccC----CceeeccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhh---hHHhhcc
Confidence 57899999999999987 4678888888 5999999863 232222 22468899999999873 4678888
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
+.+|.+
T Consensus 181 s~sg~~ 186 (1049)
T KOG0307|consen 181 SPSGRA 186 (1049)
T ss_pred CCCCCc
Confidence 888753
No 73
>KOG0284|consensus
Probab=94.10 E-value=0.1 Score=41.13 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=51.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
-|...|-+++|+|- +..|++|..+ +|.|.....-.+-.+| ..+.-++-+|.|-.. +-|||+||.+
T Consensus 178 hh~eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP~----kgLiasgskD 243 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHPT----KGLIASGSKD 243 (464)
T ss_pred hhhhhhheeccCCC-----CceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCCc----cceeEEccCC
Confidence 34478899999993 4569999988 5777776554333444 257888999999876 6789999998
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
..||
T Consensus 244 nlVK 247 (464)
T KOG0284|consen 244 NLVK 247 (464)
T ss_pred ceeE
Confidence 8765
No 74
>KOG0641|consensus
Probab=93.68 E-value=0.49 Score=35.32 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=47.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.-|+..||+++++| ..++.||=+++. |.+.+++.+.. -++.... ++-.+-+.|+-.+++++..+|+
T Consensus 86 khhkgsiyc~~ws~-----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm----hdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSP-----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM----HDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred cccCccEEEEEecC-----ccCeEEecCCCceEEEEecccccccccCcceeeee----cCCceeeeEEecCCCcCceEEE
Confidence 45888999999998 356788766664 77777776521 1222333 3445666788888888888888
Q ss_pred EecC
Q psy8253 80 VAGS 83 (88)
Q Consensus 80 ~aG~ 83 (88)
.||.
T Consensus 157 s~ga 160 (350)
T KOG0641|consen 157 SAGA 160 (350)
T ss_pred ecCC
Confidence 8774
No 75
>KOG0279|consensus
Probab=93.64 E-value=0.52 Score=35.65 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=47.4
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
+..+-|..-+-+|+|+|-.. |+ +-|.. -+.++....+ ++. ...+..+.+-+.|+.|++. +.+|+|+
T Consensus 99 ~~f~GH~~dVlsva~s~dn~----qi--vSGSrDkTiklwnt~g~--ck~--t~~~~~~~~WVscvrfsP~--~~~p~Iv 166 (315)
T KOG0279|consen 99 RRFVGHTKDVLSVAFSTDNR----QI--VSGSRDKTIKLWNTLGV--CKY--TIHEDSHREWVSCVRFSPN--ESNPIIV 166 (315)
T ss_pred EEEEecCCceEEEEecCCCc----ee--ecCCCcceeeeeeeccc--EEE--EEecCCCcCcEEEEEEcCC--CCCcEEE
Confidence 34578899999999998543 22 11221 1333332221 111 1222233889999999987 4589999
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
.+|.|+.+|
T Consensus 167 s~s~DktvK 175 (315)
T KOG0279|consen 167 SASWDKTVK 175 (315)
T ss_pred EccCCceEE
Confidence 999999886
No 76
>KOG0290|consensus
Probab=93.28 E-value=0.43 Score=36.46 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=55.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-Ce---------------eEEEEE--------------E
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-SI---------------KLLQCY--------------A 54 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-~~---------------~~l~~~--------------~ 54 (88)
-+|-.|.-.+.|+|-.....++++||.| +.+.++|..++. ++ ..|-+| .
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 3677888889999977655678888875 677888877532 11 111111 0
Q ss_pred c--------------------CCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 55 D--------------------PDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 55 d--------------------~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
| =-++.++|+++|... +..+.|+-|.||.+|
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~---s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG---SRDVFASVGADGSVR 222 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccC---ccceEEEecCCCcEE
Confidence 0 036889999999985 567799999999987
No 77
>KOG0647|consensus
Probab=93.26 E-value=0.88 Score=34.82 Aligned_cols=73 Identities=14% Similarity=0.377 Sum_probs=54.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
...|..|+.+|.|+- +.+.+|+....+.+.++++..+ ++.|.- -++..+-+|.|-.-. ..++|++|+-
T Consensus 68 ~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S~---Q~~~v~---~Hd~pvkt~~wv~~~--~~~cl~TGSW 135 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLASG---QVSQVA---AHDAPVKTCHWVPGM--NYQCLVTGSW 135 (347)
T ss_pred hhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccCC---Ceeeee---ecccceeEEEEecCC--CcceeEeccc
Confidence 467889999999985 2488999999999999999997 333333 356678888887652 2677888877
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|-.||
T Consensus 136 DKTlK 140 (347)
T KOG0647|consen 136 DKTLK 140 (347)
T ss_pred cccee
Confidence 76664
No 78
>KOG1063|consensus
Probab=93.22 E-value=0.25 Score=41.09 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=56.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCc-eEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGR-PLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~-plLa~aG 82 (88)
+.|..=||+|.|+|+..- |||++-+ .|.|++.+.+.. +-+..+.-.+..+.+-+++|..-.-+.. -++++|=
T Consensus 615 k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 615 KAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred cccceEEEEcccCcccce-----eEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 578889999999997642 9999988 499999988732 3333333346789999999997633333 3678888
Q ss_pred CCcEe
Q psy8253 83 SRAVI 87 (88)
Q Consensus 83 ~~G~I 87 (88)
+.|.|
T Consensus 689 e~GeI 693 (764)
T KOG1063|consen 689 EKGEI 693 (764)
T ss_pred cccEE
Confidence 88876
No 79
>KOG4378|consensus
Probab=93.15 E-value=0.33 Score=39.42 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=53.5
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
+.-|.|+.|.-|+-|+|-. +.+|++||=+ +|.+|+.....-..- -.| +.-|-++|.+.+ -.+||+
T Consensus 202 ~~~~~HsAP~~gicfspsn----e~l~vsVG~Dkki~~yD~~s~~s~~~-l~y-----~~Plstvaf~~~----G~~L~a 267 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSN----EALLVSVGYDKKINIYDIRSQASTDR-LTY-----SHPLSTVAFSEC----GTYLCA 267 (673)
T ss_pred chhhhccCCcCcceecCCc----cceEEEecccceEEEeecccccccce-eee-----cCCcceeeecCC----ceEEEe
Confidence 3457899999999999965 6789999987 799999885421111 133 344888988876 345999
Q ss_pred ecCCcEe
Q psy8253 81 AGSRAVI 87 (88)
Q Consensus 81 aG~~G~I 87 (88)
|..+|.|
T Consensus 268 G~s~G~~ 274 (673)
T KOG4378|consen 268 GNSKGEL 274 (673)
T ss_pred ecCCceE
Confidence 9999986
No 80
>KOG0305|consensus
Probab=93.01 E-value=0.61 Score=37.33 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=46.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe---EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR---VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~---v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
..+|...+.+.+|+|+. ..++|+-||-. |.++..... +.|+.. |..-.+++++|++.
T Consensus 339 ~~~H~aAVKA~awcP~q----~~lLAsGGGs~D~~i~fwn~~~g---~~i~~v---dtgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQ----SGLLATGGGSADRCIKFWNTNTG---ARIDSV---DTGSQVCSLIWSKK 398 (484)
T ss_pred EeccceeeeEeeeCCCc----cCceEEcCCCcccEEEEEEcCCC---cEeccc---ccCCceeeEEEcCC
Confidence 36899999999999987 56799988874 777776654 666666 78999999999987
No 81
>KOG0305|consensus
Probab=92.79 E-value=0.46 Score=38.01 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=47.8
Q ss_pred CCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 19 LLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 19 ~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+.+|...+++|+.=+..|++++-..+ ++.+.... + ++.++++.|+.+ |.. ||+|-.+|.|.
T Consensus 182 lldWss~n~laValg~~vylW~~~s~---~v~~l~~~-~-~~~vtSv~ws~~---G~~-LavG~~~g~v~ 242 (484)
T KOG0305|consen 182 LLDWSSANVLAVALGQSVYLWSASSG---SVTELCSF-G-EELVTSVKWSPD---GSH-LAVGTSDGTVQ 242 (484)
T ss_pred HhhcccCCeEEEEecceEEEEecCCC---ceEEeEec-C-CCceEEEEECCC---CCE-EEEeecCCeEE
Confidence 35678888999999999999998886 34444432 2 899999999988 455 99999999873
No 82
>KOG1524|consensus
Probab=92.77 E-value=0.64 Score=38.16 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=52.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
....++|++++-|-. ....-|-++++.|=.+.++ .++||.- .++--+-+|.|+.. .-||++||+|=
T Consensus 143 Q~~~~v~c~~W~p~S-----~~vl~c~g~h~~IKpL~~n--~k~i~Wk---AHDGiiL~~~W~~~----s~lI~sgGED~ 208 (737)
T KOG1524|consen 143 QNEESIRCARWAPNS-----NSIVFCQGGHISIKPLAAN--SKIIRWR---AHDGLVLSLSWSTQ----SNIIASGGEDF 208 (737)
T ss_pred hcCceeEEEEECCCC-----CceEEecCCeEEEeecccc--cceeEEe---ccCcEEEEeecCcc----ccceeecCCce
Confidence 456899999998843 3366788889888887775 5888876 46778999999976 56799999874
Q ss_pred E
Q psy8253 86 V 86 (88)
Q Consensus 86 ~ 86 (88)
+
T Consensus 209 k 209 (737)
T KOG1524|consen 209 R 209 (737)
T ss_pred e
Confidence 3
No 83
>KOG0268|consensus
Probab=92.68 E-value=0.37 Score=37.65 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=28.3
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCe
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSI 47 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~ 47 (88)
.|-+|+|||-. ..++|++|.+| |.+|++-++.|+
T Consensus 189 ti~svkfNpvE----TsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 189 SISSVKFNPVE----TSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred ceeEEecCCCc----chheeeeccCCceEEEecccCCcc
Confidence 56789999854 78999998886 999999998764
No 84
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=92.61 E-value=0.48 Score=21.25 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+...+.+++|... ..++++++.+|.|+
T Consensus 11 ~~~~i~~~~~~~~----~~~~~~~~~d~~~~ 37 (40)
T smart00320 11 HTGPVTSVAFSPD----GKYLASASDDGTIK 37 (40)
T ss_pred cCCceeEEEECCC----CCEEEEecCCCeEE
Confidence 4567899999865 25799999999874
No 85
>KOG0269|consensus
Probab=92.50 E-value=0.22 Score=41.78 Aligned_cols=67 Identities=12% Similarity=0.242 Sum_probs=46.0
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+-+|+|+|-. ...||++-.+ .+..+++-+-..++. .+ .-++--++||-|.++ +.+||+||.|+.||
T Consensus 178 SiRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~--k~--~AH~GpV~c~nwhPn----r~~lATGGRDK~vk 245 (839)
T KOG0269|consen 178 SIRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEK--KL--TAHNGPVLCLNWHPN----REWLATGGRDKMVK 245 (839)
T ss_pred hhhceeeccCC----CceEEEecCCceEEEeeccCchhHHH--Hh--hcccCceEEEeecCC----CceeeecCCCccEE
Confidence 56689999854 5678887655 466666654211111 11 135777999999985 67899999999886
No 86
>KOG1407|consensus
Probab=92.41 E-value=1.1 Score=33.72 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.8
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.+..-|+|||-+. .||||-|+.+
T Consensus 271 ~~~~t~tVAWHPk----~~LLAyA~dd 293 (313)
T KOG1407|consen 271 CEGPTFTVAWHPK----RPLLAYACDD 293 (313)
T ss_pred ccCCceeEEecCC----CceeeEEecC
Confidence 4677899999876 7999998764
No 87
>KOG1587|consensus
Probab=92.15 E-value=1.2 Score=36.14 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=57.5
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
-..++.+++|+||.+ .-+++=+-.+.|.++.+...+. ...+.. .+-.+.+....+.|..+..+ .. +.+++.|
T Consensus 241 ~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~-~~~sh~~~v~~vvW~~~~~~-~~-f~s~ssD 314 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTPPSGLSA-LEVSHSEPVTAVVWLQNEHN-TE-FFSLSSD 314 (555)
T ss_pred cCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCCCccccc-ccccCCcCeEEEEEeccCCC-Cc-eEEEecC
Confidence 346899999999985 5677778888999999988653 333333 33358999999999998654 66 7788889
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|.
T Consensus 315 G~i~ 318 (555)
T KOG1587|consen 315 GSIC 318 (555)
T ss_pred CcEe
Confidence 9873
No 88
>KOG0291|consensus
Probab=92.06 E-value=1.1 Score=38.00 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=54.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-----CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-----SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-----~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
..+.++-+++|+|. ...||++-+|-+.|++.|..- |..+-+.|. .+-+++-++.|+-| .-+|++
T Consensus 94 ~fk~~v~~i~fSPn-----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~--g~fddi~si~Ws~D----Sr~l~~ 162 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPN-----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYL--GHFDDITSIDWSDD----SRLLVT 162 (893)
T ss_pred eecCccceEEECCC-----CcEEEEEecceeEEEecCcchhcccCcceEeeeec--CCccceeEEEeccC----CceEEe
Confidence 45678889999984 356999999999999998742 345556664 46788999999988 467888
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
|+.|-..|
T Consensus 163 gsrD~s~r 170 (893)
T KOG0291|consen 163 GSRDLSAR 170 (893)
T ss_pred ccccceEE
Confidence 88775543
No 89
>KOG0269|consensus
Probab=92.01 E-value=0.13 Score=43.17 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=51.1
Q ss_pred EEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 13 GAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 13 ~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+|+++.+ ..++.|||..+ -|.||.+...+.=++|+.|. +++....++.|..- ...+|++||.||.||
T Consensus 92 DVkW~~~----~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 92 DVKWGQL----YSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--EHERSANKLDFHST---EPNILISGSQDGTVK 159 (839)
T ss_pred hcccccc----hhhhheeecCCCcEEEEecCccccchhhhHhh--hhccceeeeeeccC---CccEEEecCCCceEE
Confidence 4555533 37889999988 49999999843336677775 57889999999865 345799999999986
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.97 E-value=1.2 Score=30.63 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=32.3
Q ss_pred CEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 26 RIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 26 ~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+|++. +.+++.|++.... ++++... ......+++|+.+ +.-|+++++.+|.|+
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~---~~~~~~~---~~~~~~~~~~~~~---g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTY---EVLDYLL---VGQRVWQLAFTPD---EKYLLTTNGVSNDVS 274 (300)
T ss_pred EEEEEcCCCCeEEEEECCCC---cEEEEEE---eCCCcceEEECCC---CCEEEEEcCCCCeEE
Confidence 345544 4568999987643 4444332 2345788999876 344344456678764
No 91
>KOG4328|consensus
Probab=91.83 E-value=0.38 Score=38.33 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=55.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCee--EEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIK--LLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~--~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+-|+.-|-++++||-. +..+||+|-++ +.||++-.-++-. +|..+ ++.-.+.+...|.+ +|. |++-
T Consensus 319 ~lh~kKI~sv~~NP~~----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~---~HrrsV~sAyFSPs--~gt--l~TT 387 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVC----PWFLATASLDQTAKIWDLRQLRGKASPFLSTL---PHRRSVNSAYFSPS--GGT--LLTT 387 (498)
T ss_pred hhhhcccceeecCCCC----chheeecccCcceeeeehhhhcCCCCcceecc---cccceeeeeEEcCC--CCc--eEee
Confidence 5677789999999965 56799999998 5599987644322 56666 78888999988877 555 7777
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.|..||
T Consensus 388 ~~D~~IR 394 (498)
T KOG4328|consen 388 CQDNEIR 394 (498)
T ss_pred ccCCceE
Confidence 7776665
No 92
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.68 E-value=2.3 Score=35.19 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=31.2
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD 43 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~ 43 (88)
.++|+.+.|....+.+.++|+--+++|+|+++-+
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 6899999999887888999999999999999875
No 93
>KOG1645|consensus
Probab=91.62 E-value=0.46 Score=37.51 Aligned_cols=69 Identities=16% Similarity=0.377 Sum_probs=49.5
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
++.-|-+++|+||... --.+|..| +.+.|.++... .++++| +.....++|+|..|. .+.|-+|-.+|.
T Consensus 192 ~g~~IrdlafSp~~~G--Ll~~asl~-nkiki~dlet~---~~vssy---~a~~~~wSC~wDlde---~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEG--LLGLASLG-NKIKIMDLETS---CVVSSY---IAYNQIWSCCWDLDE---RHVIYAGLQNGM 259 (463)
T ss_pred cchhhhhhccCccccc--eeeeeccC-ceEEEEecccc---eeeehe---eccCCceeeeeccCC---cceeEEeccCce
Confidence 4556778888888742 23445443 57889999887 677777 456889999999983 455777777887
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
|
T Consensus 260 V 260 (463)
T KOG1645|consen 260 V 260 (463)
T ss_pred E
Confidence 6
No 94
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=91.55 E-value=2.7 Score=28.66 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=48.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+.|...+.+++|.|... .+++.+ ...+.+++.... +.++.+.. +...+.+++|+.+ +..+++.+
T Consensus 151 ~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~v~~~~~~~~---~~~~~~~~ 217 (466)
T COG2319 151 LEGHSESVTSLAFSPDGK-----LLASGSSLDGTIKLWDLRTG---KPLSTLAG--HTDPVSSLAFSPD---GGLLIASG 217 (466)
T ss_pred EecCcccEEEEEECCCCC-----EEEecCCCCCceEEEEcCCC---ceEEeecc--CCCceEEEEEcCC---cceEEEEe
Confidence 356778888999998664 566666 567999988874 33444432 6888999999943 23344444
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 218 ~~d~~i~ 224 (466)
T COG2319 218 SSDGTIR 224 (466)
T ss_pred cCCCcEE
Confidence 8888764
No 95
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.36 E-value=0.48 Score=26.14 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=23.4
Q ss_pred cCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 55 DPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 55 d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
+....+.+-+++||+. ..|||+|-.+|.|
T Consensus 7 ~k~l~~~v~~~~w~P~----mdLiA~~t~~g~v 35 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPT----MDLIALGTEDGEV 35 (47)
T ss_pred ccCCCCcEEEEEECCC----CCEEEEEECCCeE
Confidence 3345667889999987 5799999999976
No 96
>KOG2055|consensus
Probab=91.30 E-value=2.1 Score=34.34 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=48.6
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.+-+..|. .+...+.|+.|.+.|.|+.+.+. .+++.|.|+ ..++.-+-|... ++ .+||+|+..|+|
T Consensus 346 ~v~~~~fs----Sdsk~l~~~~~~GeV~v~nl~~~---~~~~rf~D~---G~v~gts~~~S~-ng-~ylA~GS~~GiV 411 (514)
T KOG2055|consen 346 VVSDFTFS----SDSKELLASGGTGEVYVWNLRQN---SCLHRFVDD---GSVHGTSLCISL-NG-SYLATGSDSGIV 411 (514)
T ss_pred EEeeEEEe----cCCcEEEEEcCCceEEEEecCCc---ceEEEEeec---CccceeeeeecC-CC-ceEEeccCcceE
Confidence 44555665 23478888888889999999987 899999884 445666655442 23 389999999987
No 97
>KOG1445|consensus
Probab=91.01 E-value=0.32 Score=40.71 Aligned_cols=76 Identities=25% Similarity=0.454 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC--------------CC--eeEEE----------------
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG--------------GS--IKLLQ---------------- 51 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~--------------~~--~~~l~---------------- 51 (88)
.-|+..+-+..|+||.+ -++|||+.++ |.|++++.+ ++ ++.|+
T Consensus 76 ~~H~d~VtDl~FspF~D----~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFAD----ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred ecccceeeccCccccch----hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 45788889999999974 4688888886 888888842 11 23333
Q ss_pred -----------EEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 52 -----------CYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 52 -----------~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+....+.|-+-+..|++| -.||++++++-.||
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseD----G~llatscKdkqir 195 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSED----GKLLATSCKDKQIR 195 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccC----CceEeeecCCcceE
Confidence 1111356777888899988 35699998887765
No 98
>KOG0283|consensus
Probab=90.98 E-value=0.66 Score=38.72 Aligned_cols=36 Identities=14% Similarity=0.473 Sum_probs=29.9
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD 43 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~ 43 (88)
+...|+..||+++|+| +..+.|+.|.+. |+|+++..
