Query psy8253
Match_columns 88
No_of_seqs 103 out of 153
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k26_A Polycomb protein EED; W 99.3 2.6E-11 8.8E-16 83.9 11.2 87 2-88 12-98 (366)
2 4aow_A Guanine nucleotide-bind 98.4 3E-06 1E-10 57.9 9.8 74 5-88 35-111 (340)
3 4h5i_A Guanine nucleotide-exch 98.3 2.9E-06 1E-10 60.9 9.1 71 5-88 266-337 (365)
4 3f3f_A Nucleoporin SEH1; struc 98.3 5E-06 1.7E-10 56.0 9.7 78 2-88 5-84 (351)
5 3vu4_A KMHSV2; beta-propeller 98.3 4.5E-06 1.5E-10 59.5 9.9 73 4-88 191-265 (355)
6 2pm7_B Protein transport prote 98.3 3.3E-06 1.1E-10 58.5 8.2 78 5-88 201-279 (297)
7 4gqb_B Methylosome protein 50; 98.3 3.6E-06 1.2E-10 60.4 7.9 72 4-88 253-325 (344)
8 2hes_X YDR267CP; beta-propelle 98.3 7E-06 2.4E-10 57.7 9.1 74 4-88 103-178 (330)
9 2pm7_B Protein transport prote 98.2 7.9E-06 2.7E-10 56.5 8.4 76 3-88 4-80 (297)
10 1gxr_A ESG1, transducin-like e 98.2 9.2E-06 3.1E-10 55.1 8.5 74 6-88 49-122 (337)
11 2hes_X YDR267CP; beta-propelle 98.2 1.2E-05 4.1E-10 56.5 9.3 73 4-88 10-83 (330)
12 3fm0_A Protein CIAO1; WDR39,SG 98.2 1.3E-05 4.4E-10 56.6 9.1 74 4-88 101-175 (345)
13 3ow8_A WD repeat-containing pr 98.2 1.5E-05 5.1E-10 56.1 9.3 77 4-88 28-105 (321)
14 4gq1_A NUP37; propeller, trans 98.2 3.9E-06 1.3E-10 60.5 6.3 77 4-88 132-212 (393)
15 1yfq_A Cell cycle arrest prote 98.1 2.1E-05 7.1E-10 53.9 9.4 76 3-88 6-82 (342)
16 3i2n_A WD repeat-containing pr 98.1 9.6E-06 3.3E-10 55.6 7.6 76 3-88 13-93 (357)
17 3jrp_A Fusion protein of prote 98.1 2E-05 6.9E-10 54.3 8.8 76 3-88 6-82 (379)
18 4g56_B MGC81050 protein; prote 98.1 1.3E-05 4.5E-10 57.2 8.1 72 4-88 265-337 (357)
19 3bg1_A Protein SEC13 homolog; 98.1 8.4E-06 2.9E-10 57.0 6.9 76 3-88 8-84 (316)
20 3mmy_A MRNA export factor; mRN 98.1 3.3E-05 1.1E-09 52.8 9.7 77 3-88 34-111 (368)
21 3bg1_A Protein SEC13 homolog; 98.1 1.6E-05 5.5E-10 55.5 8.3 74 5-88 209-287 (316)
22 1sq9_A Antiviral protein SKI8; 98.1 2.7E-05 9.2E-10 54.5 9.2 77 3-88 11-94 (397)
23 3fm0_A Protein CIAO1; WDR39,SG 98.1 3.1E-05 1E-09 54.7 9.4 73 4-88 57-130 (345)
24 1got_B GT-beta; complex (GTP-b 98.1 4E-05 1.4E-09 53.9 9.7 72 5-88 223-295 (340)
25 3ow8_A WD repeat-containing pr 98.1 3E-05 1E-09 54.5 9.1 70 5-88 245-315 (321)
26 1nr0_A Actin interacting prote 98.1 2.3E-05 8E-10 59.6 9.0 73 4-88 186-264 (611)
27 1vyh_C Platelet-activating fac 98.0 2.3E-05 7.8E-10 56.8 8.0 71 4-88 104-175 (410)
28 4ery_A WD repeat-containing pr 98.0 4.9E-05 1.7E-09 52.1 9.2 71 4-88 19-90 (312)
29 2ymu_A WD-40 repeat protein; u 98.0 2.7E-05 9.2E-10 57.4 8.1 69 5-88 13-82 (577)
30 2aq5_A Coronin-1A; WD40 repeat 98.0 5.5E-05 1.9E-09 53.8 9.5 75 5-88 78-157 (402)
31 4gqb_B Methylosome protein 50; 98.0 6.4E-05 2.2E-09 53.8 9.5 73 6-88 80-152 (344)
32 2ynn_A Coatomer subunit beta'; 98.0 7.9E-05 2.7E-09 51.6 9.7 71 4-88 9-80 (304)
33 2xzm_R RACK1; ribosome, transl 98.0 6.2E-05 2.1E-09 52.8 9.1 70 5-88 73-143 (343)
34 3zwl_B Eukaryotic translation 97.9 6.9E-05 2.3E-09 51.2 8.9 71 4-88 28-99 (369)
35 1sq9_A Antiviral protein SKI8; 97.9 0.00014 4.8E-09 50.8 10.5 74 7-88 290-389 (397)
36 3frx_A Guanine nucleotide-bind 97.9 9E-05 3.1E-09 51.7 9.4 71 4-88 61-132 (319)
37 3mmy_A MRNA export factor; mRN 97.9 0.00013 4.3E-09 49.9 10.0 72 4-88 82-154 (368)
38 1k8k_C P40, ARP2/3 complex 41 97.9 8.4E-05 2.9E-09 51.2 9.0 74 3-88 3-77 (372)
39 3vl1_A 26S proteasome regulato 97.9 0.0001 3.5E-09 52.0 9.7 71 4-88 135-206 (420)
40 3frx_A Guanine nucleotide-bind 97.9 6.6E-05 2.3E-09 52.4 8.5 75 4-88 13-90 (319)
41 2xzm_R RACK1; ribosome, transl 97.9 0.00014 4.8E-09 51.0 10.2 79 4-88 17-101 (343)
42 3gre_A Serine/threonine-protei 97.9 3.1E-05 1.1E-09 55.3 6.8 74 4-88 59-136 (437)
43 3jrp_A Fusion protein of prote 97.9 5.5E-05 1.9E-09 52.1 7.8 78 5-88 203-281 (379)
44 3f3f_A Nucleoporin SEH1; struc 97.9 0.00019 6.4E-09 48.2 10.3 79 6-88 165-243 (351)
45 1got_B GT-beta; complex (GTP-b 97.9 0.00012 4.2E-09 51.4 9.7 71 4-88 51-122 (340)
46 2xyi_A Probable histone-bindin 97.9 8.9E-05 3E-09 53.8 9.2 75 5-88 228-303 (430)
47 2aq5_A Coronin-1A; WD40 repeat 97.9 0.00011 3.7E-09 52.3 9.1 73 5-88 128-201 (402)
48 1erj_A Transcriptional repress 97.9 7.9E-05 2.7E-09 53.4 8.4 71 6-88 62-148 (393)
49 2ynn_A Coatomer subunit beta'; 97.8 0.00014 4.8E-09 50.3 9.3 75 4-88 136-211 (304)
50 3i2n_A WD repeat-containing pr 97.8 6.2E-05 2.1E-09 51.5 7.4 79 5-88 206-285 (357)
51 3iz6_a 40S ribosomal protein R 97.8 4.9E-05 1.7E-09 54.3 7.1 71 4-88 62-133 (380)
52 3dw8_B Serine/threonine-protei 97.8 0.00012 4.2E-09 51.9 9.0 73 7-88 27-120 (447)
53 3lrv_A PRE-mRNA-splicing facto 97.8 9.4E-05 3.2E-09 51.8 8.3 72 6-88 123-195 (343)
54 4ery_A WD repeat-containing pr 97.8 0.00016 5.4E-09 49.5 9.3 71 4-88 61-132 (312)
55 2oit_A Nucleoporin 214KDA; NH2 97.8 6.3E-05 2.1E-09 55.7 7.6 71 5-88 146-217 (434)
56 4e54_B DNA damage-binding prot 97.8 5.4E-05 1.8E-09 54.9 7.0 73 6-88 117-190 (435)
57 1k8k_C P40, ARP2/3 complex 41 97.8 0.00017 5.8E-09 49.7 9.2 72 5-88 49-121 (372)
58 3dw8_B Serine/threonine-protei 97.8 8.4E-05 2.9E-09 52.7 7.8 75 4-88 173-252 (447)
59 4ggc_A P55CDC, cell division c 97.8 0.00018 6.1E-09 48.5 8.9 71 5-88 237-309 (318)
60 2pm9_A Protein WEB1, protein t 97.8 0.00011 3.9E-09 51.4 8.1 71 6-88 260-331 (416)
61 3k26_A Polycomb protein EED; W 97.8 0.00021 7.2E-09 48.9 9.2 74 6-88 67-141 (366)
62 3dwl_C Actin-related protein 2 97.8 0.00015 5.1E-09 50.6 8.5 70 7-88 145-230 (377)
63 2pbi_B Guanine nucleotide-bind 97.8 0.0002 7E-09 50.8 9.4 73 4-88 236-309 (354)
64 3iz6_a 40S ribosomal protein R 97.8 0.00018 6.1E-09 51.4 8.9 73 4-88 245-323 (380)
65 2pbi_B Guanine nucleotide-bind 97.8 0.00024 8.2E-09 50.4 9.4 71 4-88 60-131 (354)
66 3mkq_A Coatomer beta'-subunit; 97.7 0.00022 7.6E-09 54.5 9.7 71 4-88 9-80 (814)
67 3ei3_B DNA damage-binding prot 97.7 0.0002 6.9E-09 50.2 8.8 74 5-88 70-144 (383)
68 4ggc_A P55CDC, cell division c 97.7 0.00016 5.4E-09 48.8 7.9 57 25-88 36-92 (318)
69 1nr0_A Actin interacting prote 97.7 0.00018 6.1E-09 54.7 8.9 71 5-88 144-215 (611)
70 4g56_B MGC81050 protein; prote 97.7 7.4E-05 2.5E-09 53.2 6.4 74 5-88 91-164 (357)
71 4e54_B DNA damage-binding prot 97.7 0.0002 6.9E-09 51.8 8.7 72 5-88 161-234 (435)
72 3dm0_A Maltose-binding peripla 97.7 0.00016 5.5E-09 55.5 8.5 75 4-88 378-455 (694)
73 1gxr_A ESG1, transducin-like e 97.7 0.00028 9.6E-09 47.7 8.8 69 5-88 262-331 (337)
74 3dwl_C Actin-related protein 2 97.7 4.8E-05 1.6E-09 53.1 5.0 74 5-88 97-171 (377)
75 4a11_B DNA excision repair pro 97.7 0.00036 1.2E-08 48.3 9.2 79 3-88 38-125 (408)
76 1vyh_C Platelet-activating fac 97.7 0.0002 6.9E-09 51.8 8.2 70 5-88 335-405 (410)
77 3odt_A Protein DOA1; ubiquitin 97.7 0.0004 1.4E-08 46.6 9.0 70 4-88 14-84 (313)
78 4aez_A CDC20, WD repeat-contai 97.6 0.00035 1.2E-08 49.8 8.8 71 6-88 301-374 (401)
79 4aow_A Guanine nucleotide-bind 97.6 0.00065 2.2E-08 46.1 9.6 72 5-88 168-240 (340)
80 2ymu_A WD-40 repeat protein; u 97.6 0.0002 7E-09 52.6 7.5 69 5-88 505-574 (577)
81 3dm0_A Maltose-binding peripla 97.6 0.00037 1.3E-08 53.4 8.9 70 5-88 427-497 (694)
82 3gre_A Serine/threonine-protei 97.6 0.00057 1.9E-08 48.7 9.2 73 7-88 213-286 (437)
83 1r5m_A SIR4-interacting protei 97.6 0.00019 6.6E-09 49.9 6.6 74 7-88 44-133 (425)
84 4gga_A P55CDC, cell division c 97.6 0.00027 9.1E-09 50.9 7.5 59 23-88 114-172 (420)
85 3jro_A Fusion protein of prote 97.6 0.00029 9.9E-09 55.2 8.2 76 3-88 4-80 (753)
86 3sfz_A APAF-1, apoptotic pepti 97.6 0.00043 1.5E-08 55.7 9.2 70 5-88 612-682 (1249)
87 2xyi_A Probable histone-bindin 97.5 0.00036 1.2E-08 50.5 8.0 75 5-88 318-404 (430)
88 3ei3_B DNA damage-binding prot 97.5 0.00067 2.3E-08 47.5 9.2 71 6-88 116-188 (383)
89 1pgu_A Actin interacting prote 97.5 0.00044 1.5E-08 50.7 8.2 73 5-88 15-91 (615)
90 4aez_A CDC20, WD repeat-contai 97.5 0.00084 2.9E-08 47.8 9.2 71 4-88 255-330 (401)
91 3lrv_A PRE-mRNA-splicing facto 97.4 0.0003 1E-08 49.1 6.3 74 6-88 212-286 (343)
92 2j04_A TAU60, YPL007P, hypothe 97.4 0.00039 1.4E-08 55.0 7.5 67 7-88 84-154 (588)
93 2pm9_A Protein WEB1, protein t 97.4 0.0016 5.6E-08 45.5 9.9 74 5-88 162-243 (416)
94 2vdu_B TRNA (guanine-N(7)-)-me 97.4 0.00071 2.4E-08 49.1 8.3 73 8-88 4-128 (450)
95 1erj_A Transcriptional repress 97.4 0.001 3.5E-08 47.6 9.0 71 4-88 161-232 (393)
96 4a11_B DNA excision repair pro 97.4 0.0011 3.9E-08 45.8 9.0 72 6-88 97-169 (408)
97 1pgu_A Actin interacting prote 97.4 0.00082 2.8E-08 49.3 8.5 75 5-88 485-566 (615)
98 4gga_A P55CDC, cell division c 97.4 0.0011 3.7E-08 47.7 9.0 69 7-88 319-389 (420)
99 3mkq_A Coatomer beta'-subunit; 97.4 0.0011 3.7E-08 50.7 9.3 70 5-88 52-122 (814)
100 2oaj_A Protein SNI1; WD40 repe 97.4 0.001 3.5E-08 53.6 9.5 71 6-88 486-599 (902)
101 3jro_A Fusion protein of prote 97.4 0.0012 4.1E-08 51.7 9.6 77 4-88 49-126 (753)
102 3zwl_B Eukaryotic translation 97.4 0.0022 7.4E-08 43.6 9.7 69 5-88 71-145 (369)
103 3sfz_A APAF-1, apoptotic pepti 97.3 0.0014 4.9E-08 52.7 9.8 72 5-88 654-726 (1249)
104 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.0014 4.7E-08 47.5 8.9 71 7-88 101-174 (450)
105 3odt_A Protein DOA1; ubiquitin 97.3 0.0019 6.5E-08 43.2 8.8 68 5-88 222-290 (313)
106 4h5i_A Guanine nucleotide-exch 97.3 0.0018 6.1E-08 46.2 8.6 68 6-85 174-241 (365)
107 1r5m_A SIR4-interacting protei 97.2 0.0036 1.2E-07 43.4 9.8 69 5-88 286-355 (425)
108 3v7d_B Cell division control p 97.2 0.0035 1.2E-07 44.9 9.8 71 5-88 159-230 (464)
109 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.0018 6.1E-08 46.6 7.5 70 6-86 360-430 (445)
110 2j04_B YDR362CP, TAU91; beta p 97.1 0.003 1E-07 48.2 8.8 76 6-88 205-290 (524)
111 2oaj_A Protein SNI1; WD40 repe 97.1 0.0058 2E-07 49.2 10.8 75 5-88 572-655 (902)
112 3vl1_A 26S proteasome regulato 97.1 0.0073 2.5E-07 42.4 10.1 77 5-88 223-316 (420)
113 3v7d_B Cell division control p 97.0 0.007 2.4E-07 43.3 9.6 68 5-88 307-375 (464)
114 2j04_B YDR362CP, TAU91; beta p 97.0 0.0023 7.8E-08 48.9 7.4 65 10-88 357-422 (524)
115 2oit_A Nucleoporin 214KDA; NH2 96.9 0.0015 5E-08 48.3 5.1 72 7-88 91-175 (434)
116 1yfq_A Cell cycle arrest prote 96.7 0.016 5.6E-07 39.2 9.3 70 7-88 149-219 (342)
117 3vu4_A KMHSV2; beta-propeller 96.7 0.011 3.7E-07 41.8 8.6 69 5-88 16-84 (355)
118 1l0q_A Surface layer protein; 96.5 0.03 1E-06 38.9 9.7 68 8-88 73-141 (391)
119 2j04_A TAU60, YPL007P, hypothe 96.4 0.015 5.1E-07 46.1 8.4 67 4-86 222-290 (588)
120 1p22_A F-BOX/WD-repeat protein 96.4 0.023 7.7E-07 40.8 8.7 69 5-88 210-279 (435)
121 1p22_A F-BOX/WD-repeat protein 96.4 0.021 7.1E-07 41.0 8.4 66 5-88 130-196 (435)
122 1l0q_A Surface layer protein; 96.4 0.04 1.4E-06 38.3 9.5 69 7-88 198-269 (391)
123 2ovr_B FBW7, F-BOX/WD repeat p 96.2 0.05 1.7E-06 38.9 9.7 66 5-88 156-222 (445)
124 3bws_A Protein LP49; two-domai 96.1 0.061 2.1E-06 37.8 9.4 70 6-88 167-237 (433)
125 4gq1_A NUP37; propeller, trans 95.9 0.042 1.4E-06 39.2 8.0 54 25-87 328-383 (393)
126 2w18_A PALB2, fancn, partner a 95.9 0.05 1.7E-06 40.6 8.5 53 27-88 297-351 (356)
127 3bws_A Protein LP49; two-domai 95.7 0.12 4E-06 36.3 9.7 69 7-88 343-426 (433)
128 1pby_B Quinohemoprotein amine 95.5 0.11 3.6E-06 34.8 8.4 65 7-87 239-303 (337)
129 2hqs_A Protein TOLB; TOLB, PAL 95.4 0.15 5.2E-06 36.8 9.4 67 5-85 175-245 (415)
130 1ri6_A Putative isomerase YBHE 95.3 0.18 6.1E-06 33.8 9.0 71 9-87 129-202 (343)
131 3hfq_A Uncharacterized protein 95.2 0.3 1E-05 33.4 10.1 73 7-87 84-164 (347)
132 1ri6_A Putative isomerase YBHE 95.2 0.17 5.9E-06 33.9 8.6 71 7-87 36-108 (343)
133 1jof_A Carboxy-CIS,CIS-muconat 95.1 0.52 1.8E-05 33.0 11.2 60 7-70 143-203 (365)
134 3hfq_A Uncharacterized protein 94.9 0.54 1.8E-05 32.1 10.7 70 9-87 141-211 (347)
135 2ojh_A Uncharacterized protein 94.8 0.074 2.5E-06 34.6 5.8 64 6-82 39-103 (297)
136 3scy_A Hypothetical bacterial 94.3 0.73 2.5E-05 31.7 10.3 69 9-87 259-330 (361)
137 2w18_A PALB2, fancn, partner a 94.2 0.24 8.2E-06 36.9 8.0 77 7-88 177-263 (356)
138 1jmx_B Amine dehydrogenase; ox 94.0 0.33 1.1E-05 32.6 7.8 64 9-87 255-318 (349)
139 3u4y_A Uncharacterized protein 93.2 1.2 4.2E-05 29.8 9.7 71 9-87 128-200 (331)
140 3u4y_A Uncharacterized protein 93.0 0.59 2E-05 31.4 7.8 66 6-85 81-150 (331)
141 2ojh_A Uncharacterized protein 92.2 0.37 1.3E-05 31.1 5.7 67 6-83 214-292 (297)
142 3scy_A Hypothetical bacterial 91.0 2.7 9.1E-05 28.8 10.3 70 10-87 156-235 (361)
143 3kvp_A Uncharacterized protein 90.9 0.7 2.4E-05 27.1 5.2 32 24-55 28-60 (72)
144 2hqs_A Protein TOLB; TOLB, PAL 90.7 2.2 7.5E-05 30.6 9.0 64 5-83 219-286 (415)
145 3vgz_A Uncharacterized protein 90.6 2.7 9.1E-05 28.2 9.5 71 7-87 183-255 (353)
146 3vgz_A Uncharacterized protein 89.3 3.5 0.00012 27.6 9.6 66 8-87 230-296 (353)
147 1xip_A Nucleoporin NUP159; bet 89.2 1.7 5.8E-05 32.2 7.5 61 6-88 124-185 (388)
148 2z3z_A Dipeptidyl aminopeptida 88.3 1.4 4.9E-05 33.2 6.6 34 34-70 235-268 (706)
149 1jmx_B Amine dehydrogenase; ox 88.2 2.5 8.6E-05 28.1 7.3 57 24-87 10-67 (349)
150 3azo_A Aminopeptidase; POP fam 87.7 2.4 8.2E-05 31.6 7.5 68 8-85 187-263 (662)
151 1nir_A Nitrite reductase; hemo 87.2 7.3 0.00025 29.3 10.0 74 7-87 220-304 (543)
152 2ecf_A Dipeptidyl peptidase IV 86.3 2 7E-05 32.4 6.5 34 6-44 149-182 (741)
153 3o4h_A Acylamino-acid-releasin 84.7 1.4 4.7E-05 32.7 4.8 64 4-82 17-82 (582)
154 1pby_B Quinohemoprotein amine 84.3 4.4 0.00015 26.7 6.8 55 27-87 3-58 (337)
155 2mad_H Methylamine dehydrogena 83.3 6.9 0.00024 28.0 7.9 55 24-87 278-343 (373)
156 1k32_A Tricorn protease; prote 83.0 4.6 0.00016 32.4 7.5 64 6-83 376-440 (1045)
157 2ecf_A Dipeptidyl peptidase IV 82.5 4 0.00014 30.8 6.6 32 8-44 36-74 (741)
158 2z3z_A Dipeptidyl aminopeptida 81.7 6.3 0.00021 29.6 7.4 72 6-86 255-334 (706)
159 1k32_A Tricorn protease; prote 81.0 5.8 0.0002 31.9 7.4 65 5-84 49-127 (1045)
160 1nir_A Nitrite reductase; hemo 80.3 14 0.00047 27.8 8.9 52 10-69 180-231 (543)
161 1xfd_A DIP, dipeptidyl aminope 79.0 3.5 0.00012 31.0 5.2 61 10-82 62-132 (723)
162 3o4h_A Acylamino-acid-releasin 77.7 4 0.00014 30.1 5.1 70 5-88 191-270 (582)
163 1xfd_A DIP, dipeptidyl aminope 73.1 5 0.00017 30.1 4.7 29 11-44 116-144 (723)
164 2oiz_A Aromatic amine dehydrog 72.0 21 0.00071 25.0 7.5 43 33-87 285-327 (361)
165 1q7f_A NHL, brain tumor CG1071 67.7 23 0.00077 23.1 9.1 66 9-88 207-274 (286)
166 4a5s_A Dipeptidyl peptidase 4 64.4 11 0.00037 29.0 5.0 67 8-84 16-82 (740)
167 2xdw_A Prolyl endopeptidase; a 63.8 32 0.0011 26.1 7.6 55 5-70 121-181 (710)
168 3fvz_A Peptidyl-glycine alpha- 62.1 34 0.0012 23.2 9.5 75 6-88 238-316 (329)
169 1xip_A Nucleoporin NUP159; bet 61.8 45 0.0015 24.5 8.2 63 6-87 86-148 (388)
170 1z68_A Fibroblast activation p 60.4 8.6 0.00029 29.0 3.8 31 9-44 110-140 (719)
171 1z68_A Fibroblast activation p 55.9 10 0.00035 28.6 3.5 59 13-83 20-79 (719)
172 4a5s_A Dipeptidyl peptidase 4 47.7 30 0.001 26.5 5.0 34 6-44 109-142 (740)
173 2gop_A Trilobed protease; beta 47.7 58 0.002 21.5 7.9 50 11-70 61-114 (347)
174 1jof_A Carboxy-CIS,CIS-muconat 46.0 68 0.0023 21.9 8.9 37 33-70 118-155 (365)
175 3c75_H MADH, methylamine dehyd 45.8 28 0.00094 25.9 4.4 55 24-87 330-395 (426)
176 1q7f_A NHL, brain tumor CG1071 43.9 63 0.0022 20.8 9.0 66 9-87 121-187 (286)
177 2xbg_A YCF48-like protein; pho 42.5 80 0.0027 21.6 6.5 24 59-87 292-315 (327)
178 3sjl_D Methylamine dehydrogena 41.9 90 0.0031 22.9 6.7 53 9-70 331-384 (386)
179 3e5z_A Putative gluconolactona 40.2 75 0.0026 20.7 7.3 52 26-88 230-281 (296)
180 3g4e_A Regucalcin; six bladed 36.3 92 0.0032 20.6 7.5 38 26-68 212-249 (297)
181 4glq_A Methyl-accepting chemot 35.2 63 0.0022 20.3 4.4 26 31-56 27-52 (171)
182 4e04_A Bacteriophytochrome (li 34.9 53 0.0018 23.9 4.4 27 30-56 163-189 (327)
183 3fvz_A Peptidyl-glycine alpha- 34.8 1E+02 0.0035 20.7 8.9 52 11-69 198-250 (329)
184 3sjl_D Methylamine dehydrogena 33.8 86 0.0029 23.0 5.4 42 23-70 290-341 (386)
185 3c5m_A Oligogalacturonate lyas 33.0 38 0.0013 22.7 3.2 20 62-85 83-102 (396)
186 3s7o_A Bacteriophytochrome; bi 32.0 63 0.0021 23.7 4.4 26 31-56 182-207 (343)
187 2ofc_A Sclerotium rolfsii lect 31.6 1.1E+02 0.0037 19.9 5.1 45 35-87 6-54 (142)
188 2ool_A Sensor protein; bacteri 31.4 65 0.0022 23.4 4.4 27 30-56 176-202 (337)
189 3pe7_A Oligogalacturonate lyas 30.6 64 0.0022 21.6 4.1 52 25-85 47-102 (388)
190 3by7_A Uncharacterized protein 28.9 62 0.0021 19.8 3.3 36 7-43 42-77 (100)
191 4dxa_B KREV interaction trappe 28.6 88 0.003 21.9 4.6 44 8-54 217-268 (322)
192 1qks_A Cytochrome CD1 nitrite 27.4 2E+02 0.007 21.8 7.1 51 27-87 169-220 (567)
193 1mda_H Methylamine dehydrogena 25.2 1E+02 0.0035 22.1 4.5 54 25-87 276-339 (368)
194 2iwa_A Glutamine cyclotransfer 25.2 1.7E+02 0.0058 20.2 8.5 57 25-87 162-230 (266)
195 3no2_A Uncharacterized protein 24.6 1.6E+02 0.0054 19.6 9.1 63 10-86 38-100 (276)
196 3mbr_X Glutamine cyclotransfer 23.3 1.8E+02 0.0063 19.9 7.6 52 24-81 159-222 (243)
197 1jb0_D Photosystem 1 reaction 21.9 43 0.0015 21.6 1.7 13 58-70 22-34 (138)
198 3nol_A Glutamine cyclotransfer 21.6 2.1E+02 0.0072 19.9 7.8 51 25-81 182-243 (262)
199 2bkl_A Prolyl endopeptidase; m 21.3 2.7E+02 0.0091 21.0 6.5 34 36-70 204-237 (695)
200 2dsr_G Insulin-like growth fac 20.8 58 0.002 19.0 2.0 37 37-76 29-65 (82)
201 1y2t_A Lectin; ABL, mushroom, 20.5 1.6E+02 0.0056 19.0 4.3 45 35-87 5-53 (142)
No 1
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.31 E-value=2.6e-11 Score=83.86 Aligned_cols=87 Identities=63% Similarity=1.092 Sum_probs=76.4
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+++.|..+|++++|+|..+.+...++|+.+.+.|.||++..++.+..++.+.++.+++.+++++|+.+...+..+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 46778999999999999865566789999999999999999887889999998888899999999999965546789999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 92 ~~dg~i~ 98 (366)
T 3k26_A 92 GSRGIIR 98 (366)
T ss_dssp ETTCEEE
T ss_pred cCCCEEE
Confidence 9999885
No 2
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.40 E-value=3e-06 Score=57.91 Aligned_cols=74 Identities=7% Similarity=0.044 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.|..+|.+++|+|.. .+++||+|.+ .|.|+++..... ...++.+ ..+...+.+++|+.+ ..+|++|
T Consensus 35 ~GH~~~V~~v~~sp~~----~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~~~~s~d----g~~l~s~ 104 (340)
T 4aow_A 35 KGHNGWVTQIATTPQF----PDMILSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSDVVISSD----GQFALSG 104 (340)
T ss_dssp CCCSSCEEEEEECTTC----TTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEEEEECTT----SSEEEEE
T ss_pred CCccCCEEEEEEeCCC----CCEEEEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEEEEECCC----CCEEEEE
Confidence 5699999999999843 5789999987 599999987643 2334444 247888999999976 3569999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 105 ~~d~~i~ 111 (340)
T 4aow_A 105 SWDGTLR 111 (340)
T ss_dssp ETTSEEE
T ss_pred cccccce
Confidence 9999874
No 3
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=98.35 E-value=2.9e-06 Score=60.88 Aligned_cols=71 Identities=7% Similarity=0.091 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+| +.+++|+.+.+ .|.|++.... +.++.+.. .+...+++++|+.| ..+||+|+.
