RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8253
         (88 letters)



>gnl|CDD|192081 pfam08588, DUF1769, Protein of unknown function (DUF1769).
          Family of fungal protein with unknown function.
          Length = 56

 Score = 25.7 bits (57), Expect = 1.1
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 15/53 (28%)

Query: 11 LFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
          LFG  F+H ++D  P  F T               ++K+ + + DP +E + Y
Sbjct: 5  LFGNDFDHPIRDYLPPGFNT---------------AMKIAKWFIDPTLEGDLY 42


>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
           dehydrogenase, ALDH family 12.
           Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
           EC=1.5.1.12), family 12: a proline catabolic enzyme of
           the aldehyde dehydrogenase (ALDH) protein superfamily.
           P5CDH is a mitochondrial enzyme involved in proline
           degradation and catalyzes the NAD + -dependent
           conversion of P5C to glutamate.  The P5CDH, ALDH12A1
           gene, in Arabidopsis, has been identified as an
           osmotic-stress-inducible ALDH gene. This CD contains
           both Viridiplantae and Alveolata P5CDH sequences.
          Length = 489

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 13  GAQFNHLLKDDQPRIFATVGSNRVSIYECPD-GGSIKLLQCYAD-----PDIEENFYTCA 66
           G   N +L +  PR+    GS++V+     +  G +KL     D     PD+ +  Y  A
Sbjct: 209 GPTMNKILLEANPRMTLFTGSSKVAERLALELHGKVKLEDAGFDWKILGPDVSDVDYV-A 267

Query: 67  WSMD 70
           W  D
Sbjct: 268 WQCD 271


>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing.  This is a family of
           proteins that are involved in rRNA processing. In a
           localisation study they were found to localise to the
           nucleus and nucleolus. The family also includes other
           metazoa members from plants to mammals where the protein
           has been named BR22 and is associated with TTF-1,
           thyroid transcription factor 1. In the lungs, the family
           binds TTF-1 to form a complex which influences the
           expression of the key lung surfactant protein-B (SP-B)
           and -C (SP-C), the small hydrophobic surfactant proteins
           that maintain surface tension in alveoli.
          Length = 150

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)

Query: 2   SHKEDHGQPLFGAQFNHLL----KDD 23
           + K   GQPL G + N LL    KD+
Sbjct: 121 TKKTKSGQPLMGPRINDLLDKIKKDE 146


>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and
          related proteins.  Actin depolymerization
          factor/cofilin-like domains (ADF domains) are present
          in a family of essential eukaryotic actin regulatory
          proteins. Twinfilin contains two ADF domains, and
          inhibits the assembly of actin filaments by strongly
          interacting with monomeric ADP-actin (ADP-G-actin) in a
          1:1 stochiometry (with it's C-terminal ADF domain,
          Twf-C) and inhibiting the actin monomer's nucleotide
          exchange. Mammalian twinfilin may also cap the barbed
          ends of F-actin filaments and prevent further assembly
          (or disassembly), in a process which requires both ADF
          domains. The N-terminal ADF domain (Twf-N) binds
          G-actin with a lower affinity than Twf-C; Twf-C can
          also bind F-actin. During capping, Twf-N may interact
          with the terminal actin subunit, and Twf-C may bind
          between two adjacent subunits at the side of the
          filament.
          Length = 132

 Score = 25.7 bits (57), Expect = 2.5
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)

Query: 19 LLKDDQPRI----FATVGSNRVS-IYECPDGGSIK 48
          L+  D PR     +     + V  IY CP G  +K
Sbjct: 54 LIPSDHPRYHFYRYPHTYLSSVVFIYSCPSGSKVK 88


>gnl|CDD|183482 PRK12377, PRK12377, putative replication protein; Provisional.
          Length = 248

 Score = 25.2 bits (55), Expect = 5.8
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 17  NHLLKDDQPRIFATVGSNRVSIYECPDGGSI--KLLQ--CYAD 55
           N LL   +  I  TV      ++E  D G    K LQ  C  D
Sbjct: 123 NRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVD 165


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,515,672
Number of extensions: 354663
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)