T Consensus 262 ~~~ah~gaIw~mKFS~-----DGKyLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSH-----DGKYLASAGEDGVIRVWKVIE 298 (712)
T ss_pred cccccCCcEEEEEeCC-----CCceeeecCCCceEEEEEEec
Confidence 3447999999999998 457899999996 88888766
No 99
>KOG0973|consensus
Probab=90.81 E-value=1.6 Score=37.64 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC------C---CC---e---eEEEEEEcCCCCCceeEEEEe
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD------G---GS---I---KLLQCYADPDIEENFYTCAWS 68 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~------~---~~---~---~~l~~~~d~d~~e~~y~~aWs 68 (88)
++|-+++-+|+|.|- .+.||+-+.++ |.|.+-.. . |+ . +....+ ..++-++-+++|+
T Consensus 66 ~~h~~sv~CVR~S~d-----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l--~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPD-----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL--RGHDSDVLDVNWS 138 (942)
T ss_pred ccccCceeEEEECCC-----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE--ecCCCccceeccC
Confidence 789999999999983 56799888887 56776653 0 11 1 222233 3578889999999
Q ss_pred ecCCCCceEEEEecCCcEe
Q psy8253 69 MDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 69 ~d~~~~~plLa~aG~~G~I 87 (88)
++ ..+||..|.++.|
T Consensus 139 p~----~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 139 PD----DSLLVSVSLDNSV 153 (942)
T ss_pred CC----ccEEEEecccceE
Confidence 97 5789999998876
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.06 E-value=2.1 Score=29.38 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=34.6
Q ss_pred CEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 26 RIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 26 ~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+|++.+.+ .+.++++... +.++.+.. .+....++|+.+ +.-++++++.++.|+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~---~~~~~~~~---~~~~~~l~~~~d---g~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL---EVTRTFPV---GQRPRGITLSKD---GKLLYVCASDSDTIQ 56 (300)
T ss_pred cEEEEecCCCEEEEEECCCC---ceEEEEEC---CCCCCceEECCC---CCEEEEEECCCCeEE
Confidence 467777755 6899988665 45555532 234567899866 345556777777653
No 101
>KOG1523|consensus
Probab=89.40 E-value=2.3 Score=32.82 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=50.5
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl 77 (88)
...+|...+-++.++|... -..||+.+| .+|++.+.++. +.+|+ + +..--+|.|+.. ..+
T Consensus 50 tls~Hd~~vtgvdWap~sn-----rIvtcs~drnayVw~~~~~~~WkptlvLlR-i-----NrAAt~V~WsP~----enk 114 (361)
T KOG1523|consen 50 TLSEHDKIVTGVDWAPKSN-----RIVTCSHDRNAYVWTQPSGGTWKPTLVLLR-I-----NRAATCVKWSPK----ENK 114 (361)
T ss_pred ehhhhCcceeEEeecCCCC-----ceeEccCCCCccccccCCCCeeccceeEEE-e-----ccceeeEeecCc----Cce
Confidence 3468889999999998653 378999886 99999988763 33333 2 555678999977 235
Q ss_pred EEEecCCcEe
Q psy8253 78 LAVAGSRAVI 87 (88)
Q Consensus 78 La~aG~~G~I 87 (88)
+|+||.-.+|
T Consensus 115 FAVgSgar~i 124 (361)
T KOG1523|consen 115 FAVGSGARLI 124 (361)
T ss_pred EEeccCccEE
Confidence 7887765544
No 102
>KOG0288|consensus
Probab=89.25 E-value=1.8 Score=34.34 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 12 FGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 12 y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
-.+.|+| ...++|+=|.+ +|+|++.... ++.+.-.-...+..+.+|+|++. |.+ |++++..+
T Consensus 391 trvvfSp-----d~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~s---G~~-Llsadk~~ 453 (459)
T KOG0288|consen 391 TRVVFSP-----DGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPS---GSG-LLSADKQK 453 (459)
T ss_pred ceeEECC-----CCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCC---Cch-hhcccCCc
Confidence 3456665 34556665555 6999999987 44444444345558999999985 778 44444443
No 103
>KOG0270|consensus
Probab=88.86 E-value=1.8 Score=34.49 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=50.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..-|..+|-++.+|+.. +.+.+|.|+++ |.+..+..+.+ +...+.+.- .- +++.+.+++. .-.||+|
T Consensus 369 ~~AHd~~ISgl~~n~~~----p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---~r---l~c~~~~~~~-a~~la~G 437 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQT----PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---GR---LHCFALDPDV-AFTLAFG 437 (463)
T ss_pred EEeccCCcceEEecCCC----CcceeeccccceEEEEeecCCCCcccccccccc---cc---eeecccCCCc-ceEEEec
Confidence 35688899999999977 45688888885 88999887755 333344421 11 4555666543 3459999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.++.+|
T Consensus 438 G~k~~~~ 444 (463)
T KOG0270|consen 438 GEKAVLR 444 (463)
T ss_pred CccceEE
Confidence 9998764
No 104
>KOG0772|consensus
Probab=88.54 E-value=1 Score=36.79 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcC-CCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADP-DIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~-d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
+-|+-.|+|||-. ..+.|.|+.+.|++++.... .+...-.+.|. +...++-|+++|+| |+- |++=|+|+.
T Consensus 317 Rv~~tsC~~nrdg----~~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~d---g~~-LlSRg~D~t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDG----KLIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYD---GNY-LLSRGFDDT 387 (641)
T ss_pred ccCceeeecCCCc----chhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccc---cch-hhhccCCCc
Confidence 4577889999844 44888999999999997432 22333333332 34568999999999 444 788888877
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
+|
T Consensus 388 LK 389 (641)
T KOG0772|consen 388 LK 389 (641)
T ss_pred ee
Confidence 64
No 105
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=88.29 E-value=1.8 Score=25.67 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCCC-eeEEEEEE
Q psy8253 24 QPRIFATV-GSNRVSIYECPDGGS-IKLLQCYA 54 (88)
Q Consensus 24 ~~~~fAtv-G~~~v~Vy~~~~~~~-~~~l~~~~ 54 (88)
....||++ -.+.|.||+..++.+ +++++.+.
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L~KE~~ 60 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNEITLKKEFY 60 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTEEEEEEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCeEEEEEeee
Confidence 47789999 455799999999876 88888764
No 106
>KOG1539|consensus
Probab=87.93 E-value=2.1 Score=36.57 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=41.4
Q ss_pred EEEE-eCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 27 IFAT-VGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 27 ~fAt-vG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++|+ +.++.|+|+.+-.| ++|.+|+.+ ...+-.++...| |.|+||+|+..|.|
T Consensus 216 VVaiG~~~G~ViifNlK~d---kil~sFk~d--~g~VtslSFrtD---G~p~las~~~~G~m 269 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFD---KILMSFKQD--WGRVTSLSFRTD---GNPLLASGRSNGDM 269 (910)
T ss_pred EEEEeccCceEEEEEcccC---cEEEEEEcc--ccceeEEEeccC---CCeeEEeccCCceE
Confidence 4443 34668999999998 889999763 466788888766 89999999999965
No 107
>KOG1007|consensus
Probab=87.88 E-value=1.8 Score=33.21 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=49.3
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.|...|++-+-++.|||.. .-++||||.+ .|.|+++-.-. ..++.- +++.--+++|-.. + ..++||.+
T Consensus 208 sI~dAHgq~vrdlDfNpnk----q~~lvt~gDdgyvriWD~R~tk--~pv~el--~~HsHWvW~VRfn--~-~hdqLiLs 276 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNK----QHILVTCGDDGYVRIWDTRKTK--FPVQEL--PGHSHWVWAVRFN--P-EHDQLILS 276 (370)
T ss_pred chhhhhcceeeeccCCCCc----eEEEEEcCCCccEEEEeccCCC--cccccc--CCCceEEEEEEec--C-ccceEEEe
Confidence 4667899999999999965 5689999998 69999987632 233322 1233333333322 2 23678888
Q ss_pred ecCCcEe
Q psy8253 81 AGSRAVI 87 (88)
Q Consensus 81 aG~~G~I 87 (88)
||.|..|
T Consensus 277 ~~SDs~V 283 (370)
T KOG1007|consen 277 GGSDSAV 283 (370)
T ss_pred cCCCcee
Confidence 8887654
No 108
>KOG2106|consensus
Probab=87.80 E-value=7.3 Score=31.89 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.1
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeec
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
++.+ +.|+-.|+|+|-- ..||+-..+ .|+||++..++. ...+..+. ..-+-..-||.|
T Consensus 443 ~~~d-~~~ls~v~ysp~G-----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~----gs~ithLDwS~D 502 (626)
T KOG2106|consen 443 IHTD-NEQLSVVRYSPDG-----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCS----GSPITHLDWSSD 502 (626)
T ss_pred EEec-CCceEEEEEcCCC-----CEEEEecCCCeEEEEEECCCCcEEEEeeeec----CceeEEeeecCC
Confidence 4556 7899999999943 456666655 699999999875 33344432 244555667766
No 109
>KOG2048|consensus
Probab=87.55 E-value=5.9 Score=33.08 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=43.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+-.+.+||+.+-||-.. -+.+| .+. +..+...++ ++...-.-.-.+--+.+++|..+ + ..||.|+
T Consensus 107 d~~gg~IWsiai~p~~~------~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~~---~-~~i~~Gs 173 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENT------ILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNPT---G-TKIAGGS 173 (691)
T ss_pred cCCCcceeEEEeCCccc------eEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecCC---c-cEEEecc
Confidence 45677888888888442 34445 333 333334443 33222222223477999999987 3 3499999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||+||
T Consensus 174 ~Dg~Ir 179 (691)
T KOG2048|consen 174 IDGVIR 179 (691)
T ss_pred cCceEE
Confidence 999886
No 110
>KOG0302|consensus
Probab=87.46 E-value=1.4 Score=34.67 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=47.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--------eeEEE------EEEcCCCCCceeEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--------IKLLQ------CYADPDIEENFYTCAWS 68 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--------~~~l~------~~~d~d~~e~~y~~aWs 68 (88)
.+-|+.||.++.|+|.. ..+||+.|.+ +|+|+++..... .+-|| .|.. .-..++=.+.|.
T Consensus 343 fk~Hk~pItsieW~p~e----~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH 417 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHE----DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWH 417 (440)
T ss_pred EEeccCCeeEEEecccc----CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheec
Confidence 46799999999999965 5678888877 699999875321 11111 1221 124445568999
Q ss_pred ecCCCCceEEEEecCCc
Q psy8253 69 MDLESGRPLLAVAGSRA 85 (88)
Q Consensus 69 ~d~~~~~plLa~aG~~G 85 (88)
..- .-+|++-+.+|
T Consensus 418 ~Qi---PG~lvsTa~dG 431 (440)
T KOG0302|consen 418 RQI---PGLLVSTAIDG 431 (440)
T ss_pred cCC---CCeEEEecccc
Confidence 771 12566666666
No 111
>KOG0282|consensus
Probab=87.26 E-value=1.4 Score=35.35 Aligned_cols=72 Identities=21% Similarity=0.402 Sum_probs=58.0
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
....|..++-+++||+ ...-|-++|=++ +.+++.+++ ++++.| ..+.-.||+..-.| + ..++.+|
T Consensus 253 tf~gH~k~Vrd~~~s~-----~g~~fLS~sfD~~lKlwDtETG---~~~~~f---~~~~~~~cvkf~pd--~-~n~fl~G 318 (503)
T KOG0282|consen 253 TFKGHRKPVRDASFNN-----CGTSFLSASFDRFLKLWDTETG---QVLSRF---HLDKVPTCVKFHPD--N-QNIFLVG 318 (503)
T ss_pred hhhcchhhhhhhhccc-----cCCeeeeeecceeeeeeccccc---eEEEEE---ecCCCceeeecCCC--C-CcEEEEe
Confidence 3456888888888887 345588999885 899999988 889999 46788899988777 3 5679999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.++.|+
T Consensus 319 ~sd~ki~ 325 (503)
T KOG0282|consen 319 GSDKKIR 325 (503)
T ss_pred cCCCcEE
Confidence 9999985
No 112
>KOG0640|consensus
Probab=87.19 E-value=3 Score=32.36 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=47.9
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
|+-+..|-|-.+ |-.+|.++ +++|++.+-+ ..+.+--|+.+.+.+.+|-.+.. ..|-++|+.||.|
T Consensus 218 ~vrsiSfHPsGe------fllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~t----~~lYvTaSkDG~I 285 (430)
T KOG0640|consen 218 PVRSISFHPSGE------FLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSST----GSLYVTASKDGAI 285 (430)
T ss_pred eeeeEeecCCCc------eEEEecCCCceeEEecccee--EeeecCcccccccceeEEEecCC----ccEEEEeccCCcE
Confidence 666777776443 78888886 8888877641 22333345568899999988754 4568999999998
Q ss_pred C
Q psy8253 88 R 88 (88)
Q Consensus 88 r 88 (88)
|
T Consensus 286 k 286 (430)
T KOG0640|consen 286 K 286 (430)
T ss_pred E
Confidence 6
No 113
>KOG1063|consensus
Probab=87.12 E-value=1.9 Score=36.17 Aligned_cols=73 Identities=23% Similarity=0.368 Sum_probs=50.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEE-cCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYA-DPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~-d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+.|.-.+--.+|+|- ...+++|+.+| +.+|+...+...+. .|. -+++..-+++|.|+.|. ..+|+|+
T Consensus 569 ~~HsLTVT~l~FSpd-----g~~LLsvsRDRt~sl~~~~~~~~~e~--~fa~~k~HtRIIWdcsW~pde----~~FaTaS 637 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPD-----GRYLLSVSRDRTVSLYEVQEDIKDEF--RFACLKAHTRIIWDCSWSPDE----KYFATAS 637 (764)
T ss_pred cccceEEEEEEECCC-----CcEEEEeecCceEEeeeeecccchhh--hhccccccceEEEEcccCccc----ceeEEec
Confidence 566777777888883 45688888886 99999866532111 121 34678889999999882 2388998
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|-.|+
T Consensus 638 RDK~Vk 643 (764)
T KOG1063|consen 638 RDKKVK 643 (764)
T ss_pred CCceEE
Confidence 887663
No 114
>KOG0286|consensus
Probab=87.06 E-value=5.6 Score=30.46 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=44.2
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
+..+-|..-|.+|+|.|-... |||...+. ...|++-.|. -|..|..+...-.+.+|+.|..
T Consensus 223 qtF~ghesDINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~---~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDA-----FATGSDDATCRLYDLRADQ---ELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred EeecccccccceEEEccCCCe-----eeecCCCceeEEEeecCCc---EEeeeccCcccCCceeEEEccc
Confidence 346778889999999996543 89888884 7889988883 4445544455666777777754
No 115
>KOG4283|consensus
Probab=86.75 E-value=2.5 Score=32.62 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|+..|-.+.++|++ .-+|-+-.=++ +.|++-.+- +..-.| ..++.+|+-|||... -.+.|+++|.
T Consensus 98 ~~Hky~iss~~WyP~D----tGmFtssSFDhtlKVWDtnTl---Q~a~~F---~me~~VYshamSp~a--~sHcLiA~gt 165 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPID----TGMFTSSSFDHTLKVWDTNTL---QEAVDF---KMEGKVYSHAMSPMA--MSHCLIAAGT 165 (397)
T ss_pred ccceeeeeeeEEeeec----CceeecccccceEEEeecccc---eeeEEe---ecCceeehhhcChhh--hcceEEEEec
Confidence 4577888889999986 45676655554 777776653 444444 568899999999873 3456666666
Q ss_pred Cc
Q psy8253 84 RA 85 (88)
Q Consensus 84 ~G 85 (88)
++
T Consensus 166 r~ 167 (397)
T KOG4283|consen 166 RD 167 (397)
T ss_pred CC
Confidence 55
No 116
>KOG0307|consensus
Probab=86.48 E-value=0.97 Score=39.19 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=53.5
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce-EEEE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP-LLAV 80 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p-lLa~ 80 (88)
+.|-|..-+-++.++|-+ +.++.++|++ ||.+...++. ++|-.+ +-...-++.+.||.- +| ++++
T Consensus 248 ~~~~H~~GilslsWc~~D----~~lllSsgkD~~ii~wN~~tg---Evl~~~--p~~~nW~fdv~w~pr----~P~~~A~ 314 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQD----PRLLLSSGKDNRIICWNPNTG---EVLGEL--PAQGNWCFDVQWCPR----NPSVMAA 314 (1049)
T ss_pred hhcccccceeeeccCCCC----chhhhcccCCCCeeEecCCCc---eEeeec--CCCCcceeeeeecCC----Ccchhhh
Confidence 446788888888888743 6788999988 5666666664 666555 235677899999976 45 7999
Q ss_pred ecCCcEe
Q psy8253 81 AGSRAVI 87 (88)
Q Consensus 81 aG~~G~I 87 (88)
+..+|.|
T Consensus 315 asfdgkI 321 (1049)
T KOG0307|consen 315 ASFDGKI 321 (1049)
T ss_pred heeccce
Confidence 9999987
No 117
>KOG0295|consensus
Probab=86.20 E-value=1.9 Score=33.64 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecC-----------CCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDL-----------ESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~-----------~~~~plLa~aG~~G~Ir 88 (88)
.+..+||+++++ +++++-.....-..+++ +++-.+=+++|.... .++.|.|.+|+.|++||
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 456788888887 57777766642122222 345556678887641 13458999999999997
No 118
>KOG2111|consensus
Probab=85.84 E-value=4.2 Score=31.26 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=38.6
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-Cee----------EEEEEEcC--------CCCCceeEEEE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIK----------LLQCYADP--------DIEENFYTCAW 67 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~----------~l~~~~d~--------d~~e~~y~~aW 67 (88)
...||.++|+|-. ..+|+.+.. -+||+.+.... +.+ +|-.|.|. =....-+-|+|
T Consensus 226 ~A~iy~iaFSp~~-----s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~f 300 (346)
T KOG2111|consen 226 RADIYCIAFSPNS-----SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAF 300 (346)
T ss_pred hheEEEEEeCCCc-----cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEe
Confidence 4689999999954 346666665 59999998753 233 55555543 12456677777
Q ss_pred eecC
Q psy8253 68 SMDL 71 (88)
Q Consensus 68 s~d~ 71 (88)
..++
T Consensus 301 g~~~ 304 (346)
T KOG2111|consen 301 GSET 304 (346)
T ss_pred cCCC
Confidence 7663
No 119
>KOG0313|consensus
Probab=85.50 E-value=4 Score=32.11 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=40.5
Q ss_pred CCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 25 PRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 25 ~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
..++|+-+.+ ++.+|+.-..++-.+-|+|. .+..-+-+|.|++. +... |+.|+.||.+|
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~--~~~~-~~S~S~D~t~k 371 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPT--NEFQ-LVSGSYDNTVK 371 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCC--CceE-EEEEecCCeEE
Confidence 4445555555 47777766655555566665 46668899999976 4444 99999999875
No 120
>KOG1407|consensus
Probab=84.76 E-value=6.7 Score=29.70 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=47.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
|+.+...--+.|| . ..+--|+|-|.+-|.|.+-+. ++.++++. -++.+-+|++.+++ |+ ++|+|+.|
T Consensus 144 ~~~~~e~ne~~w~--~--~nd~Fflt~GlG~v~ILsyps---Lkpv~si~--AH~snCicI~f~p~---Gr-yfA~GsAD 210 (313)
T KOG1407|consen 144 EQFKFEVNEISWN--N--SNDLFFLTNGLGCVEILSYPS---LKPVQSIK--AHPSNCICIEFDPD---GR-YFATGSAD 210 (313)
T ss_pred hcccceeeeeeec--C--CCCEEEEecCCceEEEEeccc---cccccccc--cCCcceEEEEECCC---Cc-eEeecccc
Confidence 3344444455555 2 245567888889999999995 56666664 35677777777766 44 49999988
Q ss_pred cEe
Q psy8253 85 AVI 87 (88)
Q Consensus 85 G~I 87 (88)
..+
T Consensus 211 Alv 213 (313)
T KOG1407|consen 211 ALV 213 (313)
T ss_pred cee
Confidence 765
No 121
>KOG4532|consensus
Probab=84.38 E-value=8.5 Score=29.37 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 24 QPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++...+.||.- +|..|+++.++ -.+++.|.- ++.+.-|+.+|+.. +-+.|++..+|.+
T Consensus 169 d~~~~~~Vgds~~Vf~y~id~~s-ey~~~~~~a-~t~D~gF~~S~s~~----~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 169 DPSWGSSVGDSRRVFRYAIDDES-EYIENIYEA-PTSDHGFYNSFSEN----DLQFAVVFQDGTC 227 (344)
T ss_pred CCceEEEecCCCcceEEEeCCcc-ceeeeeEec-ccCCCceeeeeccC----cceEEEEecCCcE
Confidence 45668888876 69999998875 366675554 56667777899975 3457888877753
No 122
>KOG1523|consensus
Probab=84.26 E-value=2.7 Score=32.39 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCe---eEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSI---KLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~---~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
++...-+|++.|. ++.||+=++-| |.||-.+..++- +.|+.= ..-.+-+|.|-.. +.|||+|+
T Consensus 99 iNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWVsKhikkP----irStv~sldWhpn----nVLlaaGs 165 (361)
T KOG1523|consen 99 INRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWVSKHIKKP----IRSTVTSLDWHPN----NVLLAAGS 165 (361)
T ss_pred eccceeeEeecCc-----CceEEeccCccEEEEEEEecccceehhhhhCCc----cccceeeeeccCC----cceecccc
Confidence 3444556666663 56699988887 888888876542 222211 2445889999765 56799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
-||..|
T Consensus 166 ~D~k~r 171 (361)
T KOG1523|consen 166 TDGKCR 171 (361)
T ss_pred cCccee
Confidence 888765
No 123
>KOG1036|consensus
Probab=83.99 E-value=8.1 Score=29.53 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=27.0
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
++=+|+.|+-+|+|-+. ..+|--.-.+.|..|++..+
T Consensus 49 ~~~~~~~plL~c~F~d~-----~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADE-----STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hheecCCceeeeeccCC-----ceEEEeccCceEEEEEecCC
Confidence 45578999999999882 33444444557999999886
No 124
>KOG2055|consensus
Probab=83.75 E-value=3.2 Score=33.40 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
+.||..+.|.|- ++.++|+.-=....++|++....-.++-+-|--+...=+.|.|+ .| .+.||.+|..|.|
T Consensus 257 ~fPi~~a~f~p~---G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS--hd----~~fia~~G~~G~I 327 (514)
T KOG2055|consen 257 KFPIQKAEFAPN---GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS--HD----SNFIAIAGNNGHI 327 (514)
T ss_pred cCccceeeecCC---CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec--CC----CCeEEEcccCceE
Confidence 579999999982 34455554444468999998764223333333222222333333 22 4589999999987
Q ss_pred C
Q psy8253 88 R 88 (88)
Q Consensus 88 r 88 (88)
.