T Consensus 266 ~~~~~~V~~~~~Sp-----dg~~lasgs~D~~V~iwd~~~~---~~~~~~~~-gH~~~V~~v~fSpd----g~~laS~S~ 332 (365)
T 4h5i_A 266 TNRFKGITSMDVDM-----KGELAVLASNDNSIALVKLKDL---SMSKIFKQ-AHSFAITEVTISPD----STYVASVSA 332 (365)
T ss_dssp ESSCSCEEEEEECT-----TSCEEEEEETTSCEEEEETTTT---EEEEEETT-SSSSCEEEEEECTT----SCEEEEEET
T ss_pred cCCCCCeEeEEECC-----CCCceEEEcCCCEEEEEECCCC---cEEEEecC-cccCCEEEEEECCC----CCEEEEEeC
Confidence 46778999999998 35689988887 5999999875 67776633 47888999999987 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 333 D~tvr 337 (365)
T 4h5i_A 333 ANTIH 337 (365)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 99986
No 4
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.34 E-value=5e-06 Score=55.99 Aligned_cols=78 Identities=12% Similarity=0.260 Sum_probs=60.4
Q ss_pred cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
++.+.|..+|.+++|+| ..+.+|+.+.+ .|.||++.... ..++++.+. .+...+.+++|+.. ....+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--~d~~~l~ 75 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF-----YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASP--EYGRIIA 75 (351)
T ss_dssp CEECCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCG--GGCSEEE
T ss_pred ccCcccccceeEEEEcC-----CCCEEEEeeCCCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCC--CCCCEEE
Confidence 35578999999999998 24578888876 69999998754 346666665 47888999999974 1145799
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+|+.+|.|+
T Consensus 76 s~~~dg~v~ 84 (351)
T 3f3f_A 76 SASYDKTVK 84 (351)
T ss_dssp EEETTSCEE
T ss_pred EEcCCCeEE
Confidence 999999875
No 5
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.34 E-value=4.5e-06 Score=59.46 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=58.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+.|..++.+++|+| +..++|+++.+. |.|+++... +.++.+....+...+++++|+.+ ..+|++|
T Consensus 191 ~~~h~~~v~~~~~s~-----~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~----~~~l~s~ 258 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNR-----KSDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTD----GSKLAVV 258 (355)
T ss_dssp ECCCSSCEEEEEECT-----TSSEEEEEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTT----SCEEEEE
T ss_pred EEccCCceEEEEECC-----CCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCC----CCEEEEE
Confidence 467899999999998 256899999885 999999876 56666653236788999999987 3569999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.||
T Consensus 259 s~d~~v~ 265 (355)
T 3vu4_A 259 SDKWTLH 265 (355)
T ss_dssp ETTCEEE
T ss_pred ECCCEEE
Confidence 9999885
No 6
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=98.30 E-value=3.3e-06 Score=58.45 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=56.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|... ..+++|+++.+ .|.|+++.........+..........+++++|+.+ ..+||+||.
T Consensus 201 ~~H~~~V~~v~~sp~~~--~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~las~~~ 274 (297)
T 2pm7_B 201 EGHSDWVRDVAWSPTVL--LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG 274 (297)
T ss_dssp CCCSSCEEEEEECCCCS--SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEET
T ss_pred cCCCCceEEEEECCCCC--CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC----CCEEEEEcC
Confidence 56889999999999642 35789999877 599999876432111122222345778999999987 346999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 275 D~~v~ 279 (297)
T 2pm7_B 275 DNKVT 279 (297)
T ss_dssp TSCEE
T ss_pred CCcEE
Confidence 99885
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.26 E-value=3.6e-06 Score=60.37 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=56.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|.. .+++|+++.+ .|.|++.... ++++. ..+...+++++|+.+ +..+|++||
T Consensus 253 ~~~h~~~v~~v~fsp~g----~~~lasgs~D~~i~vwd~~~~---~~~~~---~~H~~~V~~v~~sp~---~~~llas~s 319 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHS----VPFLASLSEDCSLAVLDSSLS---ELFRS---QAHRDFVRDATWSPL---NHSLLTTVG 319 (344)
T ss_dssp EECCSSCEEEEEECSSS----SCCEEEEETTSCEEEECTTCC---EEEEE---CCCSSCEEEEEECSS---STTEEEEEE
T ss_pred EcCCCCCEEEEEEccCC----CeEEEEEeCCCeEEEEECCCC---cEEEE---cCCCCCEEEEEEeCC---CCeEEEEEc
Confidence 35688999999999842 4678988876 5999988764 44443 367889999999977 456799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||.|+
T Consensus 320 ~D~~v~ 325 (344)
T 4gqb_B 320 WDHQVV 325 (344)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999885
No 8
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7e-06 Score=57.68 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=54.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+.|..++.+++|+|- .+.+|+++.+ .|.|+++...+ ..+.++.+. .+...+.+++|+.+ ..+|++|
T Consensus 103 ~~~h~~~V~~v~~sp~-----g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~----~~~l~s~ 171 (330)
T 2hes_X 103 IEGHENEVKGVAWSND-----GYYLATCSRDKSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPS----EALLASS 171 (330)
T ss_dssp EC----CEEEEEECTT-----SCEEEEEETTSCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSS----SSEEEEE
T ss_pred EcCCCCcEEEEEECCC-----CCEEEEEeCCCEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCC----CCEEEEE
Confidence 3578899999999983 5689998876 69999996543 356666653 46788999999986 3479999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.+|.||
T Consensus 172 s~D~~i~ 178 (330)
T 2hes_X 172 SYDDTVR 178 (330)
T ss_dssp ETTSCEE
T ss_pred cCCCeEE
Confidence 9999885
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=98.20 E-value=7.9e-06 Score=56.50 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=57.3
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..++.+++|+|. .+.+|+.|.+ .|.|+++.... .+.++.+. .+...+++++|+.+. ...+||+|
T Consensus 4 ~~~~h~~~V~~~~~s~~-----g~~las~s~D~~v~iw~~~~~~-~~~~~~l~--gH~~~V~~v~~s~~~--~g~~l~s~ 73 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYY-----GKRMATCSSDKTIKIFEVEGET-HKLIDTLT--GHEGPVWRVDWAHPK--FGTILASC 73 (297)
T ss_dssp ECCSCSSCEEEEEECTT-----SSEEEEEETTSCEEEEEBCSSC-BCCCEEEC--CCSSCEEEEEECCGG--GCSEEEEE
T ss_pred eccCCcCceEEEEECCC-----CCEEEEEeCCCEEEEEecCCCC-cEEEEEEc--cccCCeEEEEecCCC--cCCEEEEE
Confidence 45679999999999974 4578888877 59999997542 23444443 478889999998652 23579999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.||.||
T Consensus 74 s~D~~v~ 80 (297)
T 2pm7_B 74 SYDGKVM 80 (297)
T ss_dssp ETTTEEE
T ss_pred cCCCEEE
Confidence 9999985
No 10
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.20 E-value=9.2e-06 Score=55.13 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=59.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.|..++.+++|+| ..+.+|+.+.+.|.||++...+....++.+....+...+.+++|+.+ ..+|++|+.+|
T Consensus 49 ~h~~~v~~~~~~~-----~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~ 119 (337)
T 1gxr_A 49 NHGEVVCAVTISN-----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLIVGGEAS 119 (337)
T ss_dssp CCSSCCCEEEECS-----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SSEEEEEESSS
T ss_pred cCCCceEEEEEec-----CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC----CCEEEEEcCCC
Confidence 5888999999987 35678888888999999998765555666655567889999999986 35699999999
Q ss_pred EeC
Q psy8253 86 VIR 88 (88)
Q Consensus 86 ~Ir 88 (88)
.|+
T Consensus 120 ~i~ 122 (337)
T 1gxr_A 120 TLS 122 (337)
T ss_dssp EEE
T ss_pred cEE
Confidence 874
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.2e-05 Score=56.47 Aligned_cols=73 Identities=14% Similarity=0.267 Sum_probs=56.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++++++|+|- ++|+.|.+ .|.|+++..+ ..++++.+....+...+.+++|+.+ ..+||+|+
T Consensus 10 ~~~h~~~v~~~~~s~~-------~las~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las~s 77 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG-------ILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPH----TSLLAAGS 77 (330)
T ss_dssp EECCSSCEEEEEEETT-------EEEEEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTT----SSEEEEEE
T ss_pred eccCCCceeeeccCCC-------EEEEEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCC----CCEEEEEe
Confidence 3579999999999862 79999877 5999999764 3355555533337889999999987 35799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 78 ~D~~v~ 83 (330)
T 2hes_X 78 FDSTVS 83 (330)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999875
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=98.17 E-value=1.3e-05 Score=56.63 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=59.1
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+| ..+.+|+++.+ .|.|+++......+.++.+. .+...+.+++|+.+ ..+|++|+
T Consensus 101 ~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~~p~----~~~l~s~s 169 (345)
T 3fm0_A 101 LEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLN--SHTQDVKHVVWHPS----QELLASAS 169 (345)
T ss_dssp ECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEEC--CCCSCEEEEEECSS----SSCEEEEE
T ss_pred ccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEec--CcCCCeEEEEECCC----CCEEEEEe
Confidence 357889999999998 25689998877 59999998776666666653 46788999999987 34699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 170 ~d~~i~ 175 (345)
T 3fm0_A 170 YDDTVK 175 (345)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999875
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.17 E-value=1.5e-05 Score=56.14 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=55.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..+|++++|+|.... ...++|+.|.+ .|.|+++... .+.+...+ +.+...+.+++|+.+ .++|++||
T Consensus 28 ~~~H~~~V~~v~~~~~~~~-~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l--~gh~~~v~~~~~~~~----~~~l~s~s 99 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKE-NSETVVTGSLDDLVKVWKWRDE-RLDLQWSL--EGHQLGVVSVDISHT----LPIAASSS 99 (321)
T ss_dssp TTSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETT-EEEEEEEE--CCCSSCEEEEEECSS----SSEEEEEE
T ss_pred cccCCCcEEEEEEecCCCC-CCCEEEEEcCCCCEEEEECCCC-Ceeeeeee--ccCCCCEEEEEECCC----CCEEEEEe
Confidence 3579999999999996543 56789999877 5999998764 22333333 468889999999976 46899999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 100 ~D~~i~ 105 (321)
T 3ow8_A 100 LDAHIR 105 (321)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 999985
No 14
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.16 E-value=3.9e-06 Score=60.53 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=59.1
Q ss_pred cccCCCCeEEEEEecCCCC---CCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKD---DQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~---~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.+.|...|.+++|+|.... .+.+++|++|.++ |.|+++...+ .++..+ .....+.+++|+.+ +..+|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--~~~~~~---~~~~~v~~v~~~p~---~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--PILAGY---PLSSPGISVQFRPS---NPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--EEEEEE---ECSSCEEEEEEETT---EEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--eeeeec---CCCCCcEEEEECCC---CCceEE
Confidence 3568999999999996542 2467999999985 9999998764 333333 24567899999976 345799
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+|+.+|.||
T Consensus 204 ~~~~d~~v~ 212 (393)
T 4gq1_A 204 VGERNGNIR 212 (393)
T ss_dssp EEETTSEEE
T ss_pred ecCCCCEEE
Confidence 999999885
No 15
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.14 E-value=2.1e-05 Score=53.88 Aligned_cols=76 Identities=7% Similarity=0.010 Sum_probs=56.1
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..++++++|+|- .+.+|+.+. +.|.||++....+...++... .+...+.+++|+.+ +..+|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~-----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~l~~~ 75 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPS-----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDN---TDLQIYVG 75 (342)
T ss_dssp CSSCCSSCEEEEEEEGG-----GTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEES---SSEEEEEE
T ss_pred cccCCCCcEEEEEEcCC-----CCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCC---CCcEEEEE
Confidence 45689999999999992 345666654 579999998875433333332 46788999999987 34279999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 76 ~~dg~i~ 82 (342)
T 1yfq_A 76 TVQGEIL 82 (342)
T ss_dssp ETTSCEE
T ss_pred cCCCeEE
Confidence 9999874
No 16
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.13 E-value=9.6e-06 Score=55.60 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=54.7
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeC-----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVG-----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl 77 (88)
+.+.|..++++++|+|.. .. ++++| .+.|.||++.... +..+..+ .+...+.+++|+.+..+ ..+
T Consensus 13 ~~~~h~~~v~~~~~~p~~----~~-l~~~~s~~~~d~~v~iw~~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~-~~~ 82 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCS----AK-FVTMGNFARGTGVIQLYEIQHGD-LKLLREI---EKAKPIKCGTFGATSLQ-QRY 82 (357)
T ss_dssp EEEECSSCEEEEEECTTS----SE-EEEEEC--CCCEEEEEEEECSSS-EEEEEEE---EESSCEEEEECTTCCTT-TCC
T ss_pred hccCCCCceEEEEEcCCC----ce-EEEecCccCCCcEEEEEeCCCCc-ccceeee---cccCcEEEEEEcCCCCC-Cce
Confidence 446699999999999943 23 44555 5689999998753 3444444 35788999999987322 355
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
|++|+.+|.|+
T Consensus 83 l~~~~~dg~i~ 93 (357)
T 3i2n_A 83 LATGDFGGNLH 93 (357)
T ss_dssp EEEEETTSCEE
T ss_pred EEEecCCCeEE
Confidence 99999999874
No 17
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2e-05 Score=54.27 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=58.3
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..+|.+++|+|. .+.+|+.+.+ .|.||++... ..+.++.+. .+...+.+++|+.+. ...+|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~--~h~~~v~~~~~~~~~--~~~~l~s~ 75 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYY-----GKRLATCSSDKTIKIFEVEGE-THKLIDTLT--GHEGPVWRVDWAHPK--FGTILASC 75 (379)
T ss_dssp CEEECCCCEEEEEECSS-----SSEEEEEETTSCEEEEEEETT-EEEEEEEEC--CCSSCEEEEEECCGG--GCSEEEEE
T ss_pred EecCCcccEEEEEEcCC-----CCEEEEEECCCcEEEEecCCC-cceeeeEec--CCCCcEEEEEeCCCC--CCCEEEEe
Confidence 45789999999999983 4578888755 6999999753 235566553 467889999999762 24679999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 76 ~~dg~v~ 82 (379)
T 3jrp_A 76 SYDGKVL 82 (379)
T ss_dssp ETTSCEE
T ss_pred ccCCEEE
Confidence 9999875
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.11 E-value=1.3e-05 Score=57.17 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=55.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|-. .+++|+++.+ .|.|++.... ++++.. .+...+++++|++. ++ .+||+||
T Consensus 265 ~~~~~~~v~~l~~sp~~----~~~lasgs~D~~i~iwd~~~~---~~~~~~---~H~~~V~~vafsP~--d~-~~l~s~s 331 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHS----SPFLASISEDCTVAVLDADFS---EVFRDL---SHRDFVTGVAWSPL--DH-SKFTTVG 331 (357)
T ss_dssp ECCCSSCEEEEEECSSS----SCCEEEEETTSCEEEECTTSC---EEEEEC---CCSSCEEEEEECSS--ST-TEEEEEE
T ss_pred EeccceeEEEEEEcCCC----CCEEEEEeCCCEEEEEECCCC---cEeEEC---CCCCCEEEEEEeCC--CC-CEEEEEc
Confidence 35688899999999843 5678988875 6999998765 556554 57788999999963 23 4699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||.||
T Consensus 332 ~Dg~v~ 337 (357)
T 4g56_B 332 WDHKVL 337 (357)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999885
No 19
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.10 E-value=8.4e-06 Score=56.96 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=53.4
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..+|.+++|+|. .+.+|+.+.+ .|.|+++...+ ...++.+. .+...+++++|+.+. ...+|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~-----g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~--gH~~~V~~v~~~~~~--~~~~l~s~ 77 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYY-----GTRLATCSSDRSVKIFDVRNGG-QILIADLR--GHEGPVWQVAWAHPM--YGNILASC 77 (316)
T ss_dssp ------CCEEEEEECGG-----GCEEEEEETTTEEEEEEEETTE-EEEEEEEE--CCSSCEEEEEECCGG--GSSCEEEE
T ss_pred ecccccCeEEEeeEcCC-----CCEEEEEeCCCeEEEEEecCCC-cEEEEEEc--CCCccEEEEEeCCCC--CCCEEEEE
Confidence 45689999999999984 4578998877 59999987642 23455554 478899999998652 13469999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.||.||
T Consensus 78 s~D~~v~ 84 (316)
T 3bg1_A 78 SYDRKVI 84 (316)
T ss_dssp ETTSCEE
T ss_pred ECCCEEE
Confidence 9999875
No 20
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.10 E-value=3.3e-05 Score=52.83 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=57.8
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..+|.+++|+|... ..+.+|+.+.+ .|.||++...+. .+.+.+. .+...+.+++|+.+ ..+|++|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~--~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~ 104 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTL--PGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQ--MHTGPVLDVCWSDD----GSKVFTA 104 (368)
T ss_dssp CSSCCSSCEEEEEECCTTS--SSEEEEEEETTSEEEEEEECTTSC-EEEEEEE--ECSSCEEEEEECTT----SSEEEEE
T ss_pred eccCCCCceEEEEEcCCCC--CceEEEEECCCCcEEEEEcCCCCc-eeEEEec--cccCCEEEEEECcC----CCEEEEE
Confidence 4578999999999999542 24678888765 699999987433 3323333 36788999999986 3569999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 105 ~~dg~v~ 111 (368)
T 3mmy_A 105 SCDKTAK 111 (368)
T ss_dssp ETTSEEE
T ss_pred cCCCcEE
Confidence 9999875
No 21
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.10 E-value=1.6e-05 Score=55.52 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=55.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--C--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--S--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
+.|..++.+++|+|.... ..+.+|+++.+ .|.|+++.... . .++++. .+..+++++|+.+ ..+||
T Consensus 209 ~~h~~~V~~v~~sp~~~~-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~----g~~la 278 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGL-PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSIT----ANILA 278 (316)
T ss_dssp BCCSSCEEEEECCCCSSC-SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTT----TCCEE
T ss_pred ccCCCceEEEEecCCCCC-CCceEEEEcCCCeEEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCC----CCEEE
Confidence 568889999999996532 35789999877 69999987621 1 234443 3678999999987 35699
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+||.+|.||
T Consensus 279 s~~~D~~v~ 287 (316)
T 3bg1_A 279 VSGGDNKVT 287 (316)
T ss_dssp EEESSSCEE
T ss_pred EEcCCCeEE
Confidence 999999885
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=98.08 E-value=2.7e-05 Score=54.50 Aligned_cols=77 Identities=6% Similarity=0.001 Sum_probs=58.3
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCc---
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG---SIKLLQCYADPDIEENFYTCAWSMDLESGR--- 75 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~--- 75 (88)
..+.|..+|++++|+| +.+|+.+.+ .|.||++.... +.+.++.+. .+...+.+++|+.+.....
T Consensus 11 ~~~~h~~~i~~~~~~~-------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp ESSCSSSCEEEEEECS-------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhhhhcCeEEEEecC-------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccc
Confidence 3467999999999987 578888876 79999998864 133455554 4678899999998722223
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
.+|++|+.+|.|+
T Consensus 82 ~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 82 CLVATTSFSGDLL 94 (397)
T ss_dssp EEEEEEETTSCEE
T ss_pred cEEEEEcCCCCEE
Confidence 6799999999874
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=98.07 E-value=3.1e-05 Score=54.68 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=56.5
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+| ..+.+|+.+.+ .|.|++.... ..+.++.+. .+...+.+++|+.+ ..+|++||
T Consensus 57 ~~~h~~~v~~~~~sp-----~g~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~--~h~~~v~~v~~sp~----~~~l~s~s 124 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSP-----CGNYLASASFDATTCIWKKNQD-DFECVTTLE--GHENEVKSVAWAPS----GNLLATCS 124 (345)
T ss_dssp CSSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECCC--EEEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred ccccCCcEEEEEECC-----CCCEEEEEECCCcEEEEEccCC-CeEEEEEcc--CCCCCceEEEEeCC----CCEEEEEE
Confidence 367899999999998 24678888876 5999998765 345555553 57888999999986 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 125 ~D~~v~ 130 (345)
T 3fm0_A 125 RDKSVW 130 (345)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999875
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.06 E-value=4e-05 Score=53.89 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|. ...||+.+.+ .|.|+++... +.+..+..+.....+.+++|+.+ ..+|++|+.
T Consensus 223 ~~h~~~v~~v~~~p~-----~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~ 290 (340)
T 1got_B 223 TGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKS----GRLLLAGYD 290 (340)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTT----SSEEEEEET
T ss_pred cCCcCCEEEEEEcCC-----CCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEECCC----CCEEEEECC
Confidence 568889999999983 4678888877 5999999876 55666655555667999999987 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 291 d~~i~ 295 (340)
T 1got_B 291 DFNCN 295 (340)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 99875
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.06 E-value=3e-05 Score=54.55 Aligned_cols=70 Identities=11% Similarity=0.252 Sum_probs=55.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|- .+.+|+.+.+ .|.|+++... +.++.+. .+...+++++|+.+ ..+|++||.
T Consensus 245 ~~h~~~v~~~~~sp~-----~~~l~s~s~D~~v~iwd~~~~---~~~~~~~--~h~~~v~~v~~s~~----g~~l~s~~~ 310 (321)
T 3ow8_A 245 SGHASWVLNVAFCPD-----DTHFVSSSSDKSVKVWDVGTR---TCVHTFF--DHQDQVWGVKYNGN----GSKIVSVGD 310 (321)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred cCCCCceEEEEECCC-----CCEEEEEeCCCcEEEEeCCCC---EEEEEEc--CCCCcEEEEEECCC----CCEEEEEeC
Confidence 468889999999983 4567887776 6999999875 6666664 47788999999976 346999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 311 d~~i~ 315 (321)
T 3ow8_A 311 DQEIH 315 (321)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 99885
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.05 E-value=2.3e-05 Score=59.58 Aligned_cols=73 Identities=21% Similarity=0.390 Sum_probs=56.2
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC-----CCCCceeEEEEeecCCCCceE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP-----DIEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~-----d~~e~~y~~aWs~d~~~~~pl 77 (88)
.+.|...+.+++|+|- .+++|+.|.+ .|.|++..... .++.+... .+...+++++|+.| ..+
T Consensus 186 l~~H~~~V~~v~fspd-----g~~las~s~D~~i~lwd~~~g~---~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~ 253 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPD-----GSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD----GTK 253 (611)
T ss_dssp ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT----SSE
T ss_pred eccccCceEEEEECCC-----CCEEEEEECCCcEEEEECCCCc---EeeeeccccccccccCCCEEEEEECCC----CCE
Confidence 3578899999999982 4689998877 59999987763 34444221 47789999999987 346
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
|++||.||.||
T Consensus 254 l~s~s~D~~v~ 264 (611)
T 1nr0_A 254 IASASADKTIK 264 (611)
T ss_dssp EEEEETTSEEE
T ss_pred EEEEeCCCeEE
Confidence 99999999885
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=98.02 E-value=2.3e-05 Score=56.81 Aligned_cols=71 Identities=11% Similarity=0.278 Sum_probs=55.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..++.+++|+|. .+++|+.|.+ .|.|+++.... .++.+. .+.+.+.+++|+.+ ..+|++||
T Consensus 104 l~gh~~~V~~~~~~p~-----~~~l~s~s~Dg~i~vwd~~~~~---~~~~l~--~h~~~V~~v~~~~~----~~~l~sgs 169 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPV-----FSVMVSASEDATIKVWDYETGD---FERTLK--GHTDSVQDISFDHS----GKLLASCS 169 (410)
T ss_dssp EECCSSCEEEEEECSS-----SSEEEEEESSSCEEEEETTTCC---CCEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred ecccCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCc---EEEEEe--ccCCcEEEEEEcCC----CCEEEEEe
Confidence 3578999999999984 3578888776 69999998763 334443 46788999999865 34799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||.||
T Consensus 170 ~D~~i~ 175 (410)
T 1vyh_C 170 ADMTIK 175 (410)
T ss_dssp TTSCCC
T ss_pred CCCeEE
Confidence 999886
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.00 E-value=4.9e-05 Score=52.12 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=55.1
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|- .+.+|+.+.+ .|.|++.... +.++.+. .+...+.+++|+.+ ..+|++|+
T Consensus 19 ~~gh~~~v~~~~~s~~-----~~~l~s~~~dg~i~iw~~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~~ 84 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPN-----GEWLASSSADKLIKIWGAYDG---KFEKTIS--GHKLGISDVAWSSD----SNLLVSAS 84 (312)
T ss_dssp ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred EcccCCcEEEEEECCC-----CCEEEEeeCCCeEEEEeCCCc---ccchhhc--cCCCceEEEEEcCC----CCEEEEEC
Confidence 3578899999999982 4578888866 6999998765 3444443 46788999999986 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 85 ~d~~i~ 90 (312)
T 4ery_A 85 DDKTLK 90 (312)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 999885
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.99 E-value=2.7e-05 Score=57.35 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=54.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+-|..+|.+++|+| +.+.+|+.+.+ .|.|++. ++ ++++.+. .+...+.+++|+.| ..+||+||.