T Consensus 328 ~ 328 (514)
T KOG2055|consen 328 H 328 (514)
T ss_pred E
Confidence 3
No 125
>KOG0640|consensus
Probab=83.73 E-value=5 Score=31.22 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=53.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCC----CC-----------eeEEEEEEcCCCCCceeEEEEe
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDG----GS-----------IKLLQCYADPDIEENFYTCAWS 68 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~----~~-----------~~~l~~~~d~d~~e~~y~~aWs 68 (88)
..||.|.-+.+|+| +..+|||=|.+ .|.|.+.+.. .+ --+|+.+- |+-+++.++.+-
T Consensus 109 t~HK~~cR~aafs~-----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FH 181 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSP-----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFH 181 (430)
T ss_pred eecccceeeeeeCC-----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeec
Confidence 57999999999998 35778988877 6999988731 11 12344322 678888888876
Q ss_pred ecCCCCceEEEEecCCcEeC
Q psy8253 69 MDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 69 ~d~~~~~plLa~aG~~G~Ir 88 (88)
.- ..+|++|+.|+.||
T Consensus 182 Pr----e~ILiS~srD~tvK 197 (430)
T KOG0640|consen 182 PR----ETILISGSRDNTVK 197 (430)
T ss_pred ch----hheEEeccCCCeEE
Confidence 54 47899999999886
No 126
>KOG0291|consensus
Probab=83.56 E-value=14 Score=31.65 Aligned_cols=70 Identities=11% Similarity=0.294 Sum_probs=50.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|-..+-+++++| +.|+.||-+.+ .|.||....+ --+..|. ++...+-.+.|+.. ++. |.+++.
T Consensus 347 QgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~Sg---fC~vTFt--eHts~Vt~v~f~~~---g~~-llssSL 412 (893)
T KOG0291|consen 347 QGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSG---FCFVTFT--EHTSGVTAVQFTAR---GNV-LLSSSL 412 (893)
T ss_pred cccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCc---eEEEEec--cCCCceEEEEEEec---CCE-EEEeec
Confidence 44666777888776 45778877766 5888887664 2233443 57888888999887 344 889999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 413 DGtVR 417 (893)
T KOG0291|consen 413 DGTVR 417 (893)
T ss_pred CCeEE
Confidence 99986
No 127
>KOG1538|consensus
Probab=83.49 E-value=5.5 Score=33.89 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=48.0
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.+.|+|+++|||-..++...+.|++-=++ ...|.+.-. +..+++.-+|--++=++=+ +|. .+.+||.++
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------~Igk~r~L~FdP~CisYf~-NGE-y~LiGGsdk 244 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------QIGKDRALNFDPCCISYFT-NGE-YILLGGSDK 244 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--------eecccccCCCCchhheecc-CCc-EEEEccCCC
Confidence 46799999999998888899999987664 677776542 2222445555556556553 343 477777777
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.+
T Consensus 245 ~L 246 (1081)
T KOG1538|consen 245 QL 246 (1081)
T ss_pred ce
Confidence 64
No 128
>KOG0316|consensus
Probab=83.33 E-value=4 Score=30.58 Aligned_cols=70 Identities=13% Similarity=0.306 Sum_probs=45.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.-|..++..|+||- ++.+++.-+=+ .+.+++|-... .+.+|.+.+ ..+.+-++ +. ..+.|++|+.
T Consensus 98 rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s-~ePiQilde--a~D~V~Si----~v--~~heIvaGS~ 163 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRS-FEPIQILDE--AKDGVSSI----DV--AEHEIVAGSV 163 (307)
T ss_pred ccccceeeEEEecC-----cceEEEeccccceeEEEEcccCC-CCccchhhh--hcCceeEE----Ee--cccEEEeecc
Confidence 46888999999984 46677777766 49999998764 355554421 22233332 31 2455888888
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.+|
T Consensus 164 DGtvR 168 (307)
T KOG0316|consen 164 DGTVR 168 (307)
T ss_pred CCcEE
Confidence 98875
No 129
>KOG0265|consensus
Probab=83.25 E-value=7.6 Score=29.78 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=47.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
-|+..|.++.|++ +....-+||.+ +|.+++..++ +.++.++ .+..-+.+|. -. .-|.+||++|..|
T Consensus 88 gHsgAVM~l~~~~-----d~s~i~S~gtDk~v~~wD~~tG---~~~rk~k--~h~~~vNs~~-p~--rrg~~lv~SgsdD 154 (338)
T KOG0265|consen 88 GHSGAVMELHGMR-----DGSHILSCGTDKTVRGWDAETG---KRIRKHK--GHTSFVNSLD-PS--RRGPQLVCSGSDD 154 (338)
T ss_pred cccceeEeeeecc-----CCCEEEEecCCceEEEEecccc---eeeehhc--cccceeeecC-cc--ccCCeEEEecCCC
Confidence 6888899999886 34567778877 6999999887 4444442 2333344444 11 1356888999989
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.+|
T Consensus 155 ~t~k 158 (338)
T KOG0265|consen 155 GTLK 158 (338)
T ss_pred ceEE
Confidence 9875
No 130
>KOG0649|consensus
Probab=82.94 E-value=14 Score=27.98 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=18.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYE 40 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~ 40 (88)
+.|..|+|.++|. +..+-++|.++|.=.+
T Consensus 59 qahdgpiy~~~f~-------d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH-------DDFLLSGGDGLVYGWE 87 (325)
T ss_pred cccCCCeeeeeee-------hhheeeccCceEEEee
Confidence 5688899999987 2334455555555444
No 131
>KOG1036|consensus
Probab=82.53 E-value=6.2 Score=30.16 Aligned_cols=66 Identities=12% Similarity=0.338 Sum_probs=52.0
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
..-|-+++|.| ..+.++|+.=.+.+.+|+.+.+ ++++.| .++..+-+|+..-+ .. +++||.+|.|
T Consensus 13 ~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~---~l~~~~---~~~~plL~c~F~d~----~~-~~~G~~dg~v 77 (323)
T KOG1036|consen 13 EDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPAN---SLKLKF---KHGAPLLDCAFADE----ST-IVTGGLDGQV 77 (323)
T ss_pred hhceeeEEEcC----cCCcEEEEeccCcEEEEeccch---hhhhhe---ecCCceeeeeccCC----ce-EEEeccCceE
Confidence 44577889884 3477888888999999999997 777777 56778899998753 34 8889999887
Q ss_pred C
Q psy8253 88 R 88 (88)
Q Consensus 88 r 88 (88)
|
T Consensus 78 r 78 (323)
T KOG1036|consen 78 R 78 (323)
T ss_pred E
Confidence 6
No 132
>KOG0285|consensus
Probab=82.31 E-value=10 Score=30.01 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=49.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..-|-.=+-+|+|.|+..| |||=+.+| +-|+++... +++-.- +.+-+.+-.++-|.- .|+|-++|
T Consensus 147 i~gHlgWVr~vavdP~n~w-----f~tgs~DrtikIwDlatg---~Lkltl--tGhi~~vr~vavS~r----HpYlFs~g 212 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEW-----FATGSADRTIKIWDLATG---QLKLTL--TGHIETVRGVAVSKR----HPYLFSAG 212 (460)
T ss_pred hhhccceEEEEeeCCCcee-----EEecCCCceeEEEEcccC---eEEEee--cchhheeeeeeeccc----CceEEEec
Confidence 3456667788999887655 99999997 889999886 222222 123444555666543 78999999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.++.||
T Consensus 213 edk~VK 218 (460)
T KOG0285|consen 213 EDKQVK 218 (460)
T ss_pred CCCeeE
Confidence 998875
No 133
>KOG0283|consensus
Probab=81.63 E-value=6.6 Score=33.00 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=51.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..=+-+|+|||-+ ++.|.+=.=+ ++.|+.++.. +|+-.+ |-.+-+-+++.++| |+- .++|..+
T Consensus 407 ~HndfVTcVaFnPvD----DryFiSGSLD~KvRiWsI~d~---~Vv~W~---Dl~~lITAvcy~Pd---Gk~-avIGt~~ 472 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVD----DRYFISGSLDGKVRLWSISDK---KVVDWN---DLRDLITAVCYSPD---GKG-AVIGTFN 472 (712)
T ss_pred ecCCeeEEEEecccC----CCcEeecccccceEEeecCcC---eeEeeh---hhhhhheeEEeccC---Cce-EEEEEec
Confidence 466678899999976 4556654433 6999999986 777777 67788999999888 333 7788888
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|..|
T Consensus 473 G~C~ 476 (712)
T KOG0283|consen 473 GYCR 476 (712)
T ss_pred cEEE
Confidence 8754
No 134
>KOG0308|consensus
Probab=81.36 E-value=10 Score=31.79 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=46.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.++.++|+.|-||-. -+|+.-|.+. +.+|+|-....++-|| .+.+++-.+-=+- +|.. |.+|+.|
T Consensus 169 G~k~siYSLA~N~t~-----t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~d---DGt~-~ls~sSD 234 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTG-----TIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVND---DGTR-LLSASSD 234 (735)
T ss_pred CCccceeeeecCCcc-----eEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcC---CCCe-EeecCCC
Confidence 577889998888744 3444444443 8899988875444444 3455565554332 4677 8899999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|+||
T Consensus 235 gtIr 238 (735)
T KOG0308|consen 235 GTIR 238 (735)
T ss_pred ceEE
Confidence 9997
No 135
>KOG1034|consensus
Probab=80.38 E-value=6.5 Score=30.56 Aligned_cols=74 Identities=14% Similarity=0.322 Sum_probs=56.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|+..|...+|.|-. +|++-++++++ |.+.....+.=+.++-.+ +.+.+++-++-|+.+ +. .|+++|.
T Consensus 132 ~ghG~sINeik~~p~~----~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHrdeVLSvD~~~~---gd-~i~ScGm 201 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDR----PQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHRDEVLSVDFSLD---GD-RIASCGM 201 (385)
T ss_pred eccCccchhhhcCCCC----CcEEEEecCCceEEEEeccCCeEEEEeccc--ccccCcEEEEEEcCC---CC-eeeccCC
Confidence 4688899999998843 78899999985 899999887333344444 357888999999988 34 5999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|-.|+
T Consensus 202 Dhslk 206 (385)
T KOG1034|consen 202 DHSLK 206 (385)
T ss_pred cceEE
Confidence 87764
No 136
>KOG0771|consensus
Probab=80.31 E-value=4.1 Score=32.01 Aligned_cols=59 Identities=19% Similarity=0.377 Sum_probs=48.4
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE 72 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~ 72 (88)
+|...|-+..|+| +....|++|++...|++..+. ..++.=.|.+.+|.|-.|-.+.|..
T Consensus 184 ~~~~eV~DL~FS~-----dgk~lasig~d~~~VW~~~~g---~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 184 AHHAEVKDLDFSP-----DGKFLASIGADSARVWSVNTG---AALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred hhcCccccceeCC-----CCcEEEEecCCceEEEEeccC---chhhhcCCcccchhhhhceecccCC
Confidence 5677888888887 457899999999999999987 5556666678899999999999854
No 137
>KOG0389|consensus
Probab=80.11 E-value=0.4 Score=40.76 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS 46 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~ 46 (88)
||++.||||.+....+-.==||..+ |+||++-..+.
T Consensus 853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 7899999999864555555678876 99999988754
No 138
>KOG0321|consensus
Probab=79.80 E-value=4.8 Score=33.60 Aligned_cols=72 Identities=7% Similarity=0.133 Sum_probs=51.1
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
-|...+|++++-| ++.+++-+-|+-.+.++++...+ +.=.+.+. .+.-++=+.|...+ +..+ +|+||.||
T Consensus 98 aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~-l~G~~~~~--GH~~SvkS~cf~~~--n~~v-F~tGgRDg 167 (720)
T KOG0321|consen 98 AHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSR-LVGGRLNL--GHTGSVKSECFMPT--NPAV-FCTGGRDG 167 (720)
T ss_pred cccceeEeeccCC----CceeEEEccCCceeeeeeeccce-eecceeec--ccccccchhhhccC--CCcc-eeeccCCC
Confidence 4777788888776 46777777777789999999872 22222343 46667777777766 4444 99999999
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.|
T Consensus 168 ~i 169 (720)
T KOG0321|consen 168 EI 169 (720)
T ss_pred cE
Confidence 77
No 139
>KOG1517|consensus
Probab=79.68 E-value=3.6 Score=36.39 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=42.2
Q ss_pred EEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEE--EEeecCCCCceEEEEecCCcEeC
Q psy8253 12 FGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTC--AWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 12 y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~--aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
--++|.||. +++.|.=+..+|.|++-..+ +.|..|.. ..-.++= .=....+....||.+|+.||+||
T Consensus 1068 k~~~~hpf~----p~i~~ad~r~~i~vwd~e~~---~~l~~F~n---~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1068 KTLKFHPFE----PQIAAADDRERIRVWDWEKG---RLLNGFDN---GAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred ceeeecCCC----ceeEEcCCcceEEEEecccC---ceeccccC---CCCCCCccceeeeecccchhheeeeccCceEE
Confidence 346677765 45555555789999999987 67887833 2211110 00111223467899999999987
No 140
>KOG4283|consensus
Probab=79.51 E-value=5.8 Score=30.62 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=42.4
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCC--eEEEEEcCCCCCee-EEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSN--RVSIYECPDGGSIK-LLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~--~v~Vy~~~~~~~~~-~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
-+|.-+.+|... ..-+.++|.. .|.+|++..+ .+. .|+ .+..++-+|.||.. + .=+|++||-||.
T Consensus 145 ~VYshamSp~a~---sHcLiA~gtr~~~VrLCDi~SG-s~sH~Ls-----GHr~~vlaV~Wsp~--~-e~vLatgsaDg~ 212 (397)
T KOG4283|consen 145 KVYSHAMSPMAM---SHCLIAAGTRDVQVRLCDIASG-SFSHTLS-----GHRDGVLAVEWSPS--S-EWVLATGSADGA 212 (397)
T ss_pred eeehhhcChhhh---cceEEEEecCCCcEEEEeccCC-cceeeec-----cccCceEEEEeccC--c-eeEEEecCCCce
Confidence 355555555442 3445555655 4666666554 222 222 46778999999976 3 356999999999
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
||
T Consensus 213 ir 214 (397)
T KOG4283|consen 213 IR 214 (397)
T ss_pred EE
Confidence 86
No 141
>KOG1524|consensus
Probab=78.87 E-value=5.5 Score=32.95 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=33.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
-|..||-+|+|||- ..||+=+ -+ +.|+.. -..-+++.++||.| |.+ ++.|...|
T Consensus 225 ~~ey~ITSva~npd------~~~~v~S-~n--t~R~~~-------------p~~GSifnlsWS~D---GTQ-~a~gt~~G 278 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE------KDYLLWS-YN--TARFSS-------------PRVGSIFNLSWSAD---GTQ-ATCGTSTG 278 (737)
T ss_pred hhccceeeeeeccc------cceeeee-ee--eeeecC-------------CCccceEEEEEcCC---Cce-eeccccCc
Confidence 35567888888884 2355432 22 122221 14567899999998 556 66776666
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.+
T Consensus 279 ~v 280 (737)
T KOG1524|consen 279 QL 280 (737)
T ss_pred eE
Confidence 54
No 142
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.62 E-value=13 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEeCCCeEEEEEcCCCCCeeEEEEEE
Q psy8253 28 FATVGSNRVSIYECPDGGSIKLLQCYA 54 (88)
Q Consensus 28 fAtvG~~~v~Vy~~~~~~~~~~l~~~~ 54 (88)
+|.-.++.|.+|++..++.+++++...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~ 32 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD 32 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe
Confidence 333456679999997666677777663
No 143
>KOG3621|consensus
Probab=78.40 E-value=4 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=36.7
Q ss_pred CEEEEeCCCeEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 26 RIFATVGSNRVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 26 ~~fAtvG~~~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
-+.|.+-+.+|.||++...++ .+.+..+ |..+...+-+++|+.+. .. |-+|-..|+|
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~-d~~~~~rVTal~Ws~~~---~k-~ysGD~~Gkv 148 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPC-DKSHKCRVTALEWSKNG---MK-LYSGDSQGKV 148 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccc-cccCCceEEEEEecccc---cE-EeecCCCceE
Confidence 345566667899999998654 3333333 33458999999999983 22 4444444443
No 144
>KOG0286|consensus
Probab=78.36 E-value=18 Score=27.74 Aligned_cols=72 Identities=14% Similarity=0.304 Sum_probs=56.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..-+.++.+.|- +.+.|++.|-+. ..++++-.. .-.|.|. .++-++.+++.=++ |.. +|+|+
T Consensus 182 f~GH~gDV~slsl~p~----~~ntFvSg~cD~~aklWD~R~~---~c~qtF~--ghesDINsv~ffP~---G~a-fatGS 248 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS----DGNTFVSGGCDKSAKLWDVRSG---QCVQTFE--GHESDINSVRFFPS---GDA-FATGS 248 (343)
T ss_pred ecCCcccEEEEecCCC----CCCeEEecccccceeeeeccCc---ceeEeec--ccccccceEEEccC---CCe-eeecC
Confidence 4567888999998886 578899999885 888888775 6778884 57788889988765 556 88888
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||..|
T Consensus 249 DD~tcR 254 (343)
T KOG0286|consen 249 DDATCR 254 (343)
T ss_pred CCceeE
Confidence 888765
No 145
>KOG0294|consensus
Probab=77.94 E-value=9.7 Score=29.43 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=41.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..+|-+||-+ .+.+|+-|++ +|+||+++....+..|- ++...+.+|...... +-.. |.+|..