T Consensus 13 ~GH~~~V~~~a~sp-----dg~~las~~~d~~v~iWd~--~~--~~~~~l~--gh~~~V~~l~fspd----g~~las~~~ 77 (577)
T 2ymu_A 13 EAHSSSVRGVAFSP-----DGQTIASASDDKTVKLWNR--NG--QLLQTLT--GHSSSVWGVAFSPD----GQTIASASD 77 (577)
T ss_dssp CCCSSCEEEEEECT-----TSSCEEEEETTSEEEEECT--TS--CEEEEEE--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred CCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEEC--CC--CEEEEEe--CCCCCEEEEEECCC----CCEEEEEeC
Confidence 56889999999998 34678998886 5999984 22 4566664 46788999999987 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 78 d~~i~ 82 (577)
T 2ymu_A 78 DKTVK 82 (577)
T ss_dssp TSCEE
T ss_pred CCEEE
Confidence 99875
No 30
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.99 E-value=5.5e-05 Score=53.85 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=57.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCe----eEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSI----KLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~----~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
..|..++.+++|+|+. ..++|+.+.+ .|.|+++...+.. +.++.+. .+...+.+++|+.+ +..+|+
T Consensus 78 ~~h~~~V~~~~~~p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~---~~~~l~ 148 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPT---AQNVLL 148 (402)
T ss_dssp CCCSSCEEEEEECTTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSS---BTTEEE
T ss_pred ecCCCCEEEEEeCCCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcC---CCCEEE
Confidence 5688999999999964 4678888866 6999999886321 3344443 46788999999987 345799
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+|+.+|.|+
T Consensus 149 s~~~dg~i~ 157 (402)
T 2aq5_A 149 SAGCDNVIL 157 (402)
T ss_dssp EEETTSCEE
T ss_pred EEcCCCEEE
Confidence 999999874
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.97 E-value=6.4e-05 Score=53.81 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=53.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.+..++.+++|+|- ..+++....+.|.|+++..++.+..++... ..++..+.+++|+.+ ..+|++|+.+|
T Consensus 80 ~~~~~v~~~~~s~d-----~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~-~~H~~~V~~v~~spd----g~~l~sgs~d~ 149 (344)
T 4gqb_B 80 QTEAGVADLTWVGE-----RGILVASDSGAVELWELDENETLIVSKFCK-YEHDDIVSTVSVLSS----GTQAVSGSKDI 149 (344)
T ss_dssp EESSCEEEEEEETT-----TEEEEEETTSEEEEEEECTTSSCEEEEEEE-ECCSSCEEEEEECTT----SSEEEEEETTS
T ss_pred ccCCCEEEEEEeCC-----CeEEEEECCCEEEEEeccCCCceeEeeccc-cCCCCCEEEEEECCC----CCEEEEEeCCC
Confidence 34568999999982 344444445579999998876555544332 257889999999977 34699999999
Q ss_pred EeC
Q psy8253 86 VIR 88 (88)
Q Consensus 86 ~Ir 88 (88)
.||
T Consensus 150 ~i~ 152 (344)
T 4gqb_B 150 CIK 152 (344)
T ss_dssp CEE
T ss_pred eEE
Confidence 885
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.96 E-value=7.9e-05 Score=51.56 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..+|.+++|+|- .+.+|+.+.+ .|.|++.... +.++.+. .++..+.+++|+.+ ..+|++|+
T Consensus 9 ~~~h~~~V~~~~fsp~-----~~~l~s~~~dg~v~lWd~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~s~s 74 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPT-----EPWVLTTLYSGRVELWNYETQ---VEVRSIQ--VTETPVRAGKFIAR----KNWIIVGS 74 (304)
T ss_dssp EEEECSCEEEEEECSS-----SSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEEEGG----GTEEEEEE
T ss_pred ecCCCCceEEEEECCC-----CCEEEEEcCCCcEEEEECCCC---ceeEEee--ccCCcEEEEEEeCC----CCEEEEEC
Confidence 4678899999999983 4567777655 7999999876 4555554 35677999999987 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 75 ~d~~i~ 80 (304)
T 2ynn_A 75 DDFRIR 80 (304)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 999885
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.95 E-value=6.2e-05 Score=52.82 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=54.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+| ...++|+.+.+ .|.|+++... +.++.+. .+...+++++|+.+ ..+|++||.
T Consensus 73 ~~h~~~V~~~~~~~-----~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~--~h~~~v~~v~~sp~----~~~l~s~~~ 138 (343)
T 2xzm_R 73 TGHNHFVSDLALSQ-----ENCFAISSSWDKTLRLWDLRTG---TTYKRFV--GHQSEVYSVAFSPD----NRQILSAGA 138 (343)
T ss_dssp CCCSSCEEEEEECS-----STTEEEEEETTSEEEEEETTSS---CEEEEEE--CCCSCEEEEEECSS----TTEEEEEET
T ss_pred ccCCCceEEEEECC-----CCCEEEEEcCCCcEEEEECCCC---cEEEEEc--CCCCcEEEEEECCC----CCEEEEEcC
Confidence 56888999999987 24678888866 6999999876 4455554 46788999999987 245899999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 139 d~~i~ 143 (343)
T 2xzm_R 139 EREIK 143 (343)
T ss_dssp TSCEE
T ss_pred CCEEE
Confidence 99875
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.9e-05 Score=51.24 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=55.2
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..++.+++|+|- .+.+|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ ..+|++++
T Consensus 28 l~~h~~~v~~~~~s~~-----~~~l~~~~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~~ 93 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKE-----GDLLFSCSKDSSASVWYSLNG---ERLGTLD--GHTGTIWSIDVDCF----TKYCVTGS 93 (369)
T ss_dssp EECCSSCEEEEEECTT-----SCEEEEEESSSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred EEEeeceEEEEEEcCC-----CCEEEEEeCCCEEEEEeCCCc---hhhhhhh--hcCCcEEEEEEcCC----CCEEEEEe
Confidence 3679999999999982 4567777755 6999998876 4555553 46788999999976 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 94 ~dg~i~ 99 (369)
T 3zwl_B 94 ADYSIK 99 (369)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 999874
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.93 E-value=0.00014 Score=50.77 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC----CC---------------CCceeEEE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP----DI---------------EENFYTCA 66 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~----d~---------------~e~~y~~a 66 (88)
|..++.+++|+|- .+.+|+.+.+ .|.||++... +.++.+... .+ ...+.+++
T Consensus 290 ~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~ 361 (397)
T 1sq9_A 290 HSSWVMSLSFNDS-----GETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK 361 (397)
T ss_dssp BSSCEEEEEECSS-----SSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE
T ss_pred cCCcEEEEEECCC-----CCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEE
Confidence 8889999999983 4567777755 6999999876 566666511 23 78899999
Q ss_pred EeecCC------CCceEEEEecCCcEeC
Q psy8253 67 WSMDLE------SGRPLLAVAGSRAVIR 88 (88)
Q Consensus 67 Ws~d~~------~~~plLa~aG~~G~Ir 88 (88)
|+.+.. ....+|++||.+|.|+
T Consensus 362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 362 FLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp EECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eccccccccccccccceEEEecCCCcEE
Confidence 998720 1126899999999985
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.92 E-value=9e-05 Score=51.72 Aligned_cols=71 Identities=6% Similarity=0.162 Sum_probs=56.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+| ..+.+|+++.+ .|.|+++... +.++.+. .+...+.+++|+.+ ..+|++|+
T Consensus 61 ~~~h~~~v~~~~~s~-----dg~~l~s~s~D~~v~~wd~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~s 126 (319)
T 3frx_A 61 FKGHSHIVQDCTLTA-----DGAYALSASWDKTLRLWDVATG---ETYQRFV--GHKSDVMSVDIDKK----ASMIISGS 126 (319)
T ss_dssp EECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEECTT----SCEEEEEE
T ss_pred EeCCcccEEEEEECC-----CCCEEEEEeCCCEEEEEECCCC---CeeEEEc--cCCCcEEEEEEcCC----CCEEEEEe
Confidence 357889999999987 35678888876 6999999876 5666664 46788999999876 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 127 ~D~~i~ 132 (319)
T 3frx_A 127 RDKTIK 132 (319)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999875
No 37
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.92 E-value=0.00013 Score=49.88 Aligned_cols=72 Identities=8% Similarity=0.180 Sum_probs=54.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..++.+++|+| ..+.+|+++.+ .|.|+++... ++++.. .+...+.+++|...+ ...+|++|+
T Consensus 82 ~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~---~~~~~~---~~~~~v~~~~~~~~~--~~~~l~~~~ 148 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSD-----DGSKVFTASCDKTAKMWDLSSN---QAIQIA---QHDAPVKTIHWIKAP--NYSCVMTGS 148 (368)
T ss_dssp EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEE---ECSSCEEEEEEEECS--SCEEEEEEE
T ss_pred eccccCCEEEEEECc-----CCCEEEEEcCCCcEEEEEcCCC---Cceeec---cccCceEEEEEEeCC--CCCEEEEcc
Confidence 356889999999998 34567777765 6999999876 444444 367889999996542 246799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 149 ~dg~i~ 154 (368)
T 3mmy_A 149 WDKTLK 154 (368)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 999875
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.91 E-value=8.4e-05 Score=51.24 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=56.6
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
++.-|..++.+++|+|- .+.+|+.+ .+.|.||+.... ..+.++.+. .+...+.+++|+.+ ..+|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~-----~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~--~h~~~v~~~~~~~~----~~~l~~~ 70 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-----RTQIAICPNNHEVHIYEKSGN-KWVQVHELK--EHNGQVTGVDWAPD----SNRIVTC 70 (372)
T ss_dssp EEESCSSCCCEEEECTT-----SSEEEEECSSSEEEEEEEETT-EEEEEEEEE--CCSSCEEEEEEETT----TTEEEEE
T ss_pred eecccCCCeEEEEECCC-----CCEEEEEeCCCEEEEEeCCCC-cEEeeeeec--CCCCcccEEEEeCC----CCEEEEE
Confidence 45568899999999983 45788875 457999998775 234666665 46788999999976 3569999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
+.+|.|+
T Consensus 71 ~~dg~i~ 77 (372)
T 1k8k_C 71 GTDRNAY 77 (372)
T ss_dssp ETTSCEE
T ss_pred cCCCeEE
Confidence 9999874
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.91 E-value=0.0001 Score=51.98 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..++.+++|+|- .+.+|+.+.+ .|.||++.....+ +.+. .+...+.+++|+.+ ..+|++|+
T Consensus 135 ~~~h~~~v~~~~~~~~-----~~~l~s~s~d~~i~iwd~~~~~~~---~~~~--~h~~~v~~~~~~~~----~~~l~s~~ 200 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPS-----GEALISSSQDMQLKIWSVKDGSNP---RTLI--GHRATVTDIAIIDR----GRNVLSAS 200 (420)
T ss_dssp TTSSSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTCCCC---EEEE--CCSSCEEEEEEETT----TTEEEEEE
T ss_pred cccccCccEEEEECCC-----CCEEEEEeCCCeEEEEeCCCCcCc---eEEc--CCCCcEEEEEEcCC----CCEEEEEc
Confidence 3578999999999982 4578888776 6999999876443 3333 46788999999976 34689999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 201 ~d~~v~ 206 (420)
T 3vl1_A 201 LDGTIR 206 (420)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999874
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.91 E-value=6.6e-05 Score=52.41 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=58.1
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.+.|..++.+++|+|- ..+++|+.|.+ .|.++++..+.. -..++.+. .+...+.+|+|+.+ ..+|++
T Consensus 13 l~gH~~~V~~l~~~~~----~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----g~~l~s 82 (319)
T 3frx_A 13 LEGHNGWVTSLATSAG----QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTAD----GAYALS 82 (319)
T ss_dssp ECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTT----SSEEEE
T ss_pred EccccceEEEEEccCC----CccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCC----CCEEEE
Confidence 3689999999999873 35789999887 599999875432 13455554 47889999999977 356999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
||.||.||
T Consensus 83 ~s~D~~v~ 90 (319)
T 3frx_A 83 ASWDKTLR 90 (319)
T ss_dssp EETTSEEE
T ss_pred EeCCCEEE
Confidence 99999986
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.90 E-value=0.00014 Score=51.01 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=58.8
Q ss_pred cccCCCCeEEEEEecCCCC-CCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253 4 KEDHGQPLFGAQFNHLLKD-DQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~-~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl 77 (88)
.+.|..+|++++|.+.... ...+++|+.|.+ .|.|+++..... -..++.+ ..+...+.+++|+.+ ..+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~----~~~ 90 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL--TGHNHFVSDLALSQE----NCF 90 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE--CCCSSCEEEEEECSS----TTE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh--ccCCCceEEEEECCC----CCE
Confidence 4679999999999664432 257899999987 599999976432 1233333 257888999999976 457
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
|++|+.||.||
T Consensus 91 l~s~s~D~~v~ 101 (343)
T 2xzm_R 91 AISSSWDKTLR 101 (343)
T ss_dssp EEEEETTSEEE
T ss_pred EEEEcCCCcEE
Confidence 99999999885
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.90 E-value=3.1e-05 Score=55.35 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=56.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCC---CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPD---GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~---~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.+.|..+|.+++|+|.. .+.+|+.|.+ .|.|+++.. ....+....+ .+...+.+++|+.+ ..+|+
T Consensus 59 ~~~h~~~V~~~~~s~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~----~~~l~ 127 (437)
T 3gre_A 59 MENEPNSITSSAVSPGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMIPN----FDAFA 127 (437)
T ss_dssp CTTTTSCEEEEEEECSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEECTT----SSEEE
T ss_pred ccCCCCceEEEEECCCC----CCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEeCC----CCEEE
Confidence 46788999999999842 4678998876 599999876 3323334455 36788999999965 35699
Q ss_pred EecCCcEeC
Q psy8253 80 VAGSRAVIR 88 (88)
Q Consensus 80 ~aG~~G~Ir 88 (88)
+|+.+|.|+
T Consensus 128 s~s~dg~i~ 136 (437)
T 3gre_A 128 VSSKDGQII 136 (437)
T ss_dssp EEETTSEEE
T ss_pred EEeCCCEEE
Confidence 999999885
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.5e-05 Score=52.06 Aligned_cols=78 Identities=13% Similarity=0.234 Sum_probs=58.6
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|... ...++|+++.+ .|.||++...........+........+.+++|+.+ ..+|++++.
T Consensus 203 ~~h~~~v~~~~~sp~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~ 276 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVL--LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG 276 (379)
T ss_dssp CCCSSCEEEEEECCCCS--SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEES
T ss_pred ecccCcEeEEEECCCCC--CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC----CCEEEEecC
Confidence 45888999999998531 25678888866 699999988654334444544457888999999987 346999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 277 dg~i~ 281 (379)
T 3jrp_A 277 DNKVT 281 (379)
T ss_dssp SSSEE
T ss_pred CCcEE
Confidence 99874
No 44
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.89 E-value=0.00019 Score=48.19 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=61.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.|...+++++|+|-.. ....+|+.+.+...++.....+.+..+..+. .+...+.+++|+.+......+|++|+.+|
T Consensus 165 ~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 5778999999999632 4678999999988888888877666666653 47888999999988322237899999999
Q ss_pred EeC
Q psy8253 86 VIR 88 (88)
Q Consensus 86 ~Ir 88 (88)
.||
T Consensus 241 ~i~ 243 (351)
T 3f3f_A 241 RIR 243 (351)
T ss_dssp CEE
T ss_pred eEE
Confidence 885
No 45
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.89 E-value=0.00012 Score=51.36 Aligned_cols=71 Identities=11% Similarity=0.262 Sum_probs=54.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..+|++++|+| ..+.+|+.|.+ .|.|++.... +.++.+. .+...+++|+|+.+ ..+|++||
T Consensus 51 l~gH~~~v~~~~~s~-----d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~s~~ 116 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-----DSRLLLSASQDGKLIIWDSYTT---NKVHAIP--LRSSWVMTCAYAPS----GNYVACGG 116 (340)
T ss_dssp ECCCSSCEEEEEECT-----TSSEEEEEETTTEEEEEETTTC---CEEEEEE--CSSSCEEEEEECTT----SSEEEEEE
T ss_pred ecCCCCceEEEEECC-----CCCEEEEEeCCCcEEEEECCCC---CcceEee--cCCccEEEEEECCC----CCEEEEEe
Confidence 356899999999987 35678888877 6999998876 3344443 35677999999986 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 117 ~d~~v~ 122 (340)
T 1got_B 117 LDNICS 122 (340)
T ss_dssp TTCEEE
T ss_pred CCCeEE
Confidence 999874
No 46
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.89 E-value=8.9e-05 Score=53.76 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=57.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|.. ..+||+++.+ .|.||++......+.+..+. .+...+.+++|+.+ +..+|++|+.
T Consensus 228 ~~h~~~v~~v~~~p~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~---~~~~l~tg~~ 298 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPY---SEFILATGSA 298 (430)
T ss_dssp CCCSSCEEEEEECSSC----TTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSS---CTTEEEEEET
T ss_pred cCCCCCEeeeEEeCCC----CCEEEEEeCCCeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCC---CCCEEEEEeC
Confidence 4688899999999843 5789888755 79999998764334444443 36778999999976 4568999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 299 dg~v~ 303 (430)
T 2xyi_A 299 DKTVA 303 (430)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 99885
No 47
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.86 E-value=0.00011 Score=52.30 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=57.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|.. ..++|+.+.+ .|.|+++... +.++.+....+...+.+++|+.+ ..+|++|+.
T Consensus 128 ~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~ 196 (402)
T 2aq5_A 128 EGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRD----GALICTSCR 196 (402)
T ss_dssp ECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECTT----SSCEEEEET
T ss_pred cCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECCC----CCEEEEEec
Confidence 4688999999999843 4578888766 6999999876 56666642357889999999976 346999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 197 d~~i~ 201 (402)
T 2aq5_A 197 DKRVR 201 (402)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 99885
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.85 E-value=7.9e-05 Score=53.42 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=51.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcC----------------CCCCceeEEEEee
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADP----------------DIEENFYTCAWSM 69 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~----------------d~~e~~y~~aWs~ 69 (88)
+|..++.+++|+| +.+.+|+.+.+.+.||+..... .+..+.+. ..+..+.+++|+.
T Consensus 62 ~h~~~V~~v~fsp-----dg~~la~g~~~~v~i~~~~~g~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSN-----DGEYLATGCNKTTQVYRVSDGS---LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEECT-----TSSEEEEECBSCEEEEETTTCC---EEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEECC-----CCCEEEEEcCCcEEEEEecCCC---EEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 5889999999998 2467888777889999998763 33333221 1122478999997
Q ss_pred cCCCCceEEEEecCCcEeC
Q psy8253 70 DLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 70 d~~~~~plLa~aG~~G~Ir 88 (88)
| ..+||+|+.+|.||
T Consensus 134 d----g~~l~s~~~d~~i~ 148 (393)
T 1erj_A 134 D----GKFLATGAEDRLIR 148 (393)
T ss_dssp T----SSEEEEEETTSCEE
T ss_pred C----CCEEEEEcCCCeEE
Confidence 6 34699999999885
No 49
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.85 E-value=0.00014 Score=50.30 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|.. ..+||+.+.+ .|.|+++....+...+. ...+..+..++|+..+ ..++|++|+
T Consensus 136 ~~~h~~~v~~v~~~p~~----~~~l~sgs~D~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~--~~~~l~s~s 205 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKD----PSTFASGCLDRTVKVWSLGQSTPNFTLT----TGQERGVNYVDYYPLP--DKPYMITAS 205 (304)
T ss_dssp ECCCCSCEEEEEECTTC----TTEEEEEETTSEEEEEETTCSSCSEEEE----CCCTTCEEEEEECCST--TCCEEEEEE
T ss_pred hcccCCcEEEEEECCCC----CCEEEEEeCCCeEEEEECCCCCccceec----cCCcCcEEEEEEEEcC--CCCEEEEEc
Confidence 46788999999999853 5678888876 59999997754433222 1355678889998763 357899999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 206 ~D~~i~ 211 (304)
T 2ynn_A 206 DDLTIK 211 (304)
T ss_dssp TTSEEE
T ss_pred CCCeEE
Confidence 999985
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.85 E-value=6.2e-05 Score=51.51 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=57.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|... ....+++.+ .+.|.||++.....+..+.......+...+++++|+.+ +..+|++|+.
T Consensus 206 ~~~~~~v~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~ 280 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDI--SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ---NRELFLTAGG 280 (357)
T ss_dssp EECSSCEEEEEESCSSS--SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT---EEEEEEEEET
T ss_pred cCCCCceEEEEcCCCCC--CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC---CCcEEEEEeC
Confidence 46788999999999642 244566665 45799999987655444443333457889999999976 3448999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 281 dg~i~ 285 (357)
T 3i2n_A 281 AGGLH 285 (357)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 99885
No 51
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.84 E-value=4.9e-05 Score=54.29 Aligned_cols=71 Identities=8% Similarity=0.169 Sum_probs=54.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..+|++++|+|- .+.+|+.+.+ .|.|++.... +.++.+. .+...+.+|+|+.+ ..+||+||
T Consensus 62 l~gH~~~V~~~~~sp~-----~~~l~s~s~D~~v~iWd~~~~---~~~~~~~--~h~~~v~~~~~s~~----g~~las~~ 127 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPE-----KNWIVSASQDGRLIVWNALTS---QKTHAIK--LHCPWVMECAFAPN----GQSVACGG 127 (380)
T ss_dssp ECCCSSCEEEEEECTT-----SSCEEEEETTSEEEEEETTTT---EEEEEEE--CCCTTCCCCEECTT----SSEEEECC
T ss_pred ccccccEEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC---ccceEEe--cCCCCEEEEEECCC----CCEEEEee
Confidence 4679999999999983 4568888877 6999998876 4444443 35677999999976 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 128 ~d~~v~ 133 (380)
T 3iz6_a 128 LDSACS 133 (380)
T ss_dssp SSSCCE
T ss_pred CCCcEE
Confidence 998764
No 52
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.84 E-value=0.00012 Score=51.90 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--------CeeEEEEEEcCCCC------------CceeEE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--------SIKLLQCYADPDIE------------ENFYTC 65 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--------~~~~l~~~~d~d~~------------e~~y~~ 65 (88)
+..+|.+++|+| ..+.+|+.+.+ .|.||++.... ..++++.+.. +. +.+.++
T Consensus 27 ~~~~V~~v~~s~-----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH-----SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS--HEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS-----SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC--CCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC-----CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc--ccccccccccccccCceEEE
Confidence 457999999998 35678888765 69999998643 2446666653 33 789999
Q ss_pred EEeecCCCCceEEEEecCCcEeC
Q psy8253 66 AWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 66 aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+|+.+ ....+|++|+.+|.||
T Consensus 100 ~~~~~--~~~~~l~s~s~d~~i~ 120 (447)
T 3dw8_B 100 RWLPQ--KNAAQFLLSTNDKTIK 120 (447)
T ss_dssp EECCC--CSSSEEEEEECSSCEE
T ss_pred EEcCC--CCcceEEEeCCCCeEE
Confidence 99987 3336799999999885
No 53
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.83 E-value=9.4e-05 Score=51.79 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=52.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..++.+++|+|.. ..+.||+++.+ .|.||++.... .++.+.. .....+.+++|+.+ ..+||+|+.+
T Consensus 123 ~~~~~v~~~~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~-~~~~~i~~~~~~pd----g~~lasg~~d 191 (343)
T 3lrv_A 123 DSANEIIYMYGHNEV---NTEYFIWADNRGTIGFQSYEDDS---QYIVHSA-KSDVEYSSGVLHKD----SLLLALYSPD 191 (343)
T ss_dssp CCSSCEEEEECCC------CCEEEEEETTCCEEEEESSSSC---EEEEECC-CSSCCCCEEEECTT----SCEEEEECTT
T ss_pred CCCCCEEEEEcCCCC---CCCEEEEEeCCCcEEEEECCCCc---EEEEEec-CCCCceEEEEECCC----CCEEEEEcCC
Confidence 455789999999954 35678888866 69999998763 3443322 34556999999986 4679999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.||
T Consensus 192 g~i~ 195 (343)
T 3lrv_A 192 GILD 195 (343)
T ss_dssp SCEE
T ss_pred CEEE
Confidence 9885
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.83 E-value=0.00016 Score=49.51 Aligned_cols=71 Identities=11% Similarity=0.296 Sum_probs=54.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|- .+.+|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ ..+|++|+
T Consensus 61 ~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~s~~ 126 (312)
T 4ery_A 61 ISGHKLGISDVAWSSD-----SNLLVSASDDKTLKIWDVSSG---KCLKTLK--GHSNYVFCCNFNPQ----SNLIVSGS 126 (312)
T ss_dssp ECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS----SSEEEEEE
T ss_pred hccCCCceEEEEEcCC-----CCEEEEECCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC----CCEEEEEe
Confidence 3568889999999982 4678888776 6999999876 4444443 36778999999976 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 127 ~d~~i~ 132 (312)
T 4ery_A 127 FDESVR 132 (312)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999875
No 55
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=97.82 E-value=6.3e-05 Score=55.73 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=54.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|+.++.+++|+|.. ..+||+++.+ .|.|+++... ..+.... .+...+++++|+.+ |+ +|++|+.
T Consensus 146 ~~h~~~V~~v~~~p~~----~~~las~s~Dg~v~iwD~~~~---~~~~~~~--~~~~~v~~v~wspd---g~-~lasgs~ 212 (434)
T 2oit_A 146 KDAGGMVIDMKWNPTV----PSMVAVCLADGSIAVLQVTET---VKVCATL--PSTVAVTSVCWSPK---GK-QLAVGKQ 212 (434)
T ss_dssp CSGGGSEEEEEECSSC----TTEEEEEETTSCEEEEEESSS---EEEEEEE--CGGGCEEEEEECTT---SS-CEEEEET
T ss_pred CCCCCceEEEEECCCC----CCEEEEEECCCeEEEEEcCCC---cceeecc--CCCCceeEEEEcCC---CC-EEEEEcC
Confidence 3478899999999953 5789988877 5999999875 2333332 35778999999987 34 4999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 213 dg~v~ 217 (434)
T 2oit_A 213 NGTVV 217 (434)
T ss_dssp TSCEE
T ss_pred CCcEE
Confidence 99874
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.82 E-value=5.4e-05 Score=54.90 Aligned_cols=73 Identities=4% Similarity=-0.001 Sum_probs=54.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|...|.+++|+|.. +.++|+-+.+ .|.|+++.......+++. ..+...+.+++|+.. ++ .+|++||.|
T Consensus 117 ~~~~~V~~l~~~P~~----~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~p~--~~-~~l~s~s~D 186 (435)
T 4e54_B 117 PFDRRATSLAWHPTH----PSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFNPL--NT-NQFYASSME 186 (435)
T ss_dssp ECSSCEEEEEECSSC----TTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEECSS--CT-TEEEEECSS
T ss_pred CCCCCEEEEEEeCCC----CCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEeCC--CC-CEEEEEeCC
Confidence 466779999999854 4578887765 699999887644333332 257889999999964 33 359999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.||
T Consensus 187 ~~v~ 190 (435)
T 4e54_B 187 GTTR 190 (435)
T ss_dssp SCEE
T ss_pred CEEE
Confidence 9885
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.81 E-value=0.00017 Score=49.69 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=54.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+| ..+.+|+.+.+ .|.||++... +..+.+.-..+...+.+++|+.+ ..+|++|+.
T Consensus 49 ~~h~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~ 116 (372)
T 1k8k_C 49 KEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPN----EKKFAVGSG 116 (372)
T ss_dssp ECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEEEETT---EEEEEEECCCCSSCEEEEEECTT----SSEEEEEET
T ss_pred cCCCCcccEEEEeC-----CCCEEEEEcCCCeEEEEECCCC---eeeeeEEeecCCCceeEEEECCC----CCEEEEEeC
Confidence 46888999999998 24567777765 6999999765 44444444467888999999976 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 117 d~~v~ 121 (372)
T 1k8k_C 117 SRVIS 121 (372)
T ss_dssp TSSEE
T ss_pred CCEEE
Confidence 98774
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.81 E-value=8.4e-05 Score=52.74 Aligned_cols=75 Identities=9% Similarity=0.164 Sum_probs=55.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEE-----EcCCCCCceeEEEEeecCCCCceEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCY-----ADPDIEENFYTCAWSMDLESGRPLL 78 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~-----~d~d~~e~~y~~aWs~d~~~~~plL 78 (88)
...|..++.+++|+| ..+.+|+...+.|.|+++...+ +.++.+ ....+...+.+++|+.+ +..+|
T Consensus 173 ~~~h~~~v~~~~~~~-----~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l 242 (447)
T 3dw8_B 173 ANAHTYHINSISINS-----DYETYLSADDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPN---SCNTF 242 (447)
T ss_dssp CSCCSSCCCEEEECT-----TSSEEEEECSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSS---CTTEE
T ss_pred ccCCCcceEEEEEcC-----CCCEEEEeCCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCC---CCcEE
Confidence 367999999999998 2567888777789999998532 333322 12356788999999977 33579
Q ss_pred EEecCCcEeC
Q psy8253 79 AVAGSRAVIR 88 (88)
Q Consensus 79 a~aG~~G~Ir 88 (88)
++|+.+|.||
T Consensus 243 ~s~~~dg~i~ 252 (447)
T 3dw8_B 243 VYSSSKGTIR 252 (447)
T ss_dssp EEEETTSCEE
T ss_pred EEEeCCCeEE
Confidence 9999999875
No 59
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.80 E-value=0.00018 Score=48.55 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..+..++..+.|.|.. ..++++.| .+.|.|+++... +.++.+. .+...+.+++|+.| ..+||+||
T Consensus 237 ~~~~~~v~~~~~~~~~----~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~--gH~~~V~~l~~spd----g~~l~S~s 303 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPTM---AKVAELK--GHTSRVLSLTMSPD----GATVASAA 303 (318)
T ss_dssp EECSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSCEEEEE
T ss_pred ccceeeeeeeeecccc----cceEEEEEcCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC----CCEEEEEe
Confidence 3456677888888744 33444443 357999999876 5556553 47888999999987 34699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.||.||
T Consensus 304 ~D~~v~ 309 (318)
T 4ggc_A 304 ADETLR 309 (318)
T ss_dssp TTTEEE
T ss_pred cCCeEE
Confidence 999986
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00011 Score=51.45 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=55.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..++.+++|+|. ..+++|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ +..+|++++.+
T Consensus 260 ~~~~~v~~~~~s~~----~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~--~~~~~v~~~~~s~~---~~~~l~s~~~d 327 (416)
T 2pm9_A 260 GHQKGILSLDWCHQ----DEHLLLSSGRDNTVLLWNPESA---EQLSQFP--ARGNWCFKTKFAPE---APDLFACASFD 327 (416)
T ss_dssp CCSSCEEEEEECSS----CSSCEEEEESSSEEEEECSSSC---CEEEEEE--CSSSCCCCEEECTT---CTTEEEECCSS
T ss_pred CccCceeEEEeCCC----CCCeEEEEeCCCCEEEeeCCCC---ccceeec--CCCCceEEEEECCC---CCCEEEEEecC
Confidence 68889999999984 34667887765 7999998876 4555554 35678999999987 33579999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 328 ~~i~ 331 (416)
T 2pm9_A 328 NKIE 331 (416)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 9885
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.78 E-value=0.00021 Score=48.85 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=56.5
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|...+++++|+|-... ..+++|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ + ..+|++|+.+
T Consensus 67 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~--~~~~~i~~~~~~~~--~-~~~l~s~~~d 137 (366)
T 3k26_A 67 DADENFYTCAWTYDSNT-SHPLLAVAGSRGIIRIINPITM---QCIKHYV--GHGNAINELKFHPR--D-PNLLLSVSKD 137 (366)
T ss_dssp CTTCCEEEEEEEECTTT-CCEEEEEEETTCEEEEECTTTC---CEEEEEE--SCCSCEEEEEECSS--C-TTEEEEEETT
T ss_pred CCCCcEEEEEeccCCCC-CCCEEEEecCCCEEEEEEchhc---eEeeeec--CCCCcEEEEEECCC--C-CCEEEEEeCC
Confidence 36788999999997643 35678887776 6999998875 4555554 46788999999973 2 3469999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 138 g~i~ 141 (366)
T 3k26_A 138 HALR 141 (366)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 9875
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.78 E-value=0.00015 Score=50.58 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=53.9
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--------------C-eeEEEEEEcCCCCCceeEEEEeec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--------------S-IKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--------------~-~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
|..++.+++|+|- .+.+|+.+.+ .|.||++...+ + -++++.+ .+...+.+++|+.+
T Consensus 145 h~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 145 LRSTILSLDWHPN-----NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS 216 (377)
T ss_dssp CCSCEEEEEECTT-----SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT
T ss_pred cCCCeEEEEEcCC-----CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC
Confidence 8899999999982 4678888776 59999985321 1 2445555 57888999999987
Q ss_pred CCCCceEEEEecCCcEeC
Q psy8253 71 LESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 71 ~~~~~plLa~aG~~G~Ir 88 (88)
..+|++|+.+|.|+
T Consensus 217 ----~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 217 ----GNALAYAGHDSSVT 230 (377)
T ss_dssp ----SSCEEEEETTTEEC
T ss_pred ----CCEEEEEeCCCcEE
Confidence 34699999999986
No 63
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.78 E-value=0.0002 Score=50.77 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=55.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+|- .+.||+++.+ .|.||++..+ +.+..+..........+++|+.+ ..+|++|+
T Consensus 236 ~~~h~~~v~~v~~~p~-----~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~----g~~l~~g~ 303 (354)
T 2pbi_B 236 FETHESDVNSVRYYPS-----GDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLS----GRLLFAGY 303 (354)
T ss_dssp ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTT----SSEEEEEE
T ss_pred ecCCCCCeEEEEEeCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCC----CCEEEEEE
Confidence 3568889999999983 4679998877 5999999876 44555544444557889999976 35799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 304 ~d~~i~ 309 (354)
T 2pbi_B 304 NDYTIN 309 (354)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999875
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.76 E-value=0.00018 Score=51.35 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=54.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCC-----CCCceeEEEEeecCCCCceE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPD-----IEENFYTCAWSMDLESGRPL 77 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d-----~~e~~y~~aWs~d~~~~~pl 77 (88)
.+.|..++.+++|+| ..+.||+.+.+ .|.|+++... +.++.+.... ....+.+++|+.+ ..+
T Consensus 245 ~~~h~~~v~~v~~~p-----~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~ 312 (380)
T 3iz6_a 245 YHGHEGDINSVKFFP-----DGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDRNDNELPIVTSVAFSIS----GRL 312 (380)
T ss_dssp ECCCSSCCCEEEECT-----TSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSSSCCSSCSCSEEEECSS----SSE
T ss_pred ECCcCCCeEEEEEec-----CCCeEEEEcCCCeEEEEECCCC---cEEEEecccccccccccCceEEEEECCC----CCE
Confidence 356888999999998 35679999887 5999999886 5555554321 1234789999987 356
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
|++|+.+|.|+
T Consensus 313 l~~g~~dg~i~ 323 (380)
T 3iz6_a 313 LFAGYSNGDCY 323 (380)
T ss_dssp EEEECTTSCEE
T ss_pred EEEEECCCCEE
Confidence 99999999874
No 65
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.75 E-value=0.00024 Score=50.43 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=54.5
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..+|++++|+| +.+.+|+.|.+ .|.|++..+. +.++.+. .+...+.+|+|+.+ ..+||+||
T Consensus 60 l~gH~~~V~~~~~s~-----d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~--~~~~~v~~~~~sp~----g~~lasg~ 125 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-----DKRRIVSSSQDGKVIVWDSFTT---NKEHAVT--MPCTWVMACAYAPS----GCAIACGG 125 (354)
T ss_dssp EECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTC---CEEEEEE--CSSSCCCEEEECTT----SSEEEEES
T ss_pred ecCCCCeEEEEEECC-----CCCEEEEEeCCCeEEEEECCCC---CcceEEe--cCCCCEEEEEECCC----CCEEEEee
Confidence 357999999999998 24678998887 5999998776 3334443 25667999999987 34699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 126 ~d~~i~ 131 (354)
T 2pbi_B 126 LDNKCS 131 (354)
T ss_dssp TTSEEE
T ss_pred CCCCEE
Confidence 999874
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.74 E-value=0.00022 Score=54.54 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++|+| +.+.+|+.+.+ .|.||+.... +.++.+. .++..+.+++|+.+ ..+||+||
T Consensus 9 ~~~h~~~v~~i~~sp-----~~~~la~~~~~g~v~iwd~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~~~~ 74 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVEIWNYETQ---VEVRSIQ--VTETPVRAGKFIAR----KNWIIVGS 74 (814)
T ss_dssp EEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEEEGG----GTEEEEEE
T ss_pred eecCCCceEEEEECC-----CCCEEEEEeCCCEEEEEECCCC---ceEEEEe--cCCCcEEEEEEeCC----CCEEEEEe
Confidence 467899999999999 24567777755 7999998875 5666664 36778999999987 45799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 75 ~dg~i~ 80 (814)
T 3mkq_A 75 DDFRIR 80 (814)
T ss_dssp TTSEEE
T ss_pred CCCeEE
Confidence 999874
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.74 E-value=0.0002 Score=50.24 Aligned_cols=74 Identities=7% Similarity=0.066 Sum_probs=56.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++++++|+|.. ++++|+.+.+ .|.||++........ +....+...+.+++|+.+ +..+|++|+.
T Consensus 70 ~~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~~~~~~~---~~~~l~s~~~ 139 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTH----PTTVAVGSKGGDIILWDYDVQNKTSF---IQGMGPGDAITGMKFNQF---NTNQLFVSSI 139 (383)
T ss_dssp CCCSSCEEEEEECSSC----TTEEEEEEBTSCEEEEETTSTTCEEE---ECCCSTTCBEEEEEEETT---EEEEEEEEET
T ss_pred cCCCCCEEEEEECCCC----CCEEEEEcCCCeEEEEeCCCccccee---eecCCcCCceeEEEeCCC---CCCEEEEEeC
Confidence 5688999999999843 3678888775 699999987643333 332357889999999984 2467999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 140 d~~i~ 144 (383)
T 3ei3_B 140 RGATT 144 (383)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 99875
No 68
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.73 E-value=0.00016 Score=48.80 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=46.1
Q ss_pred CCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 25 PRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 25 ~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
+.++|+..++.|.|++.... ++++.+.-..+...+.+++|+.+ ..+||+||.+|.|+
T Consensus 36 ~~~lAvg~D~tV~iWd~~tg---~~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASSG---DILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQ 92 (318)
T ss_dssp TSEEEEEETTEEEEEETTTC---CEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSEEE
T ss_pred CCEEEEEeCCEEEEEECCCC---CEEEEEEecCCCCeEEEEEECCC----CCEEEEEECCCcEE
Confidence 45888887889999998876 55666655578888999999987 35699999999885
No 69
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.73 E-value=0.00018 Score=54.70 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=56.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|.. ...+|+.|.+ .|.+++..+. +.++.+. .+...+++++|+.| ..+||+||.
T Consensus 144 ~gh~~~v~~v~f~p~~----~~~l~s~s~D~~v~lwd~~~~---~~~~~l~--~H~~~V~~v~fspd----g~~las~s~ 210 (611)
T 1nr0_A 144 TGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPF---KFKSTFG--EHTKFVHSVRYNPD----GSLFASTGG 210 (611)
T ss_dssp CCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTB---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred cCCCCCceEEEECCCC----CeEEEEEeCCCeEEEEECCCC---eEeeeec--cccCceEEEEECCC----CCEEEEEEC
Confidence 5788999999999843 3468888877 5999997653 5666653 57889999999987 347999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 211 D~~i~ 215 (611)
T 1nr0_A 211 DGTIV 215 (611)
T ss_dssp TSCEE
T ss_pred CCcEE
Confidence 99885
No 70
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.72 E-value=7.4e-05 Score=53.25 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=48.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
..|...+.+++|+|- ..+++..+.+.|.|+++.....+.+ ..+....++..+.+++|+.+ ..+|++|+.+
T Consensus 91 ~~~~~~V~~~~~s~d-----~~~l~~s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~V~~v~~spd----g~~l~sgs~d 160 (357)
T 4g56_B 91 VQTEAGVTDVAWVSE-----KGILVASDSGAVELWEILEKESLLV-NKFAKYEHDDIVKTLSVFSD----GTQAVSGGKD 160 (357)
T ss_dssp EECSSCEEEEEEETT-----TEEEEEETTSCEEEC--------CC-CCEEECCCSSCEEEEEECSS----SSEEEEEETT
T ss_pred CCCCCCEEEEEEcCC-----CCEEEEECCCEEEEeeccccceeEE-EeeccCCCCCCEEEEEECCC----CCEEEEEeCC
Confidence 357778999999982 4566666667899999887643222 22222357888999999977 3469999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.||
T Consensus 161 g~v~ 164 (357)
T 4g56_B 161 FSVK 164 (357)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 9875
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.71 E-value=0.0002 Score=51.83 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=52.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
..|..+|.+++|+|.. ...|+++|.+ .|.|+++... .++.+.. ......+.+++|+.+ ..+|++|+
T Consensus 161 ~gH~~~V~~l~f~p~~----~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~g~ 228 (435)
T 4e54_B 161 IGAGGSITGLKFNPLN----TNQFYASSMEGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSAS----SRMVVTGD 228 (435)
T ss_dssp CSSSCCCCEEEECSSC----TTEEEEECSSSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEETT----TTEEEEEC
T ss_pred cCCCCCEEEEEEeCCC----CCEEEEEeCCCEEEEeeccCC----ceeEEeccCCCCccEEEEEECCC----CCEEEEEe
Confidence 4688999999999854 4678888876 5999998653 2333322 234556788888876 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 229 ~dg~i~ 234 (435)
T 4e54_B 229 NVGNVI 234 (435)
T ss_dssp SSSBEE
T ss_pred CCCcEe
Confidence 999874
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.71 E-value=0.00016 Score=55.45 Aligned_cols=75 Identities=7% Similarity=0.018 Sum_probs=57.6
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-e-eEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-I-KLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~-~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.+.|...|.+++|+|. ...++|++|.+ .|.|+++..+.. . ...+.+. .+...+.+++|+.+ ..+|++
T Consensus 378 l~~H~~~V~~v~~~~~----~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~----g~~l~s 447 (694)
T 3dm0_A 378 MRAHTDMVTAIATPID----NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSD----GQFALS 447 (694)
T ss_dssp EECCSSCEEEEECCTT----CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTT----SSEEEE
T ss_pred cccCCceeEEEEecCC----CCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCC----CCEEEE
Confidence 3579999999999873 35789999987 699999987543 2 2233332 57888999999976 356999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
||.+|.||
T Consensus 448 gs~Dg~v~ 455 (694)
T 3dm0_A 448 GSWDGELR 455 (694)
T ss_dssp EETTSEEE
T ss_pred EeCCCcEE
Confidence 99999986
No 73
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.70 E-value=0.00028 Score=47.67 Aligned_cols=69 Identities=13% Similarity=0.248 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|- .+.+++.+.+ .|.||++.... .+... .+...+.+++|+.+ ..+|++|+.
T Consensus 262 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~~~~~~~---~~~~~---~~~~~v~~~~~s~~----~~~l~~~~~ 326 (337)
T 1gxr_A 262 HLHESCVLSLKFAYC-----GKWFVSTGKDNLLNAWRTPYGA---SIFQS---KESSSVLSCDISVD----DKYIVTGSG 326 (337)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTCC---EEEEE---ECSSCEEEEEECTT----SCEEEEEET
T ss_pred cCCccceeEEEECCC-----CCEEEEecCCCcEEEEECCCCe---EEEEe---cCCCcEEEEEECCC----CCEEEEecC
Confidence 567889999999882 4467777655 69999998763 33333 35778999999987 356999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 327 dg~i~ 331 (337)
T 1gxr_A 327 DKKAT 331 (337)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 99874
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.70 E-value=4.8e-05 Score=53.10 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=53.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|- .+.+|+.+.+ .|.||++.......+++.+.. .+...+.+++|+.+ ..+|++|+.
T Consensus 97 ~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~----~~~l~~~~~ 166 (377)
T 3dwl_C 97 LRLNRAATFVRWSPN-----EDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPN----NVLLAAGCA 166 (377)
T ss_dssp CCCSSCEEEEECCTT-----SSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTT----SSEEEEEES
T ss_pred cccCCceEEEEECCC-----CCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCC----CCEEEEEeC
Confidence 568899999999982 4457777665 699999988755445666643 26788999999976 357999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 167 d~~i~ 171 (377)
T 3dwl_C 167 DRKAY 171 (377)
T ss_dssp SSCEE
T ss_pred CCEEE
Confidence 99875
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.68 E-value=0.00036 Score=48.35 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=56.7
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEE---EE-----cCCCCCceeEEEEeecCCC
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQC---YA-----DPDIEENFYTCAWSMDLES 73 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~---~~-----d~d~~e~~y~~aWs~d~~~ 73 (88)
+...|..++.+++|+|. ..+.+|+.+.+ .|.||++........++. .. ...+...+.+++|+.+ +
T Consensus 38 ~~~~h~~~v~~~~~s~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 111 (408)
T 4a11_B 38 VERIHGGGINTLDIEPV----EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--D 111 (408)
T ss_dssp ECCCCSSCEEEEEECTT----TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--C
T ss_pred eeeccCCcEEEEEEecC----CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--C
Confidence 34569999999999984 25678888766 599999988654333321 11 0247889999999975 2
Q ss_pred CceEEEEecCCcEeC
Q psy8253 74 GRPLLAVAGSRAVIR 88 (88)
Q Consensus 74 ~~plLa~aG~~G~Ir 88 (88)
..+|++++.+|.|+
T Consensus 112 -~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 112 -TGMFTSSSFDKTLK 125 (408)
T ss_dssp -TTCEEEEETTSEEE
T ss_pred -CcEEEEEeCCCeEE
Confidence 34699999999874
No 76
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.68 E-value=0.0002 Score=51.76 Aligned_cols=70 Identities=7% Similarity=0.192 Sum_probs=53.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++.+++|+|- .+.++++|.+ .|.|+++.....+ +.+. .+...+.+++|+.+ .++||+||.
T Consensus 335 ~~h~~~v~~v~~~~~-----g~~l~s~s~D~~i~vwd~~~~~~~---~~~~--~h~~~v~~l~~~~~----~~~l~sgs~ 400 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSG-----GKFILSCADDKTLRVWDYKNKRCM---KTLN--AHEHFVTSLDFHKT----APYVVTGSV 400 (410)
T ss_dssp ECCSSCEEEEEECSS-----SSCEEEEETTTEEEEECCTTSCCC---EEEE--CCSSCEEEEEECSS----SSCEEEEET
T ss_pred ECCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceE---EEEc--CCCCcEEEEEEcCC----CCEEEEEeC
Confidence 458889999999872 4567777776 5999998765333 3332 36778999999977 467999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 401 D~~i~ 405 (410)
T 1vyh_C 401 DQTVK 405 (410)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 99986
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.0004 Score=46.55 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=52.8
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++.+++| |- .+.+|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ ..+|++|+
T Consensus 14 l~~h~~~v~~~~~-~~-----~~~l~s~~~dg~v~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~ 78 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VD-----DSKVASVSRDGTVRLWSKDDQ---WLGTVVY--TGQGFLNSVCYDSE----KELLLFGG 78 (313)
T ss_dssp ECCCSSCEEEEEE-EE-----TTEEEEEETTSEEEEEEESSS---EEEEEEE--ECSSCEEEEEEETT----TTEEEEEE
T ss_pred hhCCCCCcEEEEe-cC-----CCEEEEEEcCCcEEEEECCCC---EEEEEee--cCCccEEEEEECCC----CCEEEEec
Confidence 4679999999999 52 4457777776 5999999664 4444443 25788999999986 35699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 79 ~dg~i~ 84 (313)
T 3odt_A 79 KDTMIN 84 (313)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 999874
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.63 E-value=0.00035 Score=49.81 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=51.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEe-C--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATV-G--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtv-G--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
+++.++.+++|+|. .+.++++ | .+.|.||++... +..+.+.-..+...+.+++|+.+ ..+|++||
T Consensus 301 ~~~~~v~~~~~s~~-----~~~l~~~~g~~dg~i~v~~~~~~---~~~~~~~~~~h~~~v~~~~~s~d----g~~l~s~~ 368 (401)
T 4aez_A 301 DAGSQVTSLIWSPH-----SKEIMSTHGFPDNNLSIWSYSSS---GLTKQVDIPAHDTRVLYSALSPD----GRILSTAA 368 (401)
T ss_dssp ECSSCEEEEEECSS-----SSEEEEEECTTTCEEEEEEEETT---EEEEEEEEECCSSCCCEEEECTT----SSEEEEEC
T ss_pred eCCCcEEEEEECCC-----CCeEEEEeecCCCcEEEEecCCc---cceeEEEecCCCCCEEEEEECCC----CCEEEEEe
Confidence 36678999999883 3445555 4 568999999875 33333332357788999999987 35799999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 369 ~dg~i~ 374 (401)
T 4aez_A 369 SDENLK 374 (401)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 999885
No 79
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.61 E-value=0.00065 Score=46.15 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=55.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|...+..++|.+.. ...+++++|.+ .|.+++.... ++++.+. .+...+.+++|+.+ ..+|++||.
T Consensus 168 ~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~s~ 235 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANC---KLKTNHI--GHTGYLNTVTVSPD----GSLCASGGK 235 (340)
T ss_dssp SSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred ccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCC---ceeeEec--CCCCcEEEEEECCC----CCEEEEEeC
Confidence 4577889999998754 46678888776 5999998775 5566553 46778999999976 357999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 236 Dg~i~ 240 (340)
T 4aow_A 236 DGQAM 240 (340)
T ss_dssp TCEEE
T ss_pred CCeEE
Confidence 99885
No 80
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.61 E-value=0.0002 Score=52.62 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=53.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- .+++|++|.+ .|.||+.+ . +.++.+. .+...+.+++|+.| ++ +|++||.
T Consensus 505 ~~h~~~v~~l~~s~d-----g~~l~s~~~dg~v~lwd~~-~---~~~~~~~--~h~~~v~~~~fs~d---g~-~l~s~~~ 569 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPD-----GQTIASASDDKTVKLWNRN-G---QLLQTLT--GHSSSVWGVAFSPD---GQ-TIASASS 569 (577)
T ss_dssp ECCSSCEEEEEECTT-----SSCEEEEETTSEEEEECTT-S---CEEEEEE--CCSSCEEEEEECTT---SS-CEEEEET
T ss_pred eCCCCCEEEEEEcCC-----CCEEEEEECcCEEEEEeCC-C---CEEEEEc--CCCCCEEEEEEcCC---CC-EEEEEeC
Confidence 568889999999983 4568888876 59999853 2 4556654 46788999999987 33 5889999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
||.||
T Consensus 570 D~~i~ 574 (577)
T 2ymu_A 570 DKTVK 574 (577)
T ss_dssp TSCEE
T ss_pred CCEEE
Confidence 99885
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.58 E-value=0.00037 Score=53.43 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=55.7
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|...+.+++|+| ..+.+|+.|.+ .|.|+++... +.++.+. .+...+.+++|+.+ ..+|++||.
T Consensus 427 ~~h~~~v~~v~~s~-----~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~s~ 492 (694)
T 3dm0_A 427 TGHSHFVEDVVLSS-----DGQFALSGSWDGELRLWDLAAG---VSTRRFV--GHTKDVLSVAFSLD----NRQIVSASR 492 (694)
T ss_dssp ECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEECTT----SSCEEEEET
T ss_pred cCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEECCCC---cceeEEe--CCCCCEEEEEEeCC----CCEEEEEeC
Confidence 56889999999998 35678888866 6999999876 4555554 47788999999977 345999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 493 D~~i~ 497 (694)
T 3dm0_A 493 DRTIK 497 (694)
T ss_dssp TSCEE
T ss_pred CCEEE
Confidence 99885
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00057 Score=48.74 Aligned_cols=73 Identities=4% Similarity=0.003 Sum_probs=56.4
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
|..++.+++|+|. .+.+|+.+.+. |.||++... +.++.+.. .+...+.+++|+..-.....+|++|+.+|
T Consensus 213 h~~~v~~~~~s~~-----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 213 RHGAVSSICIDEE-----CCVLILGTTRGIIDIWDIRFN---VLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp GGCCEEEEEECTT-----SCEEEEEETTSCEEEEETTTT---EEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred CCCceEEEEECCC-----CCEEEEEcCCCeEEEEEcCCc---cEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 7789999999874 56688777764 999999875 66777653 24568999999876333456899999999
Q ss_pred EeC
Q psy8253 86 VIR 88 (88)
Q Consensus 86 ~Ir 88 (88)
.||
T Consensus 284 ~i~ 286 (437)
T 3gre_A 284 FLT 286 (437)
T ss_dssp EEE
T ss_pred cEE
Confidence 885
No 83
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00019 Score=49.89 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=48.8
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEc----CCCCC---eeEEEEEEcC--------CCCCceeEEEEeec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYEC----PDGGS---IKLLQCYADP--------DIEENFYTCAWSMD 70 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~----~~~~~---~~~l~~~~d~--------d~~e~~y~~aWs~d 70 (88)
|..++.+++|+|.. ..++|+.+. +.|.||++ ..... +..+..+..+ .+...+.+++|+.+
T Consensus 44 ~~~~v~~~~~s~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 44 KLDNIVSSTWNPLD----ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp ECSCCSEEEECSSC----TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred ccCceEEEEECCCC----CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 45799999999853 237888887 47999999 55431 1123333321 14668999999986
Q ss_pred CCCCceEEEEecCCcEeC
Q psy8253 71 LESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 71 ~~~~~plLa~aG~~G~Ir 88 (88)
..+|++|+.+|.|+
T Consensus 120 ----~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 120 ----GNSIVTGVENGELR 133 (425)
T ss_dssp ----SSEEEEEETTSCEE
T ss_pred ----CCEEEEEeCCCeEE
Confidence 35699999999774
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.57 E-value=0.00027 Score=50.87 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 23 DQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 23 ~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
...+++|+.-++.|.|++.... ++++.+.-..+.+.+.+++|+.+ ..+||+|+.+|.|+
T Consensus 114 S~~n~lAvgld~tV~lWd~~tg---~~~~~~~~~~~~~~V~sv~fspd----g~~lasgs~Dg~v~ 172 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASSG---DILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQ 172 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTTC---CEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCEEEEEECCCC---CEEEEEEecCCCCcEEEEEECCC----CCEEEEEECCCeEE
Confidence 3467899888889999998876 55666655567888999999987 34699999999875
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00029 Score=55.18 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=55.2
Q ss_pred ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
+.+.|..+|.+++|+|. .+.+|+.|.+ .|.||++..+ ..+.++.+. .+...+.+++|+.+ ....+|++|
T Consensus 4 ~l~gH~~~V~~l~~s~d-----g~~latg~~dg~I~vwd~~~~-~~~~~~~l~--~h~~~V~~l~~s~~--~~~~~l~s~ 73 (753)
T 3jro_A 4 IANAHNELIHDAVLDYY-----GKRLATCSSDKTIKIFEVEGE-THKLIDTLT--GHEGPVWRVDWAHP--KFGTILASC 73 (753)
T ss_dssp ----CCCCEEEECCCSS-----SCCEEEEETTTEEEEEEEETT-EEEEEEEEC--CCSSCEEEEEECCT--TSCSEEEEE
T ss_pred ecccCcceeEEEEECCC-----CCeEEEEECCCcEEEEecCCC-CCccceecc--CCcCceEEEEecCC--CCCCEEEEE
Confidence 46789999999999984 3457777655 6999998753 235555553 47888999999987 224579999
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
|.+|.|+
T Consensus 74 s~Dg~I~ 80 (753)
T 3jro_A 74 SYDGKVL 80 (753)
T ss_dssp ETTSCEE
T ss_pred eCCCeEE
Confidence 9999885
No 86
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.55 E-value=0.00043 Score=55.75 Aligned_cols=70 Identities=19% Similarity=0.414 Sum_probs=55.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|...+++++|+| ..+.+|++|.+ .|.||+.... +.++.+. .+...+.+++|+.+ ..+||+||.