T Consensus 40 ~aH~~sitavAVs-------~~~~aSGssDetI~IYDm~k~~qlg~ll-----~HagsitaL~F~~~~-S~sh-LlS~sd 105 (362)
T KOG0294|consen 40 SAHAGSITALAVS-------GPYVASGSSDETIHIYDMRKRKQLGILL-----SHAGSITALKFYPPL-SKSH-LLSGSD 105 (362)
T ss_pred cccccceeEEEec-------ceeEeccCCCCcEEEEeccchhhhccee-----ccccceEEEEecCCc-chhh-eeeecC
Confidence 4455555555543 3445555555 79999999874333332 246667777766552 2234 677777
Q ss_pred CcEe
Q psy8253 84 RAVI 87 (88)
Q Consensus 84 ~G~I 87 (88)
||.|
T Consensus 106 DG~i 109 (362)
T KOG0294|consen 106 DGHI 109 (362)
T ss_pred CCcE
Confidence 7776
No 146
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=77.67 E-value=14 Score=30.30 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
.++++-+|++||- ++.++.-|-.+.|.+|+...+-. ...+... --..++|-.+ ..++++|+.+|.
T Consensus 258 L~s~v~~ca~sp~----E~kLvlGC~DgSiiLyD~~~~~t-~~~ka~~------~P~~iaWHp~----gai~~V~s~qGe 322 (545)
T PF11768_consen 258 LPSQVICCARSPS----EDKLVLGCEDGSIILYDTTRGVT-LLAKAEF------IPTLIAWHPD----GAIFVVGSEQGE 322 (545)
T ss_pred cCCcceEEecCcc----cceEEEEecCCeEEEEEcCCCee-eeeeecc------cceEEEEcCC----CcEEEEEcCCce
Confidence 4567788888883 46677778888999999877522 2223221 1345899877 456999999987
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
|
T Consensus 323 l 323 (545)
T PF11768_consen 323 L 323 (545)
T ss_pred E
Confidence 6
No 147
>KOG0650|consensus
Probab=76.61 E-value=4.8 Score=33.49 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=39.6
Q ss_pred CCCEEEEeCCC-eEEEEEcC------CCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 24 QPRIFATVGSN-RVSIYECP------DGG---SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 24 ~~~~fAtvG~~-~v~Vy~~~------~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.-++||++..+ -++||--. ++. |++.|+.-.- ..+-.+-.+.|-.. .|+|-+||.+|.||
T Consensus 661 ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~-~~~~gVLd~~wHP~----qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 661 RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK-TNDLGVLDTIWHPR----QPWLFSAGADGTIR 730 (733)
T ss_pred ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee-ecccceEeecccCC----CceEEecCCCceEE
Confidence 46789999985 46666422 221 2444442211 13445778889876 79999999999997
No 148
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=75.19 E-value=23 Score=26.70 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=42.3
Q ss_pred CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEE-EcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNRVSIYECPDGGSIKLLQCY-ADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~-~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+..++|++=.+.|.|-.-..+=. .++.+. .-+|+.-.---++||+| ..+||.|-..|.|+
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD----~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPD----CTLLAYAESTGTIR 68 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCC----CcEEEEEcCCCeEE
Confidence 456788888777777766655411 222222 23467777888999988 56899999999985
No 149
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.01 E-value=28 Score=25.08 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 14 AQFNHLLKDDQPRIFATV-GSNRVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 14 v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++|+| +...++++. +.+.|.|++..+++ .+++++..... +.--.++++.| |+-|+++...++.|
T Consensus 233 i~~~p----dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~d---g~~l~va~~~~~~v 298 (330)
T PRK11028 233 IHITP----DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHS---GKYLIAAGQKSHHI 298 (330)
T ss_pred EEECC----CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCC---CCEEEEEEccCCcE
Confidence 55555 223455543 35689999998775 46666655322 11122344443 56655555556654
No 150
>PRK01742 tolB translocation protein TolB; Provisional
Probab=74.54 E-value=21 Score=27.30 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=35.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeC--CC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVG--SN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.|+.++.+.+|+|- .+.+|.++ ++ .|.++++... ..+.+..+. ......+|+.| |+.|+.+.
T Consensus 201 ~~~~~v~~p~wSPD-----G~~la~~s~~~~~~~i~i~dl~tg-~~~~l~~~~-----g~~~~~~wSPD---G~~La~~~ 266 (429)
T PRK01742 201 RSSQPLMSPAWSPD-----GSKLAYVSFENKKSQLVVHDLRSG-ARKVVASFR-----GHNGAPAFSPD---GSRLAFAS 266 (429)
T ss_pred cCCCccccceEcCC-----CCEEEEEEecCCCcEEEEEeCCCC-ceEEEecCC-----CccCceeECCC---CCEEEEEE
Confidence 45667788888873 23345543 32 4667766443 334454432 12236899987 45544444
Q ss_pred cCCc
Q psy8253 82 GSRA 85 (88)
Q Consensus 82 G~~G 85 (88)
..+|
T Consensus 267 ~~~g 270 (429)
T PRK01742 267 SKDG 270 (429)
T ss_pred ecCC
Confidence 4455
No 151
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=74.26 E-value=37 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCeEEEEEcCCCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 24 QPRIFATVGSNRVSIYECPDGG---SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
...+..+-.++.|.+++..++. .++++-++ +..+-+.+||+|. .+||++-.+|.|
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----d~GI~a~~WSPD~----Ella~vT~~~~l 144 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSV-----DSGILAASWSPDE----ELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----cCcEEEEEECCCc----CEEEEEeCCCEE
Confidence 4555555656666666433322 36777666 6679999999993 345555444443
No 152
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.95 E-value=24 Score=23.79 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=47.7
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
++++-+++=-|+.+....+++-+-...++.+|+...+.. +.. .|-.+.+.++.+..-.....||+.+||.
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d--~Fy----ke~~DGvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD--LFY----KEVPDGVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch--hhh----hhCccceeEEEEEecCCCCCcEEEECce
Confidence 345555555566555567777777778899999988632 221 1456788889888775556897777774
No 153
>KOG0639|consensus
Probab=73.92 E-value=8.2 Score=31.78 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=46.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|...+-+++|.++-.| |+.+|++. +-+||.+-+- .+.|+= +.-++-+|-=|. ++.+|++|+.
T Consensus 630 hlheScVLSlKFa~cGkw-----fvStGkDnlLnawrtPyGa--siFqsk----E~SsVlsCDIS~----ddkyIVTGSG 694 (705)
T KOG0639|consen 630 HLHESCVLSLKFAYCGKW-----FVSTGKDNLLNAWRTPYGA--SIFQSK----ESSSVLSCDISF----DDKYIVTGSG 694 (705)
T ss_pred cccccEEEEEEecccCce-----eeecCchhhhhhccCcccc--ceeecc----ccCcceeeeecc----CceEEEecCC
Confidence 456778999999998877 99999985 7788887752 444432 344555555444 4788999876
Q ss_pred C
Q psy8253 84 R 84 (88)
Q Consensus 84 ~ 84 (88)
+
T Consensus 695 d 695 (705)
T KOG0639|consen 695 D 695 (705)
T ss_pred C
Confidence 5
No 154
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=73.58 E-value=8.7 Score=31.37 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 36 VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 36 v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
-+||+|..+ .++-+...+-+ -+...-+|||+.+ .-+|+.|+.||.|.
T Consensus 238 ~ciYE~~r~-klqrvsvtsip-L~s~v~~ca~sp~----E~kLvlGC~DgSii 284 (545)
T PF11768_consen 238 SCIYECSRN-KLQRVSVTSIP-LPSQVICCARSPS----EDKLVLGCEDGSII 284 (545)
T ss_pred EEEEEeecC-ceeEEEEEEEe-cCCcceEEecCcc----cceEEEEecCCeEE
Confidence 678888875 35544444332 5667889999987 34699999999873
No 155
>KOG0296|consensus
Probab=73.07 E-value=35 Score=26.86 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=53.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.|..++-.++|-+ +.-+|+.|.++.|..+....+ .++..|. .+.+.+++.+-+.+ ..+|+++|.++
T Consensus 325 ~he~~V~~l~w~~-----t~~l~t~c~~g~v~~wDaRtG---~l~~~y~--GH~~~Il~f~ls~~----~~~vvT~s~D~ 390 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-----TDYLLTACANGKVRQWDARTG---QLKFTYT--GHQMGILDFALSPQ----KRLVVTVSDDN 390 (399)
T ss_pred cCCCceEEEEEcC-----cchheeeccCceEEeeecccc---ceEEEEe--cCchheeEEEEcCC----CcEEEEecCCC
Confidence 3455666666655 467899999999999999887 7778886 58999999998876 45688888887
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
..
T Consensus 391 ~a 392 (399)
T KOG0296|consen 391 TA 392 (399)
T ss_pred eE
Confidence 64
No 156
>KOG0270|consensus
Probab=72.65 E-value=34 Score=27.47 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=43.8
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCC--CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGS--NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~--~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
..+.|+.++-.++|+|+.+. +-.-|+ .+|.+++|..-++.....++ +.++=.++|..- +... ..+
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~-----~LLsGs~D~~V~l~D~R~~~~s~~~wk~-----~g~VEkv~w~~~--se~~-f~~ 347 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPS-----VLLSGSYDGTVALKDCRDPSNSGKEWKF-----DGEVEKVAWDPH--SENS-FFV 347 (463)
T ss_pred ehhhcCCceeEEEecCCCce-----EEEeccccceEEeeeccCccccCceEEe-----ccceEEEEecCC--Ccee-EEE
Confidence 34679999999999998743 444454 47999998853222333333 223445777654 2222 455
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
+-.+|++|
T Consensus 348 ~tddG~v~ 355 (463)
T KOG0270|consen 348 STDDGTVY 355 (463)
T ss_pred ecCCceEE
Confidence 55666654
No 157
>KOG0285|consensus
Probab=71.11 E-value=8.4 Score=30.42 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=48.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|...+-+|+|++-. +-+| .+|.+ .|..|++..+ ++|+.|. .+--.+||++=-.. .-+|++||.|
T Consensus 191 Ghi~~vr~vavS~rH----pYlF-s~gedk~VKCwDLe~n---kvIR~Yh--GHlS~V~~L~lhPT----ldvl~t~grD 256 (460)
T KOG0285|consen 191 GHIETVRGVAVSKRH----PYLF-SAGEDKQVKCWDLEYN---KVIRHYH--GHLSGVYCLDLHPT----LDVLVTGGRD 256 (460)
T ss_pred chhheeeeeeecccC----ceEE-EecCCCeeEEEechhh---hhHHHhc--cccceeEEEecccc----ceeEEecCCc
Confidence 466778899998743 3344 45555 6999999998 8898885 36677888763321 2358999998
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
.+||
T Consensus 257 st~R 260 (460)
T KOG0285|consen 257 STIR 260 (460)
T ss_pred ceEE
Confidence 8876
No 158
>PRK05137 tolB translocation protein TolB; Provisional
Probab=70.91 E-value=39 Score=25.78 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=36.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEe----CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATV----GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtv----G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.|..++...+|+|- .+.+|.+ |...|.++++... ..+.|.. ........+|+.| |+.++.+.
T Consensus 199 ~~~~~v~~p~wSpD-----G~~lay~s~~~g~~~i~~~dl~~g-~~~~l~~-----~~g~~~~~~~SPD---G~~la~~~ 264 (435)
T PRK05137 199 DGSSLVLTPRFSPN-----RQEITYMSYANGRPRVYLLDLETG-QRELVGN-----FPGMTFAPRFSPD---GRKVVMSL 264 (435)
T ss_pred cCCCCeEeeEECCC-----CCEEEEEEecCCCCEEEEEECCCC-cEEEeec-----CCCcccCcEECCC---CCEEEEEE
Confidence 45567788888772 2334444 2345777776543 2333322 2335567889877 55655554
Q ss_pred cCCc
Q psy8253 82 GSRA 85 (88)
Q Consensus 82 G~~G 85 (88)
..+|
T Consensus 265 ~~~g 268 (435)
T PRK05137 265 SQGG 268 (435)
T ss_pred ecCC
Confidence 4443
No 159
>KOG0650|consensus
Probab=70.58 E-value=35 Score=28.66 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
|..-+-++.-.|- ...+|+=|.+ .|.||++.+. .-|+.+. .++.+-++||+.. ...++||+|=.
T Consensus 399 Htg~Vr~iSvdp~-----G~wlasGsdDGtvriWEi~Tg---Rcvr~~~---~d~~I~~vaw~P~--~~~~vLAvA~~ 463 (733)
T KOG0650|consen 399 HTGLVRSISVDPS-----GEWLASGSDDGTVRIWEIATG---RCVRTVQ---FDSEIRSVAWNPL--SDLCVLAVAVG 463 (733)
T ss_pred cCCeEEEEEecCC-----cceeeecCCCCcEEEEEeecc---eEEEEEe---ecceeEEEEecCC--CCceeEEEEec
Confidence 4444444444442 3346666655 4899999887 3344442 3558999999988 45788888743
No 160
>KOG4640|consensus
Probab=69.84 E-value=22 Score=29.66 Aligned_cols=63 Identities=27% Similarity=0.277 Sum_probs=44.0
Q ss_pred eEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCcee-EEEEeecCCCCceEEEEecCCcEeC
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFY-TCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y-~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++=+.+|| .-+++|+.-.. .+.++|+.- +=|..+ |-++|+.- +.+|-.| | .+||+|=.||.|+
T Consensus 23 i~~~ewnP-----~~dLiA~~t~~gelli~R~n~----qRlwti--p~p~~~v~~sL~W~~D---G-kllaVg~kdG~I~ 87 (665)
T KOG4640|consen 23 IKRIEWNP-----KMDLIATRTEKGELLIHRLNW----QRLWTI--PIPGENVTASLCWRPD---G-KLLAVGFKDGTIR 87 (665)
T ss_pred eEEEEEcC-----ccchhheeccCCcEEEEEecc----ceeEec--cCCCCccceeeeecCC---C-CEEEEEecCCeEE
Confidence 44445555 35678887766 499999984 334444 23677777 8999988 3 4599999999985
No 161
>KOG0282|consensus
Probab=69.49 E-value=4.7 Score=32.46 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=52.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..-+-++.|.|. ...+|+..|-+ .|.|+++-.++ ..|+.|. .+.+.+-+++|+.+ |.. +.++|.
T Consensus 211 ~gH~kgvsai~~fp~----~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~--gH~k~Vrd~~~s~~---g~~-fLS~sf 278 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPK----KGHLLLSGGMDGLVKLWNVYDDR--RCLRTFK--GHRKPVRDASFNNC---GTS-FLSASF 278 (503)
T ss_pred cCCccccchhhhccc----eeeEEEecCCCceEEEEEEecCc--ceehhhh--cchhhhhhhhcccc---CCe-eeeeec
Confidence 345554455555542 46689999887 69999998865 7788887 48899999999988 445 677888
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|+.||
T Consensus 279 D~~lK 283 (503)
T KOG0282|consen 279 DRFLK 283 (503)
T ss_pred ceeee
Confidence 88775
No 162
>KOG2106|consensus
Probab=69.10 E-value=59 Score=26.87 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=35.8
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
-++.++|-|-. +.+..|+|+.++..+....++=.+-.-.|.-.++ .-+-|++..++
T Consensus 202 ~v~~a~FHPtd----~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~en 257 (626)
T KOG2106|consen 202 VVFLATFHPTD----PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLEN 257 (626)
T ss_pred eEEEEEeccCC----CcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCC
Confidence 46889998855 6789999999999997666521122222322233 55666666654
No 163
>KOG2110|consensus
Probab=68.95 E-value=44 Score=26.28 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.+.|.||....-.++..|. -++..+=++|.+.+ -.|||+|+.+|.|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~-----aH~~~lAalafs~~----G~llATASeKGTV 197 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN-----AHKGPLAALAFSPD----GTLLATASEKGTV 197 (391)
T ss_pred CceEEEEEcccceeeeEEE-----ecCCceeEEEECCC----CCEEEEeccCceE
Confidence 4568888887655555555 25777899999877 3579999999986
No 164
>KOG4227|consensus
Probab=68.51 E-value=62 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=15.9
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
....||++-+-.. + -.||+++...|
T Consensus 193 ~~~~F~t~~F~P~--~-P~Li~~~~~~~ 217 (609)
T KOG4227|consen 193 SGKNFYTAEFHPE--T-PALILVNSETG 217 (609)
T ss_pred CCccceeeeecCC--C-ceeEEeccccC
Confidence 4677888877654 3 24577766544
No 165
>KOG0275|consensus
Probab=68.10 E-value=5.4 Score=31.24 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=48.5
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCC----CCCceeEEEEeecCCCCceE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPD----IEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d----~~e~~y~~aWs~d~~~~~pl 77 (88)
||-..+..+-+..|+| +.|.+++-+-+ .+.|+....+.=-+=| .|.-.| .++.+-|+.+|.| ..+
T Consensus 208 IKFg~KSh~EcA~FSP-----DgqyLvsgSvDGFiEVWny~~GKlrKDL-kYQAqd~fMMmd~aVlci~FSRD----sEM 277 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP-----DGQYLVSGSVDGFIEVWNYTTGKLRKDL-KYQAQDNFMMMDDAVLCISFSRD----SEM 277 (508)
T ss_pred eecccccchhheeeCC-----CCceEeeccccceeeeehhccchhhhhh-hhhhhcceeecccceEEEeeccc----HHH
Confidence 4445556666777777 34555555444 5888887765211112 222112 4788999999998 457
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
||+|..||.||
T Consensus 278 lAsGsqDGkIK 288 (508)
T KOG0275|consen 278 LASGSQDGKIK 288 (508)
T ss_pred hhccCcCCcEE
Confidence 99999999986
No 166
>KOG0313|consensus
Probab=67.99 E-value=19 Score=28.48 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=48.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.|+.=+-+|+++|- +..+|+.+.-+ .+.+.++-... |+-.| ..+++.++++.|..- -+|++||.
T Consensus 343 gH~nwVssvkwsp~----~~~~~~S~S~D~t~klWDvRS~k~plydI-----~~h~DKvl~vdW~~~-----~~IvSGGa 408 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPT----NEFQLVSGSYDNTVKLWDVRSTKAPLYDI-----AGHNDKVLSVDWNEG-----GLIVSGGA 408 (423)
T ss_pred cchhhhhheecCCC----CceEEEEEecCCeEEEEEeccCCCcceee-----ccCCceEEEEeccCC-----ceEEeccC
Confidence 45555667777774 36678887766 58888887643 43222 246888999999854 46999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
|..||
T Consensus 409 D~~l~ 413 (423)
T KOG0313|consen 409 DNKLR 413 (423)
T ss_pred cceEE
Confidence 98875
No 167
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=67.96 E-value=9.5 Score=31.45 Aligned_cols=24 Identities=29% Similarity=0.702 Sum_probs=20.1
Q ss_pred eeEEEEEEcC--CCCCceeEEEEeec
Q psy8253 47 IKLLQCYADP--DIEENFYTCAWSMD 70 (88)
Q Consensus 47 ~~~l~~~~d~--d~~e~~y~~aWs~d 70 (88)
++||+.+.|. .+.|.+|.||||-+
T Consensus 470 iQIIKGW~d~~G~t~E~VyDVA~S~~ 495 (592)
T PF12228_consen 470 IQIIKGWVDADGETHEKVYDVAWSDG 495 (592)
T ss_pred EEEEEEeEcCCCceeeEEEEEEecCC
Confidence 7899999885 46899999999854
No 168
>KOG2919|consensus
Probab=67.19 E-value=5.4 Score=31.06 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG 45 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~ 45 (88)
..+...+.+|++||+. |+.||+.|.|+.-|.=..++
T Consensus 337 ~~~sd~vNgvslnP~m-----pilatssGqr~f~~~~dD~g 372 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIM-----PILATSSGQRIFKYPKDDNG 372 (406)
T ss_pred ccccccccceecCccc-----ceeeeccCceeecCCCcccc
Confidence 4466678899999984 67999999997666555333
No 169
>KOG0292|consensus
Probab=65.06 E-value=24 Score=31.00 Aligned_cols=36 Identities=17% Similarity=0.481 Sum_probs=28.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG 44 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~ 44 (88)
.++|..|+-|+.|-| ..|+|.+-|.+. |.|+.....