T Consensus 612 ~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~~~ 677 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-----DGQRIASCGADKTLQVFKAETG---EKLLDIK--AHEDEVLCCAFSSD----DSYIATCSA 677 (1249)
T ss_dssp CCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred ecccccEEEEEECC-----CCCEEEEEeCCCeEEEEECCCC---CEEEEec--cCCCCEEEEEEecC----CCEEEEEeC
Confidence 56889999999998 35678888876 5999999886 4444443 57889999999987 357999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 678 d~~v~ 682 (1249)
T 3sfz_A 678 DKKVK 682 (1249)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 99875
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.55 E-value=0.00036 Score=50.52 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=56.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-----------eeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-----------IKLLQCYADPDIEENFYTCAWSMDLE 72 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-----------~~~l~~~~d~d~~e~~y~~aWs~d~~ 72 (88)
+.|..++.+++|+|.. ..++|+.|.+ +|.||++...+. .+++..+ ..+...+++++|+.+
T Consensus 318 ~~h~~~v~~i~~sp~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~-- 389 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHN----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPN-- 389 (430)
T ss_dssp ECCSSCEEEEEECSSC----TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEECSS--
T ss_pred ecCCCCEEEEEECCCC----CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEECCC--
Confidence 4688999999999853 4678888765 799999987321 2455544 346778999999987
Q ss_pred CCceEEEEecCCcEeC
Q psy8253 73 SGRPLLAVAGSRAVIR 88 (88)
Q Consensus 73 ~~~plLa~aG~~G~Ir 88 (88)
+.-+|++++.+|.|+
T Consensus 390 -~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 390 -EPWIICSVSEDNIMQ 404 (430)
T ss_dssp -STTEEEEEETTSEEE
T ss_pred -CCCEEEEEECCCCEE
Confidence 233899999999874
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.55 E-value=0.00067 Score=47.54 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=52.4
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.|..++.+++|+|.. ...+|+++.+ .|.|+++.. +.++.+.. ...+..+.+++|+.+ ..+|++|+.
T Consensus 116 ~h~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~ 183 (383)
T 3ei3_B 116 GPGDAITGMKFNQFN----TNQLFVSSIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVS----RQMLATGDS 183 (383)
T ss_dssp STTCBEEEEEEETTE----EEEEEEEETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETT----TTEEEEEET
T ss_pred CcCCceeEEEeCCCC----CCEEEEEeCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCC----CCEEEEECC
Confidence 588999999999853 4567777765 699999984 22333322 234678999999976 347999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 184 d~~i~ 188 (383)
T 3ei3_B 184 TGRLL 188 (383)
T ss_dssp TSEEE
T ss_pred CCCEE
Confidence 99874
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.52 E-value=0.00044 Score=50.72 Aligned_cols=73 Identities=8% Similarity=0.041 Sum_probs=56.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-CeeEEEEEEcCCCCCc-eeEEEEee--cCCCCceEEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-SIKLLQCYADPDIEEN-FYTCAWSM--DLESGRPLLAV 80 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-~~~~l~~~~d~d~~e~-~y~~aWs~--d~~~~~plLa~ 80 (88)
..|...+.+++|+|- .+.+|+.+++.|.||++.... +.+.++.+. .+.+. +.+++|+. + ..+||+
T Consensus 15 ~~~~~~v~~~~~spd-----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~sp~~~----~~~l~s 83 (615)
T 1pgu_A 15 STQRNFTTHLSYDPT-----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFSPIKG----SQYLCS 83 (615)
T ss_dssp CCCTTCCCCCEEETT-----TTEEEEEETTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEECSSTT----CCEEEE
T ss_pred CCccCceeEEEECCC-----CCEEEEecCCeEEEEECCCCCCccccceEEe--cCCCceEEEEEECcCCC----CCEEEE
Confidence 457788999999983 457888889999999998641 234555553 46778 99999998 6 357999
Q ss_pred ecCCcEeC
Q psy8253 81 AGSRAVIR 88 (88)
Q Consensus 81 aG~~G~Ir 88 (88)
|+.+|.|+
T Consensus 84 ~~~dg~v~ 91 (615)
T 1pgu_A 84 GDESGKVI 91 (615)
T ss_dssp EETTSEEE
T ss_pred ecCCCEEE
Confidence 99999885
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.49 E-value=0.00084 Score=47.83 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=52.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeC---CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG---SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG---~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
.+.|..++.+++|+|.. ..++|+.| .+.|.+|++... +.++.+. ....+.+++|+.+ + .+|++
T Consensus 255 ~~~~~~~v~~~~~~p~~----~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~---~~~~v~~~~~s~~---~-~~l~~ 320 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQ----SNLLATGGGTMDKQIHFWNAATG---ARVNTVD---AGSQVTSLIWSPH---S-KEIMS 320 (401)
T ss_dssp ECCCSSCCCEEEECTTS----TTEEEEECCTTTCEEEEEETTTC---CEEEEEE---CSSCEEEEEECSS---S-SEEEE
T ss_pred ecCCcceEEEEEECCCC----CCEEEEecCCCCCEEEEEECCCC---CEEEEEe---CCCcEEEEEECCC---C-CeEEE
Confidence 35688899999999843 56888887 568999999876 4555553 4677999999987 3 34555
Q ss_pred --ecCCcEeC
Q psy8253 81 --AGSRAVIR 88 (88)
Q Consensus 81 --aG~~G~Ir 88 (88)
|+.+|.|+
T Consensus 321 ~~g~~dg~i~ 330 (401)
T 4aez_A 321 THGFPDNNLS 330 (401)
T ss_dssp EECTTTCEEE
T ss_pred EeecCCCcEE
Confidence 44788874
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0003 Score=49.15 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=49.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC-C
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS-R 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~-~ 84 (88)
.|..++.+++|+|- ...+|+.+.+.|.|+++.....+..++.+.+....-.-.+++|+.+ + .+|++++. +
T Consensus 212 ~h~~~v~~l~fs~~-----g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~l~~~s~~d 282 (343)
T 3lrv_A 212 DEEAKIKEVKFADN-----GYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS---G-KNMIAYSNES 282 (343)
T ss_dssp CTTSCEEEEEECTT-----SSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT---S-SEEEEEETTT
T ss_pred cCCCCEEEEEEeCC-----CCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCC---C-CEEEEecCCC
Confidence 38899999999983 4678888888999999988755555554432111111156888876 3 45777655 7
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
+.|+
T Consensus 283 ~~i~ 286 (343)
T 3lrv_A 283 NSLT 286 (343)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7663
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00039 Score=55.01 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCC---CCceeEEEEeecCCCCceEEEEec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDI---EENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~---~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
|...+.+|+|+| ..+.+|+.+.+ .|.|++... ++..+. .+. ...+.+++||.| ..+||+||
T Consensus 84 ~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPD----G~~LAsgs 148 (588)
T 2j04_A 84 PVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPI----ESSIVVGN 148 (588)
T ss_dssp CSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSS----SSCEEEEE
T ss_pred CCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCC----CCEEEEEc
Confidence 445677777777 34557777666 478887322 444443 221 457999999988 34599999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 149 ~DGtVk 154 (588)
T 2j04_A 149 EDGELQ 154 (588)
T ss_dssp TTSEEE
T ss_pred CCCEEE
Confidence 999985
No 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0016 Score=45.47 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=55.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCC----CCCceeEEEEeecCCCCceEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPD----IEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d----~~e~~y~~aWs~d~~~~~plLa 79 (88)
..|..++.+++|+|.. ..++|+.+.+ .|.||++... +.++.+.... +...+.+++|+.+ +..+|+
T Consensus 162 ~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~ 231 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSL----AHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPK---NSTRVA 231 (416)
T ss_dssp CCSSCCCCEEEECSSC----TTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSS---CTTEEE
T ss_pred cCCCCCeeEEEeCCCC----CcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCC---CCCEEE
Confidence 4688899999999842 5678888776 5999999876 5555554321 1788999999977 345799
Q ss_pred EecCCc---EeC
Q psy8253 80 VAGSRA---VIR 88 (88)
Q Consensus 80 ~aG~~G---~Ir 88 (88)
+++.+| .|+
T Consensus 232 ~~~~d~~~~~i~ 243 (416)
T 2pm9_A 232 TATGSDNDPSIL 243 (416)
T ss_dssp EEECCSSSCCCC
T ss_pred EEECCCCCceEE
Confidence 999887 664
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00071 Score=49.05 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=52.3
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCC-----------------------------
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDI----------------------------- 58 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~----------------------------- 58 (88)
..|+..++|+|-. +++++..++.|.||++..+..++.+..+.+...
T Consensus 4 ~~p~~~v~~s~dg-----~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 4 IHPLQNLLTSRDG-----SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp ECCCCEEEECSSS-----SEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred cccEEEEEecCCC-----CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 3588899988743 366666788999999987754556776654211
Q ss_pred -----------------------CCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 59 -----------------------EENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 59 -----------------------~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
...+.+++|+.+ +.-|+++|+.+|.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~dg~v~ 128 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---ESRLIACADSDKSLL 128 (450)
T ss_dssp ---------------------CCCCCEEEEEECTT---SSEEEEEEGGGTEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCC---CCEEEEEECCCCeEE
Confidence 115999999987 455569999999874
No 95
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.43 E-value=0.001 Score=47.57 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.+.|..++++++|+|- .+.+++++.+ .|.|+++... +.+..+. ....+.+++|+.. ++ .+|++|+
T Consensus 161 ~~~h~~~v~~~~~~p~-----~~~l~s~s~d~~v~iwd~~~~---~~~~~~~---~~~~v~~~~~~~~--~~-~~l~~~s 226 (393)
T 1erj_A 161 LQGHEQDIYSLDYFPS-----GDKLVSGSGDRTVRIWDLRTG---QCSLTLS---IEDGVTTVAVSPG--DG-KYIAAGS 226 (393)
T ss_dssp ECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTT---EEEEEEE---CSSCEEEEEECST--TC-CEEEEEE
T ss_pred EccCCCCEEEEEEcCC-----CCEEEEecCCCcEEEEECCCC---eeEEEEE---cCCCcEEEEEECC--CC-CEEEEEc
Confidence 3568899999999983 3467777665 6999998775 4444443 4567899999974 23 4699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.||
T Consensus 227 ~d~~v~ 232 (393)
T 1erj_A 227 LDRAVR 232 (393)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 999875
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.42 E-value=0.0011 Score=45.79 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=55.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..++.+++|+|.. ..+|++++. +.|.|+++... +.++.+. ..+...+++|+.... ...+|++|+.+
T Consensus 97 ~~~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~ 165 (408)
T 4a11_B 97 VHRYSVETVQWYPHD----TGMFTSSSFDKTLKVWDTNTL---QTADVFN---FEETVYSHHMSPVST-KHCLVAVGTRG 165 (408)
T ss_dssp CCSSCEEEEEECTTC----TTCEEEEETTSEEEEEETTTT---EEEEEEE---CSSCEEEEEECSSCS-SCCEEEEEESS
T ss_pred cCCCcEEEEEEccCC----CcEEEEEeCCCeEEEeeCCCC---ccceecc---CCCceeeeEeecCCC-CCcEEEEEcCC
Confidence 489999999999843 456888875 47999999876 5666663 577899999998743 24579999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 166 ~~v~ 169 (408)
T 4a11_B 166 PKVQ 169 (408)
T ss_dssp SSEE
T ss_pred CeEE
Confidence 8774
No 97
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.42 E-value=0.00082 Score=49.30 Aligned_cols=75 Identities=8% Similarity=-0.006 Sum_probs=55.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC------CCceE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE------SGRPL 77 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~------~~~pl 77 (88)
..|..++.+++|+|- .+.+|+.+.+ .|.||++... +.++.+.. .+...+.+++|+.... ....+
T Consensus 485 ~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~ 555 (615)
T 1pgu_A 485 TPLRAKPSYISISPS-----ETYIAAGDVMGKILLYDLQSR---EVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDL 555 (615)
T ss_dssp SCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEECCSC-CCSSCEEEEEECCCC------CCSCCE
T ss_pred CCccCceEEEEECCC-----CCEEEEcCCCCeEEEeeCCCC---cceeEeec-CCCCceeEEEEcCccccccccccCCCE
Confidence 568889999999883 4578888765 7999999876 55554421 1678899999998210 02467
Q ss_pred EEEecCCcEeC
Q psy8253 78 LAVAGSRAVIR 88 (88)
Q Consensus 78 La~aG~~G~Ir 88 (88)
||+|+.+|.|+
T Consensus 556 l~~~~~dg~i~ 566 (615)
T 1pgu_A 556 VATGSLDTNIF 566 (615)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEcCCCcEE
Confidence 99999999885
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.41 E-value=0.0011 Score=47.67 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
+...+.++.|+|-. ..++++.| .+.|.|++.... +.++.+. .+...+.+++|+.| + .+||+||.|
T Consensus 319 ~~~~v~~~~~~~~~----~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~--gH~~~V~~l~~spd---g-~~l~S~s~D 385 (420)
T 4gga_A 319 AHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPTM---AKVAELK--GHTSRVLSLTMSPD---G-ATVASAAAD 385 (420)
T ss_dssp CSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT---S-SCEEEEETT
T ss_pred cccceeeeeecCCC----CeEEEEEecCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC---C-CEEEEEecC
Confidence 44567788887743 44555554 357999999875 4555553 47788999999987 2 459999999
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.||
T Consensus 386 ~tvr 389 (420)
T 4gga_A 386 ETLR 389 (420)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 9986
No 99
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.40 E-value=0.0011 Score=50.70 Aligned_cols=70 Identities=9% Similarity=0.189 Sum_probs=54.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- .+.+|+.+.+ .|.||++... +.++.+. .+...+.+++|+.+ .++|++|+.
T Consensus 52 ~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~~~~~ 117 (814)
T 3mkq_A 52 QVTETPVRAGKFIAR-----KNWIIVGSDDFRIRVFNYNTG---EKVVDFE--AHPDYIRSIAVHPT----KPYVLSGSD 117 (814)
T ss_dssp ECCSSCEEEEEEEGG-----GTEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS----SSEEEEEET
T ss_pred ecCCCcEEEEEEeCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEEe--cCCCCEEEEEEeCC----CCEEEEEcC
Confidence 468889999999993 4567777765 7999999876 3444443 36778999999987 457999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 118 dg~i~ 122 (814)
T 3mkq_A 118 DLTVK 122 (814)
T ss_dssp TSEEE
T ss_pred CCEEE
Confidence 99874
No 100
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.001 Score=53.64 Aligned_cols=71 Identities=8% Similarity=-0.050 Sum_probs=54.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--------------------------------------
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-------------------------------------- 46 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-------------------------------------- 46 (88)
.|...+.+|+|+|- .+.+|+.+.+ .|.||++.....
T Consensus 486 ~h~~~V~svafspd-----g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 486 AKELAVDKISFAAE-----TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp SSSCCEEEEEEETT-----TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred CCCCceeEEEecCC-----CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 68889999999993 4678888876 699999875410
Q ss_pred ----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 47 ----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 47 ----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++.++... .+...+.+++||.| | +||+|+.+|.||
T Consensus 561 ~~~g~~~~~~l~--~h~~~V~svafSpd---G--~lAsgs~D~tv~ 599 (902)
T 2oaj_A 561 VRQGFMPSTAVH--ANKGKTSAINNSNI---G--FVGIAYAAGSLM 599 (902)
T ss_dssp CSEEEEEEEEEC--CCSCSEEEEEECBT---S--EEEEEETTSEEE
T ss_pred CCCccceeEEEE--cCCCcEEEEEecCC---c--EEEEEeCCCcEE
Confidence 12344442 47889999999976 4 799999999875
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0012 Score=51.65 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=58.2
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
...|..++.+++|+|-. ..+.+|+++.+ .|.|+++..+. ...++.+. .+...+.+++|+.+ ....+|++|+
T Consensus 49 l~~h~~~V~~l~~s~~~---~~~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~--~h~~~V~~v~~sp~--~~~~~l~sgs 120 (753)
T 3jro_A 49 LTGHEGPVWRVDWAHPK---FGTILASCSYDGKVLIWKEENGR-WSQIAVHA--VHSASVNSVQWAPH--EYGPLLLVAS 120 (753)
T ss_dssp ECCCSSCEEEEEECCTT---SCSEEEEEETTSCEEEEEEETTE-EEEEEEEC--CCSSCEEEEEECCG--GGCSEEEEEE
T ss_pred ccCCcCceEEEEecCCC---CCCEEEEEeCCCeEEEEECCCCc-cccccccc--CCCCCeEEEEECCC--CCCCEEEEEe
Confidence 35688999999999853 35788888876 69999988752 33444442 47788999999987 3245699999
Q ss_pred CCcEeC
Q psy8253 83 SRAVIR 88 (88)
Q Consensus 83 ~~G~Ir 88 (88)
.+|.|+
T Consensus 121 ~dg~I~ 126 (753)
T 3jro_A 121 SDGKVS 126 (753)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 999885
No 102
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0022 Score=43.65 Aligned_cols=69 Identities=7% Similarity=0.190 Sum_probs=52.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|. .+.+|+++.+ .|.|+++... +.++.+. ....+.+++|+.+ ..+|++++.
T Consensus 71 ~~h~~~v~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~v~~~~~~~~----~~~l~~~~~ 135 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCF-----TKYCVTGSADYSIKLWDVSNG---QCVATWK---SPVPVKRVEFSPC----GNYFLAILD 135 (369)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTTEEEEEETTTC---CEEEEEE---CSSCEEEEEECTT----SSEEEEEEC
T ss_pred hhcCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEee---cCCCeEEEEEccC----CCEEEEecC
Confidence 568889999999982 4577888766 6999999876 5556664 5678999999976 345777777
Q ss_pred C-----cEeC
Q psy8253 84 R-----AVIR 88 (88)
Q Consensus 84 ~-----G~Ir 88 (88)
+ |.|+
T Consensus 136 ~~~~~~g~i~ 145 (369)
T 3zwl_B 136 NVMKNPGSIN 145 (369)
T ss_dssp CBTTBCCEEE
T ss_pred CccCCCCEEE
Confidence 7 7663
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.34 E-value=0.0014 Score=52.74 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=57.1
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- .+.+|+++.+ .|.|+++... +.++.+. .+...+.+++|+.+ ....+|++|+.
T Consensus 654 ~~h~~~v~~~~~s~~-----~~~l~s~~~d~~v~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~--~~~~~l~sg~~ 721 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSD-----DSYIATCSADKKVKIWDSATG---KLVHTYD--EHSEQVNCCHFTNK--SNHLLLATGSN 721 (1249)
T ss_dssp CCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS--SSCCEEEEEET
T ss_pred ccCCCCEEEEEEecC-----CCEEEEEeCCCeEEEEECCCC---ceEEEEc--CCCCcEEEEEEecC--CCceEEEEEeC
Confidence 468899999999983 4578888765 6999999876 5566664 46888999999986 44678999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 722 d~~v~ 726 (1249)
T 3sfz_A 722 DFFLK 726 (1249)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 99874
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0014 Score=47.50 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=50.5
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcC--CCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECP--DGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~--~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
|..++.+++|+|-. ..++|+.+. +.|.||++. ....+..+... .....+.+++|+.+ ..+|++|+.
T Consensus 101 ~~~~v~~~~~s~d~----~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~----~~~l~~~~~ 169 (450)
T 2vdu_B 101 IYSYIRNLRLTSDE----SRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAED----DTTVIIADK 169 (450)
T ss_dssp CCCCEEEEEECTTS----SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTT----SSEEEEEET
T ss_pred cCCceEEEEEcCCC----CEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCC----CCEEEEEeC
Confidence 45579999999832 333477654 579999998 44345555442 35678999999976 356899998
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 170 ~g~v~ 174 (450)
T 2vdu_B 170 FGDVY 174 (450)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 88874
No 105
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0019 Score=43.19 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|-. . +++.+ .+.|.||++... +.++.+.. +...+.+++|+.+. . |++|+.
T Consensus 222 ~~~~~~i~~~~~~~~~-----~-l~~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~i~~~~~~~~~----~-~~~~~~ 285 (313)
T 3odt_A 222 EGHESFVYCIKLLPNG-----D-IVSCGEDRTVRIWSKENG---SLKQVITL--PAISIWSVDCMSNG----D-IIVGSS 285 (313)
T ss_dssp ECCSSCEEEEEECTTS-----C-EEEEETTSEEEEECTTTC---CEEEEEEC--SSSCEEEEEECTTS----C-EEEEET
T ss_pred hcCCceEEEEEEecCC-----C-EEEEecCCEEEEEECCCC---ceeEEEec--cCceEEEEEEccCC----C-EEEEeC
Confidence 4688899999999843 3 45555 457999998876 45555543 46689999999872 2 667899
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 286 dg~i~ 290 (313)
T 3odt_A 286 DNLVR 290 (313)
T ss_dssp TSCEE
T ss_pred CCcEE
Confidence 99875
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.26 E-value=0.0018 Score=46.22 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=50.1
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
+|..++++++|+| +.+.+|+++.+.+.++...... .+.......+...+.+++|+.+ ..+|++++.++
T Consensus 174 ~~~~~V~~v~fsp-----dg~~l~s~s~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~v~fspd----g~~l~~~s~d~ 241 (365)
T 4h5i_A 174 ETRGEVKDLHFST-----DGKVVAYITGSSLEVISTVTGS---CIARKTDFDKNWSLSKINFIAD----DTVLIAASLKK 241 (365)
T ss_dssp ECSSCCCEEEECT-----TSSEEEEECSSCEEEEETTTCC---EEEEECCCCTTEEEEEEEEEET----TEEEEEEEESS
T ss_pred CCCCceEEEEEcc-----CCceEEeccceeEEEEEeccCc---ceeeeecCCCCCCEEEEEEcCC----CCEEEEEecCC
Confidence 4778899999998 3568999999999999988763 2222233357888999999987 34566666554
No 107
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0036 Score=43.35 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- . .+++.+.+ .|.||++... +.++.+. .+...+.+++|+.+ ..+|++|+.
T Consensus 286 ~~~~~~i~~~~~~~~-----~-~l~~~~~d~~i~i~d~~~~---~~~~~~~--~~~~~i~~~~~s~~----~~~l~~~~~ 350 (425)
T 1r5m_A 286 YGHSQSIVSASWVGD-----D-KVISCSMDGSVRLWSLKQN---TLLALSI--VDGVPIFAGRISQD----GQKYAVAFM 350 (425)
T ss_dssp CCCSSCEEEEEEETT-----T-EEEEEETTSEEEEEETTTT---EEEEEEE--CTTCCEEEEEECTT----SSEEEEEET
T ss_pred cCCCccEEEEEECCC-----C-EEEEEeCCCcEEEEECCCC---cEeEecc--cCCccEEEEEEcCC----CCEEEEEEC
Confidence 458889999999982 2 56666655 7999999775 5566554 35678999999976 357999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 351 dg~i~ 355 (425)
T 1r5m_A 351 DGQVN 355 (425)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 99874
No 108
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.22 E-value=0.0035 Score=44.93 Aligned_cols=71 Identities=7% Similarity=0.151 Sum_probs=55.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|+|- . .+++.+.+ .|.|+++... +.++.+. .+...+.+++|+..+ +..+|++|+.
T Consensus 159 ~~h~~~V~~l~~~~~-----~-~l~s~s~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~--~~~~l~s~s~ 225 (464)
T 3v7d_B 159 SGHDGGVWALKYAHG-----G-ILVSGSTDRTVRVWDIKKG---CCTHVFE--GHNSTVRCLDIVEYK--NIKYIVTGSR 225 (464)
T ss_dssp CCCSSCEEEEEECST-----T-EEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEEESS--SCEEEEEEET
T ss_pred eCCCcCEEEEEEcCC-----C-EEEEEeCCCCEEEEECCCC---cEEEEEC--CCCCccEEEEEecCC--CCCEEEEEcC
Confidence 468899999999752 2 67777776 6999999876 5566663 478899999999762 3567999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 226 d~~i~ 230 (464)
T 3v7d_B 226 DNTLH 230 (464)
T ss_dssp TSCEE
T ss_pred CCcEE
Confidence 99874
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.13 E-value=0.0018 Score=46.56 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=50.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..++.+++|++ +.+|+.+.+ .|.||++.....+..+...........+.+++|+.+ ..+||+|+.+
T Consensus 360 ~~~~~v~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~la~~~~d 428 (445)
T 2ovr_B 360 KHQSAVTCLQFNK-------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVGSRN 428 (445)
T ss_dssp SCSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS----EEEEEEECSS
T ss_pred CCCCCEEEEEECC-------CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC----EEEEEEcccC
Confidence 4788999999953 567777755 799999988633333333333356788999999965 4679999999
Q ss_pred cE
Q psy8253 85 AV 86 (88)
Q Consensus 85 G~ 86 (88)
|.
T Consensus 429 g~ 430 (445)
T 2ovr_B 429 GT 430 (445)
T ss_dssp SS
T ss_pred CC
Confidence 95
No 110
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.003 Score=48.20 Aligned_cols=76 Identities=7% Similarity=-0.002 Sum_probs=53.6
Q ss_pred cCCCCeEEEEEecCCCC-CCCCEEEEeCCC-eEEEEEcCCCCCe--------eEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253 6 DHGQPLFGAQFNHLLKD-DQPRIFATVGSN-RVSIYECPDGGSI--------KLLQCYADPDIEENFYTCAWSMDLESGR 75 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~-~~~~~fAtvG~~-~v~Vy~~~~~~~~--------~~l~~~~d~d~~e~~y~~aWs~d~~~~~ 75 (88)
.|...+++++|+|.... +...++|+++.+ .|.|+++...... +.+..+ ..+...+.+++|+.+ .
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~----~ 278 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSP----T 278 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSS----S
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCC----C
Confidence 45678999999996321 235789999887 5999999764211 011122 235678999999843 2
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
.||+|+.||.|+
T Consensus 279 -~lasgs~DgtV~ 290 (524)
T 2j04_B 279 -TVVCGFKNGFVA 290 (524)
T ss_dssp -EEEEEETTSEEE
T ss_pred -eEEEEeCCCEEE
Confidence 699999999985
No 111
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0058 Score=49.22 Aligned_cols=75 Identities=3% Similarity=-0.058 Sum_probs=53.2
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEE--Ec--CCCCCceeEEEEeecCCC--C--c
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCY--AD--PDIEENFYTCAWSMDLES--G--R 75 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~--~d--~d~~e~~y~~aWs~d~~~--~--~ 75 (88)
+.|..+|.+++|+| .. .+|+.+.++ |.|++.... .++... .. +.+.+.+.+++|+..... | .
T Consensus 572 ~~h~~~V~svafSp-----dG-~lAsgs~D~tv~lwd~~~~---~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~ 642 (902)
T 2oaj_A 572 HANKGKTSAINNSN-----IG-FVGIAYAAGSLMLIDRRGP---AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS 642 (902)
T ss_dssp CCCSCSEEEEEECB-----TS-EEEEEETTSEEEEEETTTT---EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred EcCCCcEEEEEecC-----Cc-EEEEEeCCCcEEEEECCCC---eEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence 56899999999997 23 688888775 899996443 344321 11 157788999999922111 1 3
Q ss_pred eEEEEecCCcEeC
Q psy8253 76 PLLAVAGSRAVIR 88 (88)
Q Consensus 76 plLa~aG~~G~Ir 88 (88)
.+|++|+.||.||
T Consensus 643 ~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 643 ILMVCGTDMGEVI 655 (902)
T ss_dssp EEEEEEETTSEEE
T ss_pred eEEEEEecCCcEE
Confidence 6899999999986
No 112
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.07 E-value=0.0073 Score=42.36 Aligned_cols=77 Identities=1% Similarity=-0.101 Sum_probs=52.8
Q ss_pred ccCCCCeEEEEEecCCCC----------------CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKD----------------DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAW 67 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~----------------~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aW 67 (88)
+.|..++..++|.|-... ...+.+|+.+.+ .|.||++... +.+..+.. .+...+.+++|
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~-~~~~~v~~~~~ 298 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPS-KFTCSCNSLTV 298 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECC-TTSSCEEEEEE
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEccc-ccCCCceeEEE
Confidence 356778888888653210 235567776665 6999999876 33333322 46778999999
Q ss_pred eecCCCCceEEEEecCCcEeC
Q psy8253 68 SMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 68 s~d~~~~~plLa~aG~~G~Ir 88 (88)
+.+ +..+|++|+.+|.|+
T Consensus 299 ~~~---~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 299 DGN---NANYIYAGYENGMLA 316 (420)
T ss_dssp CSS---CTTEEEEEETTSEEE
T ss_pred eCC---CCCEEEEEeCCCeEE
Confidence 976 344899999999885
No 113
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.00 E-value=0.007 Score=43.34 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=52.4
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++++++|+|- .+.+++.+.+ .|.||++... +.++.+. .+...+.+++|+ ..+|++|+.