T Consensus 47 FdeHdGpVRgv~FH~-----~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHP-----TQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhccCCccceeeecC-----CCCeEEecCCccEEEEEecccc
Confidence 478999999999987 457898888874 778776665
No 170
>KOG4532|consensus
Probab=65.01 E-value=24 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=43.6
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEc
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYAD 55 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d 55 (88)
+.+.+|+..+-.|+|.|+.. -+-+|-+=+-.+++|+++-...+++++.-..|
T Consensus 244 strp~hnGa~R~c~Fsl~g~--lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGL--LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred ccCCCCCCceEEEEecCCCc--ceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 34678999999999999764 47889999999999999998888888876654
No 171
>KOG0292|consensus
Probab=64.96 E-value=26 Score=30.82 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=43.2
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
++.|.|..-+.-++|-| +-|++.+-|.+| |.++|+....--++=-.+ .+-.++-+|-.-. .+-||.+
T Consensus 200 ~VLEGHDRGVNwaAfhp-----TlpliVSG~DDRqVKlWrmnetKaWEvDtcr---gH~nnVssvlfhp----~q~lIlS 267 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHP-----TLPLIVSGADDRQVKLWRMNETKAWEVDTCR---GHYNNVSSVLFHP----HQDLILS 267 (1202)
T ss_pred eeecccccccceEEecC-----CcceEEecCCcceeeEEEeccccceeehhhh---cccCCcceEEecC----ccceeEe
Confidence 46688888888888877 346677777776 888888875211110000 1122222222111 1347888
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
.|+|+.||
T Consensus 268 nsEDksir 275 (1202)
T KOG0292|consen 268 NSEDKSIR 275 (1202)
T ss_pred cCCCccEE
Confidence 88888876
No 172
>KOG0299|consensus
Probab=64.45 E-value=31 Score=27.74 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=36.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEc-------CCCCCceeEEE
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYAD-------PDIEENFYTCA 66 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d-------~d~~e~~y~~a 66 (88)
.|...+..++-+| +..+|||-|.++ |+|+.+.+...++.+...++ .+...++|+++
T Consensus 200 ~h~keil~~avS~-----Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 200 GHVKEILTLAVSS-----DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS 263 (479)
T ss_pred cccceeEEEEEcC-----CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee
Confidence 5667777777665 467899999885 77999988755555432222 13455677665
No 173
>KOG0300|consensus
Probab=64.41 E-value=36 Score=26.73 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=52.1
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..+.|+.-||.|+- + ...++.+|.+.++ ..|+.++.. +-|-.|. .+.-++.+++.... ..||++|
T Consensus 143 e~~GHkDGiW~Vaa----~-~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~--GH~GSVNsikfh~s----~~L~lTa 208 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAA----D-STQPICGTASADHTARIWSLESG---ACLATYT--GHTGSVNSIKFHNS----GLLLLTA 208 (481)
T ss_pred hhcccccceeeehh----h-cCCcceeecccccceeEEeeccc---cceeeec--ccccceeeEEeccc----cceEEEc
Confidence 45778888888763 2 3567999999997 889998886 5566664 47888999998764 4567788
Q ss_pred cCCcE
Q psy8253 82 GSRAV 86 (88)
Q Consensus 82 G~~G~ 86 (88)
+.|+.
T Consensus 209 SGD~t 213 (481)
T KOG0300|consen 209 SGDET 213 (481)
T ss_pred cCCcc
Confidence 77764
No 174
>KOG4578|consensus
Probab=63.21 E-value=11 Score=29.51 Aligned_cols=43 Identities=35% Similarity=0.759 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 32 GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 32 G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
|..+|.|=+|.++|-.+.+|.|.- .- -+||.+.++|.|++=++
T Consensus 225 g~~~i~IPeCap~glYk~VQCy~s---T~----YCWCV~edTGrpipGTS 267 (421)
T KOG4578|consen 225 GDARIVIPECAPGGLYKPVQCYDS---TG----YCWCVLEDTGRPIPGTS 267 (421)
T ss_pred CCceEEecccCCCCcccceeeecc---Cc----eEEEEeecCCCccCCcc
Confidence 556899999999987888999932 22 57999988999865443
No 175
>KOG0643|consensus
Probab=62.79 E-value=67 Score=24.55 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=43.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC------eEEEEEcCCCC----CeeEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN------RVSIYECPDGG----SIKLLQCYADPDIEENFYTCAWSMDLESGR 75 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~------~v~Vy~~~~~~----~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~ 75 (88)
+.+.++..|.|++- ..+++.+-.+ .|.++++..+. .-+.+..+. -++...-..-|... .
T Consensus 91 k~~~~Vk~~~F~~~-----gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~Wg~l----~ 159 (327)
T KOG0643|consen 91 KTNSPVKRVDFSFG-----GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALWGPL----G 159 (327)
T ss_pred ecCCeeEEEeeccC-----CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeeeeccc----C
Confidence 45667778888762 2334443333 38899988543 122222222 23456677788876 3
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
..|++|.++|.|.
T Consensus 160 ~~ii~Ghe~G~is 172 (327)
T KOG0643|consen 160 ETIIAGHEDGSIS 172 (327)
T ss_pred CEEEEecCCCcEE
Confidence 4599999999874
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=62.73 E-value=46 Score=25.41 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
++...||.+..++. ++ +... .........+|+.| |..++.++..+|
T Consensus 269 ~g~~~Iy~~d~~~~-~~-~~lt--~~~~~~~~~~wSpD---G~~i~f~s~~~g 314 (429)
T PRK01742 269 DGVLNIYVMGANGG-TP-SQLT--SGAGNNTEPSWSPD---GQSILFTSDRSG 314 (429)
T ss_pred CCcEEEEEEECCCC-Ce-Eeec--cCCCCcCCEEECCC---CCEEEEEECCCC
Confidence 34466776654432 12 2221 23445677899987 445444444444
No 177
>KOG0274|consensus
Probab=62.24 E-value=42 Score=27.17 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=50.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
..|..+|.++..+ .+-+|+..-...|.|++..+. +.|+... .+...+|++ ..+ +...+..|+.|
T Consensus 328 ~~h~~~V~~v~~~------~~~lvsgs~d~~v~VW~~~~~---~cl~sl~--gH~~~V~sl--~~~---~~~~~~Sgs~D 391 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD------EPLLVSGSYDGTVKVWDPRTG---KCLKSLS--GHTGRVYSL--IVD---SENRLLSGSLD 391 (537)
T ss_pred ccccccEEEEEec------CCEEEEEecCceEEEEEhhhc---eeeeeec--CCcceEEEE--Eec---CcceEEeeeec
Confidence 3488999999887 356777777778999999965 5555554 378888888 333 21678999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
+.||
T Consensus 392 ~~Ik 395 (537)
T KOG0274|consen 392 TTIK 395 (537)
T ss_pred cceE
Confidence 8875
No 178
>KOG2048|consensus
Probab=61.66 E-value=64 Score=27.22 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
.+..+++++|+|-. ..+++=+-+..|.|++......+.++..=.| .-.+.=-++.|+..-.... .||+|-..|.
T Consensus 153 q~sRvLslsw~~~~----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d-~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~ 226 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTG----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLD-RLSKREPTIVWSVLFLRDS-TIASGDSAGT 226 (691)
T ss_pred ccceEEEEEecCCc----cEEEecccCceEEEEEcCCCceEEEeeeccc-ccccCCceEEEEEEEeecC-cEEEecCCce
Confidence 35689999999844 4567777777899999998765554332222 2333345899998744333 4888888887
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
|+
T Consensus 227 V~ 228 (691)
T KOG2048|consen 227 VT 228 (691)
T ss_pred EE
Confidence 74
No 179
>KOG2321|consensus
Probab=61.58 E-value=15 Score=30.62 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=27.1
Q ss_pred EEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 37 SIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 37 ~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
-|||++...+ ..|+.|.- ....+ |+.+.-+.+.|||+|+.+|+|
T Consensus 156 evYRlNLEqG-rfL~P~~~--~~~~l----N~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 156 EVYRLNLEQG-RFLNPFET--DSGEL----NVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred ceEEEEcccc-cccccccc--ccccc----eeeeecCccceEEecccCceE
Confidence 3677665544 56666643 12334 444433447899999999986
No 180
>KOG1310|consensus
Probab=60.42 E-value=55 Score=27.42 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+.|...+.+.++|--. .|-+-|++ |+.|+..... |+|.++.- .+..++|++..-.- +++.+|++|.
T Consensus 47 ~GH~GCVN~LeWn~dG------~lL~SGSDD~r~ivWd~~~~---KllhsI~T-gHtaNIFsvKFvP~--tnnriv~sgA 114 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG------ELLASGSDDTRLIVWDPFEY---KLLHSIST-GHTANIFSVKFVPY--TNNRIVLSGA 114 (758)
T ss_pred ccccceecceeecCCC------CEEeecCCcceEEeecchhc---ceeeeeec-ccccceeEEeeecc--CCCeEEEecc
Confidence 5566777776666432 24444555 7888887754 77777754 68899999998755 7888888888
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.|..||
T Consensus 115 gDk~i~ 120 (758)
T KOG1310|consen 115 GDKLIK 120 (758)
T ss_pred CcceEE
Confidence 887775
No 181
>KOG0294|consensus
Probab=59.63 E-value=19 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 24 QPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
....|++.+.++|-||++... ++++.... +...-++.|-.. . .|.+||.++.|+
T Consensus 179 ~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~---~~r~l~~~~l~~----~-~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 179 QGDHFVVSGRNKIDIYQLDNA---SVFREIEN---PKRILCATFLDG----S-ELLVGGDNEWIS 232 (362)
T ss_pred CCCEEEEEeccEEEEEecccH---hHhhhhhc---cccceeeeecCC----c-eEEEecCCceEE
Confidence 456799999999999999875 44443322 233444444322 2 377777777663
No 182
>KOG0278|consensus
Probab=58.61 E-value=43 Score=25.46 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=35.7
Q ss_pred EEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 27 IFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 27 ~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
-|-+|||+- ++.|+..++..+. +| ...+--.+-|+..|.|. .+-|+|++||.||
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~---~~-nkgh~gpVhcVrFSPdG----E~yAsGSEDGTir 292 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIG---SY-NKGHFGPVHCVRFSPDG----ELYASGSEDGTIR 292 (334)
T ss_pred ceEEecCcceEEEEEeccCCceee---ec-ccCCCCceEEEEECCCC----ceeeccCCCceEE
Confidence 466788875 4555555553322 24 33566678899999883 3578889999986
No 183
>KOG0974|consensus
Probab=58.59 E-value=32 Score=30.07 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
|-..+|.|.|-|+ ..+|+|.+-.+-+= +-+.+.|+.| +|-+=.--|..+...+.++++++|.||.
T Consensus 217 HsaRvw~~~~~~n-------~i~t~gedctcrvW---~~~~~~l~~y-----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 217 HSARVWACCFLPN-------RIITVGEDCTCRVW---GVNGTQLEVY-----DEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred ccceeEEEEeccc-------eeEEeccceEEEEE---ecccceehhh-----hhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 5567778887776 36777777532222 2234666666 2333334566665567899999999998
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
||
T Consensus 282 lk 283 (967)
T KOG0974|consen 282 LK 283 (967)
T ss_pred hh
Confidence 86
No 184
>KOG2315|consensus
Probab=57.82 E-value=51 Score=27.14 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC---eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN---RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~---~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
-..||++|.|||-... ||+|=|- .|+||.+.- .++..+ .+.--.++=|+.- | .+|+.||+
T Consensus 269 k~GPVhdv~W~~s~~E-----F~VvyGfMPAkvtifnlr~----~~v~df----~egpRN~~~fnp~---g-~ii~lAGF 331 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGRE-----FAVVYGFMPAKVTIFNLRG----KPVFDF----PEGPRNTAFFNPH---G-NIILLAGF 331 (566)
T ss_pred CCCCceEEEECCCCCE-----EEEEEecccceEEEEcCCC----CEeEeC----CCCCccceEECCC---C-CEEEEeec
Confidence 3579999999996543 8888776 477776543 344433 2222334445543 2 45677766
Q ss_pred C
Q psy8253 84 R 84 (88)
Q Consensus 84 ~ 84 (88)
.
T Consensus 332 G 332 (566)
T KOG2315|consen 332 G 332 (566)
T ss_pred C
Confidence 3
No 185
>KOG1408|consensus
Probab=57.76 E-value=17 Score=31.24 Aligned_cols=73 Identities=11% Similarity=0.281 Sum_probs=53.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
|.|..+|-+..|+.=. -+..++|..+.+| ||||+...+ ..++|.-. ++..++-++.+... .++-...+.|.
T Consensus 498 eAHesEilcLeyS~p~--~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld--~HSssITsvKFa~~--gln~~MiscGA 569 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPV--LTNKLLASASRDRLIHVYDVKRN--YDLVQTLD--GHSSSITSVKFACN--GLNRKMISCGA 569 (1080)
T ss_pred ecccceeEEEeecCch--hhhHhhhhccCCceEEEEecccc--cchhhhhc--ccccceeEEEEeec--CCceEEEeccC
Confidence 7889999999997633 4678999999998 999998875 55666552 46888888988876 33333444454
Q ss_pred Cc
Q psy8253 84 RA 85 (88)
Q Consensus 84 ~G 85 (88)
|-
T Consensus 570 Dk 571 (1080)
T KOG1408|consen 570 DK 571 (1080)
T ss_pred ch
Confidence 43
No 186
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.48 E-value=47 Score=26.20 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 25 PRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 25 ~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
..+++..+++.|++|+..+. ++++.+ +.. .+-.+.|+.+ ..++|..+.+.+
T Consensus 117 G~LL~~~~~~~i~~yDw~~~---~~i~~i---~v~-~vk~V~Ws~~----g~~val~t~~~i 167 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETG---KLIRRI---DVS-AVKYVIWSDD----GELVALVTKDSI 167 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT-----EEEEE---SS--E-EEEEE-TT----SSEEEEE-S-SE
T ss_pred CcEEEEECCCCEEEEEhhHc---ceeeEE---ecC-CCcEEEEECC----CCEEEEEeCCeE
Confidence 56777778888999988886 788888 333 2778999976 344676666543
No 187
>KOG1188|consensus
Probab=57.43 E-value=19 Score=28.12 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=20.6
Q ss_pred CCCEEEEeCCCeEEEEEcCCCCCeeEE
Q psy8253 24 QPRIFATVGSNRVSIYECPDGGSIKLL 50 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~~~~~l 50 (88)
++.+.+.++++.|++|...+.+-++.+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f 66 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF 66 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee
Confidence 466899999999999999885333333
No 188
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=57.04 E-value=23 Score=26.20 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEE
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYE 40 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~ 40 (88)
.|.==+.|+.-......|..|+..|+.|.||+
T Consensus 64 ~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYk 95 (257)
T PF14779_consen 64 LPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYK 95 (257)
T ss_pred CCeEEEEEeccCCCCCCCeEEEEeCCEEEEEe
Confidence 34445677765533468899999999999998
No 189
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=54.77 E-value=71 Score=22.29 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCCEEEEeCCCeEEEEEcCCCC-Ce-eEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 24 QPRIFATVGSNRVSIYECPDGG-SI-KLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~-~~-~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
....+++.=++++.||+...+. .. +.++.+. -.+...+++|.. ..|++|..+
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---lp~~~~~i~~~~------~~i~v~~~~ 157 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS---LPDPPSSIAFLG------NKICVGTSK 157 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccceeEEEE---cCCCcEEEEEeC------CEEEEEeCC
Confidence 3445555555699999999863 34 6778774 458889999993 235555443
No 190
>KOG0306|consensus
Probab=53.96 E-value=58 Score=28.08 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=50.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC--C--C-C---eeEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD--G--G-S---IKLLQCYADPDIEENFYTCAWSMDLESGR 75 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~--~--~-~---~~~l~~~~d~d~~e~~y~~aWs~d~~~~~ 75 (88)
+.|...||.++-.|-. .-|+|.|++. |.+|...- + + . +++.+.-.- +-++++-|++-|+| .
T Consensus 451 ~AHdgaIWsi~~~pD~-----~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spd----g 520 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDN-----KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPD----G 520 (888)
T ss_pred hccccceeeeeecCCC-----CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCC----C
Confidence 4788899999888744 3499999996 66666442 1 1 1 333332222 46888999999988 4
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
.+||+|=.+..++
T Consensus 521 k~LaVsLLdnTVk 533 (888)
T KOG0306|consen 521 KLLAVSLLDNTVK 533 (888)
T ss_pred cEEEEEeccCeEE
Confidence 6789887776653
No 191
>KOG0276|consensus
Probab=53.13 E-value=28 Score=29.42 Aligned_cols=73 Identities=8% Similarity=0.168 Sum_probs=45.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.|.|..-+.+|-|+|-. +.|...+-+.++ +.|++-++..=++.|. .+..++..+..- ..-|++++|+
T Consensus 179 l~gHekGVN~Vdyy~~g---dkpylIsgaDD~tiKvWDyQtk~CV~TLe-----GHt~Nvs~v~fh----p~lpiiisgs 246 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGG---DKPYLISGADDLTIKVWDYQTKSCVQTLE-----GHTNNVSFVFFH----PELPIIISGS 246 (794)
T ss_pred eeccccCcceEEeccCC---CcceEEecCCCceEEEeecchHHHHHHhh-----cccccceEEEec----CCCcEEEEec
Confidence 35677777777777643 466777766665 7777766542122221 244445545443 2379999999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
+||.+|
T Consensus 247 EDGTvr 252 (794)
T KOG0276|consen 247 EDGTVR 252 (794)
T ss_pred CCccEE
Confidence 999986
No 192
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=53.07 E-value=34 Score=24.74 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCCC--CCCCCEEEEeCCCeEEEEEcCCCCCeeEEEE
Q psy8253 8 GQPLFGAQFNHLLK--DDQPRIFATVGSNRVSIYECPDGGSIKLLQC 52 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~--~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~ 52 (88)
+++++.+.+.|-.- .+.+-+|.++++..|-+|.+.+. .++++..