T Consensus 307 ~~~~~~v~~~~~~~~-----~~~l~sg~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~------~~~l~s~s~ 370 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHE-----RKRCISASMDTTIRIWDLENG---ELMYTLQ--GHTALVGLLRLS------DKFLVSAAA 370 (464)
T ss_dssp CCCSSCEEEEEEETT-----TTEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEC------SSEEEEEET
T ss_pred cCCCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCC---cEEEEEe--CCCCcEEEEEEc------CCEEEEEeC
Confidence 468889999999982 3457777665 6999999876 5666664 467889999996 246999999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.||
T Consensus 371 dg~v~ 375 (464)
T 3v7d_B 371 DGSIR 375 (464)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 99885
No 114
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0023 Score=48.86 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=48.1
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++++++|+|.. +.||+.+.+ .|.|+.+.....+..+. .+...+++++|+.+ .++||+||.||.||
T Consensus 357 ~v~~v~fsp~~-----~~l~s~~~d~tv~lwd~~~~~~~~~l~-----gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 357 NLVPVVYCPQI-----YSYIYSDGASSLRAVPSRAAFAVHPLV-----SRETTITAIGVSRL----HPMVLAGSADGSLI 422 (524)
T ss_dssp SCCCEEEETTT-----TEEEEECSSSEEEEEETTCTTCCEEEE-----ECSSCEEEEECCSS----CCBCEEEETTTEEE
T ss_pred cccceEeCCCc-----CeEEEeCCCCcEEEEECcccccceeee-----cCCCceEEEEeCCC----CCeEEEEECCCEEE
Confidence 58999999953 347776666 59999987653223332 36778999999976 35699999999985
No 115
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=96.86 E-value=0.0015 Score=48.32 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCCCeEEEEEecCCCCCCCCEEE----EeCCC-eEEEEEcCCC--------CCeeEEEEEEcCCCCCceeEEEEeecCCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFA----TVGSN-RVSIYECPDG--------GSIKLLQCYADPDIEENFYTCAWSMDLES 73 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fA----tvG~~-~v~Vy~~~~~--------~~~~~l~~~~d~d~~e~~y~~aWs~d~~~ 73 (88)
+..++.+++|+|. .+.+| +.+.+ .|.||++... .++..++.+ ..+...+.+++|+.+
T Consensus 91 ~~~~v~~l~~spd-----g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~--- 160 (434)
T 2oit_A 91 MKFPIHHLALSCD-----NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPT--- 160 (434)
T ss_dssp CSSCEEEEEECTT-----SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSS---
T ss_pred CCCcccEEEEcCC-----CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCC---
Confidence 4457999999984 34566 44433 6999998653 122223332 246788999999976
Q ss_pred CceEEEEecCCcEeC
Q psy8253 74 GRPLLAVAGSRAVIR 88 (88)
Q Consensus 74 ~~plLa~aG~~G~Ir 88 (88)
+..+||+|+.+|.||
T Consensus 161 ~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 161 VPSMVAVCLADGSIA 175 (434)
T ss_dssp CTTEEEEEETTSCEE
T ss_pred CCCEEEEEECCCeEE
Confidence 245699999999875
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.72 E-value=0.016 Score=39.23 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=47.7
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee-cCCCCceEEEEecCCc
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM-DLESGRPLLAVAGSRA 85 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~-d~~~~~plLa~aG~~G 85 (88)
|..++.+++|+|-. +++....+.|.+|++...+...... .. ......+.+++|+. + ..+|++|+.+|
T Consensus 149 ~~~~v~~~~~~~~~------l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~~~~i~~i~~~~~~----~~~l~~~~~dg 216 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR------LIVGMNNSQVQWFRLPLCEDDNGTI-EE-SGLKYQIRDVALLPKE----QEGYACSSIDG 216 (342)
T ss_dssp SCCCEEEEEECSSE------EEEEESTTEEEEEESSCCTTCCCEE-EE-CSCSSCEEEEEECSGG----GCEEEEEETTS
T ss_pred eCCceEEEEecCCc------EEEEeCCCeEEEEECCcccccccee-ee-cCCCCceeEEEECCCC----CCEEEEEecCC
Confidence 77899999998632 4444444589999998722211111 11 14567899999998 6 35699999999
Q ss_pred EeC
Q psy8253 86 VIR 88 (88)
Q Consensus 86 ~Ir 88 (88)
.|+
T Consensus 217 ~i~ 219 (342)
T 1yfq_A 217 RVA 219 (342)
T ss_dssp EEE
T ss_pred cEE
Confidence 874
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.72 E-value=0.011 Score=41.79 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=46.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
+.|..++.+++|+| +.+++|+.+.+.+.||++.+. +.+..... .....++|..+ ++-++++||.+
T Consensus 16 ~~h~~~V~~v~fs~-----dg~~la~g~~~~~~iw~~~~~---~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-----DQSCLILSTLKSFEIYNVHPV---AHIMSQEM----RHLSKVRMLHR---TNYVAFVTGVK 80 (355)
T ss_dssp ---CCCCCEEEECT-----TSSEEEEECSSEEEEEEETTE---EEEEEEEC----SCCCEEEECTT---SSEEEEECSST
T ss_pred ccCCCceEEEEECC-----CCCEEEEEcCCEEEEEecCCc---ceeeeeec----CCeEEEEEcCC---CCEEEEEECCc
Confidence 67899999999998 245899888888999998753 44433322 14777888765 23445667777
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
+.||
T Consensus 81 ~~v~ 84 (355)
T 3vu4_A 81 EVVH 84 (355)
T ss_dssp TEEE
T ss_pred cEEE
Confidence 7764
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.52 E-value=0.03 Score=38.90 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
...+.+++|+|- ...++++... +.|.|+++... ++++.+. ......+++|+.+ ++.++++++.+|.
T Consensus 73 ~~~v~~~~~spd----g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~---~~~~~~~~~~s~d---g~~l~~~~~~~~~ 139 (391)
T 1l0q_A 73 GSSPQGVAVSPD----GKQVYVTNMASSTLSVIDTTSN---TVAGTVK---TGKSPLGLALSPD---GKKLYVTNNGDKT 139 (391)
T ss_dssp SSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTT---EEEEEEE---CSSSEEEEEECTT---SSEEEEEETTTTE
T ss_pred CCCccceEECCC----CCEEEEEECCCCEEEEEECCCC---eEEEEEe---CCCCcceEEECCC---CCEEEEEeCCCCE
Confidence 348899999883 2345555443 68999998876 5555553 3457899999977 4565678888887
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
|+
T Consensus 140 v~ 141 (391)
T 1l0q_A 140 VS 141 (391)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.015 Score=46.05 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=51.7
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEE--eecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAW--SMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aW--s~d~~~~~plLa~a 81 (88)
++.|...+.+|+|. .+.+|+.+.+.|.+++.... .+. ...+ .+.+.++.+++ +.| ...|++|
T Consensus 222 ~~~h~~~V~svaFs-------g~~LASa~~~tIkLWd~~~~-~~~-~~~~---gh~~~V~~va~~~s~d----~~~La~a 285 (588)
T 2j04_A 222 QNASRRKITDLKIV-------DYKVVLTCPGYVHKIDLKNY-SIS-SLKT---GSLENFHIIPLNHEKE----STILLMS 285 (588)
T ss_dssp ECCCSSCCCCEEEE-------TTEEEEECSSEEEEEETTTT-EEE-EEEC---SCCSCCCEEEETTCSS----CEEEEEC
T ss_pred cccccCcEEEEEEE-------CCEEEEEeCCeEEEEECCCC-eEE-EEEc---CCCceEEEEEeeeCCC----CCEEEEE
Confidence 34677899999998 27899999999999998874 111 2222 48899999999 655 3669999
Q ss_pred cCCcE
Q psy8253 82 GSRAV 86 (88)
Q Consensus 82 G~~G~ 86 (88)
+++|.
T Consensus 286 ~edG~ 290 (588)
T 2j04_A 286 NKTSY 290 (588)
T ss_dssp SSCEE
T ss_pred cCCCC
Confidence 99997
No 120
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.40 E-value=0.023 Score=40.76 Aligned_cols=69 Identities=13% Similarity=0.294 Sum_probs=49.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+.|..++.+++|++ ..+++++.+ .|.|+++.....+...+... .+...+.+++| + ..+|++|+.
T Consensus 210 ~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~--~----~~~l~s~~~ 274 (435)
T 1p22_A 210 IHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLV--GHRAAVNVVDF--D----DKYIVSASG 274 (435)
T ss_dssp CCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEEC--CCSSCEEEEEE--E----TTEEEEEET
T ss_pred cCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEec--CCCCcEEEEEe--C----CCEEEEEeC
Confidence 45778888888863 367777765 69999998775554444443 46778889998 2 245888888
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 275 dg~i~ 279 (435)
T 1p22_A 275 DRTIK 279 (435)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 88874
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.39 E-value=0.021 Score=40.97 Aligned_cols=66 Identities=8% Similarity=0.178 Sum_probs=47.0
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++++++| +.+.+|+.+.+ .|.|++.... +.++.+. .+...+.+++| + ..+|++|+.
T Consensus 130 ~~~~~~v~~~~~-------d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~--~----~~~l~sg~~ 191 (435)
T 1p22_A 130 SETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTL---ECKRILT--GHTGSVLCLQY--D----ERVIITGSS 191 (435)
T ss_dssp CSSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSC---CEEEEEC--CCSSCEEEEEC--C----SSEEEEEET
T ss_pred cCCCCcEEEEEE-------CCCEEEEEeCCCeEEEEeCCCC---eEEEEEc--CCCCcEEEEEE--C----CCEEEEEcC
Confidence 456677888887 24567776655 6999998765 4455553 46778999998 2 246899999
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 192 dg~i~ 196 (435)
T 1p22_A 192 DSTVR 196 (435)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 98874
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.36 E-value=0.04 Score=38.27 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=47.7
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEe---CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATV---GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtv---G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+...+.+++|+|.. ..++++. +.+.|.+|++... +.++.+.. .....+++|+.+ ++.++++++.
T Consensus 198 ~~~~~~~~~~~~~g----~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d---g~~l~~s~~~ 264 (391)
T 1l0q_A 198 VEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTN---KITARIPV---GPDPAGIAVTPD---GKKVYVALSF 264 (391)
T ss_dssp CSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTT---EEEEEEEC---CSSEEEEEECTT---SSEEEEEETT
T ss_pred cCCCccceEECCCC----CEEEEEecCcCCCcEEEEECCCC---eEEEEEec---CCCccEEEEccC---CCEEEEEcCC
Confidence 45577889998732 3445444 4678999998765 55666643 345788999977 4566678788
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 265 d~~v~ 269 (391)
T 1l0q_A 265 XNTVS 269 (391)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 88774
No 123
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.23 E-value=0.05 Score=38.90 Aligned_cols=66 Identities=9% Similarity=0.194 Sum_probs=48.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
..|..++++++|+ ..++++.+.+ .|.|+++... +.++.+. .+...+.+++|. ...|++|+.
T Consensus 156 ~~h~~~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~------~~~l~s~s~ 217 (445)
T 2ovr_B 156 VGHTGGVWSSQMR-------DNIIISGSTDRTLKVWNAETG---ECIHTLY--GHTSTVRCMHLH------EKRVVSGSR 217 (445)
T ss_dssp CCCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEE------TTEEEEEET
T ss_pred cCCCCCEEEEEec-------CCEEEEEeCCCeEEEEECCcC---cEEEEEC--CCCCcEEEEEec------CCEEEEEeC
Confidence 4688899999997 2477777766 6999999876 5555553 467778888884 234888888
Q ss_pred CcEeC
Q psy8253 84 RAVIR 88 (88)
Q Consensus 84 ~G~Ir 88 (88)
+|.|+
T Consensus 218 dg~i~ 222 (445)
T 2ovr_B 218 DATLR 222 (445)
T ss_dssp TSEEE
T ss_pred CCEEE
Confidence 88774
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.08 E-value=0.061 Score=37.84 Aligned_cols=70 Identities=4% Similarity=-0.124 Sum_probs=50.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|...+.+++|+| ...++++.+. +.|.++++... +.++.+. .+.....+++|+.+ +..++++++.+
T Consensus 167 ~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~---~~~~~~~--~~~~~~~~~~~~~~---~~~l~~~~~~~ 233 (433)
T 3bws_A 167 KKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTL---AYKATVD--LTGKWSKILLYDPI---RDLVYCSNWIS 233 (433)
T ss_dssp TTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTC---CEEEEEE--CSSSSEEEEEEETT---TTEEEEEETTT
T ss_pred ccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCc---eEEEEEc--CCCCCeeEEEEcCC---CCEEEEEecCC
Confidence 5677899999965 3457777765 58999998765 4445553 35677899999976 45555677678
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 234 ~~i~ 237 (433)
T 3bws_A 234 EDIS 237 (433)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8764
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=95.92 E-value=0.042 Score=39.23 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCEEEEeCC--CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 25 PRIFATVGS--NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 25 ~~~fAtvG~--~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
...|++.|+ +.|.|+++.....+..+.. ....+.+++|+.| | .+||+|+.+|++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-----~~~~V~svafspd---G-~~LA~as~~Gv~ 383 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQ-----LGMPIVDFCWHQD---G-SHLAIATEGSVL 383 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEE-----CSSCEEEEEECTT---S-SEEEEEESSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecC-----CCCcEEEEEEcCC---C-CEEEEEeCCCeE
Confidence 556777775 4799999988754433332 4567999999988 3 459999999874
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=95.90 E-value=0.05 Score=40.61 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=37.2
Q ss_pred EEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCcee-EEEEeecCCCCceEEEEecCCcEeC
Q psy8253 27 IFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFY-TCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 27 ~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y-~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
++|+.+.+ .|.|+++... +.++.+.. +..... .++|+.| ..+|++|+.||.||
T Consensus 297 ~lASgS~DgTIkIWDl~tG---k~l~tL~g--H~~~vvs~vafSPD----G~~LaSGS~D~TIk 351 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLG---QCTALLPP--VSDQHWSFVKWSGT----DSHLLAGQKDGNIF 351 (356)
T ss_dssp EEEEEETTSCEEEEETTTC---SEEEEECC--C--CCCCEEEECSS----SSEEEEECTTSCEE
T ss_pred EEEEEcCCCcEEEEECCCC---cEEEEecC--CCCCeEEEEEECCC----CCEEEEEECCCcEE
Confidence 45655544 6999999887 56666642 334444 5899987 35699999999986
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.75 E-value=0.12 Score=36.34 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=44.3
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCC---------------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGS---------------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDL 71 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~---------------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~ 71 (88)
+...+.+++|+|-. ..++++..+ +.|.+++.... ++++.+.. .....+++|+.+
T Consensus 343 ~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d- 411 (433)
T 3bws_A 343 VFDKPNTIALSPDG----KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA---GNQPTGLDVSPD- 411 (433)
T ss_dssp CSSSEEEEEECTTS----SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC---SSSEEEEEECTT-
T ss_pred CCCCCCeEEEcCCC----CEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC---CCCCceEEEcCC-
Confidence 55678889998732 234443332 27999988765 66666643 456899999876
Q ss_pred CCCceEEEEecCCcEeC
Q psy8253 72 ESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 72 ~~~~plLa~aG~~G~Ir 88 (88)
++-|+++++.+|.|+
T Consensus 412 --g~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 412 --NRYLVISDFLDHQIR 426 (433)
T ss_dssp --SCEEEEEETTTTEEE
T ss_pred --CCEEEEEECCCCeEE
Confidence 445444444588874
No 128
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.50 E-value=0.11 Score=34.83 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=42.3
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
+....++++|+|- ...+++. .+.|.+++.... ++++.+.. .....+++|+.| ++. |++++.+|.
T Consensus 239 ~~~~~~~~~~s~d-----g~~l~~~-~~~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d---g~~-l~~~~~~~~ 302 (337)
T 1pby_B 239 MDVFYFSTAVNPA-----KTRAFGA-YNVLESFDLEKN---ASIKRVPL---PHSYYSVNVSTD---GST-VWLGGALGD 302 (337)
T ss_dssp CSSCEEEEEECTT-----SSEEEEE-ESEEEEEETTTT---EEEEEEEC---SSCCCEEEECTT---SCE-EEEESBSSE
T ss_pred CCCceeeEEECCC-----CCEEEEe-CCeEEEEECCCC---cCcceecC---CCceeeEEECCC---CCE-EEEEcCCCc
Confidence 3345678888872 2233333 789999998664 66666643 456788999876 344 555677776
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
|
T Consensus 303 i 303 (337)
T 1pby_B 303 L 303 (337)
T ss_dssp E
T ss_pred E
Confidence 6
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.39 E-value=0.15 Score=36.82 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=44.5
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCCC----eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN----RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~----~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
..|..++.+++|+|- .+.+|+++.+ .|.++++... ... +.. .......+++|+.| |+-|+.+
T Consensus 175 ~~~~~~v~~~~~Spd-----g~~la~~s~~~~~~~i~~~d~~tg-~~~--~l~---~~~~~~~~~~~spd---g~~la~~ 240 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPD-----GSKLAYVTFESGRSALVIQTLANG-AVR--QVA---SFPRHNGAPAFSPD---GSKLAFA 240 (415)
T ss_dssp EEESSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETTTC-CEE--EEE---CCSSCEEEEEECTT---SSEEEEE
T ss_pred eCCCCcceeeEEcCC-----CCEEEEEEecCCCcEEEEEECCCC-cEE--Eee---cCCCcccCEEEcCC---CCEEEEE
Confidence 457778999999983 4557777654 7999998765 222 222 23557899999987 4554446
Q ss_pred ecCCc
Q psy8253 81 AGSRA 85 (88)
Q Consensus 81 aG~~G 85 (88)
++.+|
T Consensus 241 ~~~~g 245 (415)
T 2hqs_A 241 LSKTG 245 (415)
T ss_dssp ECTTS
T ss_pred EecCC
Confidence 65544
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.31 E-value=0.18 Score=33.81 Aligned_cols=71 Identities=7% Similarity=0.095 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEE--EEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQ--CYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~--~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
..+.+++|+|- ...++++. +.++|.+|++..++.+..+. .... ........++|+.+ ++-+++++..++
T Consensus 129 ~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pd---g~~l~~~~~~~~ 200 (343)
T 1ri6_A 129 DGCHSANISPD----NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHPN---EQYAYCVNELNS 200 (343)
T ss_dssp TTBCCCEECTT----SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECTT---SSEEEEEETTTT
T ss_pred CCceEEEECCC----CCEEEEecCCCCEEEEEEecCCCceeeeccccccc-CCCCCcceEEECCC---CCEEEEEeCCCC
Confidence 34666777662 23455555 67899999998766555444 3332 23456778999876 445556665676
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.|
T Consensus 201 ~i 202 (343)
T 1ri6_A 201 SV 202 (343)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.25 E-value=0.3 Score=33.44 Aligned_cols=73 Identities=10% Similarity=0.139 Sum_probs=47.4
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCC-------CCceeEEEEeecCCCCceEE
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDI-------EENFYTCAWSMDLESGRPLL 78 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~-------~e~~y~~aWs~d~~~~~plL 78 (88)
+.....+++|+|-. ..++.+. +++.|.||++..++.++.+........ ......++|+.| ++ ++
T Consensus 84 ~~~~p~~~a~spdg----~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd---g~-l~ 155 (347)
T 3hfq_A 84 PGTPPAYVAVDEAR----QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD---NR-LA 155 (347)
T ss_dssp ESCCCSEEEEETTT----TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT---SC-EE
T ss_pred CCCCCEEEEECCCC----CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC---Cc-EE
Confidence 44556677777622 3344444 457899999988877777776644221 234778999877 44 67
Q ss_pred EEecCCcEe
Q psy8253 79 AVAGSRAVI 87 (88)
Q Consensus 79 a~aG~~G~I 87 (88)
+++..++.|
T Consensus 156 v~~~~~~~v 164 (347)
T 3hfq_A 156 VIDLGSDKV 164 (347)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCEE
Confidence 777666655
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.18 E-value=0.17 Score=33.86 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=44.9
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
+..++.+++|+|-. ..++++..+ +.|.+|++..+ +.++.+..+.. ......++|+.+ ++-+++++..+
T Consensus 36 ~~~~~~~~~~spdg----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~d---g~~l~~~~~~~ 105 (343)
T 1ri6_A 36 VPGQVQPMVVSPDK----RYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQ---GQFVFVGSYNA 105 (343)
T ss_dssp CSSCCCCEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTT---SSEEEEEETTT
T ss_pred cCCCCceEEECCCC----CEEEEeecCCCeEEEEEecCCCCceeecccccc---CCCCcEEEEcCC---CCEEEEEecCC
Confidence 44566677777622 334444444 78999999853 45677777743 237788999876 44545555557
Q ss_pred cEe
Q psy8253 85 AVI 87 (88)
Q Consensus 85 G~I 87 (88)
|.|
T Consensus 106 ~~i 108 (343)
T 1ri6_A 106 GNV 108 (343)
T ss_dssp TEE
T ss_pred CeE
Confidence 755
No 133
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=95.10 E-value=0.52 Score=32.97 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=38.7
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
++....+++|+|-. ..++++- |.++|.+|++..++.++.+..+.-+.+......++|+.|
T Consensus 143 ~~~~~~~~~~spdG----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd 203 (365)
T 1jof_A 143 ENTGIHGMVFDPTE----TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp TTCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred CCCcceEEEECCCC----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC
Confidence 45577888888732 2344333 568999999985445655555532223556788999877
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.94 E-value=0.54 Score=32.10 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
..+.+++|+|-. . +|++. ++++|.+|++..++.+..+..+.. ........++|+.| |+-+++++..++.|
T Consensus 141 ~~~~~~~~spdg----~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~g~~p~~~~~spd---g~~l~v~~~~~~~v 211 (347)
T 3hfq_A 141 SHIHYTDLTPDN----R-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM-EAGFGPRHLVFSPD---GQYAFLAGELSSQI 211 (347)
T ss_dssp CCEEEEEECTTS----C-EEEEETTTTEEEEEEECTTSCEEEEEEEEC-CTTCCEEEEEECTT---SSEEEEEETTTTEE
T ss_pred CCceEEEECCCC----c-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc-CCCCCCceEEECCC---CCEEEEEeCCCCEE
Confidence 357788888732 3 66665 456899999997666666655543 23445677899876 45555555555554
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.84 E-value=0.074 Score=34.56 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=43.7
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC-CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD-GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG 82 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~-~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG 82 (88)
.|...+.+++|+| +.+.+|+.+.+.|.+++... .... +.. .......+.+++|+.| ++ +|++++
T Consensus 39 ~~~~~v~~~~~sp-----dg~~l~~~~~~~i~~~d~~~~~~~~---~~~-~~~~~~~~~~~~~spd---g~-~l~~~~ 103 (297)
T 2ojh_A 39 QTPELFEAPNWSP-----DGKYLLLNSEGLLYRLSLAGDPSPE---KVD-TGFATICNNDHGISPD---GA-LYAISD 103 (297)
T ss_dssp EESSCCEEEEECT-----TSSEEEEEETTEEEEEESSSCCSCE---ECC-CTTCCCBCSCCEECTT---SS-EEEEEE
T ss_pred cCCcceEeeEECC-----CCCEEEEEcCCeEEEEeCCCCCCce---Eec-cccccccccceEECCC---CC-EEEEEE
Confidence 4677899999988 34578888888999999877 4322 222 1123467888999987 33 455555
No 136
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.32 E-value=0.73 Score=31.68 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCC--CeEEEEEcCC-CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGS--NRVSIYECPD-GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~--~~v~Vy~~~~-~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
....+++|+|-. ..++++..+ +.|.||++.+ ++.++.+..+.- ......++|+.| ++-|+++...++
T Consensus 259 ~~~~~i~~spdg----~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spd---g~~l~~~~~~~~ 328 (361)
T 3scy_A 259 QGSGDIHLSPDG----KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPN---GKYLLVACRDTN 328 (361)
T ss_dssp CCEEEEEECTTS----SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTT---SCEEEEEETTTT
T ss_pred CCcccEEECCCC----CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCC---CCEEEEEECCCC
Confidence 345688887732 345555544 7899999984 456777776643 455678999877 445444443555
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.|
T Consensus 329 ~v 330 (361)
T 3scy_A 329 VI 330 (361)
T ss_dssp EE
T ss_pred CE
Confidence 54
No 137
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=94.25 E-value=0.24 Score=36.88 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=42.6
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC-CCCCceeEEEEeecCC--------CCce
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP-DIEENFYTCAWSMDLE--------SGRP 76 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~-d~~e~~y~~aWs~d~~--------~~~p 76 (88)
|...+..++|+|-. +....+|+.+.+ .|.|+++... +.++.+... ..-..+++++++.+.. .+..
T Consensus 177 ~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 177 MPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp CCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred CCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 44455566666533 356788888876 5999999887 555655421 2234677778887621 0112
Q ss_pred EEEEecCCcEeC
Q psy8253 77 LLAVAGSRAVIR 88 (88)
Q Consensus 77 lLa~aG~~G~Ir 88 (88)
.|++|+.++.||
T Consensus 252 ~laSGs~D~tIk 263 (356)
T 2w18_A 252 SESLRSPVFQLI 263 (356)
T ss_dssp ------CCEEEE
T ss_pred eeeccCCCcEEE
Confidence 357777888775
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.98 E-value=0.33 Score=32.59 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
...++++|+|-. .+.+++. .++|.+|++... ++++.+. .....+.++|+.| ++. |++++.+|.|
T Consensus 255 ~~~~~~~~sp~d----g~~l~~~-~~~v~~~d~~~~---~~~~~~~---~~~~~~~~~~s~d---g~~-l~~~~~~~~v 318 (349)
T 1jmx_B 255 ELYFTGLRSPKD----PNQIYGV-LNRLAKYDLKQR---KLIKAAN---LDHTYYCVAFDKK---GDK-LYLGGTFNDL 318 (349)
T ss_dssp SCEEEEEECSSC----TTEEEEE-ESEEEEEETTTT---EEEEEEE---CSSCCCEEEECSS---SSC-EEEESBSSEE
T ss_pred CcceeeEecCCC----CCEEEEE-cCeEEEEECccC---eEEEEEc---CCCCccceEECCC---CCE-EEEecCCCeE
Confidence 356677777621 2234444 789999998765 6666664 2345778999987 445 4456767766
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.20 E-value=1.2 Score=29.79 Aligned_cols=71 Identities=10% Similarity=-0.033 Sum_probs=44.2
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeC-CCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVG-SNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG-~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
....+++|+|-. ..++++.. .+. +.+|++..++.+.-.. ...-........++|+.| ++-+++++..++.
T Consensus 128 ~~~~~~~~spdg----~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spd---g~~l~v~~~~~~~ 199 (331)
T 3u4y_A 128 YDAVGIAISPNG----NGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPD---GNFAFVANLIGNS 199 (331)
T ss_dssp TTEEEEEECTTS----SCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTT---SSEEEEEETTTTE
T ss_pred CCccceEECCCC----CEEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCC---CCEEEEEeCCCCe
Confidence 345788888732 34666544 467 9999999876533222 111134556788999877 4555666666666
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
|
T Consensus 200 v 200 (331)
T 3u4y_A 200 I 200 (331)
T ss_dssp E
T ss_pred E
Confidence 5
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.04 E-value=0.59 Score=31.43 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=40.6
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC----eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN----RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~----~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+..+..+++|+|- ...++ +.... .|.+++.... ++++.+.. ......++|+.| ++.++++.
T Consensus 81 ~~~~~~~~~~~s~d----g~~l~-~~~~~~~~~~i~v~d~~~~---~~~~~~~~---~~~~~~~~~spd---g~~l~~~~ 146 (331)
T 3u4y_A 81 EGQSSMADVDITPD----DQFAV-TVTGLNHPFNMQSYSFLKN---KFISTIPI---PYDAVGIAISPN---GNGLILID 146 (331)
T ss_dssp ECSSCCCCEEECTT----SSEEE-ECCCSSSSCEEEEEETTTT---EEEEEEEC---CTTEEEEEECTT---SSCEEEEE
T ss_pred cCCCCccceEECCC----CCEEE-EecCCCCcccEEEEECCCC---CeEEEEEC---CCCccceEECCC---CCEEEEEe
Confidence 34456666888762 23445 44444 7999998765 56666643 445689999987 44555555
Q ss_pred cCCc
Q psy8253 82 GSRA 85 (88)
Q Consensus 82 G~~G 85 (88)
..++
T Consensus 147 ~~~~ 150 (331)
T 3u4y_A 147 RSSA 150 (331)
T ss_dssp ETTT
T ss_pred cCCC
Confidence 4433
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.24 E-value=0.37 Score=31.12 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=38.4
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCC------------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGS------------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLES 73 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~------------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~ 73 (88)
.|...+..++|+|- ...+|+.+. .++.++++... .+..+.... .+...+..++|+.|
T Consensus 214 ~~~~~~~~~~~s~d-----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~--~~~~~~~~~~~spd--- 282 (297)
T 2ojh_A 214 DSAYGDWFPHPSPS-----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLF--GGQGTMNSPNWSPD--- 282 (297)
T ss_dssp CCSEEEEEEEECTT-----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEE--ESTTTSCSCCBCTT---
T ss_pred cCCcccCCeEECCC-----CCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccC--CCCcccccceECCC---
Confidence 44556777888762 344555544 35777777654 333333332 34567888999976
Q ss_pred CceEEEEecC
Q psy8253 74 GRPLLAVAGS 83 (88)
Q Consensus 74 ~~plLa~aG~ 83 (88)
++-|+.++..
T Consensus 283 g~~l~~~~~~ 292 (297)
T 2ojh_A 283 GDEFAYVRYF 292 (297)
T ss_dssp SSEEEEEEEC
T ss_pred CCEEEEEEec
Confidence 4554444433
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.01 E-value=2.7 Score=28.78 Aligned_cols=70 Identities=7% Similarity=0.078 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCC------eeEE---EEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGS------IKLL---QCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~------~~~l---~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
...+++|+|-. ..++++. |.++|.||++..++. +... ..... ........++|+.| ++-+++
T Consensus 156 ~~~~~~~spdg----~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spd---g~~l~v 227 (361)
T 3scy_A 156 HLHCVRITPDG----KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSD---GKFAYL 227 (361)
T ss_dssp CEEEEEECTTS----SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTT---SSEEEE
T ss_pred cceEEEECCCC----CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCC---CCEEEE
Confidence 45788998732 3354444 567899999987653 4333 22222 34556778999887 444444
Q ss_pred EecCCcEe
Q psy8253 80 VAGSRAVI 87 (88)
Q Consensus 80 ~aG~~G~I 87 (88)
+...++.|
T Consensus 228 ~~~~~~~v 235 (361)
T 3scy_A 228 INEIGGTV 235 (361)
T ss_dssp EETTTCEE
T ss_pred EcCCCCeE
Confidence 44355554
No 143
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=90.91 E-value=0.7 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCeEEEEEcCCCCC-eeEEEEEEc
Q psy8253 24 QPRIFATVGSNRVSIYECPDGGS-IKLLQCYAD 55 (88)
Q Consensus 24 ~~~~fAtvG~~~v~Vy~~~~~~~-~~~l~~~~d 55 (88)
....||++-++.|.||+..++.+ +++++.+-+
T Consensus 28 e~nhFgv~e~g~iKIykyde~tNeI~LkKE~~~ 60 (72)
T 3kvp_A 28 EHNHFGVMEDGYIKIYEYNESRNEVKLKKEYAD 60 (72)
T ss_dssp STTEEEEEETTEEEEEEEETTTTEEEEEEEEEC
T ss_pred cCCEEEEEeCCEEEEEEeCCCCCeEEEEEeecC
Confidence 46789999999999999999876 889988765
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=90.73 E-value=2.2 Score=30.63 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=37.8
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEE-EeC---CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFA-TVG---SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV 80 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fA-tvG---~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~ 80 (88)
..|...+.+++|+|- .+.+| +.+ ..+|.++++... .+ +.. ........+++|+.| ++- |++
T Consensus 219 ~~~~~~~~~~~~spd-----g~~la~~~~~~g~~~i~~~d~~~~-~~---~~l--~~~~~~~~~~~~spd---g~~-l~~ 283 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPD-----GSKLAFALSKTGSLNLYVMDLASG-QI---RQV--TDGRSNNTEPTWFPD---SQN-LAF 283 (415)
T ss_dssp ECCSSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETTTC-CE---EEC--CCCSSCEEEEEECTT---SSE-EEE
T ss_pred ecCCCcccCEEEcCC-----CCEEEEEEecCCCceEEEEECCCC-CE---EeC--cCCCCcccceEECCC---CCE-EEE
Confidence 346668899999883 33344 432 235777777654 22 222 134567889999987 445 444
Q ss_pred ecC
Q psy8253 81 AGS 83 (88)
Q Consensus 81 aG~ 83 (88)
++.
T Consensus 284 ~s~ 286 (415)
T 2hqs_A 284 TSD 286 (415)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.63 E-value=2.7 Score=28.16 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCC--CCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPD--IEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d--~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
++....+++|+|- ...++++..++.+.+++.... ++++.+...+ +......++|+.+ ++-++++...+
T Consensus 183 ~~~~~~~~~~s~d----g~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~ 252 (353)
T 3vgz_A 183 TGKMSTGLALDSE----GKRLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTA---RQRAFITDSKA 252 (353)
T ss_dssp CCTTCCCCEEETT----TTEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETT---TTEEEEEESSS
T ss_pred CCCccceEEECCC----CCEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCC---CCEEEEEeCCC
Confidence 3444667777762 345677777778999987765 5666554322 3445678999987 44545554444
Q ss_pred cEe
Q psy8253 85 AVI 87 (88)
Q Consensus 85 G~I 87 (88)
+.|
T Consensus 253 ~~v 255 (353)
T 3vgz_A 253 AEV 255 (353)
T ss_dssp SEE
T ss_pred CEE
Confidence 554
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=89.34 E-value=3.5 Score=27.57 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
...+.+++|+|-. ..+|++..+ +.|.+++.... ++++.+.-... ..++|+.| ++.++++...+|.
T Consensus 230 ~~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~----~~~~~s~d---g~~l~v~~~~~~~ 295 (353)
T 3vgz_A 230 EHFFINISLDTAR----QRAFITDSKAAEVLVVDTRNG---NILAKVAAPES----LAVLFNPA---RNEAYVTHRQAGK 295 (353)
T ss_dssp CCCEEEEEEETTT----TEEEEEESSSSEEEEEETTTC---CEEEEEECSSC----CCEEEETT---TTEEEEEETTTTE
T ss_pred CcccceEEECCCC----CEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCC----ceEEECCC---CCEEEEEECCCCe
Confidence 4456778888732 345555544 78999998765 45555543221 56888876 4555666666666
Q ss_pred e
Q psy8253 87 I 87 (88)
Q Consensus 87 I 87 (88)
|
T Consensus 296 v 296 (353)
T 3vgz_A 296 V 296 (353)
T ss_dssp E
T ss_pred E
Confidence 5
No 147
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=89.21 E-value=1.7 Score=32.22 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=40.2
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
.|..+++++++.+- . ||++. .+.+.|+++...... + ..+.+-+++||.+. +++|..+
T Consensus 124 ~~~~~v~~i~~~~p------~-~av~~~dG~L~v~dl~~~~~~---~------~~~~Vs~v~WSpkG------~~vg~~d 181 (388)
T 1xip_A 124 SFEKPVFQLKNVNN------T-LVILNSVNDLSALDLRTKSTK---Q------LAQNVTSFDVTNSQ------LAVLLKD 181 (388)
T ss_dssp ECSSCEEEEEECSS------E-EEEEETTSEEEEEETTTCCEE---E------EEESEEEEEECSSE------EEEEETT
T ss_pred eeecceeeEEecCC------C-EEEEECCCCEEEEEccCCccc---c------ccCCceEEEEcCCc------eEEEEcC
Confidence 45567777765421 2 66664 457999999865322 2 23468899999882 6778888
Q ss_pred cEeC
Q psy8253 85 AVIR 88 (88)
Q Consensus 85 G~Ir 88 (88)
|.|+
T Consensus 182 g~i~ 185 (388)
T 1xip_A 182 RSFQ 185 (388)
T ss_dssp SCEE
T ss_pred CcEE
Confidence 8764
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=88.28 E-value=1.4 Score=33.18 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 34 NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 34 ~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
.+|.++++... +..+......++..+..++|+.|
T Consensus 235 ~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~~spd 268 (706)
T 2z3z_A 235 VTVGIYHLATG---KTVYLQTGEPKEKFLTNLSWSPD 268 (706)
T ss_dssp EEEEEEETTTT---EEEECCCCSCTTCEEEEEEECTT
T ss_pred eEEEEEECCCC---ceEeeccCCCCceeEeeEEEECC
Confidence 35667766543 22222222234566789999987
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=88.22 E-value=2.5 Score=28.15 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 24 QPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
...+|++.+ .+.|.+++.... ++++.+.-+. ......++|+.| ++-++++++.++.|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~~~s~d---g~~~~v~~~~~~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPD-KFGPGTAMMAPD---NRTAYVLNNHYGDI 67 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTT---EEEEEEECSS-CCSSCEEEECTT---SSEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCeEEEEECCCC---cEEEEEecCC-CCCCceeEECCC---CCEEEEEeCCCCcE
Confidence 456677765 457999998765 6677664321 114678899876 45556666666665
No 150
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=87.69 E-value=2.4 Score=31.65 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCC---------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEE
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGS---------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLL 78 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~---------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plL 78 (88)
...+.+++|+|- .+.+|.++. ..|.++++..++.+..++.... ......+.++|+.| |+ ++
T Consensus 187 ~~~~~~~~~SpD-----G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spd---g~-l~ 256 (662)
T 3azo_A 187 HRFVTGPRLSPD-----GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPD---GS-LI 256 (662)
T ss_dssp SSEECCCEECTT-----SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTT---SC-EE
T ss_pred CCcccCceECCC-----CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCC---Ce-EE
Confidence 345566677662 344554442 3688888774443322222222 23577899999987 45 77
Q ss_pred EEecCCc
Q psy8253 79 AVAGSRA 85 (88)
Q Consensus 79 a~aG~~G 85 (88)
+++..+|
T Consensus 257 ~~~~~~~ 263 (662)
T 3azo_A 257 VATDRTG 263 (662)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 8777766
No 151
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=87.22 E-value=7.3 Score=29.31 Aligned_cols=74 Identities=9% Similarity=-0.033 Sum_probs=44.5
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEe--CCCeEEEEEcCCCCCeeEEEEEEcC----C-----CCCceeEEEEeecCCCCc
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATV--GSNRVSIYECPDGGSIKLLQCYADP----D-----IEENFYTCAWSMDLESGR 75 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtv--G~~~v~Vy~~~~~~~~~~l~~~~d~----d-----~~e~~y~~aWs~d~~~~~ 75 (88)
++....+++|+||-.. +.+.+++. ..+.|.|++.... ++++.+.-. + ++.....++++.+ +.
T Consensus 220 ~g~~p~~va~sp~~~~-dg~~l~v~~~~~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~---~~ 292 (543)
T 1nir_A 220 IGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE---HP 292 (543)
T ss_dssp CCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSS---SS
T ss_pred cCCCcceEEeCCCcCC-CCCEEEEEEccCCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCC---CC
Confidence 4556789999997542 23334433 3678999987664 455544321 1 1225777888765 34
Q ss_pred eEEEEecCCcEe
Q psy8253 76 PLLAVAGSRAVI 87 (88)
Q Consensus 76 plLa~aG~~G~I 87 (88)
.++++...+|.|
T Consensus 293 ~~~vs~~~~g~i 304 (543)
T 1nir_A 293 EFIVNVKETGKV 304 (543)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCeE
Confidence 556666666665
No 152
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=86.31 E-value=2 Score=32.44 Aligned_cols=34 Identities=6% Similarity=0.074 Sum_probs=26.3
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
.|...+..++|+| +.+.+|++..+.|.++++...
T Consensus 149 ~~~~~~~~~~~SP-----DG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 149 HGEGFATDAKLSP-----KGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp CSSSCEEEEEECT-----TSSEEEEEETTEEEEEETTTT
T ss_pred cCCcccccccCCC-----CCCEEEEEeCCcEEEEecCCC
Confidence 4566789999998 245688888888999988764
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=84.69 E-value=1.4 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=38.9
Q ss_pred cccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.+.+..++|+++|+|- .+.+|+++ ++.+.||.+. .+ +..+.- . .+.....+++||.| .+|+++
T Consensus 17 ~~~~~~~~~~~~~~~D-----G~~la~~s~~~g~~~lw~~~-~g--~~~~lt-~-~~~~~~~~~~~spd-----~~l~~~ 81 (582)
T 3o4h_A 17 ERLIAVEKYSLQGVVD-----GDKLLVVGFSEGSVNAYLYD-GG--ETVKLN-R-EPINSVLDPHYGVG-----RVILVR 81 (582)
T ss_dssp HHHHHSCEEEEEEEET-----TTEEEEEEEETTEEEEEEEE-TT--EEEECC-S-SCCSEECEECTTCS-----EEEEEE
T ss_pred HHHhccchheeecCCC-----CCeEEEEEccCCceeEEEEc-CC--CcEeee-c-ccccccccccCCCC-----eEEEEe
Confidence 3455779999999983 34566655 5678899973 32 222221 1 22346888999854 345544
Q ss_pred c
Q psy8253 82 G 82 (88)
Q Consensus 82 G 82 (88)
.
T Consensus 82 ~ 82 (582)
T 3o4h_A 82 D 82 (582)
T ss_dssp E
T ss_pred c
Confidence 4
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=84.29 E-value=4.4 Score=26.71 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=34.3
Q ss_pred EEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 27 IFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 27 ~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++++. +.+.|.+++.... ++++.+..+...-....++|+.| ++.++++++.++.|
T Consensus 3 ~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~~~~~v 58 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESL 58 (337)
T ss_dssp EEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEE
T ss_pred EEEEcCCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCC---CCEEEEEeCCCCeE
Confidence 34444 4568999998765 67777753221103667889876 45556666666665
No 155
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=83.25 E-value=6.9 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCEEEEeC----------CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec-CCcEe
Q psy8253 24 QPRIFATVG----------SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG-SRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG----------~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG-~~G~I 87 (88)
...+|.+.. ++.|.|++.... ++++.+. ....-+.++|+.| |+++|.++. .++.|
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~---~g~~p~~i~~s~D---g~~~l~v~~~~~~~V 343 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS---LGHDVDAISVAQD---GGPDLYALSAGTEVL 343 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE---CCCCcCeEEECCC---CCeEEEEEcCCCCeE
Confidence 355666653 457888888765 7777773 3446788999887 565566654 45554
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=83.01 E-value=4.6 Score=32.43 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=40.8
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
.|...+..++|+|- .+.+|+.+.+ .|.++++... ++.+... .+...++.++||.| |+- |++++.
T Consensus 376 ~~~~~~~~~~~SpD-----G~~la~~~~~~~v~~~d~~tg---~~~~~~~--~~~~~v~~~~~SpD---G~~-la~~~~ 440 (1045)
T 1k32_A 376 ENLGNVFAMGVDRN-----GKFAVVANDRFEIMTVDLETG---KPTVIER--SREAMITDFTISDN---SRF-IAYGFP 440 (1045)
T ss_dssp CCCCSEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CSSSCCCCEEECTT---SCE-EEEEEE
T ss_pred CCccceeeeEECCC-----CCEEEEECCCCeEEEEECCCC---ceEEecc--CCCCCccceEECCC---CCe-EEEEec
Confidence 45678889999873 3456665554 7899988765 2233222 25566789999987 444 555443
No 157
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=82.49 E-value=4 Score=30.83 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=21.9
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCC--C-----eEEEEEcCCC
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGS--N-----RVSIYECPDG 44 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~--~-----~v~Vy~~~~~ 44 (88)
..++.+++|+|- .+.+|+++. + .|.+++....
T Consensus 36 ~~~~~~~~~Spd-----G~~la~~~~~d~~~~~~~i~~~d~~~g 74 (741)
T 2ecf_A 36 GPTLMKPKVAPD-----GSRVTFLRGKDSDRNQLDLWSYDIGSG 74 (741)
T ss_dssp CCCCEEEEECTT-----SSEEEEEECCSSCTTEEEEEEEETTTC
T ss_pred CCCCCCceEecC-----CCEEEEEeccCCCCcccEEEEEECCCC
Confidence 457889999883 455676664 3 5777777654
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=81.65 E-value=6.3 Score=29.61 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=37.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCC------eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee--cCCCCceE
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN------RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM--DLESGRPL 77 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~------~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~--d~~~~~pl 77 (88)
.|...+..++|+|- .+.+|+.+.+ .|.+++......++.+..-.+....+....++|+. | |+ +
T Consensus 255 ~~~~~~~~~~~spd-----g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d---g~-~ 325 (706)
T 2z3z_A 255 PKEKFLTNLSWSPD-----ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN---NQ-F 325 (706)
T ss_dssp CTTCEEEEEEECTT-----SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS---SE-E
T ss_pred CCceeEeeEEEECC-----CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC---CE-E
Confidence 35566788999883 3344544332 45555554432333333322211112245688987 5 33 6
Q ss_pred EEEecCCcE
Q psy8253 78 LAVAGSRAV 86 (88)
Q Consensus 78 La~aG~~G~ 86 (88)
|+++..+|.
T Consensus 326 l~~~~~~g~ 334 (706)
T 2z3z_A 326 IWQSRRDGW 334 (706)
T ss_dssp EEEECTTSS
T ss_pred EEEEccCCc
Confidence 777776664
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=81.04 E-value=5.8 Score=31.85 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=38.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeCC-----C--eEEEEEcCCCCCeeEEEEEEcCCCCCce-------eEEEEeec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVGS-----N--RVSIYECPDGGSIKLLQCYADPDIEENF-------YTCAWSMD 70 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-----~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~-------y~~aWs~d 70 (88)
..|...+.+++|+|- .+.+|+++. + .|.+++.... + ++... .+.... ..++||.|
T Consensus 49 t~~~~~v~~~~~SPD-----G~~la~~s~~~~~~~~~~i~~~d~~~g---~-~~~lt--~~~~~~~~~~~~~~~~~~SpD 117 (1045)
T 1k32_A 49 VSNLGVINNARFFPD-----GRKIAIRVMRGSSLNTADLYFYNGENG---E-IKRIT--YFSGKSTGRRMFTDVAGFDPD 117 (1045)
T ss_dssp ECSSSEEEEEEECTT-----SSEEEEEEEESTTCCEEEEEEEETTTT---E-EEECC--CCCEEEETTEECSEEEEECTT
T ss_pred eeCCCcccCeEECCC-----CCEEEEEEeeccCCCCCeEEEEECCCC---C-eEEcc--cCCCcccccccccccccCCCC
Confidence 357778999999983 445666532 3 4555555432 2 22222 234445 89999987
Q ss_pred CCCCceEEEEecCC
Q psy8253 71 LESGRPLLAVAGSR 84 (88)
Q Consensus 71 ~~~~~plLa~aG~~ 84 (88)
|+ +|++++.+
T Consensus 118 ---g~-ll~~~~~~ 127 (1045)
T 1k32_A 118 ---GN-LIISTDAM 127 (1045)
T ss_dssp ---CC-EEEEECTT
T ss_pred ---CE-EEEEECCc
Confidence 34 67777643
No 160
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=80.31 E-value=14 Score=27.77 Aligned_cols=52 Identities=6% Similarity=-0.058 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM 69 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~ 69 (88)
.+++++|+|- ...++++-.++.|.+|++... ..++++.+. ....-..++++.
T Consensus 180 ~~~~v~~spd----g~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~---~g~~p~~va~sp 231 (543)
T 1nir_A 180 AVHISRMSAS----GRYLLVIGRDARIDMIDLWAK-EPTKVAEIK---IGIEARSVESSK 231 (543)
T ss_dssp TEEEEEECTT----SCEEEEEETTSEEEEEETTSS-SCEEEEEEE---CCSEEEEEEECC
T ss_pred ccceEEECCC----CCEEEEECCCCeEEEEECcCC-CCcEEEEEe---cCCCcceEEeCC
Confidence 4789999982 245565556678999999321 236666664 355677888886
No 161
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=79.05 E-value=3.5 Score=31.00 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=36.2
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCC----------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGS----------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA 79 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~----------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa 79 (88)
.+.+++|+|- .+.+|+.+. ..+.++++.... +..|. ........+..++||.| |+- ||
T Consensus 62 ~v~~~~~SpD-----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~--~~~~~~~~~~~~~~SPd---G~~-la 129 (723)
T 1xfd_A 62 RAIRYEISPD-----REYALFSYNVEPIYQHSYTGYYVLSKIPHGD-PQSLD--PPEVSNAKLQYAGWGPK---GQQ-LI 129 (723)
T ss_dssp TCSEEEECTT-----SSEEEEEESCCCCSSSCCCSEEEEEESSSCC-CEECC--CTTCCSCCCSBCCBCSS---TTC-EE
T ss_pred ccceEEECCC-----CCEEEEEecCccceeecceeeEEEEECCCCc-eEecc--CCccccccccccEECCC---CCE-EE
Confidence 4889999983 344555544 568888887653 22222 12233445788999988 344 45
Q ss_pred Eec
Q psy8253 80 VAG 82 (88)
Q Consensus 80 ~aG 82 (88)
.++
T Consensus 130 ~~~ 132 (723)
T 1xfd_A 130 FIF 132 (723)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=77.68 E-value=4 Score=30.11 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=40.3
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCC-eeEEEEEEcCCCCCceeEEE--------EeecCCCC
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGS-IKLLQCYADPDIEENFYTCA--------WSMDLESG 74 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~a--------Ws~d~~~~ 74 (88)
..|...+.+++|+|- .+.+|+.. .+...||....+++ .. . -.+.+..+..++ |+.| |
T Consensus 191 ~~~~~~~~~~~~SpD-----G~~l~~~~~~~~~~i~~~d~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~spd---g 257 (582)
T 3o4h_A 191 DSGEGSFSSASISPG-----MKVTAGLETAREARLVTVDPRDGSVE---D--LELPSKDFSSYRPTAITWLGYLPD---G 257 (582)
T ss_dssp CCSSCEEEEEEECTT-----SCEEEEEECSSCEEEEEECTTTCCEE---E--CCCSCSHHHHHCCSEEEEEEECTT---S
T ss_pred ecCCCccccceECCC-----CCEEEEccCCCeeEEEEEcCCCCcEE---E--ccCCCcChhhhhhccccceeEcCC---C
Confidence 456667788888872 23344433 33245555554432 22 1 223455566667 9977 4
Q ss_pred ceEEEEecCCcEeC
Q psy8253 75 RPLLAVAGSRAVIR 88 (88)
Q Consensus 75 ~plLa~aG~~G~Ir 88 (88)
.++++++.+|.++
T Consensus 258 -~~~~~~~~~g~~~ 270 (582)
T 3o4h_A 258 -RLAVVARREGRSA 270 (582)
T ss_dssp -CEEEEEEETTEEE
T ss_pred -cEEEEEEcCCcEE
Confidence 6788888888653
No 163
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=73.08 E-value=5 Score=30.12 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
+..++|+| +.+.+|+++.+.|.++.....
T Consensus 116 ~~~~~~SP-----dG~~la~~~~~~i~~~~~~~g 144 (723)
T 1xfd_A 116 LQYAGWGP-----KGQQLIFIFENNIYYCAHVGK 144 (723)
T ss_dssp CSBCCBCS-----STTCEEEEETTEEEEESSSSS
T ss_pred ccccEECC-----CCCEEEEEECCeEEEEECCCC
Confidence 56666766 345688888888888877654
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=72.05 E-value=21 Score=24.98 Aligned_cols=43 Identities=2% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 33 SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++.|.|++.... ++++.+.- .. -+.++|+.| |+ +|.+++. +.|
T Consensus 285 ~~~v~viD~~t~---~~v~~i~~---~~-p~~ia~spd---g~-~l~v~n~-~~v 327 (361)
T 2oiz_A 285 AAEIWVMDTKTK---QRVARIPG---RD-ALSMTIDQQ---RN-LMLTLDG-GNV 327 (361)
T ss_dssp CSEEEEEETTTT---EEEEEEEC---TT-CCEEEEETT---TT-EEEEECS-SCE
T ss_pred CceEEEEECCCC---cEEEEEec---CC-eeEEEECCC---CC-EEEEeCC-CeE
Confidence 357888887765 78887743 23 889999987 45 4556654 544
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=67.66 E-value=23 Score=23.10 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCeEEEEEecCCCCCCCCEEEEe-CCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATV-GSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
....+++|.|- ..++++. +++ +|.+|+ +++ +.++.+.........+.++|+.+ ++ |+++ ..++.
T Consensus 207 ~~p~~i~~d~~-----G~l~v~~~~~~~~i~~~~--~~g--~~~~~~~~~~~~~~~~~i~~~~~---g~-l~vs-~~~~~ 272 (286)
T 1q7f_A 207 NYPIGVGINSN-----GEILIADNHNNFNLTIFT--QDG--QLISALESKVKHAQCFDVALMDD---GS-VVLA-SKDYR 272 (286)
T ss_dssp CSEEEEEECTT-----CCEEEEECSSSCEEEEEC--TTS--CEEEEEEESSCCSCEEEEEEETT---TE-EEEE-ETTTE
T ss_pred CCCcEEEECCC-----CCEEEEeCCCCEEEEEEC--CCC--CEEEEEcccCCCCcceeEEECCC---Cc-EEEE-CCCCe
Confidence 35677777651 2455555 454 899997 333 34555544334445778998865 43 5655 45676
Q ss_pred eC
Q psy8253 87 IR 88 (88)
Q Consensus 87 Ir 88 (88)
|+
T Consensus 273 v~ 274 (286)
T 1q7f_A 273 LY 274 (286)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=64.41 E-value=11 Score=28.99 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253 8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR 84 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~ 84 (88)
....++++|.|- .+++++- .+.|.+|....+....++..-........+...+||.| |+- |+.+..+
T Consensus 16 ~~~~~~~~w~~d-----g~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd---g~~-l~~~~~~ 82 (740)
T 4a5s_A 16 RLKLYSLRWISD-----HEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD---GQF-ILLEYNY 82 (740)
T ss_dssp CCCCCCEEECSS-----SEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTT---SSE-EEEEEEE
T ss_pred cccccccEECCC-----CcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCC---CCE-EEEEECC
Confidence 345667777763 3567764 77899999887643222221111112234556889887 444 5555443
No 167
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=63.83 E-value=32 Score=26.15 Aligned_cols=55 Identities=25% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccCCCCeEEEEEecCCCCCCCCEEEEe----CCC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 5 EDHGQPLFGAQFNHLLKDDQPRIFATV----GSN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 5 e~h~~~~y~v~Fnp~~~~~~~~~fAtv----G~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
++|...+.+++|+|- .+.+|.. |++ .|.|+++... +.++.-. .+..+..++|+.|
T Consensus 121 ~~~~~~~~~~~~SPD-----g~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~~---~~~~~~~~~wspD 181 (710)
T 2xdw_A 121 DDGTVALRGYAFSED-----GEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVL---ERVKFSCMAWTHD 181 (710)
T ss_dssp TTSCEEEEEEEECTT-----SSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEE---EEECSCCEEECTT
T ss_pred cCCCEEEEEEEECCC-----CCEEEEEEcCCCCceEEEEEEECCCC---CCCcccc---cCcccceEEEEeC
Confidence 344446778888862 3344443 333 5677776554 3333211 1122677999987
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=62.09 E-value=34 Score=23.19 Aligned_cols=75 Identities=9% Similarity=0.094 Sum_probs=42.7
Q ss_pred cCCCCeEEEEEecCCC---CCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 6 DHGQPLFGAQFNHLLK---DDQPRIFATVGSNRVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~---~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
.++...++++|.| .. ......++-.++.+|.+++.... ++++.+.. ...-..-..++.+.+ | .|+++.