T Consensus 10 sQ~v~~~~~EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~-~~~~~~~ 55 (215)
T PF14761_consen 10 SQNVVPCEQEPTAVCCGGPDALFVAASGCKVEVYDLEQE-ECPLLCT 55 (215)
T ss_pred CceeeccccCcceeeccCCceEEEEcCCCEEEEEEcccC-CCceeEE
Confidence 35777777777432 23467888899999999999943 3444443
No 193
>KOG0301|consensus
Probab=52.20 E-value=1.3e+02 Score=25.63 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=32.0
Q ss_pred EEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 27 IFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 27 ~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
-|+.||++. |....+ .+ +.|..+. .+..=.|+++ .. .+..++++.|+||++|
T Consensus 192 ~flScsNDg~Ir~w~~-~g---e~l~~~~--ghtn~vYsis--~~--~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDL-DG---EVLLEMH--GHTNFVYSIS--MA--LSDGLIVSTGEDRTLR 244 (745)
T ss_pred CeEeecCCceEEEEec-cC---ceeeeee--ccceEEEEEE--ec--CCCCeEEEecCCceEE
Confidence 577777764 444444 22 2332222 4566688888 22 3467799999999986
No 194
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=50.79 E-value=90 Score=26.17 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=41.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCC--C---CCeeEEE----EE-EcCCCCCceeEEEEeec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPD--G---GSIKLLQ----CY-ADPDIEENFYTCAWSMD 70 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~--~---~~~~~l~----~~-~d~d~~e~~y~~aWs~d 70 (88)
+-.+.++=+|+|||.... -||+|--. +-.|+++.. . .++.+.. .+ .|+++-.....+.|..+
T Consensus 142 ~tgg~~~aDv~FnP~~~~----q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~ 214 (765)
T PF10214_consen 142 DTGGFPHADVAFNPWDQR----QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD 214 (765)
T ss_pred hcCCCccceEEeccCccc----eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC
Confidence 346778999999997742 68888655 699999922 1 1232221 23 45556677889999765
No 195
>KOG1920|consensus
Probab=49.67 E-value=90 Score=28.20 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=37.2
Q ss_pred ccCCCCeEEEEEecCC----------CCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 5 EDHGQPLFGAQFNHLL----------KDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~----------~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
+..+-++..++|.|=. -....+++-+-+.+.|.+....+. .++++-.. +..+-+.+||+|
T Consensus 51 ~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~-~~eivg~v-----d~GI~aaswS~D 120 (1265)
T KOG1920|consen 51 SVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPETL-ELEIVGNV-----DNGISAASWSPD 120 (1265)
T ss_pred ccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEccccc-ceeeeeec-----cCceEEEeecCC
Confidence 3444567777777711 014567777777777777744433 34554444 556888999998
No 196
>KOG0300|consensus
Probab=49.60 E-value=31 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=19.0
Q ss_pred CCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 57 DIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 57 d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
.+..-+.||||..++.- .. |-+.|+|..
T Consensus 442 gHrRMV~c~AW~eehp~-cn-LftcGFDR~ 469 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPA-CN-LFTCGFDRM 469 (481)
T ss_pred ccceeeeeeeccccCcc-cc-cccccccce
Confidence 35677999999988321 23 667777654
No 197
>KOG1240|consensus
Probab=49.28 E-value=88 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCCCEEEEeCCCe-EEEEEcCCC-CCeeEEE---EEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNR-VSIYECPDG-GSIKLLQ---CYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~-v~Vy~~~~~-~~~~~l~---~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++...|++.+.+. |.|+++..- ++....+ .|.- .+-.+++++-+. +++. +|+|+.||.|+
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~--~~sr~~~vt~~~---~~~~-~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP--EGSRVEKVTMCG---NGDQ-FAVSTKDGSVR 1123 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec--cCCceEEEEecc---CCCe-EEEEcCCCeEE
Confidence 4679999999985 899998863 2223333 3311 344455555443 3456 89999999884
No 198
>KOG0646|consensus
Probab=47.84 E-value=1.5e+02 Score=24.05 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=45.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCC------CCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPD------GGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~------~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
...|-++|-..+|.- +..+|-|-|++ +|.||.+.. +...+.+..|.| +.-++-+.-=..- .-++
T Consensus 119 ~~aHYQ~ITcL~fs~-----dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~--HtlsITDl~ig~G--g~~~ 189 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSD-----DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD--HTLSITDLQIGSG--GTNA 189 (476)
T ss_pred HHhhccceeEEEEeC-----CCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc--CcceeEEEEecCC--Cccc
Confidence 356888888888874 45678888888 699998764 224566666654 3322222221111 0145
Q ss_pred EEEEecCCcEeC
Q psy8253 77 LLAVAGSRAVIR 88 (88)
Q Consensus 77 lLa~aG~~G~Ir 88 (88)
.|.++|.|..||
T Consensus 190 rl~TaS~D~t~k 201 (476)
T KOG0646|consen 190 RLYTASEDRTIK 201 (476)
T ss_pred eEEEecCCceEE
Confidence 566666666554
No 199
>KOG1539|consensus
Probab=47.63 E-value=11 Score=32.41 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 24 QPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 24 ~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+.+||++-++ .|.||+..+. ++++.|. .+...+.+.+.|.| ..+|++|..|+.||
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~---kvvR~f~--gh~nritd~~FS~D----grWlisasmD~tIr 601 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTR---KVVREFW--GHGNRITDMTFSPD----GRWLISASMDSTIR 601 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhh---hhhHHhh--ccccceeeeEeCCC----CcEEEEeecCCcEE
Confidence 45667766665 5888888775 6777774 47788899999987 46799999999987
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=45.60 E-value=1.2e+02 Score=23.13 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeC----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVG----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.++.+.+|+| +.+.+|.+. ...+.++.+... ..+.+..+ +....+.+|+.| |+.++.+...
T Consensus 203 ~~~v~~p~wSp-----Dg~~la~~s~~~~~~~l~~~dl~~g-~~~~l~~~-----~g~~~~~~~SpD---G~~l~~~~s~ 268 (433)
T PRK04922 203 AEPILSPAWSP-----DGKKLAYVSFERGRSAIYVQDLATG-QRELVASF-----RGINGAPSFSPD---GRRLALTLSR 268 (433)
T ss_pred CCccccccCCC-----CCCEEEEEecCCCCcEEEEEECCCC-CEEEeccC-----CCCccCceECCC---CCEEEEEEeC
Confidence 34455555554 233455443 234666666443 23333322 223457889887 4454444443
Q ss_pred Cc
Q psy8253 84 RA 85 (88)
Q Consensus 84 ~G 85 (88)
+|
T Consensus 269 ~g 270 (433)
T PRK04922 269 DG 270 (433)
T ss_pred CC
Confidence 33
No 201
>KOG2066|consensus
Probab=45.46 E-value=76 Score=27.41 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=40.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM 69 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~ 69 (88)
+.+.+.|+-++++.|.....+...|.+=|...+..|+-.--|+..-+ .--+.+-.+++|.|--
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v---~l~~~eG~I~~i~W~g 170 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV---VLSEGEGPIHSIKWRG 170 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce---eeecCccceEEEEecC
Confidence 46788999999999986555677776655445888875543332211 1113456678887754
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=45.45 E-value=1.4e+02 Score=22.92 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEe----CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATV----GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtv----G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+..++.+.+|+|- .+.+|.+ |...+.++.+..+ ..+.|..+ .......+|+.| |+.|+.+..
T Consensus 197 ~~~~~~~p~wSPD-----G~~la~~s~~~g~~~i~i~dl~~G-~~~~l~~~-----~~~~~~~~~SPD---G~~La~~~~ 262 (429)
T PRK03629 197 SPQPLMSPAWSPD-----GSKLAYVTFESGRSALVIQTLANG-AVRQVASF-----PRHNGAPAFSPD---GSKLAFALS 262 (429)
T ss_pred CCCceeeeEEcCC-----CCEEEEEEecCCCcEEEEEECCCC-CeEEccCC-----CCCcCCeEECCC---CCEEEEEEc
Confidence 3445666677662 3345544 2335666666443 33444333 122345789987 455444434
Q ss_pred CCc
Q psy8253 83 SRA 85 (88)
Q Consensus 83 ~~G 85 (88)
.+|
T Consensus 263 ~~g 265 (429)
T PRK03629 263 KTG 265 (429)
T ss_pred CCC
Confidence 333
No 203
>KOG4328|consensus
Probab=45.02 E-value=94 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=27.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYEC 41 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~ 41 (88)
+|..++-++-|+|-.. . ++-||-.++|.||+-
T Consensus 367 ~HrrsV~sAyFSPs~g---t-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 367 PHRRSVNSAYFSPSGG---T-LLTTCQDNEIRVFDS 398 (498)
T ss_pred cccceeeeeEEcCCCC---c-eEeeccCCceEEeec
Confidence 6889999999999662 2 888888889999998
No 204
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=45.02 E-value=41 Score=19.33 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
...+.|=+|.++|..+.+|..... ..+|+.|+. |.+
T Consensus 20 ~~~~~~P~C~~~G~y~~~QC~~~~-------~~CwCVd~~-G~~ 55 (68)
T PF00086_consen 20 SDGVFVPQCDEDGSYEPVQCHPGS-------GFCWCVDPE-GKE 55 (68)
T ss_dssp CSECEEE-B-TTSSB-SEEEEETT-------TEEEEBSTT-S-B
T ss_pred CCCCcCceeCCCCCeeeEEEcCCC-------CCEEEECCC-CCC
Confidence 345778899999999999998521 178999976 776
No 205
>KOG0639|consensus
Probab=44.59 E-value=51 Score=27.34 Aligned_cols=67 Identities=13% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
...|+.+-|| +..--|+-|..+.|.||++... .+++.|. .+.+..-|+-=+.| |.. |=+||.|..||
T Consensus 510 paCyALa~sp----DakvcFsccsdGnI~vwDLhnq---~~Vrqfq--GhtDGascIdis~d---Gtk-lWTGGlDntvR 576 (705)
T KOG0639|consen 510 PACYALAISP----DAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQ--GHTDGASCIDISKD---GTK-LWTGGLDNTVR 576 (705)
T ss_pred hhhhhhhcCC----ccceeeeeccCCcEEEEEcccc---eeeeccc--CCCCCceeEEecCC---Cce-eecCCCcccee
Confidence 3566666666 3456799999999999999876 4444443 23444444444433 344 78888887775
No 206
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=44.59 E-value=52 Score=17.85 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCC
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPD 43 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~ 43 (88)
.+=.|+|+|-.. ..+++|..-. ++|+|+++-.
T Consensus 2 AvR~~kFsP~~~--~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPG--GNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCC--cccEEEEEccCCeEEEEEccc
Confidence 356899997432 2466666554 5899999875
No 207
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=42.74 E-value=1e+02 Score=20.75 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=39.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEE-EEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQ-CYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~-~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..|...+.+++|+|... .+++..+.+ .+.+|+... -++++ .+.. ..... .. .|+.+. .++++++
T Consensus 195 ~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~-~~~~~-~~-~~~~~~----~~~~~~~ 260 (466)
T COG2319 195 AGHTDPVSSLAFSPDGG----LLIASGSSDGTIRLWDLST---GKLLRSTLSG-HSDSV-VS-SFSPDG----SLLASGS 260 (466)
T ss_pred ccCCCceEEEEEcCCcc----eEEEEecCCCcEEEEECCC---CcEEeeecCC-CCcce-eE-eECCCC----CEEEEec
Confidence 34788999999995432 456653444 577885552 23443 2221 11221 22 666662 5566888
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.++.++
T Consensus 261 ~d~~~~ 266 (466)
T COG2319 261 SDGTIR 266 (466)
T ss_pred CCCcEE
Confidence 887664
No 208
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=42.63 E-value=1.2e+02 Score=22.31 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 34 NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 34 ~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
..|.++++... ..+.+..+ ....++++|+.| ++.++.+...+
T Consensus 214 ~~i~v~d~~~g-~~~~~~~~-----~~~~~~~~~spD---g~~l~~~~~~~ 255 (417)
T TIGR02800 214 PEIYVQDLATG-QREKVASF-----PGMNGAPAFSPD---GSKLAVSLSKD 255 (417)
T ss_pred cEEEEEECCCC-CEEEeecC-----CCCccceEECCC---CCEEEEEECCC
Confidence 35777776553 23333322 334567899877 44544444433
No 209
>KOG0321|consensus
Probab=42.20 E-value=48 Score=27.95 Aligned_cols=70 Identities=17% Similarity=0.352 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEE-EEEEc-CCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 12 FGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLL-QCYAD-PDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 12 y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l-~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
|++.|.+-. ...++||+.-.+ .|.+|.-..-. .++- +.+.+ .-+...+++++|.. +.-+|+.+.+|-.||
T Consensus 53 f~~sFs~~~--n~eHiLavadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 53 FADSFSAAP--NKEHILAVADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIR 125 (720)
T ss_pred ccccccCCC--CccceEEEecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCC----CceeEEEccCCceee
Confidence 667777644 456777766555 35555544321 1110 11111 24677899999997 356688888877765
No 210
>KOG4497|consensus
Probab=41.75 E-value=31 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
..-.+-+++|+.- +.+||+|+.||.+|
T Consensus 209 ~~lG~k~v~wsP~----~qflavGsyD~~lr 235 (447)
T KOG4497|consen 209 RGLGLKFVEWSPC----NQFLAVGSYDQMLR 235 (447)
T ss_pred eccceeEEEeccc----cceEEeeccchhhh
Confidence 3455778899865 57899999998776
No 211
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=41.12 E-value=78 Score=26.51 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=39.0
Q ss_pred EEEEecCCCC---CCCCEEEEeCCCeEEEEEcCC--CCC-eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 13 GAQFNHLLKD---DQPRIFATVGSNRVSIYECPD--GGS-IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 13 ~v~Fnp~~~~---~~~~~fAtvG~~~v~Vy~~~~--~~~-~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
-|+|+|+.+- ...|.+.=++.+. |+|+.| .|| +++.++ .|=-....|.+.+ + +.+-.||+||..|-
T Consensus 513 vVqy~p~~kf~qmt~eqtlvGlS~~s--vFrIDPR~~gNKi~v~es-KdY~tKn~Fss~~-t----TesGyIa~as~kGD 584 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLVGLSDYS--VFRIDPRARGNKIKVVES-KDYKTKNKFSSGM-T----TESGYIAAASRKGD 584 (776)
T ss_pred eeecCCchhHHhcCccceEEeecccc--eEEecccccCCceeeeee-hhccccccccccc-c----ccCceEEEecCCCc
Confidence 6899998652 3455555555555 666666 444 555432 1212333343322 2 34556999999998
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
||
T Consensus 585 ir 586 (776)
T COG5167 585 IR 586 (776)
T ss_pred ee
Confidence 86
No 212
>KOG0306|consensus
Probab=40.35 E-value=45 Score=28.72 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=34.2
Q ss_pred CCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 24 QPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
..+..|+-+..+|.+|.+-.. ++.+...+-+...+.-++.=+ .+.++||+|=.||.||
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtg---e~~~~l~~~~~k~evt~l~~~----~d~l~lAVGYaDGsVq 90 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTG---EIEKKLILLKKKAEVTCLRSS----DDILLLAVGYADGSVQ 90 (888)
T ss_pred CCcEEEEeccccEeEEeeecc---hhhhhhhhhcccceEEEeecc----CCcceEEEEecCceEE
Confidence 356666667777888888776 222222221222233333322 2467899999999986
No 213
>KOG4578|consensus
Probab=40.14 E-value=30 Score=27.06 Aligned_cols=33 Identities=36% Similarity=0.717 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 35 RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 35 ~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
.|.|=+|..||+..-+|.+ -|+=+||.++ +|.|
T Consensus 96 ~vFvPeC~~DG~f~qvQCh--------~ytGCWCvtp-~GrP 128 (421)
T KOG4578|consen 96 GVFVPECRKDGNFAQVQCH--------GYTGCWCVTP-QGRP 128 (421)
T ss_pred ceecccccCCCCeeeEEec--------cccceEEeCC-CCcc
Confidence 3667889999999999988 4556999985 3544
No 214
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=40.09 E-value=86 Score=20.84 Aligned_cols=39 Identities=18% Similarity=0.434 Sum_probs=22.8
Q ss_pred ecCCCCCCCCEEEEeCCC--eEEEEEcCCCCC-eeEEEEEEcC
Q psy8253 17 NHLLKDDQPRIFATVGSN--RVSIYECPDGGS-IKLLQCYADP 56 (88)
Q Consensus 17 np~~~~~~~~~fAtvG~~--~v~Vy~~~~~~~-~~~l~~~~d~ 56 (88)
-||.++ +..++-.+|++ .|..|++..+.+ +.-+..|.-.
T Consensus 15 ~P~yD~-dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~ 56 (136)
T PF08954_consen 15 MPFYDE-DTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSP 56 (136)
T ss_dssp EEEE-T-TT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--S
T ss_pred EeeEcC-CCCEEEEEeccCcEEEEEEEcCCCCceEEccccccC
Confidence 467766 45555555555 599999988754 7777777543
No 215
>KOG0179|consensus
Probab=39.49 E-value=30 Score=25.30 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=17.5
Q ss_pred EEecCCCCCCCCEEEEeCCCeEEEE
Q psy8253 15 QFNHLLKDDQPRIFATVGSNRVSIY 39 (88)
Q Consensus 15 ~Fnp~~~~~~~~~fAtvG~~~v~Vy 39 (88)
.||||... ..-+.|+.|++.+.|-
T Consensus 21 ~f~PY~~N-GGT~vaIaG~dFavvA 44 (235)
T KOG0179|consen 21 RFSPYEDN-GGTTVAIAGEDFAVVA 44 (235)
T ss_pred cCCccccC-CceEEEEcCCceEEEe
Confidence 69999876 4567777777776553
No 216
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=39.48 E-value=33 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.5
Q ss_pred EecCCCCCCCCEEEEeCCCeEEEEE
Q psy8253 16 FNHLLKDDQPRIFATVGSNRVSIYE 40 (88)
Q Consensus 16 Fnp~~~~~~~~~fAtvG~~~v~Vy~ 40 (88)
||||... ..-++|+.+++.|.+--
T Consensus 1 ~~~~~~~-G~Tvigik~~dgVvlaa 24 (212)
T cd03757 1 FSPYTDN-GGTVLAIAGNDFAVIAG 24 (212)
T ss_pred CCCccCC-CccEEEEEcCCEEEEEE
Confidence 8999876 57789999999887754
No 217
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=38.04 E-value=36 Score=21.27 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=14.8
Q ss_pred CCCCEEEEeCCCeEEEEEcCCCCCee
Q psy8253 23 DQPRIFATVGSNRVSIYECPDGGSIK 48 (88)
Q Consensus 23 ~~~~~fAtvG~~~v~Vy~~~~~~~~~ 48 (88)
+...+.||-|.+++.|| .+.+++++
T Consensus 14 ~~~~~~Atr~~dy~~VY-~~~Gr~~~ 38 (93)
T PF12904_consen 14 RYDRIVATRGKDYALVY-TPTGRPFT 38 (93)
T ss_dssp GGG--EEEE-SSEEEEE-ESS---EE
T ss_pred CceeEEEEcCCCEEEEE-CCCCCEEE
Confidence 46789999999999999 44444443
No 218
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=38.01 E-value=1.6e+02 Score=24.71 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=40.0
Q ss_pred CCCEEEEeCCC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 24 QPRIFATVGSN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 24 ~~~~fAtvG~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
....+|+|..+ +++|++..... ++.-+.| +.++.+-+.-|+..+ +++.+|++|=.
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f---~~~~~I~dLDWtst~-d~qsiLaVGf~ 95 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGV-LEYEESF---SEDDPIRDLDWTSTP-DGQSILAVGFP 95 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcE-EEEeeee---cCCCceeeceeeecC-CCCEEEEEEcC
Confidence 45678888744 59999987652 5555666 578889999999875 46777887743
No 219
>KOG1912|consensus
Probab=37.72 E-value=1.1e+02 Score=26.70 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC--------CCceEEEEecCCcEe
Q psy8253 21 KDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE--------SGRPLLAVAGSRAVI 87 (88)
Q Consensus 21 ~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~--------~~~plLa~aG~~G~I 87 (88)
+|+..-++|--.+.-|.|.+--. .++||++.. +...+-.+.|+..+. +-.++||+|-..|+|
T Consensus 22 Dw~~~GLiAygshslV~VVDs~s---~q~iqsie~--h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 22 DWSPSGLIAYGSHSLVSVVDSRS---LQLIQSIEL--HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccCccceEEEecCceEEEEehhh---hhhhhcccc--CccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 35556788988888888887655 478888854 568899999998643 136789999999987
No 220
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=37.63 E-value=1.5e+02 Score=25.54 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=38.6
Q ss_pred CCCCEEEEeCCCeEEEEEcCCCCCeeEE----EEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNRVSIYECPDGGSIKLL----QCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~v~Vy~~~~~~~~~~l----~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
...+.|--...+++.-.+.-..++ +++ +.| ...-.|-|.|= +++=.||+|+.+|.||
T Consensus 541 t~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y---~~~~~Fs~~aT-----t~~G~iavgs~~G~IR 601 (794)
T PF08553_consen 541 TNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQY---SSKNNFSCFAT-----TEDGYIAVGSNKGDIR 601 (794)
T ss_pred CCCceEEEECCCceEEeccCCCCC-ceeecccccc---ccCCCceEEEe-----cCCceEEEEeCCCcEE
Confidence 357899999999977776666654 333 355 34555665542 3344599999999997
No 221
>KOG2395|consensus
Probab=37.30 E-value=1.2e+02 Score=25.25 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=43.7
Q ss_pred eEEEEEecCCCC---CCCCEEEEeCCCeEEEEEcCCCCC--eeEEE--EEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 11 LFGAQFNHLLKD---DQPRIFATVGSNRVSIYECPDGGS--IKLLQ--CYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 11 ~y~v~Fnp~~~~---~~~~~fAtvG~~~v~Vy~~~~~~~--~~~l~--~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
|-=+.|+|..+. ...+.|.=+..++|.=.+.-..+. +.+.| .| ...-+|-|.|= +++-.||+||.