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~d---G-~lyvad 309 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASED---G-TVYIGD 309 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTT---S-EEEEEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCC---C-CEEEEE
Confidence 3556788999998 10 01111222223446888887765 56666531 223445677777654 4 567777
Q ss_pred cCCcEeC
Q psy8253 82 GSRAVIR 88 (88)
Q Consensus 82 G~~G~Ir 88 (88)
..++.|+
T Consensus 310 ~~~~~I~ 316 (329)
T 3fvz_A 310 AHTNTVW 316 (329)
T ss_dssp SSSCCEE
T ss_pred CCCCEEE
Confidence 7776663
No 169
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=61.80 E-value=45 Score=24.47 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=40.9
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
++.. ++.++| +...++++-++.|.||++..-.....++.+ +..+.++.|..- . +|++..+|
T Consensus 86 ~lp~-V~~l~f-------d~~~L~v~~~~~l~v~dv~sl~~~~~~~~~-----~~~v~~i~~~~p-----~-~av~~~dG 146 (388)
T 1xip_A 86 EIPD-VIFVCF-------HGDQVLVSTRNALYSLDLEELSEFRTVTSF-----EKPVFQLKNVNN-----T-LVILNSVN 146 (388)
T ss_dssp ECTT-EEEEEE-------ETTEEEEEESSEEEEEESSSTTCEEEEEEC-----SSCEEEEEECSS-----E-EEEEETTS
T ss_pred eCCC-eeEEEE-------CCCEEEEEcCCcEEEEEchhhhccCcccee-----ecceeeEEecCC-----C-EEEEECCC
Confidence 3455 999999 235555556678999999876544555555 334666665522 1 77777777
Q ss_pred Ee
Q psy8253 86 VI 87 (88)
Q Consensus 86 ~I 87 (88)
.|
T Consensus 147 ~L 148 (388)
T 1xip_A 147 DL 148 (388)
T ss_dssp EE
T ss_pred CE
Confidence 76
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=60.43 E-value=8.6 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
..+..++|+|- .+.+|.+..+.|.++++...
T Consensus 110 ~~~~~~~~SPD-----G~~la~~~~~~i~~~~~~~g 140 (719)
T 1z68_A 110 RPIQYLCWSPV-----GSKLAYVYQNNIYLKQRPGD 140 (719)
T ss_dssp SSBCCEEECSS-----TTCEEEEETTEEEEESSTTS
T ss_pred cccccceECCC-----CCEEEEEECCeEEEEeCCCC
Confidence 35778888884 34477778888999887665
No 171
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=55.91 E-value=10 Score=28.56 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=33.4
Q ss_pred EEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCC-CCCceeEEEEeecCCCCceEEEEecC
Q psy8253 13 GAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPD-IEENFYTCAWSMDLESGRPLLAVAGS 83 (88)
Q Consensus 13 ~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d-~~e~~y~~aWs~d~~~~~plLa~aG~ 83 (88)
+++|+|.. +++++.+.+.|.+++..... ..+...... ..-.+.+++||.| |+- ||.++.
T Consensus 20 ~~~~s~dg-----~~~~~~~d~~i~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~SpD---g~~-la~~~~ 79 (719)
T 1z68_A 20 FPNWISGQ-----EYLHQSADNNIVLYNIETGQ---SYTILSNRTMKSVNASNYGLSPD---RQF-VYLESD 79 (719)
T ss_dssp CCEESSSS-----EEEEECTTSCEEEEESSSCC---EEEEECHHHHHTTTCSEEEECTT---SSE-EEEEEE
T ss_pred ccEECCCC-----eEEEEcCCCCEEEEEcCCCc---EEEEEccccccccceeeEEECCC---CCe-EEEEec
Confidence 55666532 45666666678888887653 222221100 0123789999987 444 555543
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=47.68 E-value=30 Score=26.54 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=24.0
Q ss_pred cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253 6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG 44 (88)
Q Consensus 6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~ 44 (88)
.|...+..++|+|-- +.+|.+..+.|.|......
T Consensus 109 ~~~~~~~~~~~SPdG-----~~la~~~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 109 RIPNNTQWVTWSPVG-----HKLAYVWNNDIYVKIEPNL 142 (740)
T ss_dssp CCCTTEEEEEECSST-----TCEEEEETTEEEEESSTTS
T ss_pred cCCCcceeeEECCCC-----CEEEEEECCeEEEEECCCC
Confidence 345678899998843 3467788888888776654
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=47.66 E-value=58 Score=21.53 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCCCCCEEEEeCC----CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 11 LFGAQFNHLLKDDQPRIFATVGS----NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAtvG~----~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
+..++|+|- .+.+|.+.. +...||....+++ +..+.... +. +..++|+.|
T Consensus 61 ~~~~~~SpD-----g~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~---~~-~~~~~wspd 114 (347)
T 2gop_A 61 ATMPRISPD-----GKKIAFMRANEEKKVSEIWVADLETL-SSKKILEA---KN-IRSLEWNED 114 (347)
T ss_dssp CEEEEECTT-----SSEEEEEEEETTTTEEEEEEEETTTT-EEEEEEEE---SE-EEEEEECTT
T ss_pred CCCeEECCC-----CCEEEEEEeccCCCcceEEEEECCCC-ceEEEEcC---CC-ccceeECCC
Confidence 445666652 344554432 3444444443322 33333322 22 889999987
No 174
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=46.02 E-value=68 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCe-eEEEEEEcCCCCCceeEEEEeec
Q psy8253 33 SNRVSIYECPDGGSI-KLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 33 ~~~v~Vy~~~~~~~~-~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
++.+.+|++..++.+ ..++.+.. +.......++|+.|
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spd 155 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPT 155 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTT
T ss_pred CceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCC
Confidence 557999999876643 33444421 24456788999877
No 175
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=45.83 E-value=28 Score=25.91 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCCEEEEeC----------CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec-CCcEe
Q psy8253 24 QPRIFATVG----------SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG-SRAVI 87 (88)
Q Consensus 24 ~~~~fAtvG----------~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG-~~G~I 87 (88)
...+|.+.. ++.|.|++.... ++++.+.- ...-+.++|+.| ++++|.++. .++.|
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~v---g~~P~gia~spD---g~~~lyv~n~~s~~V 395 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIEL---GHEIDSINVSQD---AEPLLYALSAGTQTL 395 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE---EEEECEEEECCS---SSCEEEEEETTTTEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEEC---CCCcCeEEEccC---CCEEEEEEcCCCCeE
Confidence 356777763 457999998876 56655522 223455566554 454444443 34443
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=43.87 E-value=63 Score=20.85 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
....+++|.| ...++++. ++++|.+|+. ++ +.++.+...........++++.+ ++ ++++...++.|
T Consensus 121 ~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~--~g--~~~~~~~~~~~~~~p~~i~~~~~---g~-l~v~~~~~~~i 187 (286)
T 1q7f_A 121 QHPRGVTVDN-----KGRIIVVECKVMRVIIFDQ--NG--NVLHKFGCSKHLEFPNGVVVNDK---QE-IFISDNRAHCV 187 (286)
T ss_dssp SCEEEEEECT-----TSCEEEEETTTTEEEEECT--TS--CEEEEEECTTTCSSEEEEEECSS---SE-EEEEEGGGTEE
T ss_pred CCceEEEEeC-----CCCEEEEECCCCEEEEEcC--CC--CEEEEeCCCCccCCcEEEEECCC---CC-EEEEECCCCEE
Confidence 3567777766 12455554 5567888873 33 34444433223344566776654 23 45554444433
No 177
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=42.53 E-value=80 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=17.3
Q ss_pred CCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 59 EENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 59 ~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
...+|.++|.- +.. +.++|.+|.|
T Consensus 292 ~~~~~~v~~~~----~~~-~~~~G~~G~i 315 (327)
T 2xbg_A 292 PSNFYKILFFS----PDQ-GFILGQKGIL 315 (327)
T ss_dssp SSCCCEEEEEE----TTE-EEEECSTTEE
T ss_pred CCCeEEEEEEC----CCc-eEEEcCCceE
Confidence 57899999972 234 6677788876
No 178
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=41.93 E-value=90 Score=22.90 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=34.7
Q ss_pred CCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 9 QPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 9 ~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
.+.++++|+|-. ...+|++.+ ++.|.|++.... ++++++.-. ..-....++.|
T Consensus 331 ~~~~~lavs~D~---~~~ly~tn~~~~~VsViD~~t~---k~~~~i~~~---~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQDE---KPLLYALSTGDKTLYIHDAESG---EELRSVNQL---GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECSSS---SCEEEEEETTTTEEEEEETTTC---CEEEEECCC---CSSCCEEEECC
T ss_pred CCcceEEECCCC---CeEEEEEcCCCCeEEEEECCCC---cEEEEecCC---CCCceeEECCc
Confidence 367788887733 346788776 568999998875 788888433 32333455544
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=40.20 E-value=75 Score=20.69 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=30.4
Q ss_pred CEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253 26 RIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR 88 (88)
Q Consensus 26 ~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir 88 (88)
.+.++. +++|.+|... + ++++.+..+. . ..+++++-+ +++- |.+++.+|+.|
T Consensus 230 ~l~v~~-~~~v~~~~~~--g--~~~~~~~~~~--~-~~~~~f~~~--d~~~-L~v~t~~~l~~ 281 (296)
T 3e5z_A 230 LIWASA-GDGVHVLTPD--G--DELGRVLTPQ--T-TSNLCFGGP--EGRT-LYMTVSTEFWS 281 (296)
T ss_dssp CEEEEE-TTEEEEECTT--S--CEEEEEECSS--C-CCEEEEEST--TSCE-EEEEETTEEEE
T ss_pred CEEEEc-CCeEEEECCC--C--CEEEEEECCC--C-ceeEEEECC--CCCE-EEEEcCCeEEE
Confidence 455555 6777777653 3 4566665432 2 788888722 3444 66666667653
No 180
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=36.35 E-value=92 Score=20.58 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=24.4
Q ss_pred CEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEe
Q psy8253 26 RIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWS 68 (88)
Q Consensus 26 ~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs 68 (88)
-.+|.-++++|.+|..... ++++.+.. +.....+|+|+
T Consensus 212 lwva~~~~~~v~~~d~~tG---~~~~~i~~--p~~~~t~~~f~ 249 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTG---KRLQTVKL--PVDKTTSCCFG 249 (297)
T ss_dssp EEEEEETTTEEEEECTTTC---CEEEEEEC--SSSBEEEEEEE
T ss_pred EEEEEcCCCEEEEEcCCCc---eEEEEEEC--CCCCceEEEEe
Confidence 3455556777777765443 56666654 34678889998
No 181
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=35.22 E-value=63 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.7
Q ss_pred eCCCeEEEEEcCCCCCeeEEEEEEcC
Q psy8253 31 VGSNRVSIYECPDGGSIKLLQCYADP 56 (88)
Q Consensus 31 vG~~~v~Vy~~~~~~~~~~l~~~~d~ 56 (88)
.|-+|+.||++.+++.-+++.....+
T Consensus 27 l~~DRv~Iy~f~~d~~g~vvaE~~~~ 52 (171)
T 4glq_A 27 LACDRVIVYAFDDNYVGTVVAESVAE 52 (171)
T ss_dssp HTCSEEEEEEECTTCCEEEEEEEECT
T ss_pred HCCCeEEEEEEeCCCCeEEEEEEcCC
Confidence 46789999999998766777655543
No 182
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=34.85 E-value=53 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=21.7
Q ss_pred EeCCCeEEEEEcCCCCCeeEEEEEEcC
Q psy8253 30 TVGSNRVSIYECPDGGSIKLLQCYADP 56 (88)
Q Consensus 30 tvG~~~v~Vy~~~~~~~~~~l~~~~d~ 56 (88)
..|-+||-||++.+++.=+++...+.+
T Consensus 163 llg~DRVmIYrF~~d~~G~VvAEs~~~ 189 (327)
T 4e04_A 163 ITGFDRVMIYRFASDFSGEVIAEDRCA 189 (327)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEEECT
T ss_pred HHCCCeEEEEEEcCCCCEEEEEEEecC
Confidence 357899999999999877888766554
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=34.80 E-value=1e+02 Score=20.68 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=35.4
Q ss_pred eEEEEEecCCCCCCCCEEEE-eCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee
Q psy8253 11 LFGAQFNHLLKDDQPRIFAT-VGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM 69 (88)
Q Consensus 11 ~y~v~Fnp~~~~~~~~~fAt-vG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~ 69 (88)
..+++|.|-. ..++++ -++++|.+|+.... ++++.+..+......+.++++.
T Consensus 198 p~gia~d~~~----g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHL----DQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTT----TEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET
T ss_pred CcEEEEECCC----CEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC
Confidence 5778887632 344444 46668999998744 5677776555667788888876
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=33.80 E-value=86 Score=23.00 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCCCEEEEeC----------CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 23 DQPRIFATVG----------SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 23 ~~~~~fAtvG----------~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
+...+|.+-+ +++|.|++..+. ++++.+.- ....+.++-+.|
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v---g~~~~~lavs~D 341 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM---GHEIDSINVSQD 341 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE---EEEECEEEECSS
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC---CCCcceEEECCC
Confidence 3466676653 467888888876 66666632 234556666655
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.98 E-value=38 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=10.6
Q ss_pred eeEEEEeecCCCCceEEEEecCCc
Q psy8253 62 FYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 62 ~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
....+|+.| ++- |+.++.++
T Consensus 83 ~~~~~~spd---g~~-l~~~~~~~ 102 (396)
T 3c5m_A 83 TFGGFISTD---ERA-FFYVKNEL 102 (396)
T ss_dssp TTTCEECTT---SSE-EEEEETTT
T ss_pred cccceECCC---CCE-EEEEEcCC
Confidence 334788876 333 54444443
No 186
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=31.98 E-value=63 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.2
Q ss_pred eCCCeEEEEEcCCCCCeeEEEEEEcC
Q psy8253 31 VGSNRVSIYECPDGGSIKLLQCYADP 56 (88)
Q Consensus 31 vG~~~v~Vy~~~~~~~~~~l~~~~d~ 56 (88)
.|-+||-||++.+++.=+++...+++
T Consensus 182 lg~DRVmIYrF~~d~~GeVvAEs~~~ 207 (343)
T 3s7o_A 182 TGFDRVMLYKFAPDATGEVIAEARRE 207 (343)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEEECT
T ss_pred hCCCeEEEEEEcCCCCEEEEEEEecC
Confidence 57899999999999877888766654
No 187
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=31.56 E-value=1.1e+02 Score=19.93 Aligned_cols=45 Identities=16% Similarity=0.368 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCeeEEEEEEcCCCCCceeE--EEEeecCCCCceEEEEecC--CcEe
Q psy8253 35 RVSIYECPDGGSIKLLQCYADPDIEENFYT--CAWSMDLESGRPLLAVAGS--RAVI 87 (88)
Q Consensus 35 ~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~--~aWs~d~~~~~plLa~aG~--~G~I 87 (88)
+|.||+-.++.-+.++..=. -.|+ .+|+.. +|..+|-.||. +|.+
T Consensus 6 ~vri~~~~~~~~f~iVEkt~------W~yanggtWs~~--~g~~~LtmggSGTSG~L 54 (142)
T 2ofc_A 6 TVRVYQTNPNAFFHPVEKTV------WKYANGGTWTIT--DDQHVLTMGGSGTSGTL 54 (142)
T ss_dssp EEEEEECCTTCCEEEEEEEE------CSSTTCEEEEEE--TTEEEEEESSSSCEEEE
T ss_pred EEEEEeCCCCceEEEEEeee------EEecCCceeeee--CCeEEEEecCCCcceeE
Confidence 46677777654455543211 1232 788887 57776666543 4444
No 188
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=31.40 E-value=65 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.8
Q ss_pred EeCCCeEEEEEcCCCCCeeEEEEEEcC
Q psy8253 30 TVGSNRVSIYECPDGGSIKLLQCYADP 56 (88)
Q Consensus 30 tvG~~~v~Vy~~~~~~~~~~l~~~~d~ 56 (88)
..|-+||.||++.+++.-+++...+.+
T Consensus 176 ll~~DRV~IYrF~~d~~G~VvaEs~~~ 202 (337)
T 2ool_A 176 ITGFDRIKVYQFAADWSGQVIAEDRDS 202 (337)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEEECT
T ss_pred HhCCCeeEEEEEcCCCCEEEEEEEccC
Confidence 458899999999999877888766654
No 189
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=30.58 E-value=64 Score=21.65 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=24.4
Q ss_pred CCEEEEeCC--C--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253 25 PRIFATVGS--N--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA 85 (88)
Q Consensus 25 ~~~fAtvG~--~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G 85 (88)
.+.+|.++. + ++.++++... +..+... .+....+..+|+.| ++. |+.++.++
T Consensus 47 g~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~--~~~~~~~~~~~spd---g~~-l~~~~~~~ 102 (388)
T 3pe7_A 47 GSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTE--GRGDNTFGGFLSPD---DDA-LFYVKDGR 102 (388)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTC---EEEECCC--SSCBCSSSCEECTT---SSE-EEEEETTT
T ss_pred CCEEEEEEcCCCCceEEEEeCCCC---ceEEeee--CCCCCccceEEcCC---CCE-EEEEeCCC
Confidence 444555543 3 3555555443 3333221 23444556778877 233 45444433
No 190
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=28.92 E-value=62 Score=19.79 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC
Q psy8253 7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD 43 (88)
Q Consensus 7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~ 43 (88)
++.++ ++.|.|+.+-.+.+-|..=-.+=++++++.+
T Consensus 42 ~gk~~-gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 42 PGKPV-QLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp ---CC-EEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred CCcce-eEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 55566 9999999987678888888888899998876
No 191
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=28.63 E-value=88 Score=21.89 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCCeEEEEEecCCC---C-----CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEE
Q psy8253 8 GQPLFGAQFNHLLK---D-----DQPRIFATVGSNRVSIYECPDGGSIKLLQCYA 54 (88)
Q Consensus 8 ~~~~y~v~Fnp~~~---~-----~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~ 54 (88)
.-|.||+.|.+-.. . ...++.-.|....|+||+..+. ++|..+.
T Consensus 217 ~lp~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~~~tk---~~l~~~~ 268 (322)
T 4dxa_B 217 EIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETK---ALLISLK 268 (322)
T ss_dssp TSTTTTCEEEEEEEECC-------EEEEEEEECSSEEEEEETTTC---CEEEEEE
T ss_pred cCCCcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEEcCCCc---eeeeccc
Confidence 45777777776431 1 1247888899999999998765 6666663
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=27.37 E-value=2e+02 Score=21.77 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=30.8
Q ss_pred EEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 27 IFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 27 ~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
++.+.. .++|.|++.... +++..+. .......++.|.| ++- |.+++.+|.|
T Consensus 169 ~~V~~~~~~~V~viD~~t~---~v~~~i~---~g~~p~~v~~SpD---Gr~-lyv~~~dg~V 220 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTY---EIKTVLD---TGYAVHISRLSAS---GRY-LFVIGRDGKV 220 (567)
T ss_dssp EEEEETTTTEEEEEETTTC---CEEEEEE---CSSCEEEEEECTT---SCE-EEEEETTSEE
T ss_pred EEEEeCCCCeEEEEECCCC---eEEEEEe---CCCCccceEECCC---CCE-EEEEcCCCeE
Confidence 333333 457999998776 6666663 3445567777766 344 4455666655
No 193
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=25.22 E-value=1e+02 Score=22.12 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=31.5
Q ss_pred CCEEEEe----C-----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec-CCcEe
Q psy8253 25 PRIFATV----G-----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG-SRAVI 87 (88)
Q Consensus 25 ~~~fAtv----G-----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG-~~G~I 87 (88)
..+|.+. | ++.+.|++.... ++++.+.- ...-..++|+.| +++++++.+ .++.|
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~v---g~~p~gi~~s~D---g~~l~va~~~~~~~V 339 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISN---GHDSDAIIAAQD---GASDNYANSAGTEVL 339 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEE---EEEECEEEECCS---SSCEEEEEETTTTEE
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEEC---CCCcceEEECCC---CCEEEEEccCCCCeE
Confidence 5567654 3 357889998876 45554421 223555666665 566666665 45554
No 194
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=25.22 E-value=1.7e+02 Score=20.16 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=40.0
Q ss_pred CCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcC-----------CCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253 25 PRIFATVG-SNRVSIYECPDGGSIKLLQCYADP-----------DIEENFYTCAWSMDLESGRPLLAVAGSRAVI 87 (88)
Q Consensus 25 ~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~-----------d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I 87 (88)
..+||.+. ++.|.+.+.... ++++.+.-+ ......+-+||+.+ ++-++++++..+.|
T Consensus 162 g~lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~---~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE---NKRIFVTGKLWPKL 230 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT---TTEEEEEETTCSEE
T ss_pred CEEEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCC---CCEEEEECCCCCeE
Confidence 36888884 678888888776 666666421 12357899999988 45678888776665
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=24.62 E-value=1.6e+02 Score=19.60 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=34.6
Q ss_pred CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253 10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV 86 (88)
Q Consensus 10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~ 86 (88)
...++++.| ..++++ .+.++|..+.. ++ +++..|..+ .....++++...+ |+-+++..+.++.
T Consensus 38 ~~~~~~~~p-----dG~ilv-s~~~~V~~~d~--~G--~~~W~~~~~-~~~~~~~~~~~~d---G~~lv~~~~~~~~ 100 (276)
T 3no2_A 38 ECNSVAATK-----AGEILF-SYSKGAKMITR--DG--RELWNIAAP-AGCEMQTARILPD---GNALVAWCGHPST 100 (276)
T ss_dssp CCCEEEECT-----TSCEEE-ECBSEEEEECT--TS--CEEEEEECC-TTCEEEEEEECTT---SCEEEEEESTTEE
T ss_pred CCcCeEECC-----CCCEEE-eCCCCEEEECC--CC--CEEEEEcCC-CCccccccEECCC---CCEEEEecCCCCE
Confidence 344555544 345777 56677666655 33 688888653 2345677776644 4443433332443
No 196
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=23.35 E-value=1.8e+02 Score=19.89 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=34.3
Q ss_pred CCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEc-----------CCCCCceeEEEEeecCCCCceEEEEe
Q psy8253 24 QPRIFATV-GSNRVSIYECPDGGSIKLLQCYAD-----------PDIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 24 ~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d-----------~d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
...+||.+ ..+.|.+.+.... +++..+.- .+..+-++-+||..+ ++.|+++|
T Consensus 159 ~G~lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~---~~~lfVTG 222 (243)
T 3mbr_X 159 NGELLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE---HDRLFVTG 222 (243)
T ss_dssp TTEEEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT---TTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCC---CCEEEEEC
Confidence 45689988 5777777776665 66666541 134568899999976 24545544
No 197
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 PDB: 3pcq_D*
Probab=21.95 E-value=43 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.9
Q ss_pred CCCceeEEEEeec
Q psy8253 58 IEENFYTCAWSMD 70 (88)
Q Consensus 58 ~~e~~y~~aWs~d 70 (88)
.-|+.|.++|+-.
T Consensus 22 ~~EEkYaITWtS~ 34 (138)
T 1jb0_D 22 DTEEKYAITWTSP 34 (138)
T ss_dssp HHTCEEEEEEEES
T ss_pred cceeeEEEEecCC
Confidence 4688999999975
No 198
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=21.65 E-value=2.1e+02 Score=19.91 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcC----------CCCCceeEEEEeecCCCCceEEEEe
Q psy8253 25 PRIFATV-GSNRVSIYECPDGGSIKLLQCYADP----------DIEENFYTCAWSMDLESGRPLLAVA 81 (88)
Q Consensus 25 ~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~----------d~~e~~y~~aWs~d~~~~~plLa~a 81 (88)
..+||.+ .++.|.+.+.... +++..+... +..+..+-+||..+ ++-|+++|
T Consensus 182 G~lyan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~---~~~lfVTG 243 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE---HHRLFVTG 243 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT---TTEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCC---CCEEEEEC
Confidence 4678777 4666666665444 677766542 23567899999987 24444444
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=21.34 E-value=2.7e+02 Score=20.97 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253 36 VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD 70 (88)
Q Consensus 36 v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d 70 (88)
|.++++..+.. +-...+..++....+..++||.|
T Consensus 204 v~~~~l~t~~~-~~~lv~~~~~~~~~~~~~~~SpD 237 (695)
T 2bkl_A 204 IRYHTLGTEPS-KDTVVHERTGDPTTFLQSDLSRD 237 (695)
T ss_dssp EEEEETTSCGG-GCEEEECCCCCTTCEEEEEECTT
T ss_pred EEEEECCCCch-hceEEEecCCCCEEEEEEEECCC
Confidence 77777665421 11233444455567889999987
No 200
>2dsr_G Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.10A {Homo sapiens} SCOP: g.28.1.1
Probab=20.82 E-value=58 Score=19.00 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=25.0
Q ss_pred EEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce
Q psy8253 37 SIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP 76 (88)
Q Consensus 37 ~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p 76 (88)
.|=+|..+|..+.+|.....+.... .+|+.|+.+|.+
T Consensus 29 ~vP~Cd~~G~y~~~QC~~s~~g~~g---~CWCVd~~~G~~ 65 (82)
T 2dsr_G 29 PIPNCDRNGNFHPKQCHPALDGQRG---KCWCVDRKTGVK 65 (82)
T ss_dssp CCCCBCTTSSBCSEEECCCBTTBCC---CEEEBCTTTCCB
T ss_pred cCCcCCCCCCCcceeecccCCCCCc---eEEEecCCCCEE
Confidence 4667888888888888743221122 489999766766
No 201
>1y2t_A Lectin; ABL, mushroom, sugar binding PROT; 1.50A {Agaricus bisporus} SCOP: b.97.1.2 PDB: 1y2u_A* 1y2v_A* 1y2w_A* 1y2x_A*
Probab=20.51 E-value=1.6e+02 Score=19.05 Aligned_cols=45 Identities=18% Similarity=0.362 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCeeEEEEEEcCCCCCcee--EEEEeecCCCCceEEEEecC--CcEe
Q psy8253 35 RVSIYECPDGGSIKLLQCYADPDIEENFY--TCAWSMDLESGRPLLAVAGS--RAVI 87 (88)
Q Consensus 35 ~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y--~~aWs~d~~~~~plLa~aG~--~G~I 87 (88)
+|+||+-.++.-+.++..=. -.| -.+|+.. +|..+|-.||. +|.+
T Consensus 5 ~vri~q~~~~~~f~iVEkt~------W~yanggtWs~~--~g~~~LtmggSGTSG~L 53 (142)
T 1y2t_A 5 SIRVYQTTPKGFFRPVERTN------WKYANGGTWDEV--RGEYVLTMGGSGTSGSL 53 (142)
T ss_dssp EEEEEECCSSSCCEEEEEEE------CSGGGCCEEEEE--TTEEEEEESSSSCEEEE
T ss_pred EEEEEeCCCCceEEEEEeee------EEecCCceeeee--CCeEEEEecCCCcceeE
Confidence 35666666544444443211 012 2678877 57776666543 4444
Done!