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy---~~k~nFsc~aT-----T~sG~IvvgS~ 449 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY---STKNNFSCFAT-----TESGYIVVGSL 449 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc---ccccccceeee-----cCCceEEEeec
Confidence 556778886542 457788888888865555444432 23333 44 34555655552 34456999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|-||
T Consensus 450 ~GdIR 454 (644)
T KOG2395|consen 450 KGDIR 454 (644)
T ss_pred CCcEE
Confidence 99987
No 222
>cd00191 TY Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
Probab=36.62 E-value=38 Score=19.65 Aligned_cols=36 Identities=19% Similarity=0.556 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
...+.|=+|.++|..+.+|.+... ..+|+.|.. |.+
T Consensus 18 ~~~~~iP~C~~~G~y~~~QC~~~~-------g~CwCVd~~-G~~ 53 (66)
T cd00191 18 LSGLYVPQCDEDGNYEPVQCHGST-------GYCWCVDPD-GEE 53 (66)
T ss_pred CCCccCcccCCCCCEeeeeecCCC-------CcEEEECCC-CcC
Confidence 345677789999999999988432 478999976 776
No 223
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.17 E-value=73 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe------EEEEEcCCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR------VSIYECPDG 44 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~------v~Vy~~~~~ 44 (88)
+-|.+||+.+.|.---..+..+ ||.+..++ .||+||...
T Consensus 74 ~LhSqPI~~IRvwGvGrdngrd-FA~vard~~T~~~~CHVFRC~~p 118 (138)
T cd01272 74 VLHSQPIHTIRVWGVGRDNGRD-FAYVIRDERTRGSNCHVFRCDTR 118 (138)
T ss_pred eEEeeeeeEEEEEEecCCCCcc-eEEEeecCCCceeEEEEEEcCCC
Confidence 4577899999998876544444 99987664 788888753
No 224
>KOG2139|consensus
Probab=35.99 E-value=74 Score=25.28 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=41.6
Q ss_pred eEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
+-+++++| +-.-||+.+.+ -|.||+-..+.+ .+|++- ...++-++||-.. ++.. |++|+..|+
T Consensus 101 lr~~aWhq-----H~~~fava~nddvVriy~ksst~p-t~Lks~----sQrnvtclawRPl--sase-lavgCr~gI 164 (445)
T KOG2139|consen 101 LRGVAWHQ-----HIIAFAVATNDDVVRIYDKSSTCP-TKLKSV----SQRNVTCLAWRPL--SASE-LAVGCRAGI 164 (445)
T ss_pred eeeEeech-----hhhhhhhhccCcEEEEeccCCCCC-ceecch----hhcceeEEEeccC--Ccce-eeeeeccee
Confidence 45677777 23347776666 477887666433 445543 5667889999977 4454 888888776
No 225
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=35.81 E-value=1.7e+02 Score=21.24 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEe
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWS 68 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs 68 (88)
.++-|++|+|- ...+||+..++ -.||++..+| ++|+.+.-. .-.++=.+++.
T Consensus 22 ~e~SGLTy~pd----~~tLfaV~d~~-~~i~els~~G--~vlr~i~l~-g~~D~EgI~y~ 73 (248)
T PF06977_consen 22 DELSGLTYNPD----TGTLFAVQDEP-GEIYELSLDG--KVLRRIPLD-GFGDYEGITYL 73 (248)
T ss_dssp S-EEEEEEETT----TTEEEEEETTT-TEEEEEETT----EEEEEE-S-S-SSEEEEEE-
T ss_pred CCccccEEcCC----CCeEEEEECCC-CEEEEEcCCC--CEEEEEeCC-CCCCceeEEEE
Confidence 35889999983 34566666665 4467888775 677877542 23445556654
No 226
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=34.08 E-value=55 Score=16.81 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=14.6
Q ss_pred eEEEEEcCCCCCeeEEEEE
Q psy8253 35 RVSIYECPDGGSIKLLQCY 53 (88)
Q Consensus 35 ~v~Vy~~~~~~~~~~l~~~ 53 (88)
.=+||++.+++...+|.+|
T Consensus 16 ~GTvf~~~~~g~~t~L~~F 34 (34)
T TIGR03803 16 FGTLYRLSTAGGTTVLHSF 34 (34)
T ss_pred ceeEEEEcCCCCeEEEEeC
Confidence 4689999998877777653
No 227
>KOG0288|consensus
Probab=33.60 E-value=87 Score=25.14 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=18.7
Q ss_pred eeEEEEeecCCC-CceEEEEecCCcEeC
Q psy8253 62 FYTCAWSMDLES-GRPLLAVAGSRAVIR 88 (88)
Q Consensus 62 ~y~~aWs~d~~~-~~plLa~aG~~G~Ir 88 (88)
+..+-|+...-+ +..++|+||.+|.|+
T Consensus 385 k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 385 KCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred ccccccceeEECCCCceeeeccCCCcEE
Confidence 444557775333 367899999999874
No 228
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.55 E-value=2.4e+02 Score=22.25 Aligned_cols=82 Identities=13% Similarity=0.259 Sum_probs=57.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC-CC------eeEEEEEEcCCCCCceeEEEEeec-CCCCce
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG-GS------IKLLQCYADPDIEENFYTCAWSMD-LESGRP 76 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~-~~------~~~l~~~~d~d~~e~~y~~aWs~d-~~~~~p 76 (88)
.+-+.||-.++.-+|.........|+.=-+++.||++... |. .++-..|... -...-|..++-.- ..+++.
T Consensus 68 ~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~-l~~~a~nm~~G~Fgg~~~~~ 146 (418)
T PF14727_consen 68 TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHS-LQRTAYNMCCGPFGGVKGRD 146 (418)
T ss_pred EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEe-cccceeEEEEEECCCCCCce
Confidence 4557799999999998766778999999999999999542 22 5555666442 2333344444432 334578
Q ss_pred EEEEecCCcEe
Q psy8253 77 LLAVAGSRAVI 87 (88)
Q Consensus 77 lLa~aG~~G~I 87 (88)
.||+=+.||.+
T Consensus 147 ~IcVQS~DG~L 157 (418)
T PF14727_consen 147 FICVQSMDGSL 157 (418)
T ss_pred EEEEEecCceE
Confidence 89999999976
No 229
>KOG1334|consensus
Probab=33.30 E-value=1.4e+02 Score=24.48 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=43.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCC--ceeEEEEeecCCCCceEEEEec
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEE--NFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e--~~y~~aWs~d~~~~~plLa~aG 82 (88)
.|..+++-.+--|+. +..|-+||+++ |.=+++..+.+-+.+- .+-.|+++ .+|++| .+|.+-. .+|+||
T Consensus 230 ~h~g~vhklav~p~s----p~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia--~~P~nt~-~faVgG 301 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDS----PKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIA--VDPRNTN-EFAVGG 301 (559)
T ss_pred cccCccceeeecCCC----CCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEe--cCCCCcc-ccccCC
Confidence 566777777776655 55699999997 4446666665533333 32223443 455554 4543323 589998
Q ss_pred CCc
Q psy8253 83 SRA 85 (88)
Q Consensus 83 ~~G 85 (88)
.+-
T Consensus 302 ~dq 304 (559)
T KOG1334|consen 302 SDQ 304 (559)
T ss_pred hhh
Confidence 764
No 230
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=32.79 E-value=95 Score=21.93 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=30.6
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
+.+++.....||.+|=|... .+..|-.=|...+.||++.+.
T Consensus 94 S~~~k~~~~pfg~s~lpL~~--~~gt~l~Dg~H~L~vyk~d~~ 134 (189)
T cd08695 94 STKDKGEKKLFGFSFVPLMR--EDGTTLPDGSHELYVYKCDEN 134 (189)
T ss_pred eeccCCCCCceEEEEEeecc--cCCcEEcCCcEEEEEEecccc
Confidence 34444445789999999885 356677777778999999873
No 231
>KOG1240|consensus
Probab=32.73 E-value=2.6e+02 Score=25.75 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=47.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcC----------------CCCCceeEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADP----------------DIEENFYTCAWS 68 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~----------------d~~e~~y~~aWs 68 (88)
-+..++--|.-+|+.+....-++|+- |.|.|.++.+..+-.-.++. -.|+ +..+..+++
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~-~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~--- 1311 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW-ASDGAPILSYALPSNDARKPDSLAGISCG--- 1311 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE-cCCCCcchhhhcccccCCCCCcccceeee---
Confidence 34456667777777765566677777 78889999999863222222 1111 111111111
Q ss_pred ecCCCCceEEEEecCCcEeC
Q psy8253 69 MDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 69 ~d~~~~~plLa~aG~~G~Ir 88 (88)
.-++++++.+||.|+.||
T Consensus 1312 --~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1312 --VCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred --cccCCceeeecCCcccee
Confidence 114578999999999987
No 232
>KOG1334|consensus
Probab=31.45 E-value=82 Score=25.86 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=29.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCee
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIK 48 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~ 48 (88)
-.|..++|--+|-||.. .+..++++-+ .|.+=++...+.++
T Consensus 182 SGH~~NvfQaKFiP~s~---d~ti~~~s~dgqvr~s~i~~t~~~e 223 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSG---DRTIVTSSRDGQVRVSEILETGYVE 223 (559)
T ss_pred cccccchhhhhccCCCC---CcCceeccccCceeeeeecccccee
Confidence 35778899999999874 4556666665 57777777765443
No 233
>KOG1912|consensus
Probab=31.24 E-value=3.7e+02 Score=23.75 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
+.|..++-++.+.|..+..-.-+.|+-|.+.+..|.-..+ +.+..|.- ..|-+.| .+.||.+.++ +++-|..
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---~k~Wk~~y--s~~iLs~--f~~DPfd~rh-~~~l~s~ 177 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---EKFWKYDY--SHEILSC--FRVDPFDSRH-FCVLGSK 177 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---ceeecccc--CCcceee--eeeCCCCcce-EEEEccC
Confidence 5677788888888877542245667778888999987776 55665521 2333332 4678887777 5555555
Q ss_pred cEe
Q psy8253 85 AVI 87 (88)
Q Consensus 85 G~I 87 (88)
|.+
T Consensus 178 g~v 180 (1062)
T KOG1912|consen 178 GFV 180 (1062)
T ss_pred ceE
Confidence 553
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.03 E-value=3.2e+02 Score=23.17 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCeEEEEEcCCC----C-----CeeEE-EEEE------cCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 24 QPRIFATVGSNRVSIYECPDG----G-----SIKLL-QCYA------DPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~----~-----~~~~l-~~~~------d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
+...+|.+|...|.|.+++.. + +-++. +++. .....-.+--+.|-....++.. |++=-.|++|
T Consensus 95 ~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~-l~vLtsdn~l 173 (717)
T PF10168_consen 95 TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH-LVVLTSDNTL 173 (717)
T ss_pred CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe-EEEEecCCEE
Confidence 567899999999999999863 1 11221 3321 1245667889999988666677 4444455555
Q ss_pred C
Q psy8253 88 R 88 (88)
Q Consensus 88 r 88 (88)
|
T Consensus 174 R 174 (717)
T PF10168_consen 174 R 174 (717)
T ss_pred E
Confidence 4
No 235
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=30.31 E-value=39 Score=24.22 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=11.3
Q ss_pred EEEEeCCCeEEEEE
Q psy8253 27 IFATVGSNRVSIYE 40 (88)
Q Consensus 27 ~fAtvG~~~v~Vy~ 40 (88)
.||.||++++-||-
T Consensus 116 T~AscG~DNIgvyv 129 (205)
T COG4300 116 TFASCGADNIGVFV 129 (205)
T ss_pred EEeccCCcceEEEe
Confidence 58889999888874
No 236
>smart00211 TY Thyroglobulin type I repeats. The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases and binding partners of heparin.
Probab=30.28 E-value=54 Score=17.81 Aligned_cols=29 Identities=28% Similarity=0.753 Sum_probs=21.4
Q ss_pred EcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 40 ECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 40 ~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
+|.++|..+.+|.+... -.+|+.| .+|.+
T Consensus 3 ~C~~~G~y~~~QC~~~~-------g~CwCVd-~~G~~ 31 (46)
T smart00211 3 QCDEDGNYEPVQCDGSS-------GQCWCVD-ATGRE 31 (46)
T ss_pred ccCCCCCCcceeecCCC-------CcEEEEC-CCCCC
Confidence 56778888899988542 2589999 56766
No 237
>KOG2096|consensus
Probab=30.09 E-value=92 Score=24.46 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=27.0
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD 43 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~ 43 (88)
...|+.++-+++|+-- ...|||+.++| |.|+++..
T Consensus 82 LKgH~~~vt~~~FsSd-----GK~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSD-----GKKLATISGDRSIRLWDVRD 117 (420)
T ss_pred hhccCCceeeeEEcCC-----CceeEEEeCCceEEEEecch
Confidence 3578999999999863 45699999987 77777654
No 238
>KOG2066|consensus
Probab=30.06 E-value=1.7e+02 Score=25.32 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=38.3
Q ss_pred CeEEEEEecCCCC------CCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec--CCCCceEEEE
Q psy8253 10 PLFGAQFNHLLKD------DQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD--LESGRPLLAV 80 (88)
Q Consensus 10 ~~y~v~Fnp~~~~------~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d--~~~~~plLa~ 80 (88)
.++.+++||...- .+...+|+|+.+. |.|-.+-.+.++.. | |-.--.-++|-..| .-.... .++
T Consensus 62 ~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~---~---df~rpiksial~Pd~~~~~sk~-fv~ 134 (846)
T KOG2066|consen 62 YLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQ---Y---DFKRPIKSIALHPDFSRQQSKQ-FVS 134 (846)
T ss_pred EEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCcccee---E---ecCCcceeEEeccchhhhhhhh-eee
Confidence 3556666764322 2367899999886 77777776643221 1 11222334444444 111233 777
Q ss_pred ecCCcEe
Q psy8253 81 AGSRAVI 87 (88)
Q Consensus 81 aG~~G~I 87 (88)
||..|.|
T Consensus 135 GG~aglv 141 (846)
T KOG2066|consen 135 GGMAGLV 141 (846)
T ss_pred cCcceEE
Confidence 8887744
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=29.09 E-value=2.6e+02 Score=21.34 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeC--C--CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVG--S--NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG--~--~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
++.++.+.+|+|- .+.+|.+. + ..+.++++... ....|..+ +......+|+.| |+.++.+..
T Consensus 194 ~~~~v~~p~wSPD-----G~~la~~s~~~~~~~I~~~dl~~g-~~~~l~~~-----~g~~~~~~~SPD---G~~la~~~~ 259 (427)
T PRK02889 194 SPEPIISPAWSPD-----GTKLAYVSFESKKPVVYVHDLATG-RRRVVANF-----KGSNSAPAWSPD---GRTLAVALS 259 (427)
T ss_pred CCCCcccceEcCC-----CCEEEEEEccCCCcEEEEEECCCC-CEEEeecC-----CCCccceEECCC---CCEEEEEEc
Confidence 4456666667662 23344332 2 34777777543 23333322 233457899987 445444455
Q ss_pred CCc
Q psy8253 83 SRA 85 (88)
Q Consensus 83 ~~G 85 (88)
.+|
T Consensus 260 ~~g 262 (427)
T PRK02889 260 RDG 262 (427)
T ss_pred cCC
Confidence 554
No 240
>KOG0646|consensus
Probab=28.69 E-value=3.2e+02 Score=22.19 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=41.2
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.-+|..+|-+..-.+= +.+..+.|++-+| +.+|++..+ .+|.++.. +-.+-+|+=... ...+-+|+
T Consensus 170 f~~HtlsITDl~ig~G---g~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f---p~si~av~lDpa----e~~~yiGt 236 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSG---GTNARLYTASEDRTIKLWDLSLG---VLLLTITF---PSSIKAVALDPA----ERVVYIGT 236 (476)
T ss_pred eccCcceeEEEEecCC---CccceEEEecCCceEEEEEeccc---eeeEEEec---CCcceeEEEccc----ccEEEecC
Confidence 3455665555443331 3678899999997 899999887 66666643 233344432221 12255555
Q ss_pred CCcEe
Q psy8253 83 SRAVI 87 (88)
Q Consensus 83 ~~G~I 87 (88)
.+|.|
T Consensus 237 ~~G~I 241 (476)
T KOG0646|consen 237 EEGKI 241 (476)
T ss_pred CcceE
Confidence 55554
No 241
>KOG0642|consensus
Probab=28.64 E-value=1.9e+02 Score=24.01 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCe-EEEEEc---CCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNR-VSIYEC---PDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~-v~Vy~~---~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
...++|+++.-+. +-++.+ .++....+.+.|....++-.+-|++=+.. +.. +-+||-||.||
T Consensus 304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n---~~~-~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN---GEH-CYSGGIDGTIR 369 (577)
T ss_pred CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC---ceE-EEeeccCceee
Confidence 4578899999886 677888 33333444444443356666777665433 444 77788888775
No 242
>KOG2096|consensus
Probab=28.64 E-value=1.1e+02 Score=24.08 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=16.9
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
+++.+-+++|+.+ |+ .|++-|.+-
T Consensus 372 h~~~Is~is~~~~---g~-~~atcGdr~ 395 (420)
T KOG2096|consen 372 HSTTISSISYSSD---GK-YIATCGDRY 395 (420)
T ss_pred hcCceeeEEecCC---Cc-EEeeeccee
Confidence 5788999999987 33 366666553
No 243
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=28.50 E-value=34 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=15.5
Q ss_pred EEEEEecCCCCCCCCEEEEeCCCeEEEE
Q psy8253 12 FGAQFNHLLKDDQPRIFATVGSNRVSIY 39 (88)
Q Consensus 12 y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy 39 (88)
|||.|-. ..+|+.|+.++.+|..-
T Consensus 19 ygvefkt----ngsqtlaii~~ekislg 42 (79)
T PF09061_consen 19 YGVEFKT----NGSQTLAIIKNEKISLG 42 (79)
T ss_dssp TT-EEEE----ETTEEEEEETTEEEE-T
T ss_pred hCeEEec----CCceEEEeecCceeehh
Confidence 4455544 24889999999988753
No 244
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=28.49 E-value=2.9e+02 Score=21.64 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCC-----CCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPD-----IEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d-----~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.+++.+|++.++.. .|+...+.. .-.+.|-+|=-.++.+|.-...+.+++|.+
T Consensus 126 ~n~l~~f~id~~~g--~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~ 183 (381)
T PF02333_consen 126 RNSLRLFRIDPDTG--ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRV 183 (381)
T ss_dssp T-EEEEEEEETTTT--EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEE
T ss_pred CCeEEEEEecCCCC--cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceE
Confidence 46799999997532 344444322 224467777655555676667777777754
No 245
>KOG2041|consensus
Probab=28.46 E-value=52 Score=28.58 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 58 IEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+-.+-+++|.+. .-.||+||.+|.+|
T Consensus 13 nnvkL~c~~WNke----~gyIAcgG~dGlLK 39 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE----SGYIACGGADGLLK 39 (1189)
T ss_pred CCceEEEEEEccc----CCeEEeccccceeE
Confidence 3455789999987 45799999999875
No 246
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=28.09 E-value=1.2e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 59 EENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 59 ~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
++.+|+++.+....++.+-|.+||.-|
T Consensus 136 ~~~ly~~tF~~~~~~~~~~l~IG~lQG 162 (288)
T PF04393_consen 136 GQRLYSLTFSFVPQNGENTLFIGGLQG 162 (288)
T ss_pred CceEEEEEEEEEccCCCceEEEEeeeC
Confidence 699999999998777788899998655
No 247
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=27.79 E-value=1e+02 Score=24.24 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCEEEEeCC--CeEEEEEcCCCCCeeE-----EEEEEc-------CCCCCceeEEEEeecCCCC-ceEEEEe
Q psy8253 25 PRIFATVGS--NRVSIYECPDGGSIKL-----LQCYAD-------PDIEENFYTCAWSMDLESG-RPLLAVA 81 (88)
Q Consensus 25 ~~~fAtvG~--~~v~Vy~~~~~~~~~~-----l~~~~d-------~d~~e~~y~~aWs~d~~~~-~plLa~a 81 (88)
.-....+|. +||..|+-.....|+- .|+..- -+-+|.+..+.|..+ ++ ++.|+++
T Consensus 37 tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~--t~r~hFLlst 106 (460)
T COG5170 37 TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD--TGRNHFLLST 106 (460)
T ss_pred ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC--CCcceEEEec
Confidence 333445566 7999999887665554 454422 156889999999998 44 4444443
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=27.69 E-value=2.5e+02 Score=20.66 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=36.5
Q ss_pred eEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcC-CCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 11 LFGAQFNHLLKDDQPRIFATV-GSNRVSIYECP-DGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~-~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
--+++++|- ...++++. |.+.|.+|++. .++.++.++.+.-. ...=..++-+.+ |+-|+++...++.|
T Consensus 247 ~~~i~ispd----g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~---g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 247 PAEIAISPD----GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPD---GRYLYVANQDSNTV 316 (345)
T ss_dssp EEEEEE-TT----SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TT---SSEEEEEETTTTEE
T ss_pred ceeEEEecC----CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCC---CCEEEEEecCCCeE
Confidence 445555552 34455555 66789999994 55678888776421 222233444333 45545544444443
No 249
>KOG4227|consensus
Probab=27.17 E-value=2.1e+02 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=45.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCC---CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDG---GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~---~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.|-..|.+++|+.. .+.+|.=|.+ |+.++.+.+- ..-+.|+.... -+.-++||+++. .++..|-.|
T Consensus 54 ~H~GCiNAlqFS~N-----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-~H~SNIF~L~F~----~~N~~~~SG 123 (609)
T KOG4227|consen 54 EHTGCINALQFSHN-----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-PHRSNIFSLEFD----LENRFLYSG 123 (609)
T ss_pred hhccccceeeeccC-----CeEEeecCCcceeeeechHHHHhhcCCCCceeccC-ccccceEEEEEc----cCCeeEecC
Confidence 35567788888764 3445555555 5888877652 22255665543 245778888875 456678888
Q ss_pred cCCcEe
Q psy8253 82 GSRAVI 87 (88)
Q Consensus 82 G~~G~I 87 (88)
|..|.|
T Consensus 124 ~~~~~V 129 (609)
T KOG4227|consen 124 ERWGTV 129 (609)
T ss_pred CCccee
Confidence 877764
No 250
>KOG2314|consensus
Probab=26.93 E-value=1.6e+02 Score=24.83 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCCEEEEeCCCe----EEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 24 QPRIFATVGSNR----VSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 24 ~~~~fAtvG~~~----v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
+.+-||+..++- +.+|...++. ..++++.+ |. ....++-||..
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~---dk-~~~N~vfwsPk 503 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL---DK-KFANTVFWSPK 503 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhh---cc-cccceEEEcCC
Confidence 456688887773 8999999643 46777777 34 77889999987
No 251
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=26.15 E-value=46 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.6
Q ss_pred cccccCCCCeEEEEEecCCC
Q psy8253 2 SHKEDHGQPLFGAQFNHLLK 21 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~ 21 (88)
+|+...++|+|.|+|+-...
T Consensus 188 QiqG~~rQPvFsCKFs~~~~ 207 (460)
T PF06219_consen 188 QIQGNIRQPVFSCKFSRDRN 207 (460)
T ss_pred EecCccccceeEEEEEeccc
Confidence 57788899999999987643
No 252
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=25.99 E-value=54 Score=20.48 Aligned_cols=17 Identities=18% Similarity=0.612 Sum_probs=10.5
Q ss_pred EEEEeCCCe------EEEEEcCC
Q psy8253 27 IFATVGSNR------VSIYECPD 43 (88)
Q Consensus 27 ~fAtvG~~~------v~Vy~~~~ 43 (88)
=|++|+|.+ |+||+.|.
T Consensus 68 C~~~C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 68 CFFNCSGEQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEETTEEEEEEEEEEEEB--S
T ss_pred EEEEcCCeEEEeEEeeEEeCCCC
Confidence 467777664 78887764
No 253
>KOG1963|consensus
Probab=25.90 E-value=3.9e+02 Score=23.17 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=34.2
Q ss_pred EEEEeCCC-eEEEEEcCCCCC---------eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 27 IFATVGSN-RVSIYECPDGGS---------IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 27 ~fAtvG~~-~v~Vy~~~~~~~---------~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.++|+|.+ -+.|+.|..+.+ |+.+.+| +.-..-.++|+.|. . |.+.|.+++|
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy----~k~~i~a~~fs~dG----s-lla~s~~~~I 532 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY----HKTPITALCFSQDG----S-LLAVSFDDTI 532 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeecc----ccCcccchhhcCCC----c-EEEEecCCEE
Confidence 78888766 477888855432 6777778 45667788999883 3 4444555544
No 254
>COG3650 Predicted membrane protein [Function unknown]
Probab=25.26 E-value=2e+02 Score=19.71 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=35.1
Q ss_pred CCCeEEEEEecC----CCC-CCCCEEEEeCCC---eEEEEEcCCCCC-eeEE-E--EEEcCCCCCceeE
Q psy8253 8 GQPLFGAQFNHL----LKD-DQPRIFATVGSN---RVSIYECPDGGS-IKLL-Q--CYADPDIEENFYT 64 (88)
Q Consensus 8 ~~~~y~v~Fnp~----~~~-~~~~~fAtvG~~---~v~Vy~~~~~~~-~~~l-~--~~~d~d~~e~~y~ 64 (88)
.-|+|+|+|+-- ..+ ....-++++++. -+.+|+..-++. .+++ . ++.| ...+.+|.
T Consensus 54 tEPFWSvrv~~~gl~l~rpe~p~~a~s~~~~rl~~~~rvy~~~gg~~~~eL~l~pgsCtD-gMSd~~y~ 121 (149)
T COG3650 54 TEPFWSVRVSRKGLILSRPESPYIAPSTASGRLTDLVRVYRLRGGNSTNELVLRPGSCTD-GMSDTKYP 121 (149)
T ss_pred CCcceEEEEecCceEECCCCCCccccccccccCCCCceEEEecCCCceEEEEeccCcccc-cccccccc
Confidence 459999999973 333 334556677665 499999988753 3332 2 4555 45555654
No 255
>KOG3914|consensus
Probab=25.07 E-value=58 Score=25.67 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=19.2
Q ss_pred ceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 61 NFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 61 ~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
-+++|+|+.|. ..|++|-.|++||
T Consensus 153 ml~dVavS~D~----~~IitaDRDEkIR 176 (390)
T KOG3914|consen 153 MLLDVAVSPDD----QFIITADRDEKIR 176 (390)
T ss_pred hhheeeecCCC----CEEEEecCCceEE
Confidence 46788888883 4599999999987
No 256
>KOG0295|consensus
Probab=24.79 E-value=3.6e+02 Score=21.43 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=42.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..=+-+++|.| ..+..+.|..+ .+.||++....-++.+. ..|-|-+ +.|-....|++++|+.+
T Consensus 332 ghdnwVr~~af~p-----~Gkyi~ScaDDktlrvwdl~~~~cmk~~~------ah~hfvt---~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 332 GHDNWVRGVAFSP-----GGKYILSCADDKTLRVWDLKNLQCMKTLE------AHEHFVT---SLDFHKTAPYVVTGSVD 397 (406)
T ss_pred cccceeeeeEEcC-----CCeEEEEEecCCcEEEEEeccceeeeccC------CCcceeE---EEecCCCCceEEecccc
Confidence 3555667888877 35667788777 49999987753333332 2333433 34433457889999887
Q ss_pred cEe
Q psy8253 85 AVI 87 (88)
Q Consensus 85 G~I 87 (88)
-.+
T Consensus 398 qt~ 400 (406)
T KOG0295|consen 398 QTV 400 (406)
T ss_pred cee
Confidence 554
No 257
>PF11005 DUF2844: Protein of unknown function (DUF2844); InterPro: IPR021267 This bacterial family of proteins has no known function.
Probab=24.25 E-value=2.3e+02 Score=18.94 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee
Q psy8253 34 NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM 69 (88)
Q Consensus 34 ~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~ 69 (88)
.-.+|-+....++ ..++.|.+ .+-.+|.++|.=
T Consensus 30 ~~ytv~~~t~~~G-t~VrEY~~--~~G~VFAvaW~G 62 (132)
T PF11005_consen 30 AAYTVRETTDASG-TTVREYVT--PDGIVFAVAWQG 62 (132)
T ss_pred CceEEEEEEcCCC-cEEEEEEc--CCCcEEEEEecC
Confidence 3455655554333 68899986 688899999984
No 258
>KOG0289|consensus
Probab=24.07 E-value=3.5e+02 Score=22.07 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYA 54 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~ 54 (88)
|-.||-.++|.-...| .||...+. |.++++-... .++.|.
T Consensus 388 ht~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~---n~kt~~ 428 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLK---NFKTIQ 428 (506)
T ss_pred CCCceeEEEeccCceE-----EEEEecCCeEEEEEehhhc---ccceee
Confidence 6678888888654333 66666665 9999998874 445553
No 259
>KOG1408|consensus
Probab=23.90 E-value=5.1e+02 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=25.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG 44 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~ 44 (88)
-.++.+|+++..|- ..+.+|++.+| |.||.....
T Consensus 594 ~~ktTlYDm~Vdp~-----~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPT-----SKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred cccceEEEeeeCCC-----cceEEEEecccceEEEecccc
Confidence 45678899887664 44578888775 999998875
No 260
>KOG0281|consensus
Probab=23.64 E-value=85 Score=24.98 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=20.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG 44 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~ 44 (88)
-.|...+..|.|.. .+..+++|+| +.++...+.
T Consensus 317 vGHrAaVNvVdfd~-------kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 317 VGHRAAVNVVDFDD-------KYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hhhhhheeeecccc-------ceEEEecCCceEEEEeccce
Confidence 34666666666542 3566777776 777776663
No 261
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.51 E-value=2e+02 Score=19.17 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCC--CCCCEEEEeCCCe------EEEEEcCCC
Q psy8253 9 QPLFGAQFNHLLKD--DQPRIFATVGSNR------VSIYECPDG 44 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~--~~~~~fAtvG~~~------v~Vy~~~~~ 44 (88)
.|||-+.|+--.+. .++.-||.+...+ .||++|+..
T Consensus 67 ~~I~rI~fC~rG~~~t~e~~cFAft~s~~~se~~qcHVFrC~~~ 110 (125)
T cd01211 67 FSIVNIRFCIRGESSTSENNCFAFTFTHKISILFQCHVFRCSIA 110 (125)
T ss_pred EEEEEEEEEEecCCCCcccccEEEEeecCCceEEEEEEEecCCH
Confidence 46777777765332 4566788877664 677777753
No 262
>KOG4378|consensus
Probab=23.49 E-value=3.7e+02 Score=22.47 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecC
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDL 71 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~ 71 (88)
.|+-.|+|.|-. .-+.|=-.+++|.-|++-.- .|++++.++ ..++-++||.+.+
T Consensus 251 ~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-----~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAH-----DASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeec-----ccceeEEEeeecc
Confidence 577788887633 33445555668999998754 478888887 4459999999864
No 263
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=23.34 E-value=56 Score=22.31 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.9
Q ss_pred CCCeEEEEEecC
Q psy8253 8 GQPLFGAQFNHL 19 (88)
Q Consensus 8 ~~~~y~v~Fnp~ 19 (88)
..|+||++|.|=
T Consensus 164 ~~pi~gvQfHPE 175 (193)
T PRK08857 164 TLPIEAVQFHPE 175 (193)
T ss_pred CCCEEEEeeCCC
Confidence 349999999994
No 264
>KOG1274|consensus
Probab=23.32 E-value=1.9e+02 Score=25.36 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=25.2
Q ss_pred EEEEcCCCCCeeEEEEEEcCCCCCcee----EEEEeecCCCCceEEEEecCCcEe
Q psy8253 37 SIYECPDGGSIKLLQCYADPDIEENFY----TCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 37 ~Vy~~~~~~~~~~l~~~~d~d~~e~~y----~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
.||-|..++.+.+++.-.|++.+|.+. .++|..- ... .|++|..++.|
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~-~f~~~s~~~tv 78 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSN-HFLTGSEQNTV 78 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--ccc-ceEEeeccceE
Confidence 455555665666666665544444443 3444433 122 46777666654
No 265
>KOG0280|consensus
Probab=23.24 E-value=3.6e+02 Score=20.90 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=37.3
Q ss_pred eCCCeEEEEEcCCCC--CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 31 VGSNRVSIYECPDGG--SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 31 vG~~~v~Vy~~~~~~--~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
|=.++++.|.+.... ++..||.. | ....+..-|+.-+.++.-.|+.|-.+|.|
T Consensus 43 vR~Gkl~Lys~~d~~~~~l~~~q~~---d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i 97 (339)
T KOG0280|consen 43 VRSGKLHLYSLEDMKLSPLDTLQCT---D-TSTEFDMLWRIRETDGDFNLLDAHARGQI 97 (339)
T ss_pred eeccceEEEeecccccCccceeeee---c-ccccceeeeeeccCCccceeeeccccceE
Confidence 445668888888764 34556655 2 44567899999887787678888777766
No 266
>KOG2139|consensus
Probab=23.11 E-value=4e+02 Score=21.35 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=45.8
Q ss_pred CcccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCe---------eEEEEEEcCCCCCceeEEEEeec
Q psy8253 1 CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSI---------KLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 1 ~~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~---------~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
|.||.....++-+++|-|.-. ..||+.--..|+|.......+. ..+|..+|+.+ --+-+..|..|
T Consensus 133 t~Lks~sQrnvtclawRPlsa----selavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 133 TKLKSVSQRNVTCLAWRPLSA----SELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred ceecchhhcceeEEEeccCCc----ceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC
Confidence 357777888999999999763 2677777778999988764332 12355666555 55778889887
No 267
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=23.04 E-value=55 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=11.8
Q ss_pred EEEcCCCCCceeEEEEee
Q psy8253 52 CYADPDIEENFYTCAWSM 69 (88)
Q Consensus 52 ~~~d~d~~e~~y~~aWs~ 69 (88)
+|.| +..-.-|++-||.
T Consensus 36 AF~~-~~~L~AYA~RWSP 52 (315)
T PF11312_consen 36 AFGD-EEKLEAYAARWSP 52 (315)
T ss_pred HhCC-hhhhhhheeccCH
Confidence 4444 4556679999998
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=22.98 E-value=3.2e+02 Score=21.09 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=12.3
Q ss_pred eEEEEeecCCCCceEEEEecCCc
Q psy8253 63 YTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 63 y~~aWs~d~~~~~plLa~aG~~G 85 (88)
...+|+.| |+.++.+...+|
T Consensus 265 ~~~~wSPD---G~~La~~~~~~g 284 (448)
T PRK04792 265 GAPRFSPD---GKKLALVLSKDG 284 (448)
T ss_pred CCeeECCC---CCEEEEEEeCCC
Confidence 46789877 456555555444
No 269
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=21.90 E-value=1e+02 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC
Q psy8253 12 FGAQFNHLLKDDQPRIFATVGSNRVSIYECPD 43 (88)
Q Consensus 12 y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~ 43 (88)
|||.+.|--+....++..-|+-..|.||+-..
T Consensus 2 YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~ 33 (92)
T cd00836 2 YGVDLHPVKDKKGTELLLGVTAEGILVYDDGT 33 (92)
T ss_pred CCeeeEEEECCCCCeEEEEEeCCCcEEecCCC
Confidence 78888887666667888888889999998654
No 270
>KOG0278|consensus
Probab=21.84 E-value=2e+02 Score=22.01 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=31.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEEN 61 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~ 61 (88)
.|-.|+-+|+|+|-- .+.|+=+.+ .|.+++..+...-.+...-.++|..|+
T Consensus 265 gh~gpVhcVrFSPdG-----E~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDG-----ELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred CCCCceEEEEECCCC-----ceeeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 355699999999944 235554444 488888888755444444444444443
No 271
>KOG1262|consensus
Probab=20.98 E-value=1e+02 Score=24.91 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecC
Q psy8253 36 VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDL 71 (88)
Q Consensus 36 v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~ 71 (88)
++-|++...++ ++++.+.|.+..+-||++-||.-+
T Consensus 180 ~~aYEvVladG-elv~~t~dne~sdLfyaiPWSqGT 214 (543)
T KOG1262|consen 180 CTAYEVVLADG-ELVRVTPDNEHSDLFYAIPWSQGT 214 (543)
T ss_pred hheeEEEecCC-eEEEecCCcccCceEEEcccccCc
Confidence 34456554333 778888887788999999999873
No 272
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=20.90 E-value=65 Score=19.88 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.6
Q ss_pred cCCCCeEEEEEecCCC
Q psy8253 6 DHGQPLFGAQFNHLLK 21 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~ 21 (88)
..+..+-+++|.||.+
T Consensus 7 ~~~~~v~~~~F~PfED 22 (80)
T PF08149_consen 7 KPGSPVESLRFCPFED 22 (80)
T ss_pred CCCCeeeeeEEechHH
Confidence 5677899999999975
No 273
>KOG0643|consensus
Probab=20.55 E-value=4e+02 Score=20.46 Aligned_cols=70 Identities=14% Similarity=0.333 Sum_probs=45.0
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+-|..||--++||- +.+++-+|+++. +.|+.-..+ +.|-.|. .+.-.+ ||.|.+.....|++|+
T Consensus 6 l~GHERplTqiKyN~-----eGDLlFscaKD~~~~vw~s~nG---erlGty~--GHtGav----W~~Did~~s~~liTGS 71 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR-----EGDLLFSCAKDSTPTVWYSLNG---ERLGTYD--GHTGAV----WCCDIDWDSKHLITGS 71 (327)
T ss_pred cccCccccceEEecC-----CCcEEEEecCCCCceEEEecCC---ceeeeec--CCCceE----EEEEecCCcceeeecc
Confidence 466888999999885 456777888886 666665444 5666663 345544 5555433345577777
Q ss_pred CCcEe
Q psy8253 83 SRAVI 87 (88)
Q Consensus 83 ~~G~I 87 (88)
.|-.+
T Consensus 72 AD~t~ 76 (327)
T KOG0643|consen 72 ADQTA 76 (327)
T ss_pred cccee
Confidence 66554
No 274
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=20.33 E-value=73 Score=21.70 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=9.8
Q ss_pred CCCeEEEEEecC
Q psy8253 8 GQPLFGAQFNHL 19 (88)
Q Consensus 8 ~~~~y~v~Fnp~ 19 (88)
..++||++|-|=
T Consensus 160 ~~~i~gvQfHPE 171 (188)
T TIGR00566 160 DLPLEGVQFHPE 171 (188)
T ss_pred CCCEEEEEeCCC
Confidence 348999999994
Done!